Karin Harnesk's research while affiliated with Karolinska Institutet and other places

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Publications (10)


Figure 1: Genetic analysis of Cr2 expression following ventral root avulsion. Regulation of Cr2 expression following VRA is under strong genetic control. Global expressional profiling of injured spinal cords from a F2(DAxPVG) rat intercross (n = 144) reveals a cis-acting expression QTL at the end of chromosome 13 (a–b the black box marks the genetic area around D13Rat49 subsequently fine-mapped in the G12). D13Rat49 PVG alleles are associated with higher Cr2 expression (c). The cis-acting control of Cr2 expression after nerve injury was confirmed in a G12(DAxPVG) advanced intercross line (n = 163) (d). Again, PVG alleles gave rise to higher expression (e). A kinetic study of the injury response in DA and PVG animals with different post-operative survival following VRA revealed that Cr2 is expressed at very low levels in naïve spinal cord but strongly up regulated following injury, particular in PVG (f). n = 5–7 per strain per time-point following VRA. LOD > 3.3 corresponds to p < 0.0001, *p < 0.05, **p < 0.01, and ***p < 0.001. In c and d, the results are presented as mean ± SD and in f as mean ± SEM
Table 1 Sequences for rat RT-PCR primers
Figure 2: Gene expression network of transcripts regulated from D13Rat49 in the F2(DAxPVG) intercross. A co-expression gene network was constructed from all transcripts regulated from D13Rat49. All 31 genes regulated from D13Rat49 were closely interconnected; the association between the genes is based on pair-wise co-variation of expression levels. Cis-regulated genes are marked with red circles, the other genes are regulated in trans. The Cr2 transcript is surrounded by a green ring. Cr2 expression correlated negatively with expression of multiple genes with pro-inflammatory action, for example CD48, CD244, F11r, and Fcgr2a all involved in lymphocyte activation. Conversely, Cr2 expression correlated positively with Sgpl1 and Meis3, genes involved in anti-inflammatory and cellular survival processes. n = 144 F2(DAxPVG) rats
Table 2 Sequences for mouse RT-PCR primers
Figure 3: Glial activation in DA and PVG rats following sciatic nerve transection. Sciatic nerve transaction in DA and PVG rats leads to increased Gfap expression without discernible strain differences (a). Quantification of GFAP immunoreactivity in the dorsal spinal motor nucleus demonstrates more pronounced astrocyte activation in the PVG compared to DA strain (b–d). More intense microglia activation occurs in the DA strain following SNT, as assessed by expression of Mrf-1 and CD11b (e–f), as well as by quantifying Iba1 immunoreactivity (g–j). IL ipsilateral, CL contralateral. Scale bar equals 40 μm. n = 5 + 5 RT-PCR, 6 + 6 IHC; *p < 0.05, **p < 0.01, and ***p < 0.001. The results are represented as mean ± SEM

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Complement receptor 2 is up regulated in the spinal cord following nerve root injury and modulates the spinal cord response
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  • Full-text available

October 2015

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236 Reads

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10 Citations

Journal of Neuroinflammation

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Alexander Berg

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Mikael Ström

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Activation of the complement system has been implicated in both acute and chronic states of neurodegeneration. However, a detailed understanding of this complex network of interacting components is still lacking. Large-scale global expression profiling in a rat F2(DAxPVG) intercross identified a strong cis-regulatory influence on the local expression of complement receptor 2 (Cr2) in the spinal cord after ventral root avulsion (VRA). Expression of Cr2 in the spinal cord was studied in a separate cohort of DA and PVG rats at different time-points after VRA, and also following sciatic nerve transection (SNT) in the same strains. Consequently, Cr2 −/− mice and Wt controls were used to further explore the role of Cr2 in the spinal cord following SNT. The in vivo experiments were complemented by astrocyte and microglia cell cultures. Expression of Cr2 in naïve spinal cord was low but strongly up regulated at 5–7 days after both VRA and SNT. Levels of Cr2 expression, as well as astrocyte activation, was higher in PVG rats than DA rats following both VRA and SNT. Subsequent in vitro studies proposed astrocytes as the main source of Cr2 expression. A functional role for Cr2 is suggested by the finding that transgenic mice lacking Cr2 displayed increased loss of synaptic nerve terminals following nerve injury. We also detected increased levels of soluble CR2 (sCR2) in the cerebrospinal fluid of rats following VRA. These results demonstrate that local expression of Cr2 in the central nervous system is part of the axotomy reaction and is suggested to modulate subsequent complement mediated effects.

