Science method

Cell Culture Techniques - Science method

Cells in culture or in vitro are a useful model for studying the activity of cells in the whole organism or in vivo. Ten years ago or so cell culture techniques were considered somewhat esoteric. Today because of our better understanding of cell nutrition, metabolism and general growth environment it has become a fairly routine procedure.
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I am working with osteoblasts (hFOB cells from ATCC). After 5-6 subculturing their growth became so slow. It is about one week after the last passage and they are still not confluent. I have changed medium every 2 days. But, recently I realized that 2 days after changing medium, the medium become a little bit cloudy that makes it hard to see the cells. when I change the medium, it become more clear and I can observe the cells easily under the microscope. Do you think that my cells are contaminated? What can I do about this problem?
Thanks.
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there is a protocol cryopreservation of BHK cells in 10% DMSO, and let incubating for 2 hours at 4 °C and then at -80?
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I am freezing my cells as follows: 10% DMSO + 90% fetal calf serum then add ampoules at -20 C untill complete freezing then add ampoules at - 70 C overnight then add in liquid nitrogen
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I would like to label Human Serum Albumin for my experiments.
My supervisor suggested NHS and 6-Aminofluorescein as working agents.
Can anybody please suggest a working protocol?
Any suggestions on storing? Can I freeze the labelled protein in a solution?
If you have any other suggestions I would be very grateful!
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Obviously numerous examples of how you can perform the labelling can be found. It depends on whether you use the label(s) separately or as an already prepared ready-to-use sample like in:
In essence it comes down to the use of NHS in order to enable the fluorescein to get attached to your protein. Once the labelling is finished you need to rid of the excess of NHS and 6-aminofluorescein. In:
you see that they use dialysis to remove the excess of NHS and 6-aminofluorescein. In:
Bidmanova, S., Chaloupkova, R., Damborsky, J., & Prokop, Z. (2010). Development of an enzymatic fiber-optic biosensor for detection of halogenated hydrocarbons. Analytical and bioanalytical chemistry, 398(5), 1891-1898.
the conjugates (CF–BSA) were separated from unreacted dye by size-exclusion chromatography.
Your question about storage. Indeed you can make one stock solution (let say 20 mL) and make smaller portions (let say 0.5 mL) and freeze them. Once you take a portion out of the freezer you better use it one time and better not freeze it back again (to be one safe side).
Best regards.
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I am having difficulties in reviving the chicken embryonic fibroblast cell line DF-1. I froze down the cells in complete DMEM medium plus 5% DMSO (half of a entire T75 flask) and thawed following the same procedures as other cell lines. However, even though the cells would attach on the next day, they started to die and float on day 2. I am thinking that the antibiotics (pen-strep) in the culture medium may affect DF-1 growth but shouldn't they only inhibit prokaryotic cell's protein synthesis (as for streptomycin)?? Has anyone come across the same problem?
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Thanks, Guanqun Liu for your reply, I will take it in consideration. my regards.
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I grown LNCaP cells in an RPMI media with 20% FBS. They are all tested and negative for any mycoplasma. They are being grown in a new incubator. It has been fully filled with water, 11 gallons on Thurs. Feb 20. The level of CO2 is 5% and was calibrated with a Fyrite calibrator on Wed. Mar 4. The temperature is set to 38C under ATCC recommendations and is calibrated with a thermometer that reads the same value. there is a medium sized water basin that is maintained at about half full and check every Friday. The cells present no signs of contamination, with the hood being in its own isolated room, opposite of the entrance into the lab, and is only ever accessed by myself, since I am in a two person lab. I sterilize all materials that enter the hood with 70% EtOH, wear a lab coat and gloves when in the hood room. I am not sure why the cells will not stretch and grow, but instead have decided to have a drop in the population.
Please let me know what I am doing wrong and what I could do to get these cells to grow. They were all growing great and working fine in the old incubator, but due to moving from one lab room to another, the new incubator has just been unable to reproduce the same conditions and are not allowing these cells to grow.
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It might be plastic. In my experience efficiency of attachment significantly varies between different plastic providers.
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I have stored my LC540 cells in liquid nitrogen 3 months back and wen I try to retreive cells die. Can anyone help me out. S soon as I take vial out from LN2 I place them in 37 deg C waterbath and add complete medium to it and seed them. After 4 hrs I see cells attached from the next day my cells start dying.
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Hi Arun,
Personally, I don't have experience working with lc540 cells but our team has developed a innovative solution for room temperature storage of different cell types, i.e. MSCs, PBMCs, hepatocytes. Do you cryopreserve your cells for short-term storage?
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Hi I've been trying to find a way to recover cells from matrigel for further culturing. So far the protocols I found are mainly for qPCR and use the cell recovery solution which needs to be kept at 4C for 1 hr to resolve the matrigel. However, I am trying to recover the cells and keep culturing them, so putting them at 4C for 1 hr would damage the cells. Is there a better way to do this? Can I just mix the matrigel with culture medium and pipet up and down to "dissolve" the matrigel? Should I then centrifuge the mixture and will the cells be at the bottom of the tube? Thanks! 
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A gentle mechanical force should be ok. However I like you see the following link:
The paragraph says:
Corning Dispase or Corning cell recovery solution is recommended for recovering cells cultured on Corning Matrigel matrix. The Dispase enzyme will yield a single cell suspension more gently and effectively than trypsin, collagenase, or other proteolytic enzymes, as it minimizes cell damage and surface protein cleavage.
Corning cell recovery solution is another option for cells/spheroids cultured in Matrigel matrix. This solution will allow non-enzymatic cell retrieval in small clumps and is frequently used in metabolic/RNA recovery experimentations. It can de-polymerize a thick Matrigel matrix layer at 4°C and facilitate cell retrieval. Cell-cell interactions can also be disrupted through the use of chelators and/or proteolytic enzymes such as Trypsin or Dispase. Using the solution at low temperature (on ice) and applying mechanical disruption such as pipetting or the use of an orbital shaker are other alternative methods to de-polymerize the Matrigel matrix.
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Hello everyone,
I am using hanging drop method to make 3D cell culture. But I am struggling with handle the spheres when I exchange the media.
Please help me if you have any experience with this problem. Thank you so much!!!
Best,
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Do the aggregated cells stay in the floating culture afterwards? or they should be separated to prevent growing altogether? Thanks!
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Usually people add M-CSF or L929 conditioned medium to regular medium (e.g. DMEM + 10% FBS) to differentiate bone marrow into BMDM (bone marrow derived macrophages) for 7 days.
I have an argument with my friends about the use of M-CSF (or L929 medium ) in the following cell treatments.
Do you use regular medium (DMEM or RPMI + 10% FBS) in the following BMDM treatments or regular medium plus M-CSF (or L929 conditioned medium)? We found the curves are different with different medium.
Thank you so much for any input.
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If you wanna grow differentiated BMDM for longer period i.e 7 days or more then my be you need to add minimum conc of M-CSF in addition to drug or any other agent.
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I'm trying to grow PDX-derived cells from a SCCOHT model and I need them to survive short-term (7-14days) ex vivo
After tumor digestion I platted 7,000,000 cells in a 10cm ULA dish
In the following day they were forming spheroids but the spheroids were aggregating/clumping (First picture)
I filtered through a 40uM strainer and collect the portion that remained in the filter, washed with PBS, added 0.5mL of trypsin for 40s, neutralized with 1mL of 10% FBS media and them diluted in the serum reduced media (Counted with trypan blue and had >90% viability - Second picture)
I repeated this one more time after 3 days but they keep forming these giant aggregates every 2-3 days
I'm unsure if it is worse to separate them into single cells and lose the cell-cell contact or to let them grow in aggregates of spheroids
Does anyone know how to procced in this situation?
I digested the PDX tissue in Dispase/DNAse for 30min, filtered through a 100uM strainer, lysed the RBCs, minimized the debris with Ficoll and them platted in Advanced DMEM + 5% FBS
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Do you want to generate independent spheroids .
Varying concentration of serum with methyl cellulose
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I've noticed most protocols use B27, only some use B27 minus retinoic acid.
Also, is N2 necessary, since B27 already contains components of N2?
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Dear Jana Jezkova do you have any news about the N2 supplement? Do you think is it necessary?
Then, what about Nicotinamide?
Thank you very much
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Hi!
I want to make conditioned media from BMSCs in order to study their paracrine activity in other type of cells. I made the CM when BMSCs were at 90% confluence. Simply, I aspirated basal media (DMEM 1X, 15% FBS, 1% P/S, 1%NEAA, 1%L-Glu), washed 3 times with PBS and incubated the cells only with DMEM 1X for 24 hours at 37ºC. Next day, I collected supernatant, centrifuged it (to eliminate any cellular debris) and stored at -80ºC.
The question is... the cells which have been conditioned, can be used for do more aliquots of CM? I saw that in 24 hours many of them died, so I subcultured them in a shorter flask (from T75 to T25) and now, most of them look well but there are some that seem "damaged" as they were "stressed out" to make CM.
Looking forward to advices!
Many thanks,
Claudia.
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Hi, Claudia.
In teory, CM produced will differ depending on the state of the cell. So if you want to produce "good" CM, it must be produced from healthy cells, not from stressed cells
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Dear experts,
I would like to work on THP-1 as adherent cells without changing its natural. Is there any method or protocol for develop adherence cell from suspension cell lines?
