Conference PaperPDF Available
Borlaug Global Rust Initiative
M. Solh et al BGRI 2012 Technical Workshop • 14 September 2012, Beijing, China
The growing threat of stripe rust worldwide
M. Solh1, K. Nazari1, W. Tadesse1 and C.R. Wellings2
1International Center for Agricultural Research in the Dry Areas (ICARDA), P.O. Box 5466, Aleppo, Syria; 2The
University of Sydney, Plant Breeding Institute, Private Bag 4011, Narellan NSW 2567, Australia. Email:
k.nazari@cgiar.org
Keywords: breeding, mitigation, resistance, rusts, strategy, surveillance, wheat
Abstract
Stripe rust of wheat (yellow rust) is a recurring production constraint in the majority of wheat growing areas
of the world. The transboundary nature of the pathogen coupled with its current virulence capabilities,
favorable environmental conditions, sometimes overlapping and/or continuous cultivation of susceptible
varieties in stripe rust-prone zones, and genetic uniformity of certain recent ‘mega-cultivars’ were major
driving forces in stripe rust epidemics worldwide. Breeding for resistance must continue be the central
pillar of stripe rust control, and for this to be effective there must be adequate pathogen monitoring
combined with commitment to identify and incorporate diverse sources of resistance, preferably of the
durable type. Deployment of resistance will only be successful if it is combined with high yield and
appropriate end-use quality to meet the needs of farmers and consumers. Suitable seed systems need to be
in place for timely distribution of varieties. This paper deals with the historical impacts and current status of
stripe rust epidemics and highlights the need for regional and global collaboration in mitigating the global
impact of this disease.
Introduction
Wheat was among the first of the domesticated food crops and for more than 10,000 years has been the basic
staple food for most of the world. It is the most widely grown cereal crop in the world and one of the central
pillars of global food security. About 650 million tonnes of wheat was produced worldwide on 217 million
hectares in 2010 with a productivity level of about 3 t/ha-1 (FAO 2012). After the quantum leap of the Green
Revolution, wheat yields have been rising by only 1.1% per year, a level that falls far short of the demand of a
population that is growing 1.5% or more annually. According to some estimates, global wheat production must
increase by at least 1.6% annually to meet a projected wheat demand of 760 million tonnes by 2020 (Dixon et al.
2007). This is however, very challenging with the current scenario of climate change, increasing drought/water
shortage, soil degradation, declining supply and increasing cost of fertilizers, increasing demand for bio-fuel, and
new virulent pathogen and pest strains.
Stripe rust epidemics have frequently occurred in the USA (particularly the Pacific Northwest region of North
America), South America (central and southern wheat production areas), North Africa (Morocco, Algeria and
Tunisia), East Africa (Ethiopia and Kenya), East Asia (northwest and southwest China), South Asia (India, Pakistan,
and Nepal), Australasia (Australia and New Zealand), the Nile Valley and Red Sea (Egypt and Yemen), West Asia
(Lebanon, Syria, Turkey, Iran, Iraq, and Afghanistan,), Central Asia (Kyrgyzstan, Uzbekistan, Tajikistan, and
Turkmenistan), Caucasus (Georgia, Armenia and Azerbaijan), and Europe (UK, northern and southern France, the
Netherlands, northern Germany, Denmark, Spain, and Sweden). Regular regional crop losses in the range 0.15%
and sometimes up to 25% have been recorded due to stripe rust. However, individual crop losses of up to 80%
were reported in the widespread epidemic in the Middle East and North Africa in 2010, when initial infection
occurred on susceptible wheat varieties at early growth stages. Considering the epidemiological factors and the
history of recurrent epidemics, the wheat areas in Africa (eastern and northern countries), the Middle East, the
Caucasus region, and West and South Asia now appear to comprise a single epidemiological zone hence any
new pathotype that evolves in one country in the region is likely to disperse to the entire region.
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M. Solh et al BGRI 2012 Technical Workshop • 14 September 2012, Beijing, China
Although stripe rust is historically considered a disease of lower temperature regions, its relatively recent
introduction and establishment in Australia and South Africa suggest a wider level of adaptation. The more
recent spread of two new pathotypes/pathotype groups that largely replaced and expanded the range of stripe
rust in Australia, central USA, and across CWANA and Europe have exacerbated the situation. These pathotypes
appear not only to have the ability to adapt to higher temperatures (and therefore the potential to adapt to
climate change), but have undergone rapid mutational changes in Australia, North America and northern
Europe to overcome a number of specific resistance genes deployed in wheat and triticale. With current climate
change predictions, winters are likely to become warmer and the likely consequence is earlier stripe rust
infection and spread and hence more damaging epidemics throughout all wheat growing areas.
Regional impacts of stripe rust
Several worldwide stripe rust epidemics have occurred in recent decades with potential to inflict regular
regional crop losses in the range of 0.15%, with rare events giving losses of 525% (Wellings 2011). Stripe rust
can cause 100% yield loss in susceptible cultivars if infection occurs in early growth stages (Chen 2005), and this
is likely to be exacerbated in regions with mild winter periods and significant levels of pathogen survival
between cropping seasons.
North America
Stripe rust has been historically considered a common disease of wheat in North America since its first detection
in 1915 but was not considered a destructive disease in the US from the 1930s until the late 1950s (Line 2002).
However, it became increasingly important from the late 1950s and early 1960s (Chen et al. 2002). Since then,
stripe rust has been considered the most significant disease of wheat in western North America, and from the
1980s became increasingly important in the south-central USA and the central Great Plains in certain seasons.
Comprehensive reviews have dealt with the distribution of stripe rust, yield losses, status of resistance of
commercial wheat varieties, and fungicide application in the USA (Line 2002; Chen 2005). During 20002007,
stripe rust occurred in at least 15 US states each year with yield losses estimated at more than 6.5 million tonnes
(Chen et al. 2010). However, yield loss was estimated at 2.2 million Mt (87 million bushels) in the severe 2010
epidemic, and the additional cost of fungicide application was estimated at $30 million in Washington State
alone (X.M. Chen pers comm). In 2011, stripe rust was not a large problem in the Great Plains due to widespread
drought, although the Pacific Northwest was even more affected by the disease than in 2010. Based on the stripe
rust level in experimental fields and on crop growth stage, the potential yield loss on susceptible varieties was
estimated to exceed 70%. For the 2012 crop, yield losses were predicted to reach 50% in highly susceptible
wheat varieties.
