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A coding polymorphism in NALP1 confers risk for autoimmune Addison's disease and type 1 diabetes

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Variants in the gene encoding NACHT leucine-rich-repeat protein 1 (NALP1), an important molecule in innate immunity, have recently been shown to confer risk for vitiligo and associated autoimmunity. We hypothesized that sequence variants in this gene may be involved in susceptibility to a wider spectrum of autoimmune diseases. Investigating large patient cohorts from six different autoimmune diseases, that is autoimmune Addison's disease (n=333), type 1 diabetes (n=1086), multiple sclerosis (n=502), rheumatoid arthritis (n=945), systemic lupus erythematosus (n=156) and juvenile idiopathic arthritis (n=505), against 3273 healthy controls, we analyzed four single nucleotide polymorphisms (SNPs) in NALP1. The major allele of the coding SNP rs12150220 revealed significant association with autoimmune Addison's disease compared with controls (OR=1.25, 95% CI: 1.06-1.49, P=0.007), and with type 1 diabetes (OR=1.15, 95% CI: 1.04-1.27, P=0.005). Trends toward the same associations were seen in rheumatoid arthritis, systemic lupus erythematosus and, although less obvious, multiple sclerosis. Patients with juvenile idiopathic arthritis did not show association with NALP1 gene variants. The results indicate that NALP1 and the innate immune system may be implicated in the pathogenesis of many autoimmune disorders, particularly organ-specific autoimmune diseases.
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ORIGINAL ARTICLE
A coding polymorphism in NALP1 confers risk for
autoimmune Addison’s disease and type 1 diabetes
NF Magitta
1,2,3
, AS Bøe Wolff
1,4,5
, S Johansson
1,2,6
, B Skinningsrud
7,8
, BA Lie
9
, K-M Myhr
2,10
,
DE Undlien
7,8
, G Joner
11,12
, PR Njølstad
2,13
, TK Kvien
14
, Ø Førre
15
, PM Knappskog
1,2,16
and ES Husebye
4,5,16
1
Centre of Medical Genetics and Molecular Medicine, Haukeland University Hospital, Bergen, Norway;
2
Institute of Clinical Medicine,
University of Bergen, Bergen, Norway;
3
Department of Biochemistry, Muhimbili University of Health and Allied Sciences, Dar es
Salaam, Tanzania;
4
Department of Medicine, Haukeland University Hospital, Bergen, Norway;
5
Institute of Medicine, University of
Bergen, Bergen, Norway;
6
Institute of Biomedicine, University of Bergen, Bergen, Norway;
7
Institute of Medical Genetics, University
of Oslo, Oslo, Norway;
8
Department of Medical Genetics, Ulleva
˚l University Hospital, Oslo, Norway;
9
Institute of Immunology,
Rikshospitalet-Radiumhospitalet University Hospital, Oslo, Norway;
10
Department of Neurology, Haukeland University Hospital,
Bergen, Norway;
11
Department of Paediatrics, Ulleva
˚l University Hospital, Oslo, Norway;
12
Institute of Health Management and Health
Economics, University of Oslo, Oslo, Norway;
13
Department of Paediatrics, Haukeland University Hospital, Bergen, Norway;
14
Department of Rheumatology, Diakonhjemmet Hospital, Oslo, Norway and
15
Department of Rheumatology, Rikshospitalet-
Radiumhospitalet University Hospital, Oslo, Norway
Variants in the gene encoding NACHT leucine-rich-repeat protein 1 (NALP1), an important molecule in innate immunity, have
recently been shown to confer risk for vitiligo and associated autoimmunity. We hypothesized that sequence variants in this
gene may be involved in susceptibility to a wider spectrum of autoimmune diseases. Investigating large patient cohorts from six
different autoimmune diseases, that is autoimmune Addison’s disease (n ¼333), type 1 diabetes (n ¼1086), multiple sclerosis
(n ¼502), rheumatoid arthritis (n ¼945), systemic lupus erythematosus (n ¼156) and juvenile idiopathic arthritis (n ¼505),
against 3273 healthy controls, we analyzed four single nucleotide polymorphisms (SNPs) in NALP1. The major allele of the
coding SNP rs12150220 revealed significant association with autoimmune Addison’s disease compared with controls
(OR ¼1.25, 95% CI: 1.06–1.49, P ¼0.007), and with type 1 diabetes (OR ¼1.15, 95% CI: 1.04–1.27, P ¼0.005). Trends
toward the same associations were seen in rheumatoid arthritis, systemic lupus erythematosus and, although less obvious,
multiple sclerosis. Patients with juvenile idiopathic arthritis did not show association with NALP1 gene variants. The results
indicate that NALP1 and the innate immune system may be implicated in the pathogenesis of many autoimmune disorders,
particularly organ-specific autoimmune diseases.
Genes and Immunity (2009) 10, 120–124; doi:10.1038/gene.2008.85; published online 23 October 2008
Keywords: adrenal insufficiency; type 1 diabetes mellitus; NALP1; NLRP1; autoimmunity; single nucleotide
polymorphism
Introduction
NACHT leucine-rich-repeat protein 1 (NALP1) or NLR
family, pyrin domain containing 1 (NLRP1), is a member
of the nucleotide oligomerization domains (NOD)-like
receptors (NLRs) family, which are cytoplasmic proteins
that sense endogenous microbial products and metabolic
stresses, thereby stimulating innate immunity. In
humans, NLRs include several members of the NALP
family, interleukin-1b(IL-1b)-converting enzyme pro-
tease activating factors, neuronal apoptosis inhibitory
factors, major histocompatibility complex class II trans-
activator and five members of the NOD subfamily. NLRs
associate with other proteins forming multiprotein
cytoplasmic complexes that mediate the activation of
inflammatory caspases, which can further activate pro-
inflammatory cytokines and promote inflammation.
1–4
NALP1 provides a scaffold for the assembly of the
inflammasome that activates caspases 1 and 5, which
subsequently promote the processing and maturation of
the inflammatory cytokines, pro-IL-1b, IL-18 and IL-33.
3–7
Apoptosomes are also formed with NALP1, caspase-2
and caspase-9, suggesting a role for NALP1 in the
regulation of apoptosis and cell survival.
8
The strong
expression of NALP1 in immune cells, particularly the
Langerhans cells and T cells, underscores its potential
role in autoimmunity.