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Hello Dr.Stalin! In our laboratory we promote their adhesion by addition of phorbol 12-myristate 13-acetate (PMA) at a concentration of 100 ng/ml. This conducts the differentation of THP-1 monocytes into macrophages. However, when you say "without changing its natural I do not know if you mean to preserve their monocyte phenotype". THP-1 cells are non-adherent, so all treatments you perform to promote their attachment are going to have an impact on them. For instance, PMA tends to upregulate the expression of some genes in differentiated macrophages, which could affect the gene expression induced by other stimuli. If I am not wrong and I remember well, the treatment enhances inflammatory genes through NFKB pathway. In our case, as we are studying inflammation, we added a period of arrest, leaving the cells without PMA in order to reduce that possible enhanced expression.
I would recommend you (depending on the experiments you have to perform) to try different concentrations of PMA in order to add the minimum necessary to promote their adhesion without enhancing the gene expression. Firstly, I would check the expression of inflammatory genes after the treatment and after the arrest, to see how the treatment affected your cells and whether the arrest decreased the inflammatory response. Lastly, I would characterize the cells through flow cytometry or gene expression of monocyte/macrophage markers to see the profile of your cells.
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I have an air-jacketed CO2 incubator and I need to calibrate its thermal conductivity CO2 sensor. However, I do not have a CO2 sensor that is independent of the incubator to measure the CO2 levels. Is there a method to calibrate the T/C CO2 sensor without having an independent instrument to verify its calibration?
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Hi Ashlee
place your RPMI which should be 7.2-7.4 at 37 degree C into the incubator in a 24 or 6 well plate.
Take some phenol red containing HBSS, prepare aliquots and adjust pH with pH meter and NaOH, HCL to 6.0 up to 8.0 in the intervals you require for your precision (e.g. in the outer wells of a 24 well plate or in a 6 well plate as above)
Take the equilibrated RPMI out of the incubator and compare the color. It is easier with a white sheet underneath and the same level of liquid above and the same phenol red concentration. This is probably the cheapest way but will take time. It takes ca 15-20min for 0.5cm liquid layer to equilibrate in an incubator when it stands still.
Best
Heiko
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Hi,
I have a simple question: When we freeze cells why we use 90% FBS and 10% DMSO?
I know that DMSO is used for cell cryopreservation but I don't know why we use FBS instead of culture media?
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In many cases, cells freezed in 10% DMSO and 90% FBS have better survival after thawing them when compared to cells cryopreserved in less FBS concentration (10%). However, since FBS is quite expensive, using 10% FBS for cryopreservation (80% media and 10% DMSO) is still a good option. I´ve seen around 90-95% viability using this concentrations when cryopreserving breast cancer cell lines.
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Has anyone performed stimulation of fibroblasts to myofibroblasts in cell lines. I found some articles on primary cultures. does the same work with cell lines?
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Midgley et al., 2013. Just use 10ng/mL TGFB for about 24 hours and it should be fine.
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Is it because we are trying to target these cells before they have a chance to divide??? I guess I don't understand the logic behind this.
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A low seeding density of 30-50 % allows for exponential growth of the cells during the time of treatment and allows you to observe anti-proliferative effects. It avoids reaching 100 % confluency, and thus contact inhibition during the time of treatment. If you start treating your cells at > 90 % confluency, you won't be able to detect a loss of proliferation compared to a control, because your control cells are inhibited by contact inhibition as well. This can lead to wrong conclusions.
However, depending on the assay, it can also be necessary to start with a confluent layer of cancer cells, e.g. in some cytotoxicity assays. Think about what you are going to analyze and design your experiment appropriately.
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Does anyone know that how many cells lines and primary culture can be grown in L-15 medium? I need the complete list of cell lines and tissue types.
Our CO2 incubator in cell culture facility is not working and we need to grow our cells in L-15 medium which does not require CO2 for buffering. Another medium is CO2 independent medium by Thermofisher but the information about this medium is quite scarce.
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You can also just get your usual media (DMEM, F12, MEM, etc) as a powder without bicarbonate, supplement with 25-30 mM HEPES and adjust pH to 7.5-7.6 (will decrease ~0.2 units at 37°C). In principle, most media (esp. F and MCDB series) are more "physiological" than L15 in their overall composition and will work fine or maybe even better than L15 this way.
"Normal" mammalian cells typically need CO2 (HCO3-) as a nutrient and thus need the 2-5% CO2 atmosphere to proliferate. But quite a few transformed/cancer cell lines can also grow at ambient air CO2 (some may have changes in morphology). The ones known or developed to grow in L15 will certainly do, some others will too, many won't.
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So recently I started working with HepG2 cell line and I'm having the hardest time to evaluate their confluency due to their morphology and the formation of aggregates, so I was wondering if anyone can tell me what's the confluency of the hepG2 in the photo and if I should sub-cultivate them in this state.
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I think this looks not like HepG2 cell ,not epithelial in morphology but looks like frbroblast cell
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I have found a few questions here for this issue but I am not sure about the current admitted idea.
I want to make a drug treatment for establishing a resistant line and I will use a nucleoside analog. So, should I make my cell population synchronic before treatment? Of course, I will make cell viability and cytotoxicity tests on them.
Some researchers said the starvation or serum deprivation is not proper for making the cells synchronic, while some assumed this method is working. If I try this manner, how can I sure about its trustworthiness? And if it is working, how much durable is it? E.g; for the next passage after the synchronization, should I do it again and again?
Thank you!
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Hello Gülşah,
To your question:" So, should I make my cell population synchronic before treatment? ", the short answer is: No.
You can do this but I don't think it's necessary, or even very useful. Your cells will not immediately be resistant to the drug and you don't want them to die too much, so you are going to start with low, sub lethal doses. The cells not in S phase will eventually "run" into it and then incorporate your analogue.
Another tip: Work with at least two dishes/flasks at the same time, one with a higher one with a lower concentration of the drug. If you then, in the course of your resistance trial, "loose" the cells with the higher concentration (i.e. to massive cell death or senescence) You will have the backup with the lower conc. to go ahead with.
Hope that helps.
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My colleague and I are working with immortalized mammalian smooth muscle cells. We are re-using a modified 96-well plate. Thus far, this plate has shown no signs of contamination. However, to reuse the plate, we have to remove the cells that are currently growing in the wells. This was accomplished by aspirating out the old media, adding 0.1% (w/v) SDS to each of the wells, incubating the plate at 37 C for a bit, and then rigorously rinsing the wells with sterile water. Unfortunately, we neglected to filter-sterilize the 25% (w/v) SDS stock prior to making up the 0.1% SDS solution.
My question is this: What are the odds (qualitatively speaking) that some microbe--capable of surviving in 25% SDS--is going to destroy our cell culture? 
Intuitively, I think the odds are pretty low, since everything else was filter or autoclave sterilized, since we have not had any contamination up to this point, and since 25% SDS is a pretty inhospitable environment. 
But if I trusted my intuition alone, I would not be asking this question, right? I am new to this field. Have other people ever encountered this situation before? Has it led to problems?
Thank you for any advice you can provide!
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Cornelia Virus
I have done many experiments (at least 8 times) in which I have tested the antimicrobial activity of SDS using the plating method (CFU assay) and in all experiments. I used the same concentration of SDS and Bacteria cell culture ( E.Coli as a GraGram-negative type of bacteria) in all repeated experiments, but surprisingly the percentages of killing or log reductions for SDS have been obtained differently. For example, sometimes I have reached 50% of killing, however, this percentage has changed to 1.5% !?
possibly if we can prove that SDS is bacteriostatic and not bacteriocide, we can say that in each experiment depending of OD of the bacteria they SDS stop growing some of them differently in different experiments, however, I have tried to use the same amount of OD (cell concentration) in all experiment,
all in all, I am not sure why I have obtained different percentages of killing for SDS based on colony formation assays?!!?! The SDS concentration is 10%(v/v) in my assay.
Could you please also send me some link by which we can conclude that the SDS is Bacteriostatic not Bacteriocide?
Any help and response on behalf of you is highly appreciated.
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Hi Guys
For the last couple of months my lab has been riddled with infections. All cell lines. It is odd though in that the infection is only visible the day after transfection with either CaP or Lipofectamine 2000. These are not typical bacteria – they are absolutely tiny and don’t swim, but appear to wriggle. It is not Brownian motion and is definitely infection of some sort as confirmed by my confocal microscopy staining.
My working theory is that the bacteria (I feel it is mycoplasma…) are INSIDE the cells until we “stress” the cells by transfecting them, whereby the cells burst open and release the bacteria into the media. I have not seen this online so I am not sure. Has anyone seen this before?
I am aware you cannot really see mycoplasma under the light microscope but the “wriggling” things could be colonies, and my confocal appears to indicate mycoplasma infection.
We have absolutely no idea what else it could be at this stage as we have cleaned everything four times, filtered all reagents…. Everything!
Does anybody have any suggestions as to how to solve this issue? We are currently treating some cell lines with Plasmocin and any cells we “hope” are not infected are being cultured with a low dose to prevent mycoplasma infection.
It is absolutely insane how this infection won’t pass! I think it must be mycoplasma as I have started using both Gentamycin, Amp B AND Pen/Strep in my media to ensure/kill bacteria. And yet… we are always getting infections BUT only apparent following transfection. It is not the transfection reagent as I have used different brands, batches and even tested all individual reagents on cells (ie. Added a few microliters of DNA, Calcium Chloride, HBS, PBS, FBS etc…) and no infection is seen. It seems stress induces the exit of the bacteria from cells.
