The IKKβ and NEMO/IKKγ subunits of the NF-κB-activating signalsome complex are known to be essential for activating NF-κB
by inflammatory and other stress-like stimuli. However, the IKKα subunit is believed to be dispensable for the latter responses
and instead functions as an in vivomediator of other novel NF-κB-dependent and -independent functions. In contrast to this generally accepted view of IKKα's
physiological functions, we demonstrate in mouse embryonic fibroblasts (MEFs) that, akin to IKKβ and NEMO/IKKγ, IKKα is also
a global regulator of tumor necrosis factor α- and IL-1-responsive IKK signalsome-dependent target genes including many known
NF-κB targets such as serum amyloid A3, C3, interleukin (IL)-6, IL-11, IL-1 receptor antagonist, vascular endothelial growth
factor, Ptx3, β2-microglobulin, IL-1α, Mcp-1 and -3, RANTES (regulated on activation normal T cell expressed and secreted), Fas antigen, Jun-B,
c-Fos, macrophage colony-stimulating factor, and granulocyte-macrophage colony-stimulating factor. Only a small number of
NF-κB-dependent target genes were preferentially dependent on IKKα or IKKβ. Constitutive expression of a trans-dominant IκBα
superrepressor (IκBαSR) in wild type MEFs confirmed that these signalsome-dependent target genes were also dependent on NF-κB.
A subset of NF-κB target genes were IKK-dependent in the absence of exogenous stimuli, suggesting that the signalsome was
also required to regulate basal levels of activated NF-κB in established MEFs. Overall, a sizable number of novel NF-κB/IKK-dependent
genes were identified including Secreted Frizzled, cadherin 13, protocadherin 7, CCAAT/enhancer-binding protein-β and -δ,
osteoprotegerin, FOXC2 and FOXF2, BMP-2, p75 neurotrophin receptor, caspase-11, guanylate-binding proteins 1 and 2, ApoJ/clusterin,
interferon (α and β) receptor 2, decorin, osteoglycin, epiregulin, proliferins 2 and 3, stromal cell-derived factor, and cathepsins
B, F, and Z. SOCS-3, a negative effector of STAT3 signaling, was found to be an NF-κB/IKK-induced gene, suggesting that IKK-mediated
NF-κB activation can coordinately illicit negative effects on STAT signaling.