Europe
Stripe rust has been considered one of the most damaging diseases of wheat in Europe for more than a century
(Hovmøller and Justesen 2007). It is the most common wheat rust in a region spanning northern France, the
Netherlands, northern Germany, Denmark, and the UK (Bayles et al. 2000). Northwestern Europe is considered a
source of new pathotype variability due to intensive breeding for resistance that led to the use of major genes
(Stubbs 1988). Epidemics have also occurred in southern Europe, but less frequently. Virulence for almost all
seedling resistance genes, either present singly or in various combinations, has generally been found following
their deployment in commercial cultivars (Stubbs 1985; Johnson 1988). A comprehensive survey conducted
during the 1960s and 1970s estimated average annual grain yield losses of 10% in Europe (Zadoks and Rijsdijk
1984). Despite favorable environmental conditions in Europe, stripe rust has been broadly under control since
the epidemics of the late 1980s and early 1990s, possibly due to successful deployment of resistance in modern
European cultivars, as well as the widespread use of fungicides (Schmits 2003, cited in Hovmøller and Justesen
2007). Nevertheless, failure of resistance genes continues to be observed as consequence of mutation. Virulence
for Yr17 (widely introduced into European cultivars in the early 1990s) was first detected as a single pathotype in
the UK in 1994 and this pathotype was subsequently detected in Denmark in 1997 (Justesen et al. 2002), then in
France and Denmark in 1997 and 1998, respectively (Hovmøller et al. 2002). This observation indicated that
northern Europe remained a single stripe rust epidemiological zone (Hovmøller and Justesen 2007). In France,
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Borlaug Global Rust Initiative
M. Solh et al BGRI 2012 Technical Workshop • 14 September 2012, Beijing, China
stripe rust occurs most frequently in the north, with the most devastating epidemics occurring in the 1980s
(Mboup et al. 2012; de Vallavieille-Pope et al. 2011).
In 2009, stripe rust spread rapidly and overcame resistance in triticale cultivars in Denmark. This resulted from a
new pathotype, different from previously characterized Pst pathotypes in Denmark, and caused a 7.5 t/ha grain
loss. A recent epidemic of wheat stripe rust in Spain is being investigated as a likely introduction (M. S.
Hovmøller pers comm).
Australasia
Australia produces 20-25 million tonnes of wheat annually. Wellings and McIntosh (1990) stated that a single Pst
pathotype was introduced into eastern Australia in 1979 and moved to New Zealand) in 1980. More than 20 new
closely related pathotype derivatives were subsequently detected over two decades. A new exotic pathotype
was reported in Western Australia for in 2002 (Wellings et al. 2003). This pathotype was virulent for Yr6, Yr7, Yr8,
Yr9, and YrA, and avirulent for Yr1, Yr2 (Heines VII), Yr3, Yr4, Yr5, Yr10, Yr15, Yr17, and several uncharacterized
resistances in the differential set. It was clearly exotic because it was pathogenically and molecularly distinctive
from the pathogen population in eastern Australia at that time. During 2003-2006, an estimated $40-90 million
was spent annually on fungicides by Australian farmers (Wellings 2007). Pathotypes virulent for Yr17 and Yr27
are currently considered a serious threat to wheat growing areas in Australia. Despite periodic epiphytotics and
occasional exotic pathotype introductions, the national breeding program for rust resistance in Australia is
considered a success in containing the worst effects of rust epidemics. Murray and Brennan (2009) estimated the
value of the national breeding effort for resistance at $AUS million 438, 431 and 152, respectively, for stem rust,
stripe and leaf rust.
Central and West Asia and Northern Africa (CWANA)
Reports indicate that at least three widespread stripe rust epidemics have occurred in this region since the
1970s. In each case the epidemics were considered a consequence of favorable environmental conditions,
emergence and subsequent wide distribution of new virulent pathotype/s, and most notably, deployment of a
narrow genetic base of resistance in recently released popular cultivars. Importantly, local susceptible cultivars in
all three epidemics made very significant contributions to disease development and crop loss.
A major factor in the epidemics of the 1970s was the widespread cultivation of susceptible local cultivars
together with improved varieties based on Yr2 resistance. Siete Cerros, Kalyansona, PV 18A, Indus 66, Mexipak,
Ouds and Mivhor 77 were planted across wide areas including North Africa, the Indian sub-continent, the Middle
East, the East African highlands, Iran and China (Saari and Prescott 1985).
The second classical example of stepwise regional dispersal of the stripe rust pathogen was the widespread
distribution of Yr9-virulent pathotypes during 19851997, following initial detection in the Horn of Africa. These
pathotypes subsequently migrated northwards into CWANA, and progressively in a west-east direction that
eventually included the Indian sub-continent. This caused severe crop losses in widely grown cultivars covering
more than 20 million hectares. In 1993 and 1995, stripe rust epidemics occurred in most wheat-growing areas in
Iran and caused in excess of 30% crop loss. Estimated grain losses were in the order of 1.5 million Mt in 1993 and
one million tons in 1995 (Torabi et al. 1995). In Turkey, the wheat cv Gerek 79 grown on more than one million
hectares endured losses of 26.5% due to the stripe rust epidemic of 1991 (Braun and Saari 1992).
In the southern region of West Asia, severe epidemics of stripe rust were also recorded. In Yemen losses in grain
yield were in the range 10-50% during 1991-1996 (Bahamish et al. 1997). These epiphytotics occurred in crops
seeded in both the main and off seasons. In Central Asia a stripe rust epidemic in Azerbaijan in 1996 caused
significant yield losses. In 1997, the wheat crop in Tajikistan incurred greater than 60% loss (Yahyaoui et al. 2002).
The facultative winter wheat regions of Uzbekistan and southern Kazakhstan frequently report stripe rust
incidence, with recent severe epidemics occurring in 2009 and 2010.
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M. Solh et al BGRI 2012 Technical Workshop • 14 September 2012, Beijing, China
In Ethiopia, epiphytotics occurred in 1977, 1980-1983, 1986, 1988, and 1990. Yield losses in 1988 were severe in
bread wheat, and as high as 58% on cv Dashen (Badebo and Bayu 1992). Ethiopia and Yemen form an ecological
unit in regard to rust epidemiology and may have an important role in inoculum spread and virulence changes
across the CWANA region.