A link between NLRs and autoimmunity was recently
provided by Jin and co-workers,
9,10
who showed an
Received 11 July 2008; revised 23 September 2008; accepted 24
September 2008; published online 23 October 2008
Correspondence: Professor ES Husebye, Institute of Medicine,
Haukeland University Hospital, University of Bergen, Bergen
N-5021, Norway.
E-mail: Eystein.Husebye@helse-bergen.no
16
These authors contributed equally to this work.
Genes and Immunity (2009) 10, 120–124
&
2009 Macmillan Publishers Limited All rights reserved 1466-4879/09
$
32.00
www.nature.com/gene
association of polymorphisms in NALP1 and generalized
vitiligo and vitiligo-associated autoimmune disorders.
They suggested the existence of two distinct associated
regions within the NALP1 locus, one spanning the 50part
of the gene, including the promoter, and another locus
covering the 30end of the gene, tagged by rs6502867. To
examine whether the NALP1 gene could play a more
general role in autoimmunity, we tested the associations
of four single nucleotide polymorphisms (SNPs) with a
number of autoimmune diseases. We found associations
with autoimmune Addison’s disease and type 1 diabetes,
and similar trends for multiple sclerosis, rheumatoid
arthritis and systemic lupus erythematosus. Juvenile
idiopathic arthritis was not associated with any of the
tested SNPs in NALP1.
Results
First, we analyzed patients with autoimmune Addison’s
disease (n¼333), type 1 diabetes (n¼1086) and multiple
sclerosis (n¼502) against two groups of healthy controls
(n¼2269) for association with the tag SNPs rs12150220,
rs2670660, rs878329 and rs6502867 in NALP1. All SNPs
were in the Hardy–Weinberg equilibrium in each
stratum, apart from the marker rs6502867 in the multiple
sclerosis patients (Table 2). The two control cohorts were
genotyped at two different centers, but had almost
identical allele frequencies across all SNPs (P40.76),
and were therefore pooled in all analyses presented. The
SNP rs12150220 (p.Leu155His) was significantly asso-
ciated with both autoimmune Addison’s disease
(OR ¼1.27, 95% CI: 1.06–1.49, P¼0.006) and type 1
diabetes (OR ¼1.16, 95% CI: 1.04–1.28, P¼0.006)
(Table 1). The other three SNPs showed trends of
association with Addison’s disease, whereas two of them
(rs2670660 and rs878329) showed trends of association
with type 1 diabetes (Table 1). The subgroup analyses of
Addison’s disease patients divided into isolated Addi-
son’s disease and autoimmune polyendocrine syndrome
type II (APS II, that is Addison’s disease and auto-
immune thyroid disease and/or type 1 diabetes) did not
differ significantly from the total group of Addison’s
disease patients (data not shown). Similarly, when type 1
diabetes patients were stratified into low, neutral,
intermediate or high-risk human leukocyte antigen
haplotypes, the associations were similar to that of the
total group of type 1 diabetes (data not shown). No
NALP1 association with multiple sclerosis was evident
(Table 1), although the frequency distributions were
skewed in the same direction as those for autoimmune
Addison’s disease and type 1 diabetes. Moreover,
haplotype analysis (data not shown) and conditional
analysis (Table 1) suggested that the association within
this region could best be explained by one disease locus
tagged by rs12150220.
We next extended the analyses by genotyping
rs6502867 and rs12150220 in patients affected with three
other autoimmune diseases, that is rheumatoid arthritis,
systemic lupus erythematosus and juvenile idiopathic
arthritis, and an additional set of healthy controls.
Although a trend for association in the same direction
as autoimmune Addison’s disease and type 1 diabetes
was seen in rheumatoid arthritis and systemic lupus
erythematosus for rs12150220, it did not reach statistical
significance. Juvenile idiopathic arthritis was not asso-
ciated with either of the NALP1 SNPs (Table 2).
Linkage disequilibrium (LD) analysis showed the
existence of strong LD between the exon 3 SNP
rs12150220 and the two SNPs upstream of the gene
(rs2670660 and rs878329), whereas very little LD seemed
to extend to rs6502867 located in the 30part of the gene
Table 1 NALP1 allelic association results; a comparison of patients from three groups of autoimmune diseases and 2269 healthy controls
SNP bp Alleles Genotype (%) Patient groups Genotype (%) OR L95 U95 P-value Conditional
on rs12150220
P-value
rs6502867 5361052 C/T 5.2, 34.9, 59.9 AAD (n¼333) 6.1, 39.9, 54.0 0.83 0.68 1.01 0.06 0.3
TID (n¼1084) 5.6, 35.6, 58.9 0.96 0.85 1.09 0.51 0.8
MS (n¼502)
a
7.3, 30.4, 62.3 1.01 0.84 1.20 0.94 0.5
AAD+TID 5.7, 36.6, 57.7 0.93 0.83 1.04 0.19 0.8
rs12150220 5426091 T/A 21.5, 51.3, 27.2 AAD (n¼333) 15.4, 52.0, 32.6 1.27 1.06 1.49 0.006
TID (n¼1084) 18.9, 49.2, 31.9 1.16 1.04 1.28 0.006
MS (n¼502) 20.5, 49.7, 29.9 1.08 0.93 1.23 0.30
AAD+TID 18.1, 49.9, 32.0 1.18 1.08 1.30 0.0007
rs2670660 5459730 G/A 20.7, 49.7, 29.6 AAD (n¼333) 13.9, 55.4, 30.7 1.18 0.99 1.39 0.06 0.2
TID (n¼1084) 17.6, 49.7, 32.7 1.14 1.02 1.27 0.02 0.8
MS (n¼502) 18.4, 50.2, 31.4 1.09 0.94 1.25 0.23 0.4
AAD+TID 16.7, 51.0, 32.3 1.15 1.04 1.27 0.007 0.5
rs878329 5493974 C/G 20.9, 49.4, 29.7 AAD (n¼333) 16.0, 50.9, 33.0 1.18 1.00 1.39 0.05 0.6
TID (n¼1084) 18.4, 49.9, 31.8 1.10 0.99 1.22 0.08 0.7
MS (n¼502) 20.3, 48.7, 31.1 1.04 0.90 1.19 0.59 1.0
AAD+TID 17.8, 50.1, 32.1 1.11 1.01 1.23 0.03 0.6
Abbreviations: AAD, autoimmune Addison’s disease; bp, nucleotide position; L95, lower boundary of the 95% confidence region;
MS, multiple sclerosis OR, odds ratio; SNP, single nucleotide polymorphism; TID, type 1 diabetes; U95, upper boundary of the 95%
confidence region.
a
Not in the Hardy–Weinberg equilibrium.