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Unbiased Expression Mapping Identifies a Link between the Complement and Cholinergic Systems in the Rat Central Nervous System

December 2013

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554 Reads

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9 Citations

The Journal of Immunology

The complement system is activated in a wide spectrum of CNS diseases and is suggested to play a role in degenerative phenomena such as elimination of synaptic terminals. Still, little is known of mechanisms regulating complement activation in the CNS. Loss of synaptic terminals in the spinal cord after an experimental nerve injury is increased in the inbred DA strain compared with the PVG strain and is associated with expression of the upstream complement components C1q and C3, in the absence of membrane attack complex activation and neutrophil infiltration. To further dissect pathways regulating complement expression, we performed genome-wide expression profiling and linkage analysis in a large F2(DA × PVG) intercross, which identified quantitative trait loci regulating expression of C1qa, C1qb, C3, and C9. Unlike C1qa, C1qb, and C9, which all displayed distinct coregulation with different cis-regulated C-type lectins, C3 was regulated in a coexpression network immediately downstream of butyrylcholinesterase. Butyrylcholinesterase hydrolyses acetylcholine, which exerts immunoregulatory effects partly through TNF-α pathways. Accordingly, increased C3, but not C1q, expression was demonstrated in rat and mouse glia following TNF-α stimulation, which was abrogated in a dose-dependent manner by acetylcholine. These findings demonstrate new pathways regulating CNS complement expression using unbiased mapping in an experimental in vivo system. A direct link between cholinergic activity and complement activation is supported by in vitro experiments. The identification of distinct pathways subjected to regulation by naturally occurring genetic variability is of relevance for the understanding of disease mechanisms in neurologic conditions characterized by neuronal injury and complement activation.


Identification of gene regions regulating inflammatory microglial response in the rat CNS after nerve injury

July 2009

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29 Reads

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12 Citations

Journal of Neuroimmunology

Local CNS inflammation takes place in many neurological disorders and is important for autoimmune neuroinflammation. Microglial activation is strain-dependent in rats and differential MHC class II expression is influenced by variations in the Mhc2ta gene. Despite sharing Mhc2ta and MHC class II alleles, BN and LEW.1N rats differ in MHC class II expression after ventral root avulsion (VRA). We studied MHC class II expression and glial activation markers in BN rats after VRA. Our results demonstrate that MHC class II expression originates from a subpopulation of IBA1(+), ED1(-), and ED2(-) microglia. We subsequently performed a genome-wide linkage scan in an F2(BNxLEW.1N) population, to investigate gene regions regulating this inflammatory response. Alongside MHC class II, we studied the expression of MHC class I, co-stimulatory molecules, complement components, microglial markers and Il1b. MHC class II and other transcripts were commonly regulated by gene regions on chromosomes 1 and 7. Furthermore, a common region on chromosome 10 regulated expression of complement and co-stimulatory molecules, while a region on chromosome 11 regulated MHC class I. We also detected epistatic interactions in the regulation of the inflammatory process. These results reveal the complex regulation of CNS inflammation by several gene regions, which may have relevance for disease.



Differential nerve injury-induced expression of MHC class II in the mouse correlates to genetic variability in the type I promoter of C2ta