Following the Yr9 virulence-driven epidemics, the Yr9-susceptible varieties were extensively replaced with
CIMMYT-derived germplasm (e.g. cvs Kauz, Atilla, Opata, Nacozari, Buckbuck, and Crow). The resistances in many
of the replacement cultivars, including the mega-cultivars PBW343 (in India), Inquilab 91 and Bakhtwar (in
Pakistan), Chamran and Shiroudi (in Iran), Kubsa (in Ethiopia), and Cham 8 (in Syria) were later reported to be
based on Yr27, an all-stage resistance gene effective against the Yr9-predominant pathotypes of that time. The
third episode of regional stripe rust epidemics developed when these resistant varieties showed increased rust
levels, mainly in Pakistan, India, and southern Iran. Loss of effectiveness of Yr27 resistance in cvs PBW343,
Inquilab 91 and Chamran (in India, Pakistan, and Iran, respectively) were reported during 2002-2004. Although
sporadic stripe rust outbreaks appeared in some areas, unfavorable environmental conditions possibly restricted
rapid increases of the Yr27-virulent pathotypes until 2009 when conducive conditions resulted in severe
epidemics in a number of CWANA countries (Pakistan, Morocco, Algeria, Tunisia, Uzbekistan, Turkey, Iran,
Yemen, Azerbaijan, Georgia, Uzbekistan and Afghanistan). Environmental conditions favoring rust development
continued into 2010, with a mild winter and adequate rainfall in several CWANA countries, resulting in early
stripe rust outbreaks. The consequence was the 2010 stripe rust pandemic throughout the major wheat-growing
areas in CWANA and Caucasus countries, causing very high yield losses, particularly in Syria where, for example,
cultivar Cham 8 (with Yr27) occupied over 70% of the wheat area. Despite favorable environmental conditions in
many areas in CWANA in 2011 and 2012, severe stripe rust epidemics did not eventuate, illustrating the year-to
year variability of plant disease and its consequences. In 2010, the absence of resistant varieties in Ethiopia led to
more than US$3.2 million expenditure on fungicides, and over 750,000 ha were sprayed against stripe rust in
Iran. All major wheat cultivars grown in Uzbekistan, Morocco, Iraq, Azerbaijan, Afghanistan, and Tajikistan were
susceptible. A devastating epidemic occurred across the Central Plateau in Turkey where the susceptible cv
Gerek 79 predominated.
India, Pakistan and China
Following the Green Revolution in the mid-1960s, wheat production in India incrementally increased to the
present level of 86 Mt in 2010-11 (Sharma and Saharan 2011). Stripe rust is an important disease in India,
particularly in northwestern regions and the northern hills. During the 2010-11 season, it was severe in several
areas, particularly where the majority of varieties was susceptible. However, timely fungicide intervention largely
averted major crop damage. Pathotypes with virulence for Yr9 and Yr27 currently predominate in India (Sharma
and Saharan 2011).
With 22.8 million ha of wheat and total wheat production exceeding 100 million Mt, China is the world’s largest
wheat producer (Wan et al. 2004). Stripe rust epidemics are major recurrent problems that can annually affect
more than 20 million ha resulting in inter-regional epidemics (Li and Zeng 2000) with reported yield losses
totaling 14.38 Mt in the severe epidemics in 1950, 1964, 1990, and 2002. China is considered a unique
epidemiological zone and is considered to have the largest independent epidemic region. Extensive surveys in
the last 60 years indicated very high pathogenic variability (Wan et al. 2004) and breeding has been the main
focus of mitigation. Despite successes, stripe rust remains the most destructive wheat disease in China (W. Q.
Chen pers comm).
Stripe rust is a serious threat to wheat production in northern and central-west areas of Pakistan. High
production losses were reported in 1995 when cv Pak 81 (synonym Veery#5, carrying Yr9) predominated. This
epidemic was attributed to Yr9-virulent Pst pathotypes. As elsewhere in the region, stripe rust epidemics in
Pakistan fall into three periods: before 1993 when Yr9 was effective; 1993-2002 when Yr9-virulence was
widespread in major wheat-growing areas; and after 2002 with the occurrence of virulence for Yr27. The two
mega-cultivars Pak 81/ Pirasabak 85, and Inquilab 91, became susceptible due to ineffectiveness of Yr9 in
1994/95 and of Yr27 in 2002, respectively, resulting in significant yield losses. Yield losses of 20% were estimated
as a consequence of Yr9 virulence. The high-yielding cultivar Seher 2006, which is resistant to Yr27-virulent
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pathotypes, was to replace Inquilab 91, but became susceptible to leaf rust illustrating the seriousness of leaf
rust in Pakistan and the need for multiple rust resistances.
Minimizing the impacts of stripe rust epidemics
A. Coordinated pathogen monitoring
The rapid spread of highly virulent and aggressive Pst strains, and the genetic uniformity of mega-cultivars
across large areas, emphasizes the relevance of pathogen surveys covering larger areas (Hovmøller et al. 2011).
In response to the need for a global rust survey, an important step towards a unified and intensive Pst survey
was taken in 2008 when ICARDA, CIMMYT, and Aarhus University launched the Global Rust Reference Center
(GRRC) at Aarhus University, Flakkebjerg, Denmark (Hovmøller et al. 2010). The Center is accessible year-round
for rust samples from all countries. One purpose of the establishment of the GRRC, which has become part of
BGRI, is to complement existing stripe rust and stem rust surveillance efforts by ICARDA, CIMMYT, and the NARs,
particularly in developing countries. The principal objectives of the GRRC are:
1. Facilitating an early global warning system for transboundary spread of pathotypes through:
a. Pathogen fingerprinting for rapid detection of incursions on a global scale and on understanding
dispersal pathways
b. Assessment of pathogenic variability and aggressiveness to determine wheat varieties at immediate
risk
c. Risk analysis of rust pathogen adaptation to changing climates
2. Securing unique pathogen resources to assist breeding for rust resistance
3. Providing and facilitating specialized training in epidemiology, population genetics, and pathogen evolution
4. A global source of publically available information on the cereal rusts and rust pathogen virulence surveys
The success of the GRRC will depend on global communication networks that allow rapid and free exchange of
information to inform local advisory personnel in a timely and effective manner. National pathotyping capability
will nevertheless be crucial in managing the large sample volumes necessary for effective regional surveillance
of Pst populations. The GRRC will be a valuable reference for local pathology teams in gaining confidence in
pathotype identity and confirming the potential of newly identified variants.
B. Resistance gene monitoring in commercial cultivars
Unless a comprehensive understanding of resistance genes in major cultivars within and between regions is
established and updated, the outputs of the very best efforts to monitor Pst populations will remain largely
irrelevant. Characterized pathotype collections of Pst are frequently used for postulation of resistance genes in
multi-pathotype seedling tests (Perwaiz and Johnson 1986; Dubin et al. 1989; de Vallavieille-Pope et al. 1990;
Nazari et al. 2008).
The development of diagnostic molecular markers has allowed some genes to be routinely screened in
laboratories supporting breeding programs. The most important gene in this respect is the durable adult plant
resistance gene Yr18 which can now be conveniently monitored without the need for field disease nurseries. An
international effort is needed for collaboration in marker development and utilization of linked markers, and
especially in breeding for multiple gene resistance.