NALP1 and autoimmunity
NF Magitta et al
121
Genes and Immunity
(Supplementary Table 1). These LD observations were
consistent with the LD pattern generated from genotype
data from HapMap samples (CEU) (http://www.
hapmap.org/index.html), which showed that intron 3
marks the boundary between two distinct blocks of LD
with very little LD in between (Supplementary Figure 1).
Discussion
NALP1 is believed to mediate inflammation and auto-
immunity partly due to its ability to associate with the
adapter protein ASC, caspase-1 and caspase-5, to form
inflammasomes that are central in the activation of pro-
inflammatory IL-1b.
3,5,8
Polymorphisms of NALP1 have been reported to
confer risk for vitiligo and/or extended autoimmune/
inflammatory disorders in Caucasian patients from the
United Kingdom and the United States,
9
and more
recently from Romania.
10
The current report provides further evidence of the
involvement of NALP1 in the pathophysiology of
autoimmune diseases. The association of a polymorph-
ism in NALP1 with autoimmune Addison’s disease and
type 1 diabetes, combined with the lack of significant
association with the systemic autoimmune disorders
systemic lupus erythematosus and juvenile idiopathic
arthritis, may indicate a specific role in organ-specific
autoimmunity. However, the lack of statistical signifi-
cance for an association between genetic variants in
NALP1 and the systemic diseases tested here might also
be a result of the lack of statistical power.
We found that the major allele of rs12150220 in NALP1
was associated with increased risk of disease, whereas
the earlier reported risk of vitiligo and complex
autoimmunity was associated with the minor allele.
9
Our result was verified by sequencing eight samples
(data not shown), to ensure that here we report the
correct association. The discrepancy may be due to
population differences in allele frequencies, well known
from studies of the major histocompatibility complex
(MHC).
11
Contrary to our results, a recent genome-wide
association study of type 1 diabetes and rheumatoid
arthritis implicated neither chromosome 17 nor the
NALP1 gene.
12,13
However, none of the SNPs tested were
highly correlated with the SNP that we have found to be
associated with autoimmunity. Actual genotyping of
rs12150220 in a Wellcome Trust Case Control Consortium
(WTCCC) 15 K scan (British population) revealed no
significant statistical differences between patients with
multiple sclerosis and controls (http://www.wtccc.
org.uk/info/summary_stats.shtml). The relatively weak
effect of the association in addition to ethnic variations of
the studied cohorts could explain some of the divergence
of the data. It can be noted that the minor allele
frequencies for the control groups observed in the
WTCCC study varied slightly compared with this study.
Despite the relatively large number of cases and
controls ascertained in this study we do not have
sufficient power to reach genome-wide significance.
The P-values are presented without correction for
multiple comparisons. Using a classical conservative
Bonferroni correction for the primary analysis would set
the study-wide significance threshold to Po0.004
(N¼12, four SNPs and three phenotypes), which is
slightly lower than the P-values detected for AAD and
T1D separately, i.e. 0.007 and 0.005, respectively (Table 2).
However, a Bonferroni correction might be too conser-
vative given that three of the four SNPs tested are highly
correlated. We also argue that the general trend for
increased risk in all but one of the disease groups studied
combined with the P-value of 0.0005 for the pooled
autoimmune Addison’s disease and type 1 diabetes
samples suggest that the results might reflect a biological
effect rather than a type 1 error.
More studies of well-characterized patients with
various autoimmune diseases should be performed to
gain more information on the involvement of the NALP1
Table 2 NALP1 allelic association results; a comparison of patients from six groups of autoimmune diseases and 3273 healthy controls
Controls (n¼3273) Cases Allelic test
SNP Alleles Genotype MAF Patient groups Genotype MAF OR L95 U95 P-value
rs6502867 C/T 161/1075/1888 0.78 AAD (n¼333) 19/124/168 0.74 0.82 0.68 0.99 0.04
TID (n¼1084) 58/372/615 0.77 0.94 0.84 1.06 0.35
MS (n¼502)
a
30/125/256 0.77 0.99 0.83 1.18 0.92
RA (n¼945) 43/328/549 0.77 0.99 0.88 1.12 0.90
SLE (n¼156) 10/52/88 0.76 0.91 0.69 1.19 0.51
JIA (n¼505) 32/159/295 0.77 0.97 0.83 1.14 0.69
Addison+TID (n¼1417) 77/496/783 0.76 0.91 0.82 1.02 0.10
rs12150220 T/A 688/1611/878 0.53 AAD (n¼333) 49/166/104 0.59 1.25 1.06 1.49 0.007
TID (n¼1084) 202/525/340 0.56 1.15 1.04 1.27 0.005
MS (n¼502) 98/238/143 0.55 1.08 0.93 1.23 0.32
RA (n¼945) 181/418/270 0.55 1.09 0.98 1.20 0.11
SLE (n¼156) 28/73/51 0.58 1.20 0.95 1.52 0.12
JIA (n¼505) 109/251/138 0.53 1.00 0.87 1.14 0.96
AAD+TID (n¼1417) 251/691/444 0.57 1.18 1.08 1.28 0.0005
Abbreviations: AAD, autoimmune Addison’s disease; JIA, juvenile idiopathic arthritis; L95, lower boundary of the 95% confidence region;
MAF, major allele frequency; MS, multiple sclerosis; OR, odds ratio; RA, rheumatoid arthritis; SLE, systemic lupus erythematosus; SNP, single
nucleotide polymorphism; TID, type 1 diabetes; U95, upper boundary of the 95% confidence region.
a
Not in the Hardy–Weinberg equilibrium.
NALP1 and autoimmunity
NF Magitta et al
122
Genes and Immunity
locus in autoimmunity, but there are several lines of
evidence that lends support to this notion. NALP1
belongs to the CATERPILLER family of protein char-
acterized by nucleotide-binding and leucine-rich
domains
14
with functions in controlling immune and
inflammatory responses. Maybe the best-studied mem-
ber of this group is the MHC class II transactivator
(MHC2TA) crucial for the expression of MHC class II
molecules. Mutations in the MHC2TA gene gives rise to
the bare lymphocyte syndrome, a fatal condition where
patients succumb in bacterial, viral, fungal and proto-
zoan infections.