Has anyone seen this before?
Please help if you can!
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Bit late, but in case you're still interested: we had a similar problem and just found the answer. Try centrifuging your lipofectamine, or transfection reagent. I discovered that ours was contaminated with bacteria - only detectable after centrifuging and analysing the pellet.
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We work with OKG4 gingival Keratinocytes between Passage 13-18 and cultivating them on Collagen 4 in 75cm Flasks and implement them with 2x10*4 cells on 96 Well with 0,6cm growth area and 5x10*5 cells in the flask again. Both products are from Falcon and coated with same concentration of Collagen 4.
There are immense differences in growth and morphology while both products were treated in the same way. The flask show much better results, while the cells in the wells could only be saved after several washings and medium exchanges.
Our Collegues work with HeLa- cells in the same incubator.
We are open for Helps in each directions!
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Hi :)
Making a control without Collagen in the Wells seems to be a good idea it first.
I coat them by myself with 30µl Collagen 4 (20µg/ml) and vaccum it before implementation.
In The Wells i plate the cells between 1,5-2,5 x10*4 and in microscopic view it seems pretty dense. In the Flask they grow with lower density too.
I will keep you updated :)
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I wonder if anybody used Lipogro or Fetalgro for cell culture? Does either match or outperform FBS for cell lines?
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Vadim a Ivanov our team at Labscoop has tested Fetalgro with a number of our lab partners and have found it to match or outperform FBS in numerous cancer cell lines including U2OS, HEK293, CHO, Vero, NB, HeLa and A549 - https://bit.ly/2qXlzIQ
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Hi - I am going to isolate some exosomes from cell culture media soon (with cells grown in exosomes depleted FBS for 24 hours).
However I would like a positive control on the isolation and was thinking about using non-exosomes depleted FBS.
My question: Does anyone know how many bovine exosomes are present in "normal" FBS per ml?
Thanks in advance,
Gary
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Did anyone try different FBS from different provider?
It looks like with the VWR 97068 you don't need that long centrifugation.
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I am new in cell culture techniques, I am maintaing 231mdamb cell lines right now, cells seems healthy and growing well, but I observe in one flask cells are growing in rows inbetween scatterted cells, I am attaching pic.
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Yes Kavita, I think those are cells that were not tryosinized. I do not think this will affect them, however if you plan any morphology experiments do your observations on new flasks/plates/slides, just to be safe.
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These questions may sound silly, but this is all quite new to me! I have two queries:
1. If I grow my cells in 24/6-well plates, is it safe to trypsinize the cells first then lyse in buffer? Or should I scrape cells directly off the plate, then lyse?
2. Since the kits I purchased didn't come with lysis buffer- can anybody refer me to a formulation of this?
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Which concentration of total protein did you use?
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Hi all,
I am an undergrad in a physiology lab. I am investigated the role of ferulic acid on certain markers. My PI proposed an experiment involving the overnight loading of high ferulic acid esterase producing bacteria onto cell culture. I'm having trouble finding a similar type of protocol in literature. I was thinking of heat-killing the bacteria, since FA is not a protein so potential aggregation would not be a problem. I'm unsure if there is a better technique available and I am simply lacking the term for the technique to looking into. Any help would be greatly appreciated.
Thanks
Romina
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Hi Romina, if that's the case, you can simply centrifuge the bacteria culture and apply the ferulic acid-rich supernatant to your cell culture. I guess you have certain kits to measure the ferulic acid level? As long as your concentration is the same as your commercial preparation, you should be fine. I do not recommend loading bacteria into the culture, alive or dead, because bacteria components may cause the cells to alter expression profile, hence you cannot be sure whether the change you observe is due to bacteria or the ferulic acid.
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I have been doing cell culture with B50 cell lines recently and the cells have not been showing the expected neuronal morphology, even after reducing the serum concentration. I just happened to do a check of the osmolarity of my cell culture solution and turned out to be 407 mOsmol/kg, which seems to be quite high compared to literature values.
My DMEM contains: 2.5%FBS, 2mM Glutamine, 10uPenstrep, Na-bicarbonate (3.7g/L), Sodium Pyruvate and HEPES.
I am adding too many things in the plain DMEM? Does anyone have an idea of what adverse effects this high osmolarity might have on neuronal cells? Could this be the reason for the bad cell morphology?
Will be thankful to any insights on this!!
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About 20 years ago, we found, but not published, that about 10% increase in osmolality leads to activation of "volume-activated chloride channels" in HeLa cells.
Thus, 330 mOsM/kg and higher osmolality will affect ionic homeostasis, various ion (primary Ca2+)-dependent pathways, and cell development.
To reduce your media osmolality by 100 mOsM/kg you can either dilute your media with H2O (by adding about 100/407*100% = 24% of additional volume with water), or to reduce concentrations of your initial components (e.g., by decreasing concentration of Sodium Pyruvate by about 50 mM).
What you choose depends on what component concentrations are more important for you in the media.
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Bacterial pellets seems to dissolve readily when put directly in LB-media is it necessary to put them in phosphate buffer first?
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Hi,
Why would you want to suspend them again in LB when you have centrifuged them from some growth media? If you elaborate the purpose, we may suggest you alternatives.
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I'm preparing a micronucleus slide but I see my slide is very dirty. I'm using normal lymphocyte with carnoy fixative and I'm drying it in slide with air and 10% gimsa stain. How do you prepare good and clear micronucleus slides with high quality?
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Try not to eait for full dtying of fixative, it may leave dirty spots on the slide
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What is the recommended seeding density for H9C2 cells (specifically in a plastic tc t25 flask)? We have been seeding at the recommended 10x10^4/cm^2 (250,000 in t25) and they are reaching ~70% at 48 h instead of 72 h. The majority of our cells seem to be attaching. Can we seed at lower amounts without changing the cells? Additionally, how many cells would be in a confluent t25? We are using the media and trypsin specified by ATCC.  
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I observe ~48hrs doubling time and seed cell @ 10K per cm2 usually need to split every two to three days.
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I have gone through quite a few papers, and protocols. .Majority of the papers mention the addition of IL-2 to maintain Tregs in-vitro, however, some papers use both IL-2 and anti CD3. Which is the preferred methodology and why?
Thanks
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You may find protocols using IL-2 alone, aCD3+IL-2 and aCD3+aCD28+IL-2. The difference would be just maintenance vs. maintenance and expansion. So what to use will depend on what you want to achieve.
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I was wondering if there were any alternatives to using FBS/FCS in the Min6 cell culture media.
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Barath Ramasubramanian , might be worth trying fetalgro bgs as an alternative to FBS ( https://bit.ly/2kik1pS ) to culture Min6 cells.
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I am treating RAW 264.7 macrophages with some plant extracts dissolved in ethanol and measure if they decrease ROS/NO production. I have been having some trouble measuring ROS.
A condensed protocol is as follows;
1) Seed 500K cells, in 500ul volume per well in a 24 well plate 37C and 5% CO2. Let them adhere for 3-4 hours.
2) Add 2.5 ul of H2DCFDA 5mg/mL per well
3) Incubate for 30 minute 37C and 5% CO2.
4) Aspirate media, wash cells twice with warm PBS.
5) Add 500ul DMEM media.
6) Add 1ul of plant extract with [50mg/mL]
7) Incubate for 1 hour at 37C and 5% CO2.
8) Add 10ul of LPS [100ug/mL]
9) Incubate over night (18-20 hours) 37C and 5% CO2.
10) Read fluorescence in that same plate at 485nm excitation and 520nm emission in a plate reader.
Somehow the numbers are all over the place. Can anyone suggest improvements? How do you measure ROS in your lab? Should I change the incubation time?
Any feedback is appreciated and I would be more than happy to clarify/expand on the protocol details,
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Thanks to Rahul Kumar , Dan Bryant and
Pritam Sadhukhan
! I'll use your suggestions!
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Hi everybody. Does somebody know a reliable human osteoclastic cell line? I'm searching a good model, but I find almost only murine cell lines.
Thank you,
Cristina
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For Indian providers, you can have a look at species specific osteoclastic cell lines here:
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I have been conducting an experiment on HeLa cells; I do not need phosphate contamination or at least minimize phosphate interaction with my culture as much as I can. Thanks
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You can use MOPS as a buffering agent. It has an almost ideal pKa at room temperature (7.2 @ 25°C, 7.28 @20°C) which is approximately what cells have in the cytosol (pH~7.2). HEPES seems to be a slightly better choice for 37°C (pKa 7.31 vs 7.02 for MOPS).
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Recently I have been problem with HEK293a expansion problem, after 2 passages in flask, the cells stop growing and detach from flask. I am cultivating using DMEM 10 % FBS (High glucose, 10 mM HEPES, 0,2% sodium bicarbonate, 59 mg/L penicillin and 133 mg/L streptomycin) all from Sigma. I need to expand this cells to 16 flask of T-150 (Corning). I don't know what is wrong. I would love to hear with someone had a similar problem.
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Hey,
Are you using cells with high passage? Do you check for micoplasma regularly?
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I wanna get NK cells from PBMC (CD3+ cells will be depleted by magnetic cell isolation MACS for culture), but most protocol require irradiation once every 2~3 days during PBMC culture(~14d).
but the problem is we don't have irradiator. So I want to find the way I can get NK cells without irradiation step.
How can I get NK cells from PBMC without irradiation?
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Instead of depleting CD3-positive cells, you can immediately use a negative selection kit to isolate NK cells from PBMC. I always used the NK cells isolation kit from Miltenyi, which is working well. If you need the CD3 positive cells as well, you can do the isolations sequentially.