C. Effective resistance breeding
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Development and use of resistant cultivars is widely considered the most economically feasible and
environmentally appropriate way to combat wheat rusts. The international wheat breeding programs at CIMMYT
and ICARDA have been developing high yielding, widely adapted wheat germplasm with resistance/tolerance to
major biotic and abiotic stresses following the classical breeding approaches and strategies whereby crossing
blocks are assembled using hallmark cultivars and elite genotypes; the segregating generations are evaluated in
shuttle breeding and inoculated rust nurseries, followed by key location testing of fixed lines to identify stable
genotypes with appropriate combinations of desired traits. Distribution of elite material globally through the
international nursery and yield trial system has resulted in the release of many high yielding, rust resistant and
widely adapted wheat varieties in many countries. However, use of single resistance genes has repeatedly led
‘boom and bust cyclesas the pathogens adapt and increase as evidenced above. The assembly of adult plant
minor gene resistances (APR) has been the dominant breeding approach for reducing the impacts of ‘boom and
bust’ by CIMMYT and ICARDA over the past decade. The development of molecular markers closely associated
with APR genes will enable the assembly of gene pyramids to combat the evolutionary capacity of Pst. However,
there is only one currently available marker (CsLv34 for selecting Lr34/Yr18) and more research and development
is required in this area. Future strategies may also involve genomic selection (GS) which allows prediction of
genotypic values, and thereby facilitate the selection of multiple minor QTLs associated with presumed non-race
specific APR genes. Conventional breeding approaches complimented with GS and doubled haploid production
systems would also enable the enhancement of breeding efficiency in developing high yielding, widely adapted
genotypes with durable resistance to rusts.
D. Encouraging national action plans
An effective national strategy for combating wheat rusts has four key components: surveillance and rapid
reaction plans; information sharing within and between countries; capacity strengthening for government
officials, extension services, and farmers; and participation in ongoing research programs to develop resistant
wheat cultivars. A multi-faceted approach is needed by countries to combat wheat rusts. The obvious immediate
response to combat rust outbreaks (whether new pathotypes or not) is fungicides wherever possible. Reducing
the cropping area of susceptible cultivars across large areas is perhaps the best insurance against widespread
rust damage. Countries can consider policies to plant a range of resistant wheat types in their farming systems
greatly reducing the risk of widespread epidemics. A long-term plan includes participation in international
research efforts to continually monitor and develop wheat varieties that resist rust and other diseases.
One core issue for planners and policy makers is that stripe rust does not respect national borders. The rusts are
‘social diseases’ and can best be managed by shared agricultural practices and policies agreed across regions.
The fight against rust requires good neighbors, working together. The role of policy makers and global
leadership is crucial if we are to take a significant step forward in minimizing the impacts of this disease.
At the regional and international level there is a need to build a cooperative attitude for information sharing, the
mutual sharing of risk analyses, and trust. The information that needs to be collected and shared across regions
includes data on changing rust disease patterns, wheat variety distribution, changing agronomic practices, and
climate change and weather patterns. The use of ‘rust trap nurseries’ across affected regions is a good example
of an effective strategy for early detection and prevention of stripe rust. As rust moves across a region,
researchers and planners can see the effect of new pathotypes on wheat varieties, and organize for
dissemination of the most resistant varieties for the following season.
E. Accelerated seed delivery system to combat the threat of rusts
Seed is the most efficient mechanism for delivering rust-resistant wheat varieties to farmers. Availability and
access to quality seed is expected to accelerate the adoption and dissemination of new durable rust-resistant
varieties and associated production technologies. However, weaknesses in national seed systems threaten to
impede the diffusion and adoption of replacement varieties.
For an effective seed delivery system, it is important to develop and implement the following approaches:
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a. Fast-track variety testing and release (e.g. adaptation trials) systems by pursuing flexible policy/regulatory
options with partners.
b. Accelerate pre-release seed multiplication of promising lines and large-scale production of released
varieties for distribution through both formal and informal channels.
c. Popularize and promote rust-resistant varieties among farmers (including targeted small-pack seed
distribution) to initiate informal farmer-to-farmer seed sharing and diffusion.
d. Build capacity in technical aspects of seed production and in the provision of infrastructure (training and
critical equipment).
e. Develop methods to rapidly dis-adopt cultivars that are susceptible or whose resistance is at threat from
an emerging new pathotype.
Conclusions
The current challenges facing the global wheat production are complex, and addressing them requires an
understanding of the drivers of past trends and prediction of future changes. Designing an effective research
strategy with application of new breeding tools, such as genome-wide selection and resistance gene pyramids,
needs a matching effort in establishing communication net-works and collaborations. The concept of food
security involves the ability to improve and sustain production consistent with an array of economic and social
measures. NARS must provide a significant contribution to this goal by improving and securing production in
the long term.
Wheat cropping technologies, including varieties, are specifically important factors for controlling pest
outbreaks. Developing and disseminating cultivars with progressively improved rust resistances needs to be
strengthened with technological packages, such as integrated pest management (IPM). In addition to the
availability of resistant varieties that are known to, and accepted by, farmers, country preparedness for stripe
rust outbreaks necessitates the availability of sufficient seed in both quantity and quality. In most cases, the
bottleneck for getting resistant varieties into the field is lack of local and national capacity to rapidly multiply
seeds and deliver them to the market.
Improving national seed production capacity and delivery requires long-term planning and funding, and must
involve government, private enterprise and farmers. There are many complex organizational, procedural and
legal issues that differ between countries, but for success, coordination and timely information-sharing among
all stakeholders - including pathologists, plant protection officers, breeders, seed system and extension agents,
marketers and farmers - are paramount.
An international forum to discuss the way forward in stripe rust R&D was held at ICARDA headquarters in
Aleppo, Syria, in April 2011. The following resolutions from that meeting continue to provide a framework for
the future:
1. Long-term investment is needed to reduce the threat of stripe rust
While a significant investment has been made over the past five years in surveillance and control of stem rust,
stripe rust remains the most significant endemic threat across a majority of the global wheat producing regions.
In spite of its preference for cooler environments, stripe rust is rapidly spreading to new areas where it was not
previously a problem. Aggressive new stripe rust pathotypes are adapting to warmer climates, causing recent
outbreaks at the global level. Comparatively, investments in stripe rust R&D are small and less coordinated
across countries. To reduce the current spread of stripe rust, more investment to support countries to improve
surveillance and in breeding of durable varieties that resist stripe rust.
2. Strategies to address wheat stripe rust disease
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a. Surveillance and information exchange between countries.
b. Planning, awareness, and preparedness to rapidly deliver appropriate seeds and fungicides where they are
needed to arrest the spread of wheat rust diseases.
c. New capacity and skills in ministries, extension services, and at the farm level to develop effective strategies for
managing rust diseases.
d. Crop research for a continued, long-term effort in developing new varieties that are resistant to the emerging
pathotypes of wheat rust.