14
Intriguingly, polymorphisms in the
MHC2TA locus is associated with a number of auto-
immune diseases, among them Addison’s diseases.
15
Mutations in another gene of this family known as
caspase recruitment domain 15 (CARD 15)orNOD2 is
associated with Crohn’s disease,
16
early-onset sarcoidosis
and Blau syndrome characterized by granulomatous
synovitis, non-granulomatous uveitis and cranial neuro-
pathies.
14,17
Mutations in NALP3 coding for cryopyrin are
causative for the auto-inflammatory diseases, such as
familial cold autoinflammatory syndrome, the Muckle-
Wells syndrome and neonatal-onset multisystem inflam-
matory disease.
14
The three diseases are now considered
to be a continuum referred to as cryopyrin-associated
periodic syndrome. Most of the mutations are found in
the NACHT domain, close to where rs12150220 in
NALP1 is located. This indirectly supports that the
Leu/His amino acid variation at position 155 modulates
NALP1 function and the way inflammasomes processes
microbial products.
IL-1b, one of the mediators of inflammasome activa-
tion, has been shown to be cytotoxic to insulin-producing
islet cells in vitro.
18
Possibly, variation in the inflamma-
some activation could influence antigen presentation and
subsequently tolerance to self. Functional studies of
NALP1 variants and association studies with other
disorders are needed to further elucidate NALP1’s
possible role in autoimmune diseases.
Patients and methods
Patients and controls
All together, 333 Norwegian patients with autoimmune
Addison’s disease were recruited from a national
registry of organ-specific autoimmune diseases. The
diagnosis was based either on a low basal serum cortisol
and high adrenocorticotropic hormone or on a patholo-
gical adrenocorticotropic hormone stimulation test. A
total of 145 patients had type 1 diabetes and/or thyroid
diseases in addition to Addison’s disease, that is APS II.
The cohort of patients with type 1 diabetes consisted of
1086 individuals with disease onset before 17 years of
age, recruited from the nationwide Norwegian Child-
hood Diabetes Registry from 2002, as detailed else-
where.
19
They were all diagnosed according to the
EURODIAB criteria.
20
The human leukocyte antigen
haplotypes for type 1 diabetes were grouped as high
risk, intermediate risk, neutral risk and low risk.
19
Furthermore, a total of 502 patients with definite multi-
ple sclerosis,
21
945 patients with rheumatoid arthritis, 156
systemic lupus erythematosus patients and 505 juvenile
idiopathic arthritis patients were included. All rheuma-
toid arthritis and lupus patients fulfilled the American
College of Rheumatology criteria,
22,23
and the juvenile
idiopathic arthritis patients were classified according to
the International League of Associations for Rheumatol-
ogy criteria.
24
Information on demographic variables of
the patients is summarized in Table 3. A total of 3273
anonymous healthy Norwegian blood donors or donors
from the Norwegian bone marrow donor registry were
used as controls. All patients and controls provided
informed written consent. Relevant medical research
ethics committees approved the study.
SNPs selection and genotyping
On the basis of earlier studies by Jin et al.
9,10
we selected
representative SNPs across the NALP1 gene, tagging the
two autoimmunity-associated regions, SNP rs6502867,
located in intron 15 of the NALP1 gene, and another LD
block tagged by rs12150220 in exon 3 of NALP1, and two
promoter region SNPs (rs2670660 and rs878329). The
SNP rs12150220A/T (p.Leu155His) was also selected due
to its potential functional significances, as it changes a
leucine to histidine in exon 3. Genotyping was per-
formed by commercially available Taqman assays
(Applied Biosystems, Foster City, CA, USA).
TaqMan reactions were set up based on the manufac-
turer’s protocol and the samples were run on an
ABI7900HT II Fast Real-Time instrument. Allelic dis-
crimination was performed as suggested by the manu-
facturer, and analyzed using the SDS software (v. 2.3).
The automated genotype calling was supplemented by
manual inspection by two independent persons and the
results compared.
Sequencing
We sequenced the region covering the rs12150220 A/T
non-synonymous SNP in eight known patient samples to
confirm which strand was detected by the TaqMan assay.
The PCR reactions were set up in a standard manner
and the products were purified using ExoSAP-IT
(USB Corporation, Cleveland, OH, USA). We then
Table 3 Description of the patient cohorts included in the study
Patient groups No. of patients Females (%) Mean age of onset in years (range)
Autoimmune Addison’s disease 333 61 36.1 (12–82)
Type 1 diabetes 1084 47 9.2 (10–17)
Multiple sclerosis 502 64 32.1 (14–58)
Systemic lupus erythematosus 156 84 31.6 (8.1–81.4)
Juvenile idiopathic arthritis (JIA) 505 65 3.2 (0.8–15.3)
a
Rheumatoid arthritis (RA) 945 76 51.4 (23–70)
a
a
The mean ages of the JIA and RA patients were calculated based on 148 and 214 patients, respectively.
NALP1 and autoimmunity
NF Magitta et al
123
Genes and Immunity
sequenced the coding strands of the region surrounding
the SNP using ABI prism BigDye terminator kit v.3.1 and
an ABI3730 DNA analyzer (Applied Biosystems). The
sequences were analyzed using CLC Combined Work-
bench v. 3 (CLS Bio, Cambridge, MA, USA).
Statistical analysis
The Progeny software (Progeny Software Inc., Nova
Scotia, Canada) was used for handling of the genotype
data. The data were transferred to the Plink software
25
in
which all the genetic association tests were performed.
For the conditional analysis, we used logistic regression
with rs12150220 genotypes included as co-variate. The
Haploview software
26
was used to investigate the
linkage LD pattern both in our data set and in HapMap
data. P-values o0.05 were considered significant, and all
P-values were presented without correction for multiple
testing. A formal Bonferroni correction for the number of
tests performed for the primary hypothesis (four SNPs
tested in three diseases) would require a study-wide
significance threshold of Po0.004.