June 2009

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22 Reads

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5 Citations

Journal of Neuroimmunology

Major histocompatibility complex (MHC) class II is of critical importance for the induction of immune responses. Levels of MHC class II in the nervous system are normally low, but expression is up-regulated in many disease conditions. In rat and human, variation in the MHC class II transactivator gene (C2ta) is associated with differential expression of MHC class II and susceptibility to autoimmune disease. Here we have characterized the response to facial nerve transection in 7 inbred mouse strains (C57BL/6J, DBA/2J, 129X1/SvJ, BALB/cJ, SJL/J, CBA/J, and NOD). The results demonstrate differences in expression of C2ta and markers for MHC class I and II expression, glial activation, and T cell infiltration. Expression levels of C2ta and Cd74 followed similar patterns, in contrast to MHC class I and markers of glial activation. The regulatory region of the C2ta gene was subsequently sequenced in the four strains (C57BL/6/J, DBA/2J, SJL/J and 129X1/SvJ) that represented the phenotypical extremes with regard to C2ta/Cd74 expression. We found 3 single nucleotide polymorphisms in the type I (pI) and type III (pIII) promoters of C2ta, respectively. Higher expression of pI in 129X1/SvJ correlated with the pI haplotype specific for this strain. Furthermore, congenic strains carrying the 129X1/SvJ C2ta allele on B6 background displayed significantly higher C2ta and Cd74 expression compared to parental controls. We conclude that genetic polymorphisms in the type I promoter of C2ta regulates differential expression of MHC class II, but not MHC class I, Cd3 and other markers of glial activation.


Fine Mapping of Gene Regions Regulating Neurodegeneration

February 2009

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110 Reads

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8 Citations

PLOS ONEPLOS ONE

Damage to nerve cells and axons leading to neurodegeneration is a characteristic feature of many neurological diseases. The degree of genetic influence on susceptibility to axotomy-induced neuronal death has so far been unknown. We have examined two gene regions, Vra1 and Vra2, previously linked to nerve cell loss after ventral root avulsion in a rat F2 intercross between the DA and PVG inbred rat strains. In this study, we use two generations (G8 and G10 cohorts) of an advanced intercross line between DA and PVG(av1) to reproduce linkage to Vra1 and to fine-map this region. By isolating the effect from Vra1 in congenic strains, we demonstrate that Vra1 significantly regulates the loss of motoneurons after avulsion. The regulatory effect mediated by Vra1 thus resides in a congenic fragment of 9 megabases. Furthermore, we have used the advanced intercross lines to give more support to Vra2, originally detected as a suggestive QTL. The results demonstrated here show that naturally occurring allelic variations affect susceptibility to axotomy-induced nerve cell death. Vra1 and Vra2 represent the first quantitative trait loci regulating this phenotype that are characterized and fine mapped in an advanced intercross line. In addition, congenic strains provide experimental evidence for the Vra1 effect on the extent of injury-induced neurodegeneration. Identification of the underlying genetic variations will increase our understanding of the regulation and mechanisms of neurodegeneration.




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Vra4 Congenic Rats with Allelic Differences in the Class II Transactivator Gene Display Altered Susceptibility to Experimental Autoimmune Encephalomyelitis

April 2008

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106 Reads

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18 Citations

The Journal of Immunology

Presentation of Ag bound to MHC class II (MHC II) molecules to CD4+ T cells is a key event in adaptive immune responses. Genetic differences in MHC II expression in the rat CNS were recently positioned to allelic variability in the CIITA gene (Mhc2ta), located within the Vra4 locus on rat chromosome 10. In this study, we have examined reciprocal Vra4-congenic strains on the DA and PVGav1 backgrounds, respectively. After experimental nerve injury the strain-specific MHC II expression on microglia was reversed in the congenic strains. Similar findings were obtained after intraparenchymal injection of IFN-gamma in the brain. Expression of MHC class II was also lower on B cells and dendritic cells from the DA.PVGav1-Vra4- congenic strain compared with DA rats after in vitro stimulation with IFN-gamma. We next explored whether Vra4 may affect the outcome of experimental autoimmune disease. In experimental autoimmune encephalomyelitis induced by immunization with myelin oligodendrocyte glycoprotein, DA.PVGav1-Vra4 rats displayed a lower disease incidence and milder disease course compared with DA, whereas both PVGav1 and PVGav1.DA-Vra4 rats were completely protected. These results demonstrate that naturally occurring allelic differences in Mhc2ta have profound effects on the quantity of MHC II expression in the CNS and on immune cells and that this genetic variability also modulates susceptibility to autoimmune neuroinflammation.