3. Approaching stripe rust as a social disease
One core issue for planners and policy makers is that stripe rust does not respect national borders. The rusts are
‘social diseases’ and can best be managed by shared agricultural practices and policies agreed across regions.
The fight against rust requires good neighbors, working together. The role of policy makers and global
leadership is crucial if we are to take a significant step forward in minimizing the impacts of Pst.
At the regional and international level there is a need to build a cooperative attitude for information sharing, the
mutual sharing of risk analyses, and trust. The datasets that need collecting and sharing across regions include
information on monitoring of changing rust disease patterns, wheat variety use per region, changing agronomic
practices, and observations of climate change and weather patterns. The use of ‘rust trap nurseries’ across
affected regions is a good example of an effective strategy for early detection and prevention of stripe rust. As
rust moves across a region, researchers and planners can immediately see the effect of new pathotypes of rust
on wheat varieties, and organize for dissemination of the most resistant varieties for the following season.
4. Encouraging the development of national action plans
An effective national strategy for combating wheat rust has four key components: surveillance and rapid
reaction plans; information sharing across countries; capacity strengthening for government officials,
extension services, and farmers; and participation in ongoing research programs to develop resistant wheat
varieties. A multi-faceted approach is needed by countries to combat wheat rusts. Immediate action to combat
new rust pathotypes is often the use of fungicides. Reducing the cropping of susceptible mega-cultivars across
vast wheat growing areas is perhaps the best insurance policy against widespread rust damage. Countries can
consider policies to plant a range of resistant wheat types in their farming systems greatly reducing the risk of
emerging virulent rust types spreading over the entire area. A long-term plan includes participation in
international research efforts to continually develop wheat varieties that resist rust and other diseases.
5. Reducing the impacts of narrow range variety dependence
Diversified cropping of wheat avoiding the sowing of mega-cultivars across large cropped areas is another
possible defense against wheat rust. In most areas of the Middle East, East Africa, and South Asia, farmers have
been planting the same varieties for 2030 years. This practice is not advisable in a situation where stripe rust
pathotypes are mutating and new ones are emerging much more rapidly than in the past and overcoming
resistance in current varieties.
6. Developing a clear approach to seed multiplication and farmer engagement with new, diverse varieties
Efficient and effective seed delivery systems are critical for new crop varieties to reach farmers and bring impacts
in ensuring food security and improving livelihoods of farmers. However, most national seed systems operate
under heterogeneous environments in terms of agro-ecology, farming systems, crops and markets. They face a
broad range of constraints including policy and regulatory frameworks; inadequate institutional and
organizational arrangements; deficiencies in production, processing, and quality assurance infrastructure; and
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lack of trained personnel limiting technical and managerial capacities, compounded by farmers’ difficult socio-
economic circumstances. It is therefore important to assist and strengthen NARS in capacity development,
establish fast-track variety release systems, and participatory demonstration and accelerated seed multiplication
of newly released wheat varieties to ensure fast replacement of existing vulnerable commercial varieties.
References
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Bahamish HS, Al-Ansi A, Baswaid J, Obeid AS, Al-Mahfad K (1997) Studies on wheat rusts in Yemen. Nile Valley
and Red Sea Regional Program on Cool Season Food Legumes and Cereals Annual Report 1996/97, pp34-
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... Ethiopia is suffering from a shortage of wheat grain to feed its people by itself, so it incurs dollars to import wheat grain from other countries. The biotic constraints of wheat production are diseases and abiotic factors, fertility problems, drought, moisture stresses, high cost and limited availability of inputs and poor infrastructure [3][4][5]. Henao et al. ...
... Here in the study area (Enderta district), farmers repeatedly plough their plot of land about three times in one month in the onset of the rainy season and they remove almost 100% of the above ground crop residue for their livestock feed after the crop harvest (see section 2.2.1, I). As many researchers proved, frequent tillage and removal of crop residue from cultivated land results in increased soil runoff, reduces in situ soil moisture and soil fertility as a result decreasing crop yield [4,20,21]. Therefore, soil moisture conservation using appropriate tillage practices and leaving crop residue after crop harvesting are expected to improve soil fertility and wheat productivity. However, the appropriate tillage type and tillage frequency for effective moisture harvesting and sustainable soil fertility improvement for the Enderta district remained to be investigated. ...
Article
Soil tillage is one of the basic agriculture operations. However, the appropriate tillage type, tillage time, and tillage frequency for effective moisture harvesting and sustainable soil fertility were not investigated for Tigray. A field experiment was conducted during 2016 to 2018 in Enderta district. It was done with the objective of evaluating the effect of different tillage practices on wheat productivity. The treatments were (I) permanent bed+ crop residue,(II) three times tillage with furrow, (III) two times tillage with furrow, and (IV) farmer’s practice tillage. A randomized complete block design with three replications was set up. Measurement of soil moisture content was conducted using the gravimetric method. Agronomic parameters were collected and analyzed using GenStat. Marginal rate of return was also estimated from the total revenue and total variable cost. Positive effect was found on soil fertility, soil moisture content, and grain yield due to the tillage practice and crop residue. Permanent bed+ crop residues and three tillage furrow increased soil moisture content, organic carbon, and total nitrogen, as well as the yield and yield components at the second and third year of experimentation. The highest grain yield 2952 kg ha-1 and biomass yield 8582 kg ha-1 were recorded at the three tillage furrow in the third year of experimentation. The 59,056 ETB was the highest net revenue recorded at three times tillage with furrows. From this result, it can be concluded that without adding any additional input instead of changing agricultural operation techniques, the economic benefit of farmers’ could be improved by 48%. Therefore, three tillage practices with furrow is the most economically feasible technology for farmers to increase wheat productivity in the semiarid area of Enderta district.
... This loss of diversity among wheat genotypes has limited productivity and led to sensitivity to biotic and abiotic stresses exacerbated by climate change (Nevo 2009). Therefore, the incorporation of genetic relatives of wheat, especially the wild relatives, into breeding programs is important to expand domestic wheat's genetic base (Nevo and Chen;Solh et al. 2012;Tadesse et al. 2016). However, taxonomically wide hybridizations result in small and shrunken seed, embryo failure and/or endosperm that aborts after 3-5 days of growth; all of which result in very low seed set (Chahal and Gosal 2006;Ogbonnaya et al. 2013). ...