Acknowledgements
We are indebted to each patient and the Norwegian Bone
Marrow Registry for contributing with DNA samples for
healthy controls, and The Norwegian Study Group for
Childhood Diabetes for collection of type 1 diabetes
samples. Vibeke Lilleby and Inge M Gilboe are thanked
for collecting the lupus samples. Berit Flatø and Anne
Marit Selvaag, Rikshospitalet-Radiumhospitalet Medical
Centre, are acknowledged for collecting the juvenile
idiopathic arthritis samples. Furthermore, we thank Siri
Fla
˚m, Rikshospitalet, Sigrid Erdal, Haukeland University
Hospital, and Alice Stormyr and Hanne Akselsen,
Ulleva
˚l University Hospital, for help with genotyping.
The study was supported by grants from The Seventh
Framework Programme ‘Euradrenal,’ The Western and
South-Eastern Regional Health Authorities, the Norwe-
gian Research Council and the University of Bergen.
References
1 Tschopp J, Martinon F, Burns K. NALPs: a novel protein
family involved in inflammation. Nat Rev Mol Cell Biol 2003; 4:
95–104.
2 Martinon F, Tschopp J. NLRs join TLRs as innate sensors of
pathogens. Trends Immunol 2005; 26: 447–454.
3 Martinon F, Hofmann K, Tschopp J. The pyrin domain: a
possible member of the death domain-fold family implicated
in apoptosis and inflammation. Curr Biol 2001; 11: R118–R120.
4 Ting JP, Davis BK. CATERPILLER: a novel gene family
important in immunity, cell death, and diseases. Annu Rev
Immunol 2005; 23: 387–414.
5MacalusoF,NothnagelM,ParwezQ,Petrasch-ParwezE,
Bechara FG, Epplen JT et al. Polymorphisms in NACHT-LRR
(NLR) genes in atopic dermatitis. Exp Dermatol 2007; 16: 692–698.
6 Martinon F, Gaide O, Petrilli V, Mayor A, Tschopp J. NALP
inflammasomes: a central role in innate immunity. Semin
Immunopathol 2007; 29: 213–229.
7 Martinon F, Tschopp J. Inflammatory caspases: linking an
intracellular innate immune system to autoinflammatory
diseases. Cell 2004; 117: 561–574.
8 Martinon F, Burns K, Tschopp J. The inflammasome: a
molecular platform triggering activation of inflammatory
caspases and processing of proIL-beta. Mol Cell 2002; 10:
417–426.
9 Jin Y, Mailloux CM, Gowan K, Riccardi SL, LaBerge G, Bennett
DC et al. NALP1 in vitiligo-associated multiple autoimmune
disease. N Engl J Med 2007; 356: 1216–1225.
10 Jin Y, Birlea SA, Fain PR, Spritz RA. Genetic variations in
NALP1 are associated with generalized vitiligo in a Romanian
population. J Invest Dermatol 2007; 127: 2558–2562.
11 Undlien DE, Lie BA, Thorsby E. HLA complex genes in type 1
diabetes and other autoimmune diseases. Which genes are
involved? Trends Genet 2001; 17: 93–100.
12 Wellcome Trust Case Control Consortium. Genome-wide
association study of 14 000 cases of seven common diseases
and 3000 shared controls. Nature 2007; 447: 661–678.
13 Todd JA, Walker NM, Cooper JD, Smyth DJ, Downes K,
Plagnol V et al. Robust associations of four new chromosome
regions from genome-wide analyses of type 1 diabetes. Nat
Genet 2007; 39: 857–864.
14 Ting JP, Kastner DL, Hoffman HM. CATERPILLERs, pyrin
and hereditary immunological disorders. Nat Rev Immunol
2006; 6: 183–195.
15 Skinningsrud B, Husebye ES, Pearce SH, McDonald DO,
Brandal K, Boe Wolff A et al. Polymorphisms in CLEC16A and
CIITA at 16p13 are associated with primary adrenal insuffi-
ciency. J Clin Endocrinol Metab 2008; 93: 3310–3317.
16 Hugot JP, Chamaillard M, Zouali H, Lesage S, Cezard JP,
Belaiche J et al. Association of NOD2 leucine-rich repeat
variants with susceptibility to Crohn’s disease. Nature 2001;
411: 599–603.
17 Church LD, Cook GP, McDermott MF. Primer: inflammasomes
and interleukin 1beta in inflammatory disorders. Nat Clin
Pract Rheumatol 2008; 4: 34–42.
18 Helqvist S, Zumsteg UW, Spinas GA, Palmer JP, Mandrup-
Poulsen T, Egeberg J et al. Repetitive exposure of pancreatic
islets to interleukin-1 beta. An in vitro model of pre-diabetes?
Autoimmunity 1991; 10: 311–318.
19 Bjornvold M, Undlien DE, Joner G, Dahl-Jorgensen K,
Njolstad PR, Akselsen HE et al. Joint effects of HLA, INS,
PTPN22 and CTLA4 genes on the risk of type 1 diabetes.
Diabetologia 2008; 51: 589–596.
20 EURODIAB ACE Study Group. Variation and trends in
incidence of childhood diabetes in Europe. Lancet 2000; 355:
873–876.
21 Poser CM, Paty DW, Scheinberg L, McDonald WI, Davis FA,
Ebers GC et al. New diagnostic criteria for multiple sclerosis:
guidelines for research protocols. Ann Neurol 1983; 13:
227–231.
22 Arnett FC, Edworthy SM, Bloch DA, McShane DJ, Fries JF,
Cooper NS et al. The American Rheumatism Association 1987
revised criteria for the classification of rheumatoid arthritis.
Arthritis Rheum 1988; 31: 315–324.
23 Tan EM, Cohen AS, Fries JF, Masi AT, McShane DJ, Rothfield
NF et al. The 1982 revised criteria for the classification of
systemic lupus erythematosus. Arthritis Rheum 1982; 25:
1271–1277.
24 Petty RE, Southwood TR, Manners P, Baum J, Glass DN,
Goldenberg J et al. International League of Associations for
Rheumatology classification of juvenile idiopathic arthritis:
second revision, Edmonton, 2001. J Rheumatol 2004; 31:
390–392.
25 Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA,
Bender D et al. PLINK: a tool set for whole-genome association
and population-based linkage analyses. Am J Hum Genet 2007;
81: 559–575.
26 Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and
visualization of LD and haplotype maps. Bioinformatics 2005;
21: 263–265.