Citations (6)


... This result, particularly in the datasets from cortical tissue devoid of lymphoid follicles, may be to some extent unexpected given the propensity of EBV to infect B lymphocytes and influence the immune response. However, astrocytes and microglia activation, which have a key role in MS inflammatory response (James et al. 2020) in MS, may express the EBV receptor CD21 (Lindblom et al. 2015) and may be infected by the virus in this disorder (Hassani et al. 2018), suggesting that EBV may entertain pathogenic interactions also outside the B cell compartment. Analyses of the most recent MS-GWAS (Consortium 2019b), which shows an enrichment for MS genes in microglia, may clarify this issue, though it is already intriguing that the MS variant with the strongest eQTL in microglia, CLECL1, is an EBNA3C-regulated gene in lymphoblastoid cell lines (Zhao et al. 2011) and is upregulated in tonsillar B cells after CD40 ligation (Ryan et al. was not certified by peer review) is the author/funder. ...

Reference:

Enrichment analysis of GWAS data in autoimmunity delineates the multiple sclerosis-Epstein Barr virus association
Complement receptor 2 is up regulated in the spinal cord following nerve root injury and modulates the spinal cord response

Journal of Neuroinflammation

... Although it was originally thought to be involved in innate immunity in the blood, complement components, including C1q, C3, and their receptors are locally produced in the brain parenchyma (12,13). Growing evidence suggests diverse roles for the complement system in the maintenance of neural circuits during development, aging, and neurological disorders (14,15). ...

Unbiased Expression Mapping Identifies a Link between the Complement and Cholinergic Systems in the Rat Central Nervous System

The Journal of Immunology

... rat strains (7). The congenic DA.VRA1 strain, carrying PVG.1AV1 alleles in the neuroprotective Vra1 region on a DA strain background, was used to fine map Vra1 and several candidate genes were discovered (8). Glutathione S-transferase alpha 4 (Gsta4), a protein involved in the elimination of lipid peroxidation by-products, such as 4-hydroxy-2-nonenal (HNE) (9), was subsequently identified as the strongest candidate gene regulating neurodegeneration in response to VRA (10) and traumatic brain injury in DA.VRA1 congenic rats (11). ...

Fine Mapping of Gene Regions Regulating Neurodegeneration

... Interestingly, depression, anxiety-related disorders and stress have already been associated with the activation and abnormal increase of microglial cells in the CNS [106,205]. Additionally, Diez and colleagues [206] have demonstrated that transcription of MHC Class II proteins in rats is strongly regulated by two regions of chromosomes 1 (Neuinf4) and 7 (Neuinf5) and mildly regulated by three other regions of chromosome 1 (Neuinf8), 7 (Neuinf6) and 10 (Neuinf7). These findings reinforce the high complexity involved in the genetic mechanisms underlying the immune response variability in the CNS. ...

Identification of gene regions regulating inflammatory microglial response in the rat CNS after nerve injury
  • Citing Article
  • July 2009

Journal of Neuroimmunology

... Effect of genetic polymorphisms in C2ta on MHC-II expression in B6NQ.C2ta congenic mice It has previously been shown 35 that there are three singlenucleotide polymorphisms (SNPs) in the type I promoter of C2ta (C57BL/6 versus 129X1/SvJ), which are located at À715, À712 and À402 relative to the transcriptional start site. A bioinformatic analysis of this region using CON-REAL 34 showed that these polymorphic sites could potentially be the binding sites of various regulatory factors, such as nuclear transcription factor and cAMP response element-binding protein (CREB) (see Supplementary material, Fig. S1). ...

Differential nerve injury-induced expression of MHC class II in the mouse correlates to genetic variability in the type I promoter of C2ta
  • Citing Article
  • June 2009

Journal of Neuroimmunology

... The DA.VRA4 strain was generated by transfer of the VRA4 locus from the PVG strain to a DA background, resulting in two identical strains except for the VRA4 locus, the congenic strain (DA.VRA4) and the background strain (DA) [22]. DA.VRA4 and DA founders were provided by Professor Fredrik Piehl. ...

Vra4 Congenic Rats with Allelic Differences in the Class II Transactivator Gene Display Altered Susceptibility to Experimental Autoimmune Encephalomyelitis

The Journal of Immunology