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Immature embryos of F 1 progeny resulting from taxonomically wide hybridizations require tissue culture using complex media to mature, grow and develop into normal and healthy plants. To gain insight as to how progeny of wide-crosses between wild and domestic Triticum species, 12 domestic varieties (Al-Eiz, Babel, Bedhaa, Entisar, Hadbaa, IPA 99, Latifia, Nour, Rabia, Sally, Sham 6, Tamoz 2) were used to determine the genotype response to culture media type. Immature embryos the aforementioned wheat varieties were screened on four media (Murashige and Skoog; MS full strength, ½ strength MS, Gamborg B-5; B-5 full strength, and ½ strength B-5) to determine performance when used as a female in a cross with wild species. The experiment used a completely randomized design with six replications. Traits recorded were final germinations percentage (FGP), shoot length (SL), root length (RL), and root number (RN). Results indicated significant variety x media interaction for all traits studied. Despite the interaction, in a practical sense, all varieties performed adequately on ½ B-5 and varieties Al-Eiz, Entisar, Hadbaa, and Latifia performed well on any of the four media. Tamoz 2 behaved recalcitrantly on all media tested. Data from this study indicated genetic variability among these wheat varieties caused substantial differences in response to each type of media.
... The frequent epiphytotics of the wheat yellow rust pathogens have been visible in Western Europe, Central and East Asia, the Middle East, North and South Africa, North and South America, and Australia (Chen, 2005;Hovmøller et al., 2011;Chen et al., 2014Chen et al., , 2021Ali et al., 2017;Bai et al., 2021). As a result of the loss of stability of the Yr9 and Yr27 genes, high-yielding cultivars in various countries have undergone primary epiphytotics (Solh et al., 2012). The emergence of new aggressive Pst strains represents severe epidemics where crop losses due to pathogens can reach 70%-100% (Chen, 2005;Ali et al., 2014;Zhou et al., 2022). ...
Article
Wheat yellow (stripe) rust (Puccinia striiformis f. sp. tritici) is a dominant type of winter wheat disease. Developing new, highly productive varieties with increased immunological indicators helps to minimize the threat of rust spread. The progressive study searched the sources of resistance to the Pst populations and determined the effectiveness of Yr genes in Southeast Kazakhstan. Immunological studies ensued during 2018–2022 at the Kazakh Research Institute of Agriculture and Plant growing, Almaty, Kazakhstan. Wheat’s 23 isogenic lines and 193 winter wheat genotypes attained evaluation for their reactions against an artificially infectious background of infection mixed with Pst pathotypes. Determining the intensity of virulence, the effectiveness of Yr genes, and the resistance of genotypes to the Pst population transpired in the said region. During the vegetation period, based on weather conditions, the accumulated flow of the source, and the period of infection, wheat genotypes responded differently to the rust disease manifestation. The wheat genotypes found resistant to P. striiformis and promising for selection with immunity reached nomination. Their practical use centered on increasing the immunological potential of the new winter wheat cultivars for creation and further reducing the large-scale use of fungicides and the negative environmental consequences.
... In India, the disease is usually more widespread in cooler areas and prevails in the plains of Jammu and Kashmir, foothills of Punjab, Tarai region of Uttrakhand and parts of Haryana (Sharma and Saharan, 2011). The yellow rust pathogen is fast mutating and may adapt to higher temperatures, resulting in the susceptibility of hitherto resistant cultivars (Solh et al., 2012). It is airborne and can traverse long distances under favourable conditions of proliferation, leading to epidemics (Brown and Hovmoller, 2002;Chen, 2005). ...
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Stripe rust, also known as yellow rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a major threat to wheat production leading to yield losses up to 84%. Due to climate change, new races of the yellow rust pathogen are appearing for which no durable source of resistance has been observed in the present high-yielding varieties. A mutation breeding programme was initiated in two popular varieties, namely PBW343 and HD2967, using gamma-ray and electron beam irradiation. Gamma-ray doses of 250, 300 and 350 Gy and electron beam doses of 150, 200 and 250 Gy were used for seed irradiation. The M2 population was screened in the field from seedling to adult plant stage by spraying a mixture of urediniospores of Pst pathotypes. Disease severity was recorded as the percentage of leaf area covered by the rust pathogen following a modified Cobb’s scale. A total of 52 putative yellow rust resistant mutants in HD2967 and 63 in PBW343 were isolated. The number of mutants was higher in the electron beam irradiated population compared with gamma-rays. The absence of sporulation and spore production of the rust pathogen on the mutants indicated resistance. Mutant plants showing seedling resistance also showed resistance at adult plant stage. Seed yield and its contributing characters were better in the mutants compared with the parents. These rust resistant mutants could be novel sources of stripe rust or yellow rust resistance. The plant-to-row progenies of these mutants were confirmed and characterized in the M 3 generation.
... With air masses, yellow rust spread to New Zealand, as urediniospores covered a distance of 2000 km in a year. Yellow rust causes crop losses in the USA, especially in the areas where early damage and development of the pathogen over several months is possible [48][49][50][51][52][53][54][55][56]. ...
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Вступ. Грибні хвороби, зокрема, жовта іржа, є найбільш шкодочинними і широко розповсюдженими серед захворювань пшениці. Через екологічні та кліматичні зміни збудник жовтої іржі (Puccinia striiformis West. f. sp. tritici) активно поширюється і завдає шкоди посівам пшениці, зокрема й в Україні. Одним з аспектів подолання цієї проблеми може бути моніторинг розповсюдження хвороби та використання сучасних методів молекулярної генетики і селекції для створення нових стійких сортів.Проблематика. Специфічність рас патогена ускладнює боротьбу з грибним захворюванням, а епіфітотії призводять до значних втрат врожаю пшениці. Уникнути суттєвих економічних збитків дозволить застосування сучасних способів виявлення генотипів з ефективними генами стійкості Yr до жовтої іржі за допомогою молекулярно-ге нетичних маркерів.Мета. Узагальнення даних щодо шкодочинності жовтої іржі пшениці та оцінювання можливостей використанняметодів молекулярно-генетичного аналізу генів стійкості.Матеріали й методи. Матеріалом слугували сорти пшениці української селекції, стійкі до відомих рас жовтої іржі. Ідентифікацію генів стійкості до жовтої іржі (Yr10 та Yr36) здійснювали з використанням власних оригінальних праймерів методом полімеразної ланцюгової реакції (ПЛР).Результати. Показано, що втрати врожаю пшениці за ураження рослин жовтою іржею залежать від стійкості сорту, періоду зараження, тривалості розвитку хвороби, кліматичних умов вирощування. На основі молекулярно-біологічних підходів розроблено оригінальні праймери та підібрано оптимальні умови для проведення ПЛР, які дозволяють здійснювати ідентифікацію генів стійкості до жовтої іржі в сортах пшениці м’якої озимої.Висновки. Отримані результати свідчать про відсутність у проаналізованих сортів пшениці української селекції алелів, які можуть забезпечити стійкість до нових шкодочинних рас жовтої іржі. Це потребує залучення у селекційний процес джерел, що є носіями генів Yr10 та Yr36.