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We are trying to isolate keratinocytes from skin using a house made selective keratinocytes culture medium and fibroblast as feeder cells. We have already seen keratinocyte colonies and we have expanded them using our house made culture medium. 
We are used to work with HaCaT cells and we use low calcium DMEM to maintain them in cell culture. Do we have to culture primary keratinocytes like HaCaT cells, or do we have to maintain them in their selective isolation medium?
Thanks!
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Are these primary cells from skin tissue or which tissue?
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ATCC website says CHO-K1 cells require proline in their growth medium.
We have been culturing CHO-K1 cells in our lab for many years in DMEM+FBS. DMEM does not contain proline. So how are the cells able to grow? Are they getting proline from FBS?
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Hi, I observed the same phenomenon. I would also say it is due to proline in FBS. However, I think the growth rate was dependent on the batch of the FBS. And of course, they grow much faster with proline in medium
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Good afternoon,
I have some question related to the handling method for neuroblastoma cells SH-SY5Y.
First, I grew the cells with EMEM medium (10% FBS and 1% Penicillin/Streptomycin). The cells grew well and started to divide. However, the cells aggregated and formed clumps, and the 48H later most of the cells detached from the bottom of the plate and floated in the medium. Since the cells did not attach to the plate, we found it hard to handle and do experiment with the cells.
Therefore, we tried another medium, which is DMEM( 1,000 mg/L- Glutamine, High glucose 4.5g/L, 110 mg/L sodium pyruvate) + 10% FBS and 1% Penicillin/Streptomycin. The cells also grew well at first, but we faced another new problem. The cells did not form many clumps like the first method, but the shape of the cells were changed and some of them still detached from the plate and floated.
(Note, I am aware that there are 2 forms of this cells- adherent and floating forms. But i was told that the floating one is not good to be used in experiment and also I need the attached cells for my experiments)
Hence, I am looking for your recommendations here. Any opinions from all of you are highly appreciated! Thank you!
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FBS and FCS are the same thing. Fetal Bovine Serum, Fetal Calf Serum.
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I'm using primary cells of keratinocytes, but I have problems in subculturing them. They grow well during passage 0. But after subculturing most of them are gone; in other words they did not attach to flask. Dissociating reagent was TrypLE Express and the culture medium used was CnT 07. Anyone have solution? Thanks in advance.
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Some people suggested to use TSB with blood or bolton broth for reviving and 20% glycerol for storage. As this organism is fastidious, could someone who has the experience of working with Campylobacter  please explain the better procedure. 
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We store washed cells of our ATCC C. jejuni lab strain at -80C in 80% 1 x PBS, 20% glycerol using screw-capped cryo-tubes. These stocks retain their viability for up to a few years to my knowledge.
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I'm curious whether anyone on here has experience with InvivoGen's PlasmoTest to detect Mycoplasma infection of cell culture lines, as well as perhaps how it compares with PCR and Hoechst staining.
I know the gold standard is direct culture, but at best we would just outsource that to a commercial service.
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Thanks for all the tips! This was extremely helpful
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Hello all,
I am performing a kill curve assay for the first time and need some help with these simple dilution calculations.
One for example, I have a stock antibody that is 50mg/mL. I need to make dilutions of 800ug/mL, 600ug/mL, and so on. I am plating the cells in 200ul volume in a 96-well plate.
Can someone walk me through the rationale for the math? How much antibiotic do I use to well with 200ul media/antibiotic?
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I am using NEB PCR cloning Kit. There is pMiniT vector inside kit. I transformed ligation bwt my PCR product and pMiniT vector to NEB 10-beta competent E.coli cells. I used SOC growth medium for transformation to increase efficiency. I got colony on LB-agar plate. I inoculated some of these colonies in LB medium. However, none of my colonies didnt grow. Should I use different growth medium?
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For people searching for this in the future. Look to see if you plated to much of the cells.... I think that may be the issue here.
The NEB PCR cloning kit selection method relies on a toxic mini gene that will be reconstituted if the linear pMiniT2.0 plasmid ligates without an insert. The selection against the toxic mini gene carrying recircularized pMiniT2.0 works best when the number of colonies on the plate is <400. Cells can escape the selection by taking up enzyme from other cells on the plate that died (ie were not transformed). If you plate too much of the transformation, a large number of untransformed cells that are not Amp resistant will die on the plate, releasing enough enzyme to enable other cells to escape selection.
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I need to prepare some M9 minimal media but previously the solution has become cloudy after preparation.
Can anybody suggest what I am doing wrong?
Thank you,
Jack.
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Minimal Medium
M9 minimal salts solution (5X concentrate) :
1. To 800mL of distilled/deionized water add:
· 64g Na2HPO4-7H2O
· 15g KH2PO4
· 2.5g NaCl
· 5.0g NH4Cl
Make to 1 liter with dH20
Sterilize by autoclaving (or filter sterilization if autoclave is not available.)
2. Preparation of (1 M MgSO4):
To 100 mL distilled/deionized water add:
· 24.65 g MgSO4•7H2O
3. Preparation of 40% glucose (w/v):
To 100 mL distilled/deionized water add:
· 40g Glucose
  • Add glucose to stirring water in beaker; Do not attempt to add water to GLUCOSE!
4. Preparation of (1M CaCl2):
To 100 mL distilled/deionized water add:
· 147.014g CaCl2·2dH20
Make to 1 litre with dH20
Method for preparation of (1L of media) minimal medium:
· 200mL 5X M9 salts solution
· 800mL of distilled water
Ø Add 15g of agar media if agar plates are to be poured.
After autoclaving, swirl to mix evenly and "temper" at room temperature (until you can place your hand on the flask for 2 second) then add:
· 2mL of 1M MgSO4 solution
· 0.1mL of 1M CaCl2 solution
· 20mL of 20% glucose
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I am incubating cells in RPMI in a CO2 incubator at 37C and 80% RH. The phenol red started as a pink color and after 24 hours in the incubator it has faded. The color is more or less the same, just less bright. Is that normal?
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It is a normal event that depends largely on temperature and pH.
Cell culture medium with phenol red appears usually in red when the optimum temperature is maintained. When you keep it outside for long time while performing assay, it turns into pink. But after incubated at 37C (5% CO2), the color revert back to red. In following days once cells starts to metabolize the contents, the pH drops and the medium looks yellow.
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Hi,
Our B16F10 cell line from ATCC encountered massive cell death after switching the growth media from RPMI to DMEM.
We were stuck with RPMI( 10% FBS, 5ml P/S) for the first 2 passages with the lab mistakenly ordered DMEM w/o sodium pyruvate & l-glutamine. The B16F10 cells looked healthy as we split them at the subcultivation rate of 1:5 and passaged them every 3-4 days.
Then, the growth media was replaced with DMEM when the glutiMAX arrived. 5mL of glutamax (5mM) + 10% FBS, 5mL p/s was added to prepare the DMEM. The cells were split 4 days ago with the new DMEM and at a much lower ratio of 1:12. We checked the cells today and they were all dead. Shown in the pictures.
Any advice for the troubleshoot would be very much appreciated! Thank you in advice for the help!
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B16 variants require media with specific AAs to form melanin. Thus, in RPMI-1640 they loose the brown color. It is best to culture in the recommended media of MEM with additional NEAA and EAA. This maintains the melanin.
As mentioned B16 variants are adherent cells, but when they become acidic or nutrient deprived they form cell mats and also release cells from the plastic surface. Further, they form exosomes and appear to have a large number of floating cell fragments. Thus, a 2 to 3 time per week split is optimal. Also assure that the split results in about 20% confluence.
Hope this helps.
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I have tried to weigh out lipolyzed collagenase to be used for stem cell culture, but it seems to either fall off- or blow off the sides of the spatula inside the fume hood where we measure out our chemicals. Does anyone have any techniques to reduce losing so much of the samples? I am using a very small and thin spatula, so that I am able to reach down inside the container and place 10 mg of collagenase into a 15 mL tube.
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Hi Eden Klepper . Fluffy protein powder in small quantities can be very difficult to measure accurately. My solution was to make a stock solution, make single-use aliquots and freeze at -80oC. Collagenase is fine at -80oC for a long time.
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Dear all,
Hello! I have had issues with Hek293T cells maintenance for quite awhile whereby my Hek cells die after passages 6 or 7. I've recently started trouble shooting to find out the source of contamination.
I discovered white spots in my co2 incubator as well as white fuzzy substances in the water bath tray of the incubator. Are these signs of possible fungal contamination? I've also inoculated a 12 well plate with DMEM (only), DMEM (only) + FBS, DMEM (used for Hek293T cells maintenance) + FBS and DMEM (used for Hek293T cells maintenance) [ALL WITHOUT ANY HEK293T CELLS!!!] and incubated in the potentially contaminated incubator to determine wether the contamination was due to the incubator or the media/serum we've been using in the lab. Upon looking under the microscope, I saw thread/string like structures. I've checked on it a couple of days later and saw more of these structures under the microscope as well as some other structures that I am not able to recognise. Are those resulting from a potential fungal contamination?
Please help! I've attached some images I've took as well!!
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Hi there,
First of all I would check if this seems to be a general issue or if there is something like a pattern. If everyone working in the cell culture lab has the same problems, this seems to be a major issue. If all contaminated cultures have been fed with the same media, this might be your source.