Supplementary Information accompanies the paper on Genes and Immunity website (http://www.nature.com/gene)
NALP1 and autoimmunity
NF Magitta et al
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Genes and Immunity
... In Vitiligo, innate immunity is a crucial link between innate immunity and oxidative stress. NALP, located on chromosome 17p13, is pivotal in regulating innate immunity and is associated with various autoimmune and inflammatory diseases [11]. ...
Article
Full-text available
Purpose of Review The primary objective of this extensive literature review was to explore emerging therapeutic modalities for Vitiligo, with the aim of identifying promising avenues for treatment. These modalities encompass various techniques such as melanocyte transplantation for repopulation and innovative pharmacological interventions aimed at modulating immune responses. This review aims to shed light on the theories underlying Vitiligo pathogenesis and evaluate the efficacy of a range of therapeutic interventions and preventive measures associated with the condition. Recent Findings Cutting-edge research in the field of Vitiligo has uncovered several promising avenues for future investigation. These include the detection of catecholamines in the urine and blood of affected individuals, which may be associated with neural dysfunction and contribute to melanocyte destruction. Another intriguing theory centers on epidermal immune infiltration, which triggers an autoimmunity that targets and eliminates melanocytes. Additionally, regulating the levels of X-box protein 1 (XBP1), which is elevated during oxidative and endoplasmic reticulum stress, may reduce cytokine production, a critical factor in the demise of melanocytes. Finally, the application of genome-wide association studies (GWAS) offers new prospects for simultaneously addressing both the degenerative and autoimmune dimensions of the condition. Summary Recognizing the increasing importance of patient-centered care, which considers the emotional and social aspects of Vitiligo, calls for a thorough approach to its management. Exploring the complexities of Vitiligo and investigating innovative treatment options hold promise for improved outcomes and enhanced quality of life for those affected.
... The NALP1 gene is located on chromosome 17 and it takes part in controlling of inflammation and apoptosis [14][15][16]. There is an association between NALP1 gene polymorphisms and autoimmune diseases such as vitiligo, Addison's disease, type 1 diabetes, celiac disease, systemic lupus erythematosus, rheumatoid arthritis and systemic sclerosis [17][18][19][20][21][22][23]. ...
Article
Full-text available
Introduction: Vitiligo is a pigmentary disorder associated with a selective loss of melanocytes in the skin, its appendages and mucous membranes. Aim: The aim of the study was to evaluate the association between the rs2476601 polymorphism of the PTPN22 gene, the rs2670660 and rs6502867 polymorphisms of the NLRP1 gene and the rs1847134 and rs1393350 polymorphisms of the TYR gene and vitiligo. Another aim was to compare the gene expression in lesional and symmetrically non-lesional skin of vitiligo patients and healthy controls. Material and methods: The experimental group consisted of 42 patients and the control group consisted of 38 healthy volunteers. The polymorphisms of the genes were assessed with PCR-RFLP technique and gene expression with qRT-PCR technique. Results: We found that the CT genotype of the PTPN22 rs2476601 polymorphism is more frequent in vitiligo patients, in the case of the NLRP1 rs2670660 polymorphism it was the AG genotype, in the NLRP1 rs6502867 polymorphism they were the CT and CC genotypes and in the TYR rs1393350 polymorphism it was the AG genotype. There was no association between vitiligo and the TYR rs1847134 polymorphism. We found statistically significant differences in gene expression in the lesional and symmetrical non-lesional skin of vitiligo patients compared to the control group. Conclusions: Our analysis showed genotypes predisposing to vitiligo. We found that the gene expression is different not only in lesional but also in non-lesional skin of vitiligo patients, what may change the approach to treatment of the disease.
... Similarly, NLRP1 gain-of-function mutations are also associated with multiple self-healing palmoplantar carcinoma and familial keratosis lichenoides chronica through spontaneous inflammasome activation [59]. In addition to tumors, coding polymorphism in NLRP1 increases the risk for autoimmune diseases [60]. The detailed mechanisms linking NLRP1 mutation and these diseases need further investigation. ...
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Inflammasomes are macromolecular platforms formed in response to damage-associated molecular patterns (DAMPs) and pathogen-associated molecular patterns, whose formation would cause maturation of interleukin-1 (IL-1) family members and gasdermin D (GSDMD), leading to IL-1 secretion and pyroptosis respectively. Several kinds of inflammasomes detecting different types of dangers have been found. The activation of inflammasomes is regulated at both transcription and posttranscription levels, which is crucial in protecting the host from infections and sterile insults. Present findings have illustrated that inflammasomes are involved in not only infection but also the pathology of tumors implying an important link between inflammation and tumor development. Generally, inflammasomes participate in tumorigenesis, cell death, metastasis, immune evasion, chemotherapy, target therapy, and radiotherapy. Inflammasome components are upregulated in some tumors, and inflammasomes can be activated in cancer cells and other stromal cells by DAMPs, chemotherapy agents, and radiation. In some cases, inflammasomes inhibit tumor progression by initiating GSDMD-mediated pyroptosis in cancer cells and stimulating IL-1 signal-mediated anti-tumor immunity. However, IL-1 signal recruits immunosuppressive cell subsets in other cases. We discuss the conflicting results and propose some possible explanations. Additionally, we also summarize interventions targeting inflammasome pathways in both preclinical and clinical stages. Interventions targeting inflammasomes are promising for immunotherapy and combination therapy.
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NLRP inflammasomes are a group of cytosolic multiprotein oligomer pattern recognition receptors (PRRs) involved in the recognition of pathogen-associated molecular patterns (PAMPs) and danger-associated molecular patterns (DAMPs) produced by infected cells. They regulate innate immunity by triggering a protective inflammatory response. However, despite their protective role, aberrant NLPR inflammasome activation and gain-of-function mutations in NLRP sensor proteins are involved in occurrence and enhancement of non-communicating autoimmune, auto-inflammatory, and neurodegenerative diseases. In the last few years, significant advances have been achieved in the understanding of the NLRP inflammasome physiological functions and their molecular mechanisms of activation, as well as therapeutics that target NLRP inflammasome activity in inflammatory diseases. Here, we provide the latest research progress on NLRP inflammasomes, including NLRP1, CARD8, NLRP3, NLRP6, NLRP7, NLRP2, NLRP9, NLRP10, and NLRP12 regarding their structural and assembling features, signaling transduction and molecular activation mechanisms. Importantly, we highlight the mechanisms associated with NLRP inflammasome dysregulation involved in numerous human auto-inflammatory, autoimmune, and neurodegenerative diseases. Overall, we summarize the latest discoveries in NLRP biology, their forming inflammasomes, and their role in health and diseases, and provide therapeutic strategies and perspectives for future studies about NLRP inflammasomes.