... Stripe or yellow rust caused by an obligate pathogen Puccinia striiformis tritici (Pst), is a great threat to production of wheat and grain quality. Wheat crop losses in various regions around the globe have been stated up to 25% and individual crop damages recorded up to 80% when infection occurred on early growth stages in the North African and Middle Eastern region during 2010 (Solh et al., 2012). In recent past yellow rust large incidences have been occurred and damaged wheat production in main wheat growing counties including Australia, Ethiopia, China, United States, Europe, South Africa and South Asia (Chen 2007;Milus et al., 2006;Wellings 2011). ...
Thesis
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The challenge of continuously improving the yield of wheat crop to fulfill demands of burgeoning population is challenged by several abiotic factors and diseases. Among the diseases, leaf, stripe and stem rust infections caused by Puccinia triticina f. sp. tritici, Puccinia striiformis f. sp. tritici and Puccinia graminis f. sp. tritici, respectively are considered for 20-100% production losses based on severity. The basic aim of this research was to identify and utilize the novel sources of triple rust resistance in synthetic hexaploid wheats (SHWs) created from the wild ancestors of wheat and their derivatives (SYN-DERs). The artificial crossing of durum wheat genotypes (2n= 4x = 28; AABB) and Aegilops tauschii (2n = 2x = 14; DD) genotypes to create synthetic hexaploid wheat (2n = 6x = 42; BBAADD) results in the development of synthetic hexaploid wheat accessions. In our first study, we characterized 200 synthetic hexaploid wheats against all three rusts using several rust races at the seedling and the adult plant stages in Queensland, Australia. We identified 57 SHWs resistant to leaf rust, 77 to stripe rust and 69 accessions resistant to stem rust at the seedling stage. Ten accessions were resistant to all three rusts, while 32 SHWs had dual resistance against leaf and stem rusts, and 28 SHWs had dual resistance to stem and stripe rust. We identified 24 SHWs carrying adult plant resistance (APR) for leaf, stripe and stem rust. The diagnostic kompetitive allele specific PCR (KASP) molecular markers for known rust resistance genes revealed that 14 SHW accessions carried Lr34, 85 showed Lr46, and 3 SHWs showed Lr67, while none of the SHW carried Sr2. Studies for genome wide association using 50K SNP array identified 13 marker trait associations (MTAs) for stripe, stem and leaf rust resistance at the seedling plant stage. Similarly, 28 MTAs were identified for stripe, leaf and stem rust resistance at adult plant stage. The genetic resources present in SHWs cannot be directly deployed in farmer’s field due to presence of some undesirable traits. Breeders cross SHWs with adapted bread wheat cultivars to create synthetic derivatives (SYN-DERs) for transfer of gene pool of wild relatives into bread wheat. In our second study, we screened a panel of advanced wheat lines of synthetic derivatives (SYN-DERs) derived from synthetic hexaploid wheat for stripe rust resistance at the seedling and adult stage against five Pst races at two field locations i.e. Islamabad and Nowshera of Pakistan. The proportion of resistant accessions ranged from 38% (Pst 574216) to 80% (Pst 574232) at the seedling stage, and 33% and 15% at Nowshera and Islamabad, respectively. The SYN-DER panel was genotyped with 90K SNP array and genotyping-by-sequencing (GBS) platforms respectively. GWAS identified nineteen (seedling plant resistance) and thirty seven (adult plant resistance) MTAs (marker trait associations) to stripe rust in SYN-DERs. The MTAs for adult stage resistance to stripe or yellow rust on chromosome 2D, 3D, 5D and 7D could be novel alleles and important sources for rust resistance for future breeding programs. Reduction in time for varietal improvement due to rapidly emerging environmental hazards and pathogens is dire necessity of time. In our third study we demonstrated that, newly established speed breeding technique is capable of fast generation development under controlled and light-emitting diode (LED) supplemented glasshouse. Hybridization was carried out in speed breeding glasshouse with fully controlled temperature and light conditions at The University of Queensland, Australia. This study established the rapid development of normally late maturing synthetic hexaploids and their populations, from crossing of particular parents to the next filial generations. We found that various wheat accessions (synthetic-hexaploid-wheats, landraces and bread wheat) matured in 54–64 days under speed breeding glasshouse as compared to 154 days taken under the field conditions. We attempted 236 crosses and produced healthy seeds of first filial generation in two months. Single seeds from each cross were planted and from a single plant we produced maximum 21 healthy spikes and maximum 768 healthy seeds. The speed breeding technique developed for glasshouse/chambers is better for single seed descent breeding method, particularly for wheat breeding. This breeding procedure assisted fast wheat generation development of many genotypes with healthy wheat plants and their viable seeds. Conclusively, our work identified new resistance sources to three rusts, loci underpinning resistance genes along with SNP markers and transferred resistance to adapted sources for breeding and developing mapping populations using accelerated growth method.
... In Morocco, this disease is considered the most important leaf disease according to several years of surveys. It can cause yield losses of up to 97% in epidemic years [16]. The pathogen is transmitted by seeds of ascochyta blight and can infect all aerial parts of the plant, affecting the crop in the vegetative and mature stages [17][18]. ...
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In the context of the search for alternatives to synthetic fungicides to limit their environmental impact, this study explores the potential of the essential oil of Juniperus communis L. The objective is to characterize this essential oil and to study its antioxidant activity. And antifungal. The essential oil was extracted from the aerial part of the plant by hydrodistillation, providing a yield of 0.41 ± 0.04%. Analysis of the chemical composition by gas chromatography-mass spectrometry showed the predominance of Sabinene (33.55%), Limonene (20.67%), α-Pinene (15.21%) and Terpinen-4-ol (10.93%). The predominant compounds represent 80.36% of the total composition. The essential oil also showed strong antioxidant activity, largely due to the presence of Terpinen-4-ol. Finally, the antifungal activity of the essential oil was tested in vitro against Ascochyta rabiei, the causative agent of seed-borne chickpea ascochyta blight. The results showed complete inhibition of the radial growth of the pathogen at low minimum inhibitory concentrations (0.25 µL mL-1). However, the essential oil did not show phytotoxic effects at minimum inhibitory concentrations, although it may reduce the percentage of chickpea seed germination at concentrations above the MIC. These results encourage further research on the use of this essential oil and its major compounds in the formulation of natural phytosanitary products to replace synthetic fungicides.