The most common source of contaminations are, in my experience, if people don't work carefully. Also, the water bath is a common source: Often when we had contamination issues, we checked the water bath and found bacteria growing in it.
Therefore, don't panic, clean out the water bath and the sterile hood, use the decontamination program of your incubator, prepare a new bottle of media (or sterile-filter the old one) and thaw a fresh batch of cells. Usually, this most pragmatic way will help. ;-)
Best,
Sebastian
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Hi everyone,
I'm having cell growth problem in outer wells of 96 well plates for bioactivity assay, recently.
The problem occurs during the incubation in the 37oC CO2 incubator. While 96 well plate is treated with the cells, firstly 200 ul PBS is added into the outer wells of 96-well plate as shown in the attached figure (wells colored in grey). Afterwards, cells is seeded into each well of the 96-well plate so that each sample can be treated in triplicates, as shown in the attached figure (wells colored in white) then plate is treated with the standard/test solution. After the treatment plate is incubated in the 37oC CO2 incubator for 72 hrs. By the way, I have used these seeding protocol other times, so I know they work.
During this incubation, no growth is observed in the outer wells containing cells (e.g. B2, B3,C2, D2, E2, F2, G2.). To overcome this problem, PBS is added to the gap between two wells too. Still, the problem was not completely solved. I think the problem is caused by evaporation in the incubator. If you may have an opinion about the reason of this?
I look forward to hearing from you.
Thanks in advance :)
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Hi Aylin,
The phenomenon is called the "edge effect" in which a certain amount of fluid evaporate from the outer wells. It affect growth of the cells and as a consequence, give absorbance reading that affect your expected results. I overcome this by avoiding the outer wells (I only place PBS in these wells to minimized potential evaporation from the inner wells). However, this may not always seem feasible in high-through put assays.
Theremofisher appears to have a type of plate that may be helpful (if budget allows this):
Check out the link from Thermofisher for more info:
This link takes you to a 96-well plate designed with a moat around the edge, to add water or other liquid to avoid evaporation:
Good luck.
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I am using cell culture supernatants in an ELISA. The cells are incubated at 37C, centrifuged, then the supernatants are used in an ELISA at RT. Why does the supernatant collection need to be at 4C if all other steps are at RT or warmer?
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At 4C to avoid protein degradation.
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My MNFS60 cells are dying suddenly after overnight incubation . I propagate cells in RPMI 1640 + 10% FBS + 1% Penstrep + 0.05 mM 2-Mercaptoethanol + 62 ng/ml MCSF as recommended by the cell line provider. I have tried varying different batch of media, different incubators, vessels, ordered different MNFS60 batch etc. All the chemicals are newly ordered. Mercaptoethanol dilutions are prepared fresh. My incubators were validated and checked for temperature and CO2 just 2 days before the cell death. Materials are stored at recommended temperature. Important point that i noticed was: the alliquote of cells used for cell count was left at room temperature by mistake. The cells in it were viable next day. It did not contain mercaptoethanol and MCSF. Where as the cells that I incubated the same day, died!! My incubators always show a slight colour change in the media (orangish yellow) with and without cells.
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Thank you so much for all the answers. I believe the issue was with my cells. I have received a new vial and the problem has been solved.
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We have some pre-made RPMI from 2014. The manufacturer says it lasts a year in a fridge but I think that is just a ruse to get us to buy more. It was never opened. Could it still be good? Can I just compensate by using more?
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Most likely is L-glutamine degrades. Lonza claim that in complete cell culture medium L-glutamine loses 2-3% of its activity per month, but that basic medium is fine at +4 C for 24 months. I suspect that medium without L-glutamine is just fine at +4 for a number of years, often companies put an expiry date on things as an indication of when they won't guarantee it any more, rather than an indication that it is no good. I've used enzymes that are five years past their use by date.
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- When I performed ICC work for treatment cells in translocation stress experiment in IBIDI 12 well removable chamber I got variant signal intensities ...
What is the reason behind cells stress without any kind of treatment!
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Thanks Udesh for participation
Actually Im using
- a removable 12 well silicone chamber for adherent cell lines and immunofluorescence staining...
  1. - Dimensions of wells (w x l x h) in mm 7.5 x 7.5 x 8
  2. - Volume per well 250 µl
  3. - Growth area per well 0.56 cm²
  4. Primary and secondary antibody diluted with blocking buffer (BSA;TRITON 100X;PBS ) to a final volume of 1.250 L
  5. I used to add 60 ul per well nut now I used 100 ul but with the same results even with high low confluent cultures...
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Hi!
I an interested in culturing cervical kerationocytes and calcium levels in media are know to affect their cell growth. I recently obtained two KSFM for the same (one with Calcium and another without). I havent been able to get the exact calcium concentration for the 1x ksfm cat number-17005042 and would be happy if someone can help me with that. Also, what would be the ideal calcium concentration be that would suit keratinocyte growth?
Many Thanks.
Swetha
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Suggest to do a test series. This would be the optimal way.
WD
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I have the XTT salt (powder) and I would like to use it for XTT assay.
For that reason, I am going to follow the Roche CellProliferation Kit which constitues of:
- XTT in RPMI 1640 medium,1 mg/ml, filtered through 0.2 μm pore size membrane (I am going to use DMEM instead of RPMI since I don't have RPMI in my lab right now)
- PMS (N-methyl dibenzopyrazine methyl sulfate) 0.383 mg/ml (1.25 mM) in PBS, filtered through 0.2 μm pore size membrane
The kit is meant to be stored at at -15 to - 25°C.
I plan to prepare the XTT and PMS solution as described. Do you think it's ok to prepare more of them than just for a single use and to freeze the solutions? The XTT solution contains cell medium which raises my doubts. Is it possible that the manufacturer of the Roche Proliferation Kit puts something more in the solutions (cryopreservative?) that is not mentioned in the composition?
I attach the Roche Proliferation Kit leaflet file.
I would be grateful for any responses. Thank you.
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Dear Paulina,
in my opinion, you can prepare the XTT and PMS solution as described and it is ok to prepare more of them than just the volume for a single use and to freeze the solutions? Maybe this can help to safe time (even if this is not so much).
However, freezing could potentially reduce efficacy of your solution/measurement due to reduced signal intensity - as described by the purchaser (maybe minimally). If you want to compare results of different measurements, I would suggest to follow the protocol of the kit / manual, which is often designed to get best possible results (it should be optimized in this kit!).
However, it is your choice, both should be possible (preparing fresh solution for each experiment or use a frozen stock.
Bist wishes.
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I grow LC-540 Leydig cells, the problem with me is as shown in the picture a. The ones rounded in yellow circles are black particles attached to the plate loosely it does not show any movement, but once i wash those cells with PBS it gets removed off easily as shown in picture b. After subculture i get back these particles.
But i feel like these are dead cell particles and i am not sure if this is contamination too..
Please help me identify the problem and need suggestion to get rid of these.
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This doesn't look good and might be contamination. I suggest you check the whole incubator and ask if anybody else using this incubator has the same problem with their cells, if not - discard this dish and start new culture.
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Hi All,
I would like to check whether commercially available cryovials with silicone gasket, internal thread are safe enough to store in liquid phase of nitrogen tank or not. I see all labs are practicing their own way. They said no problem and can dip into it. Some said no, the liquid can go into no matter with silicone seal or inner or outer thread and suggested to store in vapour stage instead. (above the liquid). Available cryoflex is not also convenient to use as it may take time to do it and still exist tiny spaces for liquid to come in too. Very confusing. What is the best method to seal the vial before putting into the cryobox of LNT. Are there any special seal? How about wax? Aluminium tape? or Silicone paste to wrap. Paper tape?  
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I disagree with the other answers. If you want to ensure the lowest chance for cross-contamination from one sample into another, you should store the vials in the vapor phase only.
If you must store in liquid phase, which I do not recommend, you can seal the tube using Nunc cryoflex tubing sealed around each cryotube. It adds cost, inconvenience, and the tubing seals with heat which can interfere with optimal cryopreservation.
It has been documented that viruses have transferred between blood samples stored in liquid nitrogen.
And, there is a reason *all* the handbooks, including the handbook from Thermo Fisher who makes the Nunc Cryovials and Nalgene Cryovials, recommend vapor phase storage. Furthermore, the guidelines for human cell therapy applications require vapor phase.
I would argue that one would have no way to know they had a cross-contamination event if they did not test for it. Case-in-point: the extensive contamination of various cell lines with HeLa cells went unrecognized for many years. (Not that it happened via liquid nitrogen. It probably happened in the hoods.) My point is just that low level cross-contamination is probably way more common than scientists want to believe.
BTW, if the tube is not tightened all the way after completely freezing (before putting into liquid nitrogen) the liquid nitrogen can escape upon thawing and the tube may not explode.
I practice other techniques to avoid cross contamination of cell lines with unwanted cell types, bacteria, viruses and mycoplasma such as keeping media bottles specific to each cell line, cleaning the hood and traps completely between cell lines, and only working with one cell line at a time, except for experiments involving multiple cell lines.
Just my input, but I do run a very tight ship.
Good luck!
Jen
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Hi,
I am working with the U937 cell line, which I wish to use for macrophage survival assays. For my protocol I dilute my cells to 0.5x106 cells per ml (or well) and add PMA at a concentration of 100ng/ml for 24 hours. The cells are then washed with PBS and then serum-free media (RPMI with penicillin/streptomycin) is added for 48 hours before bacteria is added at a MOI of 5:1 (bacteria: differentiated U937s) and I carry out the assay procedure.