Article
Several gain‐of‐function variants in NLRP1 cause a distinctive autoinflammatory disease reported under different names featuring mainly skin and mucosal involvement and variable systemic signs. Here, we report a new case of NLRP1‐associated autoinflammatory disease in a 6‐year‐old Peruvian girl, who presented with confluent hyperkeratotic plaques that drained purulent material with subsequent scarring. A c.3641C > G (p. Pro1214Arg) variant that has been previously been reported was found in NLRP1 and was not present in either parent. The term NLRP1‐associated autoinflammatory disease with epithelial dyskeratosis (NADED) is proposed to encompass all reported cases, which have received different nomenclature so far.
Article
Inflammasomes are cytoplasmic protein complexes that play a crucial role in protecting the host against pathogenic and sterile stressors by initiating inflammation. Upon activation, these complexes directly regulate the proteolytic processing and activation of proinflammatory cytokines IL-1β and IL-18 to induce a potent inflammatory response, and inducing a programmed form of cell death called pyroptosis to expose intracellular pathogens to the surveillance of the immune system, thus perpetuating inflammation. There are various types of inflammasome complexes, with the NLRP1 inflammasome being the first one identified in 2002 and currently recognized as the predominant inflammasome sensor protein in human keratinocytes. Human NLRP1 exhibits a unique domain structure, containing both an N-terminal pyrin (PYD) domain and an effector C-terminal caspase recruitment domain (CARD). It can be activated by diverse stimuli, such as viruses, UVB radiation and ribotoxic stress responses (RSR). Specific mutations in NLRP1 or related genes have been associated with rare monogenic skin disorders, such as multiple self-healing palmoplantar carcinoma (MSPC), familial keratosis lichenoides chronica (FKLC), autoinflammation with arthritis and dyskeratosis (AIADK) and dipeptidyl peptidase 9 (DPP9) deficiency. Recent research breakthroughs have also highlighted the involvement of dysfunctions in the NLRP1 pathway in a handful of seemingly unrelated dermatological conditions. These range from monogenic autoinflammatory diseases to polygenic autoimmune diseases such as vitiligo, psoriasis, atopic dermatitis and skin cancers including squamous cell carcinoma (SCC), melanoma and Kaposi's sarcoma. Additionally, emerging evidence suggests further implications of NLRP1 in systemic lupus erythematosus (SLE), pemphigus vulgaris, Addison's disease, Papillon-Lefèvre syndrome and leprosy. The aim of this review is to shed light on the implications of pathological dysregulation of the NLRP1 inflammasome in skin diseases and investigate the potential rationale for targeting this pathway as a future therapeutic approach.
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Autoimmune diseases are characterized by vast alterations in immune responses, but the pathogenesis remains sophisticated and yet to be fully elucidated. Multiple mechanisms regulating cell differentiation, maturation, and death are critical, among which mitochondria-related cellular organelle functions have recently gained accumulating attention. Mitochondria, as a highly preserved organelle in eukaryotes, have crucial roles in the cellular response to both exogenous and endogenous stress beyond their fundamental functions in chemical energy conversion. In this review, we aim to summarize recent findings on the function of mitochondria in the innate immune response and its aberrancy in autoimmune diseases such as rheumatoid arthritis, systemic lupus erythematosus, etc., mainly focusing on its direct impact on cellular metabolism and its machinery on regulating immune response signaling pathways. More importantly, we summarize the status quo of potential therapeutic targets found in the mitochondrial regulation in the setting of autoimmune diseases and wish to shed light on future studies.
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Inflammasome molecules make up a family of receptors that typically function to initiate a proinflammatory response upon infection by microbial pathogens. Dysregulation of inflammasome activity has been linked to unwanted chronic inflammation, which has also been implicated in certain autoimmune diseases such as multiple sclerosis, rheumatoid arthritis, type 1 diabetes, systemic lupus erythematosus, and related animal models. Classical inflammasome activation-dependent events have intrinsic and extrinsic effects on both innate and adaptive immune effectors, as well as resident cells in the target tissue, which all can contribute to an autoimmune response. Recently, inflammasome molecules have also been found to regulate the differentiation and function of immune effector cells independent of classical inflammasome-activated inflammation. These alternative functions for inflammasome molecules shape the nature of the adaptive immune response, that in turn can either promote or suppress the progression of autoimmunity. In this review we will summarize the roles of inflammasome molecules in regulating self-tolerance and the development of autoimmunity.
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The mammalian NLR gene family was first reported over 20 years ago, although several genes that were later grouped into the family were already known at that time. Although it is widely known that NLRs include inflammasome receptors and/or sensors that promote the maturation of caspase 1, IL-1β, IL-18 and gasdermin D to drive inflammation and cell death, the other functions of NLR family members are less well appreciated by the scientific community. Examples include MHC class II transactivator (CIITA), a master transcriptional activator of MHC class II genes, which was the first mammalian NBD-LRR-containing protein to be identified, and NLRC5, which regulates the expression of MHC class I genes. Other NLRs govern key inflammatory signalling pathways or interferon responses, and several NLR family members serve as negative regulators of innate immune responses. Multiple NLRs regulate the balance of cell death, cell survival, autophagy, mitophagy and even cellular metabolism. Perhaps the least discussed group of NLRs are those with functions in the mammalian reproductive system. The focus of this Review is to provide a synopsis of the NLR family, including both the intensively studied and the underappreciated members. We focus on the function, structure and disease relevance of NLRs and highlight issues that have received less attention in the NLR field. We hope this may serve as an impetus for future research on the conventional and non-conventional roles of NLRs within and beyond the immune system.