... However, majority of these varieties are becoming susceptible to rust diseases and put out of production in a few years of their release. Because, yellow and stem rusts epidemics have frequently occurred in Ethiopia (Solh et al., 2012, Singh et al., 2015, Hei et al., 2018, Tolemariam et al., 2018, Meyer et al., 2021. Currently, Ethiopia is becoming factories for production of new and virulent rust pathogens inoculums and wheat farmers are reaching on a situation where they cannot produce wheat without application of fungicides. ...
Article
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Twenty three advanced bread wheat genotypes have been evaluated against two released bread wheat varieties in 2018−19 and 2019−20 in nine diverse environments of Ethiopia. The experiment was laid out using alpha lattice design with three replications. Ten stability models were employed in order to assess stability and performance of 23 advanced bread wheat genotypes. Combined analysis of variance for grain yield has revealed that the environments, the genotypes and GEI effects were significantly different (p<0.001). In the present study, Environments, GEI and Genotypic effects accounted for 88.6%, 8.3% and 3.1% of the total grain yield variation, respectively. Twelve bread wheat genotypes, ETBW 9136, ETBW 9139, ETBW 9065, ETBW 9080, ETBW 9172, ETBW 9396, ETBW 9452, ETBW 9641, ETBW 9642, ETBW 9646, ETBW 9647 and ETBW 9648 produced grain yield that raged from 5.4 to 5.8 t ha-1, indicating their superior yielding potential. ETBW 9136, ETBW 9139, ETBW 9172, ETBW 9396, ETBW 9452, ETBW 9641, ETBW 9642 and ETBW 9646 were the most stable bread wheat genotypes as confirmed by five to ten stability models. However, ETBW 9452, ETBW 9641, ETBW 9642, ETBW 9646, ETBW 9647 and ETBW 9648 were susceptible to either stem rust or yellow rust or both. Providentially, ETBW 9136, ETBW 9139, ETBW 9172 and ETBW 9396 were superior yielding, stable, resistant and moderately resistant to wheat rusts. Thus, these four genotypes were the most promising advanced bread wheat genotypes to be verified and released in low to mid altitude areas of Ethiopia.
Chapter
Sustainable wheat production is challenged by rapid changes in climatic conditions and decreasing water security. Moreover, the ever-escalating global population puts further strain on agricultural systems, particularly on wheat, which is one of the main staple foods in the world. The demand for wheat is emphasized in Africa, where the population is rapidly increasing. Whilst wheat is cultivated in Africa, a large portion of the wheat consumed is imported. Increased wheat cultivation in Africa will improve food security and the African economy by reducing the need for wheat importation. However, for this to be achieved it is essential to expand wheat cultivation into marginal lands to ensure that adequate yield is generated, as the dwindling arable lands alone cannot support sufficient wheat cultivation to meet the demands of the growing population. Marginal lands are challenged by biotic and abiotic stressors. A key element to optimize cultivation of wheat on such lands is the introduction of resilient cultivars that can withstand and thrive under the harsh conditions imposed. Targeted breeding of wheat cultivars that can adapt to specific marginal environments are proposed to improve wheat yield in Africa. Moreover, it is proposed that landraces be considered as a treasure trove of traits of importance for wheat cultivation in sub-optimal agricultural lands. This chapter provides an overview of the current state of wheat cultivation in Africa with the prospect of expanding cultivation to marginal lands. Biotic and abiotic stresses imposed on marginal lands are discussed. Breeding strategies and beneficial traits that may be targeted for breeding are also outlined.
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Stripe rust, caused by Puccinia striiformis f. sp. tritici (PST), has historically been the most frequently destructive disease of wheat (Triticum aestivum) in the western United States and has become a more frequent problem in the central and southeastern states since 2000. The race composition of PST has been determined every year from rust-infected leaf samples of wheat and grasses collected in the United States on a set of 20 differential wheat genotypes. In 2006, a total of 18 races were detected, of which five were detected for the first time. In 2007, a total of 30 races were detected, of which 11 were newly detected. Among the 16 new races detected in 2006 and 2007, PST-127 was the most important as it has the broadest virulence spectrum identified so far (virulent to all 20 differential genotypes except for ‘Moro’, AVS/6*Yr5 (Yr5), and ‘Tres’) and combined virulence factors to ‘Tyee’ (YrTye) and ‘Hyak’ (Yr17 and YrTye) and those common in the race group detected since 2000. The distribution, frequency changes, and evolutionary relationships for races detected from 2000 to 2007 were analyzed. Three major waves of race changes were identified during the eight-year period. From 2000 to 2002, the predominant races were PST-78 and PST-80, which were virulent on wheat genotypes ‘Lemhi’, ‘Heines VII’, ‘Lee’, ‘Fielder’, ‘Express’, AVS/6*Yr8, AVS/6*Yr9, ‘Clement’ and ‘Compair’. Race PST-80 is also virulent on ‘Produra’. From 2003 to 2006, the predominant race was PST-100, with the same virulence formula as PST-80 plus virulence on ‘Yamhill’ and ‘Stephens’. Starting in 2006, races with the same virulence formula of PST-100 plus virulence to Yr1 became predominant in California and races with the virulence of PST-100 plus virulence on Yr10 became predominant in the Pacific Northwest. During 2000 to 2007, races with more virulence factors became more predominant in the United States, indicating that races with increased virulence factors are at an advantage in the pathogen population over those with fewer virulence factors because they are able to infect more wheat cultivars.
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Understanding of long-term virulence dynamics of pathogen populations in response to host resistance gene deployment is of major importance for disease management and evolutionary biology. We monitored the virulence dynamics of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust, over 25 years in France. Virulence dynamics was explained by estimates of area associated with resistance genes carried by farmers' cultivars. The epidemics assessed through disease severity significantly correlated with the number of P. striiformis f. sp. tritici isolates collected each year, used to describe virulence dynamics. In the south, the dominance of the Mediterranean pathotype 6E16 and the cultivation of a susceptible cultivar were associated with an epidemic from 1997 to 1999. In the north, five epidemics occurred due to successive acquisition of virulence to the resistance genes Yr7, Yr6, Yr9, Yr17, and Yr32, either by acquisition of the virulence in the previous dominant pathotype or by incursion or selection of one or two new pathotypes. Frequency of pathotypes with Vr7 and Vr6 declined with the reduction in the cultivation of corresponding Yr gene cultivars, whereas the virulence Vr9 persisted longer than the cultivation of Yr9 cultivars. Although the first pathotypes carrying Vr9 decreased, this virulence persisted in other pathotypes even in the absence of Yr9 cultivars. At the regional level, Yr9 cultivars in the north caused a shift from high Vr6 frequency to high Vr9 frequency whereas, in the central region, where Yr9 cultivars were rare, Vr6 remained prevalent.
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