However, I'm finding that my differentiated U937s are not adhering to the bottom of the wells and do not have characteristic differentiated-macropage-like cells after the PMA and 48 hours in serum-free medium. They are easily washed off with PBS.
I am not sure why this is happening. Another colleague has had no problem with the U937s.
I am wondering if the U937s are too high a passage number (p38)?
Or if I should try carrying the PMA concentration or some other aspect of my protocol? Any advice is appreciated!
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Hi everyone,
Thank you very much for your answers! I have revived a frozen stock of U937s (p26 - hopefully this is a 'young' enough passage). I will definitely check the PMA I'm using - the stocks are over a year old so that could very well be the problem.
Dinesh Kumar Parandhaman I will double check I'm mixing properly also. I am not sure about the function of the serum-free media step... I will look deeper into this.
Thilini Wickramasinghe what passage number are your stocks when you start using them, do you mind me asking?
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I work on evaluate the cytotoxicity of herbal extract on primary human monocyte-derived macrophages (MDMs). When I'm doing MTT assay on 96-well plate, I scrape MDMs from cell culture flask and seed in 96-well plate with density 50,000 cells/well. However, after overnight incubation most of MDMs are not attach to the surface and lost during washing step in MTT protocol. So, I think it might come from the high density of the cells and there is no sufficient surface area for MDMs to attach(?) or the cells just died after cell scraping (?) Could anyone please suggest me on the optimal density of primary MDMs in cell culture plate or other tips for handling with MDMs culture would be greatly appreciated.
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1. do not subculture your cells
2. it is generally considered that there is 9-10% of monocytes are present in healthy volunteer buffy coat.
3. after counting of cells i have followed the below numbers:
in 24 well 3 million PBMC in 2.5mL ( approx 1 million per mL) ( final monocyte count is 0.3 million( you can count a representative well)
in 96 well 1 million PBMC in 250uL ( final count is 0.1 million)
hope this helps you
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The yellowing of the media indicates the cells have an increased metabolic rate. The yellowing only occurs with the DM cocktail; when the DM cocktail is replaced with maintenance media (DMEM + 167nM insulin) on Day 2 the media is still healthy on Day 4,
At the end of the differentiation program (14 days after induction), I only get small patches of differentiated cells; the vast majority of the well contains undifferentiated cells (I run the experiment in a 6-well plate). The cells have been strictly sub-cultured and to my knowledge, are relatively low passage. 
Here is a run down of the protocol I use: preadipocytes are grown to 2 days post-confluence in DMEM supplemented with 10% FBS +1 x P/S (day 0) and the medium changed to DMEM supplemented with 10% FBS, insulin (167 nM), dexamethasone (0.5 μM), isobutylmethylxanthine (IBMX) (0.5 mM) and rosiglitazone (2μM). After 48h, the medium is replaced with medium containing DMEM supplemented with 10% (v/v) FBS and 167 nM insulin. On day 4, after inducing differentiation, and thereafter, the cells are cultured in DMEM with 10% FBS. This maintenance medium is changed every 48 h until the cells are utilized for experimentation.
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Hi James Edward Merrett , I was wondering if you ever found out how to fix your problem with the adipocytes? I am having a similar problem currently. Thanks!
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Thiotone E Peptone (ref 212302) has been discontinued. Could you recommend an alternative product?
Thank you
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you can use peptone AT (peptic digest of animal tissue). It is same as thiotone
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As part of my Bachelor Thesis, I'm working on a protocol for expression of Caspase-3 in E. Coli (and subsequent purification). I heard once that the protein yield can be increased by not only having a preculture but even a preculture of the preculture itself (Hence, pre-preculture). Does someone know more about this topic or recommend literature?
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I am not aware of any reason why that should be true. The more generations, the higher the change that you will select for faster-growing mutants (and those more often than not have freed themselves of the burden of producing a heterologous protein at high levels). The only situation where you need a long seed train is in industrial settings, where the inocculum of, say, a 300 L reactor needs to be itself a rather large culture so you start with a small shake flask culture, from there inoculate a small reactor, and from there go to a large reactor.
Hope it helps!
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Hello everyone!!
I am trying to grow MIN6 cells, but I am unable to. The growth rate is too slow. I can hardly see 5-6 cells in the plate. Also the morphology of the cells is highly irregular. I am using DMEM plus 12 percent FBS with high glucose. Any suggestions are highly welcomed.
TIA
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Hello
You can culture MIN6 cells in DMEM-High Glucose medium, 15% FBS, 1% P/S, 1% Glutamine (2mM), 20 mM HEPES (diluted from 1M HEPES purchased from Sigma) and 50-55 μM beta-mercaptoethanol (1.75-2.0 μl/ 500 ml of medium). Change medium every 2-3 days. Moreover, MIN6 cells are very sensitive to FBS, therefore, it is important to check a few batches of FBS and see whether the cells grow better with a certain batch of FBS.
Good luck
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Dear All,
What is the best way of picking the positive clones while establishing a monoclonal cell line expressing your desired transgene. I am currently doing it with a P-20 pipette under a light microscope. However, it is very hard to tell whether I have specifically picked the single clone or not. Is there a better way.
Thank you
Ikram
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Sindhu Naik - For this type of experiment, you're supposed to start from one single cell (to obtain monoclonal population). Going stepwise from 96-wells plate to T25 (or more) ensure to have the best conditions for your single cell to expand to a monoclonal population (cells always prefer to grow with friends especially if you cultivate your cells under selection pressure!). Going too fast to large scale culture (for example from 96-well plate to T25) will dilute you cell population and results in change of phenotype (that can be observe under microscope with singular shape).
However, several commercially available cancer cell lines grow very fast in any situations. In that case, you can definitely skip few steps and use larger culture volume faster.
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Hi Everybody! I was culturing HL-1 cells in Claycomb medium with all needed supplements and they were growing nicely but I ran out of that medium and tried to culture them in DMEM. The cells were continuing to grow but they were also dying in great numbers. I wanted to ask if anybody figured out what is ''the secret portion'' which I could supplement to DMEM so my cells could live happily ever after ? :)
P.S. Claycomb medium is very expensive but nevertheless I ordered it. And I have to wait at least two months to get it.
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No, Claycomb medium is recommended to culture HL-1. Cells may grow in other medium, too. However, you can non be sure thta this will an impact on the phenotype or character of the treated cells.
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This concerns linear PEI 25kDa. So far I am aware of two methods:
1: stir the PEI in MQ (1mg/ml) and dissolve by dropping and holding the pH at 2. After its transparant  increase pH to 7 --> filter through 0.22um filter --> aliquot --> 4x freeze-thaw.
2: stir PEI in MQ (0.323mg/ml) and dissolve by heating to 55C O/N. Next day, the solution is cloudy --> cool down to RT --> adjust pH to 7 (still cloudy) --> stir again at 55C and repeat this until its not cloudy anymore and pH is stable at 7. Then filter through 0.22um filter --> aliquot --> 4x freeze-thaw
I'm trying both. #1 works is fast and works well. #2 takes a lot of time before the solution is transparant. 
Does PEI dissolve completely? And what is the best method to dissolve PEI to use for in vitro transfections?
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See below
Good luck
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I am trying to improve the survivability of primary neuron cell cultures. Currently, I am getting great survival out to 20-days but would like to push my time point out to 42 days. I currently believe that the neurons are being crowded out by microglia so I am looking for ways to reduce their growth. Additionally I am curious if anyone has had any experience with 3D cell culture techniques and could provide some technical expertise and thoughts on this method compared to standard 2D cell culturing.
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1. The way to prevent overgrowth of glial cells is to remove FBS. You may grow the astrocytes with DMEM + FBS, then you have to use the same volume of Neural Basal A plus B27 for seeding the neuroprogenitors. 2 to 3 days later, you may have to have all the medium without FBS.
2. Someone said 9% of oxygen may help to survival of cultured neurons.
3. Depend on what types of neurons you are growing. If you were starting with cortical or hippocampal progenitors younger then E12.5 of mice, I would suggest you to add certain amount of GABAergic interneuron progenitors from MGE and CGE to make a "natural" population environment.
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Hello everyone,
I am currently trying to set up at a new lab in order to begin experiments on osteoclasts. Before starting anything, I wanted to make sure that BMMs have indeed differentiated into osteoclasts by using TRAP staining and PCR.
In our lab, we harvest bone marrow-derived macrophages (BMM) from the tibia of 5 week-old female ICR mice for osteoclast differentiation. For BMM differentiation, I seeded 2 x 10^5 cells per well with full alpha MEM and M-CSF (30ng/ml). I used 3 6-well plates in order to retrieve cells on Day0, Day2, and Day4 of differentiation. On the next day, I retrieved the Day0 plate using 1ml of Tri-RNA reagent and changed the media (containing M-CSF and RANKLE (1:1000)) for the other two plates. I retrieved the rest of the plates on appropriate days.
After retrieving all cells, I performed RNA isolation followed by RNA quantification (ND-1000), reverse transcription, PCR, and gel electrophoresis. My problem here is that I'm getting nothing on gel for Day0 with actin, GAPDH, and HPRT primers. I triple-checked all my steps for gel, PCR, and reverse transcription using other cells and the technique does not seem to be the problem. I performed RNA and DNA quantification using Nd-1000 (I know they are not super accurate) and I've attached the results as image files.
Please help me figure out what made the Day0 bands disappear! Thank you in advance:)
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How many hours after plated you have harvested your cells for assays on day 0 ?