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Background To study the epidemiology of childhood-onset type 1 insulin-dependent diabetes in Europe, the EURODIAB collaborative group established in 1988 prospective geographically-defined registers of new cases diagnosed under 15 years of age. This report is based on 16 362 cases registered during the period 1989-94 by 44 centres representing most European countries and Israel and covering a population of about 28 million children. Methods Multiple sources of ascertainment were used in most centres to Validate the completeness of registration by the capture-recapture method. Trends in incidence during the period were analysed by Poisson regression, the data from centres within each country being pooled. Findings The standardised average annual incidence rate during the period 1989-94 ranged from 3.2 cases per 100 000 per year in the Former Yugoslav Republic of Macedonia to 40.2 cases per 100 000 per year in two regions of Finland. By pooling over all centres, the annual rate of increase in incidence was 3.4% (95% CI 2.5-4.4%), but in some central European countries it was more rapid than this. Pooled over centres and sexes, the rates of increase were 6.3% (4.1-8.5%) for children aged 0-4 years, 3.1% (1.5-4.8%) for 5-9 years, and 2.4% (1.0-3.8%) for 10-14 years. Interpretation The results confirm a very wide range of incidence rates within Europe and show that the increase in incidence during the period varied from country to country. The rapid rate of increase in children aged under 5 years is of particular concern.
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Full-text available
There is increasing evidence that genome-wide association (GWA) studies represent a powerful approach to the identification of genes involved in common human diseases. We describe a joint GWA study (using the Affymetrix GeneChip 500K Mapping Array Set) undertaken in the British population, which has examined 2,000 individuals for each of 7 major diseases and a shared set of 3,000 controls. Case-control comparisons identified 24 independent association signals at P < 5 10-7: 1 in bipolar disorder, 1 in coronary artery disease, 9 in Crohn's disease, 3 in rheumatoid arthritis, 7 in type 1 diabetes and 3 in type 2 diabetes. On the basis of prior findings and replication studies thus-far completed, almost all of these signals reflect genuine susceptibility effects. We observed association at many previously identified loci, and found compelling evidence that some loci confer risk for more than one of the diseases studied. Across all diseases, we identified a large number of further signals (including 58 loci with single-point P values between 10-5 and 5 10-7) likely to yield additional susceptibility loci. The importance of appropriately large samples was confirmed by the modest effect sizes observed at most loci identified. This study thus represents a thorough validation of the GWA approach. It has also demonstrated that careful use of a shared control group represents a safe and effective approach to GWA analyses of multiple disease phenotypes; has generated a genome-wide genotype database for future studies of common diseases in the British population; and shown that, provided individuals with non-European ancestry are excluded, the extent of population stratification in the British population is generally modest. Our findings offer new avenues for exploring the pathophysiology of these important disorders. We anticipate that our data, results and software, which will be widely available to other investigators, will provide a powerful resource for human genetics research.
Article
There is increasing evidence that genome-wide association (GWA) studies represent a powerful approach to the identification of genes involved in common human diseases. We describe a joint GWA study (using the Affymetrix GeneChip 500K Mapping Array Set) undertaken in the British population, which has examined similar to 2,000 individuals for each of 7 major diseases and a shared set of similar to 3,000 controls. Case-control comparisons identified 24 independent association signals at P < 5 X 10(-7): 1 in bipolar disorder, 1 in coronary artery disease, 9 in Crohn's disease, 3 in rheumatoid arthritis, 7 in type 1 diabetes and 3 in type 2 diabetes. On the basis of prior findings and replication studies thus-far completed, almost all of these signals reflect genuine susceptibility effects. We observed association at many previously identified loci, and found compelling evidence that some loci confer risk for more than one of the diseases studied. Across all diseases, we identified a large number of further signals (including 58 loci with single-point P values between 10(-5) and 5 X 10(-7)) likely to yield additional susceptibility loci. The importance of appropriately large samples was confirmed by the modest effect sizes observed at most loci identified. This study thus represents a thorough validation of the GWA approach. It has also demonstrated that careful use of a shared control group represents a safe and effective approach to GWA analyses of multiple disease phenotypes; has generated a genome-wide genotype database for future studies of common diseases in the British population; and shown that, provided individuals with non-European ancestry are excluded, the extent of population stratification in the British population is generally modest. Our findings offer new avenues for exploring the pathophysiology of these important disorders. We anticipate that our data, results and software, which will be widely available to other investigators, will provide a powerful resource for human genetics research.
Article
The revised criteria for the classification of rheumatoid arthritis (RA) were formulated from a computerized analysis of 262 contemporary, consecutively studied patients with RA and 262 control subjects with rheumatic diseases other than RA (non-RA). The new criteria are as follows: 1) morning stiffness in and around joints lasting at least 1 hour before maximal improvement; 2) soft tissue swelling (arthritis) of 3 or more joint areas observed by a physician; 3) swelling (arthritis) of the proximal interphalangeal, metacarpophalangeal, or wrist joints; 4) symmetric swelling (arthritis); 5) rheumatoid nodules; 6) the presence of rheumatoid factor; and 7) radiographic erosions and/or periarticular osteopenia in hand and/or wrist joints. Criteria 1 through 4 must have been present for at least 6 weeks. Rheumatoid arthritis is defined by the presence of 4 or more criteria, and no further qualifications (classic, definite, or probable) or list of exclusions are required. In addition, a “classification tree” schema is presented which performs equally as well as the traditional (4 of 7) format. The new criteria demonstrated 91–94% sensitivity and 89% specificity for RA when compared with non-RA rheumatic disease control subjects.
Article
Background To study the epidemiology of childhood-onset type 1 insulin-dependent diabetes in Europe, the EURODIAB collaborative group established in 1988 prospective geographically-defined registers of new cases diagnosed under 15 years of age. This report is based on 16 362 cases registered during the period 1989—94 by 44 centres representing most European countries and Israel and covering a population of about 28 million children. Methods Multiple sources of ascertainment were used in most centres to validate the completeness of registration by the capture-recapture method. Trends in incidence during the period were analysed by Poisson regression, the data from centres within each country being pooled. Findings The standardised average annual incidence rate during the period 1989—94 ranged from 3.2 cases per 100 000 per year in the Former Yugoslav Republic of Macedonia to 40.2 cases per 100 000 per year in two regions of Finland. By pooling over centres, the annual rate of increase in incidence was 3.4% (95% Cl 2.5—4.4%), but in some central European countries it was more rapid than this. Pooled over centres and sexes, the rates of increase were 6.3% (4.1—8.5%) for children aged 0—4 years, 3.1% (1.5—4.8%) for 5—9 years, and 2.4% (1.0—3.8%) for 10—14 years. Interpretation The results confirm a very wide range of incidence rates within Europe and show that the increase in incidence during the period varied from country to country. The rapid rate of increase in children aged under 5 years is of particular concern.