Whether your cells were healthy on day 0 ? may be the genes were not expressed.
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I am trying to find a media recipe for the MCF10A cells. I have ordered the MEGM kit from lonza that comes with MEBM media + bullet kit of growth factors. The protocol from brugge's lab gives exact quantities of the growth factors to be added which is different than the quantities provided by lonza in the kit. Should I add the same amount mentioned in that protocol or the entire vial content given by lonza?(vial amount of EGF and hydrocortisone is higher that the mentioned amount by Brugge's lab protocol). will it harm the cells if i add less?
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Hi Jinrui.
This is the recipe we used for this cell line:
DMEM 11320-074, Gibco, Ref: 11320-074
F12
EGF [100 ug/ml] = 20 ng/ml
Hydrocortisone [1mg/ml] = 0.5 ug/ml
Cholera Toxin [1mg/ml] = 100 ng/ml
Insulin [10 mg/ml] = 10 ug/ml
Pen/strep
Good Luck
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I'm interested in using Sircol Collagen Assay kit to determine if my stimulated renal cells are inducing collagen synthesis, does anyone have experience with this? i'm using adherent cells in culture, thank you!
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Thanks!!!
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Hypothetically, could someone survive by consuming DMEM with L-glutamine? I understand this is not recommended. I just wonder, because DMEM is formulated for human cells.
Thank you.
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Fascinating question indeed.
I doubt if we can survive for long on just DMEM. Even though it is optimal for cells in vitro, it may not suffice for optimal functioning of the organ systems in vivo. So eventually, some form of deficiency will ultimately kick in.
But it's worth experimenting in laboratory mammals of the ethics board approves.
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Hello,
I'm tryting to perform an adhesion assay adding THP-1 labeled with calcein to a monolayer of endothelial cells previously stimulated with LPS or TNF-alpha. However, I realised that THP-1 labeled tend to attach to the bottom of the culture plate (which they don't do normally because they are suspension cells), so I have a problem with unspecifity adhesion and I don't consider my results reliable. Have someone perform this assay and have some solution or "trick"? I do it in 96-well culture cell plates.
Thank you.
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THP1 cells should not adhere to your flask when cultured in complete RPMI medium. I worked with these cells for years and never had this problem.Aside from the usual PMA stimulation, they would also become adherent if cultivated In low serum media. Did you starve your cells (culture in 0,5-1% FCS in your experiments?)
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Hi,
we will be soon working with CHO-S cells for recombinant proteins expression. We are deciding which media is the optimal to work with. Our first choice is FreeStlye (LifeTechnologies) for growth and CDOpti CHO (LifeTechnologies) for maintenance after transfection.
A colleague (that worked with these cells and another protein like 4 years ago) told me that she tested Forti CHO (LifeTechnologies) (with different supplement combinations) and ExCell CHO (Sigma) and she wasn't unable to notice any difference in protein production.
Do any of you have any media recommendations we should take note of for better protein yields?
Thank you very much.
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Hello
CHO cells should be cultured in Ham’s F12K (ATCC suggestion) or DMEM modified with 10% FBS. If cells are not doubling every 14-17 hours, supplement the medium with 1-2% FCS.
Subculture Protocol for CHO:
CHO cells grow quickly and easily and cell count should have a doubled within 14-17 hours.
Rinse cells with 0.25% Trypsin/0.53mM EDTA
Add 3 mL of Trypsin-EDTA to flask and watch for cell layer dispersal under an inverted microscope. this should occur within 5-15 minutes. Do not agitate cells during this type. Agitation encourages clustering. If cells are not detaching, place in incubator for 5 minutes to facilitate dispersal.
Centrifuge cells and remove supernatant to remove Trypsin-EDTA
Add 6-8 mL of growth medium and aspirate cells with pipette, gently.
Add aliquots of cells suspension to culture vessels.
incubate at 37°C in 5% CO2.
Split confluent culture 1:4 to 1:8 every 4-7 days with trypsin/EDTA. Make sure to renew medium 1-2 times between sub culturing.
please , visit links here may help you
Good Luck
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I will be treating heparinized whole blood with a small molecule for various timepoints and then extracting RNA for qPCR.
Do people recommend incubations in tubes or plates/dishes?  5% CO2/37C or only 37C?  I am set on the RNA extraction part, but fairly inexperienced with the prior steps, so any hints or tips would be well appreciated.
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following
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Hi,
I'm having some troubles when seeding cells in m24 plates: after 24-48 hours of seeding, cells don't seem to attach in some areas of the wells or they attach at the beginning but then they die. This leads to irregular replicates and no-reliable results. I've observed this in 2 different cell lines (sw620 and DLD1), I've changed medium bottles, tried with different cell vials, and put plates in 2 different incubators, but I still have this irregular attachment/growing. Could you help me? I've done lots of this experiments before, both in m24 and m96, and everything went OK. I don't know what can be failing now...
Thank you!
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Hi Susana,
I am having similar problem with you. The cells do not die but do not grow in outer wells containing cells of 96-well plate. As you mentioned above I have used this protocol and I know they work and trouble started when we moved to other building.
I think the problem is caused by evaporation in the CO2 incubator. There is no problem in the T-25 and T-75 flasks during cell growth but the issue started in 96-well plate stage. Did you solve the problem? How did you solve it?
Thanks in advance.
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I need to grow BEAS2B cells. Can somebody tell me what are the growth factors that comes with BEBM media from Lonza.
Also, is it the only media we can use or anyone have tried some alternative media from different supplier.
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Beas-2b cells should be cultured in BEGM medium. we have tried to culture them in LHC-9 or DMEM FBS medium or ATCC own medium or others, cells undergoing either differentiation or EMT, loss of its originnal phenotype.. we are prepareing our manuscript refering this.
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I currently have SH SY5Y cells from atcc and no matter how much I try to reduce clumping by pipetting up and down several times on each passage, a significant number of my cells are still clumping. There is a monolayer of cells but it appears to be the nucleus for the clumps/colonies of cells. I do have floating cells as would be expected, but they are the least of my concerns at the moment.
Media (DME/F-12 with 10% FBS and 1X PenStrep) is replaced every 4 days and cells are grown at 37 C with 5% CO2. Upon passaging of cells, a small amount of 0.25% trypsin, 0.53 mM EDTA solution is used to help adherent cells detach.
Any advice or comments on this would be appreciated. Thanks in advance.
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5 min at 37C, then stop the reaction by adding normal medium. You can try to pipet them 1-2 times against the wall of the flask when washing them down after the trypsinization. That should break them apart. You just need to be careful not to do it too harsh as that might break the cells.
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Greetings,
I have fixed MC3T3 cultures and incubated with 40mM alizarin red (pH 4.2) for 12 minutes. When rinsed with water, three times for 5 minutes each, the final wash still remains darkly coloured, indicating that there is more background alizarin to be removed. Has anyone encountered this, and do you continue washing or simply assume the background will be equivalent with equivalent washing times for all wells?
Thanks
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Hello
I advice you to filter your prepared solution (pH 4.2) with a filter paper used in labs in general. Also increase your washing time or washing numbers.
Good luck
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Hi,
 whats is the split ratio, when and how frequently we need to split. How much to seed in T25 or T75?
Regards
Gautam
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I started working with the Beta TC6 cell line but I am struggling to culture these cells.
As you were also facing similar problems, could you tell me if you succeded on culturing these cells, your experience and what did you do to improve the cell viability?
I am very frustrated at the moment, your input would really help me.
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I would like to buy an automated cell counter for adipose stem cells. I am thinking of acquire the Countess® II FL Automated Cell Counter. Do you think is the best or somebody could recommend another one?
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Dear Di,
I have used both instruments. I was talking about the Tali based image cytometer there because we bought it and instrument stopped working after few days. It wouldn't start at all. Then they replaced us with a new one and again same thing happened. Finally we got this third replacement which worked fine after that time and works nice till now. Coming to countess II FL. I am using that system in my current postdoc lab. Instrument works fine, but you have to add trypan blue everytime in your cells to count them because the instrument automatically takes trypan blue dilution in count. So, its problematic sometimes when you need a quick cell count from different cell types and don't want to use trypan blue everytime. On the other side, it's helpful if you can do trypan blue because it gives you status of live/dead cells alon with cell number. So, it really depends on your application and what you want. TALI based image cytometer doesn't take into consideration the trypan blue dilution so the cell number you get is actual one. If you are using trypan blue then you have divide your cell number to 2 to get actual cell number. TALI requires 20ul of sample to read and countess II FL requires 10ul.
Hope it helps!
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I'm trying to optimize the NRU assay on 3T3 cells as low OD540 reading (about 0.1-0.2) were obtained from previously done experiments. I prepared 50ug/ml stock and incubated it at 37C for 1.5 hr, added to cells and incubate for 3 hr.
- I took the neutral red solution that's incubated at 37C from waterbath into the hood prior to washing of cells with PBS. Therefore, I'm thinking if the solution might get a little bit cool down (less than 37C) while I was washing the cells with PBS and that caused precipitations.
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Yes, they look like neutral red crystals, try heating stock to 40-42°C for some time instead of 37°C, followed by 0.45uM filtration. It may help.
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I am planning to place a large order and need a good source for T25 and T75 flasks. I am looking for good quality for reasonable price.
Thank you.
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In Europe: Greiner Bio-One‎ is quite popular
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I would like to do dilution cloning in immortalized mouse embryonic fibroblast cell lines obtained by serial passaging (to be sure that I work with a uniform clone). However, I don't know whether this is feasible, as MEFs often require cell-cell interaction to grow. Do you have any experience with that? Do I need a special layer (agar, feeders...), or will they be OK with plastic? Or is it impossible to tell and it depends on the specific cell?
Thank you in advance for your answers.
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Dear all,
I also have similar questions regarding limiting dilution on MEF. However, I have primary MEFs that have passage no. is 5-6. I would like to knockdown genes via lentiviral transduction in primary MEF and do limiting dilution for selection and pick out single colony. Does anyone perform this procedure before?
Thank you in advance!
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We are currently working on a experiment in which we would like to add lactate to our cell cultures in different concentrations. Right now we are wondering whether we should order Sodium L-Lactate ~98%, Sodium L-Lactate >99%, Sodium DL-Lactate or Sodium D-Lactate. We would like to expose our cell cultures to a lactate titration varying between 0 to 6-8 mM or maybe even higher depending on results from different papers (normal concentration of lactate in blood and tissue is 1-5 mM). 
Is there anyone who has experience with adding lactate to cell culture media and who knows which is the best lactate solution to order for our experiments? We are trying to imitate a hypoxic environment for our cultures.
Thank you!
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Hi, seems so late to answer!!!
However,I wonder what Panduranga Rao has said because lactate (L Lactate) is a predominant/ main byproduct in glucose metabolism, which is produced from Pyruvate by the enzyme L-Lactate dehydrogenase however, now it is established that d lactate is also produced and metabolised in cells but in very minute quantities. So it is certainly L-lactate but not D- Lactate if you or any other person intends to study metabolic role of lactate in cell culture.
Hope this helps
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I couldn't find a sufficiently detailed resource. This may be a very simple question for the social environment. These cells when I isolate cells from a particular tissue; Could it be from differentiated cells to not be divided? In primary cell cultures, I think we should do the same as the cell environment (like in the tissue environment's inducer factors). So if we select quiescence cells we can induce them for proliferate even if they are differantiated cells, but this is different environment. How can we sure from results of the experiments as if in vivo.
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Hi Oguzahan,
First of all quiescent state is not same with (terminally) differentiated state. In fact, I think quiescent cells are usually stem/progenitor cells (thus, ready for proliferation, but just cell cycle arrested) that acts as stem cell reserve and are important to maintain cellular homeostasis after injury.
The best example of quiescent cell culture would be satellite cells from skeletal muscle. When isolated during quiescent state it would exhibit phenotype Pax7+ and MyoD-, but when it is activated by bFGF it will become Pax7+ and MyoD+. You can keep it non-proliferating in culture by culturing in low serum condition (2% horse serum) without bFGF; however, due to rare population of these cells I think it will be very difficult to do experiment on them without expansion.
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I need some suggestions about differentiation process of U-937 cell line. It would be about seeding concentration of cell, PMA concentration for treatment or resting step ...
If you have, could you send to me cell image for each step...
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Hi Adem,
You can differentiate U-937 cell line using "a differentiatial mark" that we had utilized in our experiments with PMA-stimulated U937 macrophageal cell line. Namely, as U937 cells respond to the presence of LPS with a marked increase in the rate of cellular AA metabolism and cytokine release into the extracellular space, we measured activity of cyclooxygenase 2 (COX), which catalyze the key step in the conversion of cellular arachidonic acid into prostaglandins. The COX-2 expression is strictly coordinated with up-regulated in PMA-differentiated U937 cells stimulated with lipopolysaccharide (LPS). At the same time, COX-1 is not up-regulated at all. In turn, another "market sign" we'd used from time to time was enzymic activity of the Mg+2-dependent phosphatidic acid phosphohydrolase 1 (PAP-1), because up-regulation of COX-2 strictly depends on the PAP-1.
In regard to your request on seeding concentration of cell, PMA concentration for treatment, and on phenotypic and morphologic changes observed in U937 cells after treatment with PMA (100 nM) in the presence of Haemophilus influenzae, please read this paper of Dr. Jahn and colleagues 
Best wishes,
Ilya
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I am interested in recieving murine ovarian cancer cell lines to test efficacy of our platinum (IV) pro-drugs in animal models.
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Unfortunately, not.
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Two to three months ago, I transfected SHSY-5Y cells with cDNA of  a target enzyme, followed by treatment with section antibiotic (Genaticin). once the cells became confluent, I split them and add the antibiotic. In the last few weeks, I notice a significant changes in the shape or how these cells look. One of my colleague advice me to not allow the cells to become confluent, as this the cause (in his opinion) for such changes. however, I notice this is the case even 1 day after splitting (about 30% confluent). Is this change in cells sounds normal?
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All these answers are valid. Cell culture morphology is dynamic and highly dependent on the status of the cells and its culture conditions - molecular age of primary cells (population doubling), media pH (changes with temperature), content and concentration of growth factors and energy substrates, manipulations and treatments, etc.... which is why it is so important to follow strict and good cell culture practices. But I want to add that intra- and inter-species cell culture contamination is a factor everyone should consider and TEST BEFORE beginning working with a new cell line (even if obtained from a trusted source) and even after treatments or genetic manipulations. Contamination of human cell culture with another species such as mouse, or having multiple cell types from the same species in a single culture may look like a subtle or spontaneous morphological change that you would think is a result of your experiment in your culture if you don't know better. No one wants to be the unfortunate soul to work on a cell model for quite some time to only find out after many experiments and data collection that your model was not 100% what you thought it was.
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If yes at what density were they plated and how long did it take to form colonies? Thank you!
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It is not advisable to perform a clonogenic test with HEK293 cells if you have another option, as these cells loosely attached to the surface tend to leave the surface after 5 to 6 days.
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I grew up multiple prostate cancer cell lines at multiple seeding densities and incubated them for 72 hours. After 72 hours I substituted the normal culture media for Chemically Defined Chinese Hamster Ovary media (CDCHO GIBCO) and incubated them for a further 72 hours. I then collected the CDCHO and tried to run a BCA protein determination. Unfortunately the blank as well as all the standards (using CDCHO as a diluent) gave very high readings, often bigger than my actual secretome samples. This leads me to believe that there is something in the CDCHO that is interfering with the BCA assay.
Does anyone have any experience when using CDCHO or secretomes when calculating the total protein content? If so what method would you advise (such as Bradford or Lowry assays) and can you tell me what might be interfering with the BCA assay?
Kind regards,
Euan 
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Hi Euan,
I have gone through the paper which you linked for the modified Bradford assay. I have a doubt regarding the unknown samples dilution. Can you share with me how much volume (ul) of unknown sample can be used for the dilution?
Thanks!
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Rhodopsin in Drosophila is 35kDa membrane protein. Do you know some good homogenization buffer?
In the literature I see that most of the people use Laemmli sample buffer and just simply smash the heads, boil for 5 min, spin and load on the gel. This is strange to me because the are no protease inhibitors etc. I was trying this procedure with no results on the final blot.
Do you know the reason why people use Laemmli buffer instead of standard RIPA ?
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For 4C5 do not boil samples before loading on gel. Just incubate at 37C, 20 min,
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Sometimes I see these small particles surrounding my cells in cell culture plates. Are these particles microbial contamination?
The first image is a 22RV1 cells used to be clear in the begining but after I split them into two plates I started to see those particles.
The second image is LNCaP treated with siRNA and I started to see those particles the next day after treatment.
Normally I add antibiotics to my medium (of course not while siRNA treatment).
How can I get rid of those small particles from my cells?
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It must be preventive
Prevent increased sweating and maintain hygiene in detail by appropriate means.
Do not wear anybody else's shoes.
In the summer period wear light and wide clothes, as well as open shoes.
In public places, such as sports clubs, pools and shared showers, wear shoes, or do not go barefoot.
If swelling or redness occurs on the skin, contact a dermatologist immediately. Do not use corticosteroid fat without prior examination because it mask infection, but it does not prevent its further spread.
When there is a decrease in pet hair, contact a veterinarian, as this may be a fungal infection.
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While reviving MRC-5 cells it gets attached to the plate in around 8 hours. But this time its not adhering. I have revived this cell earlier it revived, but this time its not. what can be possible reason.
freezing media was 10% DMSO with 90% FCS. Cells revived in 10 % FCS containing DMEM media.
looking forward for troubleshooting...
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I am also using the serum to 20 % in media. the cells are growing well
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The black thing in picture.
I change all of my materials and change my place but I see them after passage 1.they are float amd my cells are alive in that media.
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Hello, Shirin! Shirin Toosi
Did you find out what it is? I also have the same result.
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I prepared KRB using the recipe:
Krebs-Ringer-Phosphate-HEPES (KRPH) Buffer – pH 7.4
--20 mM HEPES,
--5 mM KH2PO4,
--1 mM MgSO4,
--1 mM CaCl2,
--136 mM NaCl, 
--4.7 mM KCl
Everything was fine, but when I started adding HEPES (after all the reagents dissolved), precipitate is formed. Tried thrice but precipitate is repeated. Also left for overnight stirring but the precipitate is not cleared.
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I got it from abcam and it worked pretty well. Its one the component of glucose uptake kit.
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Adherent tumor-derived cells in 96-well plates.  Want to measure a highly expressed gene and a housekeeper.
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our team just launched a new addition to the Cells-to-Ct product family - the Fast Advanced next gen kit https://www.thermofisher.com/order/catalog/product/A35374