Access to this full-text is provided by The Royal Society.
Content available from Royal Society Open Science
This content is subject to copyright.
Active viscoelastic models for
cell and tissuemechanics
Bahareh Tajvidi Safa1, Changjin Huang2, Alexandre
Kabla3 and Ruiguo Yang1,4,5
1Department of Mechanical and Materials Engineering, University of Nebraska-Lincoln,
Lincoln, NE 68588, USA
2School of Mechanical & Aerospace Engineering, Nanyang Technological University, Singapore
639798, Singapore
3Department of Engineering, University of Cambridge, Cambridge CB2 1PZ, UK
4Department of Biomedical Engineering, and 5Institute for Quantitative Health Science and
Engineering (IQ), Michigan State University, East Lansing, MI 48824, USA
BTS,0000-0003-1280-5319; AK,0000-0002-0280-3531;
RY,0000-0002-1361-4277
Living cells are out of equilibrium active materials. Cell-
generated forces are transmied across the cytoskeleton
network and to the extracellular environment. These active
force interactions shape cellular mechanical behaviour,
trigger mechano-sensing, regulate cell adaptation to the
microenvironment and can aect disease outcomes. In recent
years, the mechanobiology community has witnessed the
emergence of many experimental and theoretical approaches
to study cells as mechanically active materials. In this review,
we highlight recent advancements in incorporating active
characteristics of cellular behaviour at dierent length scales
into classic viscoelastic models by either adding an active
tension-generating element or adjusting the resting length of
an elastic element in the model. Summarizing the two groups
of approaches, we will review the formulation and application
of these models to understand cellular adaptation mechanisms
in response to various types of mechanical stimuli, such as the
eect of extracellular matrix properties and external loadings
or deformations.
1. Introduction
Living cells, their surrounding extracellular matrices (ECM) and
tissues as a whole exhibit viscoelastic properties, that is, having
both an elastic and a viscous behaviour. Mechanical tests are
used to characterize the mechanical properties of cells and tissues
and help us understand and predict cellular behaviour in healthy
or pathological conditions at dierent time scales [1–4]. For
example, experimental studies on cell monolayers devoid of
substrate have reported a viscoelastic solid-like behaviour under
© 2024 The Authors. Published by the Royal Society under the terms of the Creative
Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits
unrestricted use, provided the original author and source are credited.
Review
Cite this article: Tajvidi Safa B, Huang C, Kabla
A, Yang R. 2024 Active viscoelastic models for cell
and tissue mechanics. R. Soc. Open Sci. 11:
231074.
https://doi.org/10.1098/rsos.231074
Received: 24 July 2023
Accepted: 25 February 2024
Subject Category:
Physics and biophysics
Subject Areas:
biomechanics, biomaterials
Keywords:
active model, viscoelasticity, cell modeling, cell
mechanics, tissue mechanics
Authors for correspondence:
Alexandre Kabla
e-mail: ajk61@cam.ac.uk
Ruiguo Yang
e-mail: ryang6@unl.edu
constant strains [5]. In other words, on the time scale of seconds, cell monolayers behave like a
viscous uid and dissipate stress, then reach a plateau in stress on the time scale of minutes, which
is a characteristic of elastic solid materials [5]. On the other hand, cell aggregates exhibit solid-like
behaviour on short time scales, for example, in a few seconds, and uid-like behaviour at time scales
of the order of minutes to hours [4,6,7]. In this case, the behaviour of cell aggregates is similar to
a viscoelastic uid material. Additionally, the mechanisms governing the viscous-like behaviour can
also dier depending on the time scale of load application [8]. For example, on the time scale of tens
of seconds to minutes, stress dissipation occurs owing to the turnover of actin laments and reorgan-
ization of the actomyosin network [4,8,9]. On the time scale of minutes to hours, stress dissipation
mechanisms at the cellular scale, such as oriented cell division and cell rearrangements, can start to
inuence the response to mechanical loadings [8,10–12]. Transitions between uid-like and solid-like
behaviours in living cells can also occur in response to mechanical stimuli. For instance, short-term
uidization has been reported immediately upon strain application, which is usually followed by
stiening [13–16].
The experimental results are often analysed by mathematical models to capture the important
features of the material response, presented in terms of model parameters. These parameters can
then be used for classication, comparison and prediction of the mechanical behaviour of cells and
tissues subjected to other loading conditions [17]. By relating the model parameters to the underlying
biological processes on the molecular and cellular scale, the physical meaning of the parameters can
sometimes be assigned. Since tissues exhibit time-dependent mechanical behaviours [5,18], a common
modelling approach is to consider the cells and tissues as a viscoelastic continuum and to describe their
mechanical response from quantitative mechanical interrogations, often stress–strain relationships, in
terms of a combination of stiness and viscosity, or elastic and loss moduli under dynamic loadings.
These extracted mechanical properties have long been regarded as disease biomarkers [19,20]. For
instance, metastatic cancerous cells exhibit lower stiness than benign cells [21].
Perhaps more importantly, cell mechanics is not only a by-product of the underlying molecular
structure but also a means for cells to actively adapt to environmental cues, in service to a preferred
cellular function, such as cell migration in wound healing [22] and tissue morphogenesis in develop-
ment [23]. Being viscoelastic in nature, cells can dissipate the imposed stress owing to external strains.
However, sometimes this passive response is insucient to maintain the mechanical integrity of the
cell. For instance, cells need to use eective stress relaxation mechanisms such as actin polymerization
to prevent tissue fracture. In other instances, under rapid strain applications, cells may need to stien
or actively pull back to make further deformation dicult, thus preventing further damage to their
cytoskeleton. From the adaptation perspective, the evolving elastic and viscous properties owing to
the active adjustments of cytoskeleton tension can be considered as a way to facilitate the response
and adaptation to external stimuli. Probing active cellular behaviour through the lens of mechanics
is particularly intriguing because it oers a window from which the adaptation can be quantitatively
examined up close with dened mechanical stimuli.
In the cell cortex as well as at the cell population scale, living maer not only responds to exter-
nal forces or deformation as any traditional material would but also often exhibits force-generating
mechanisms emerging from actin polymerization, adhesion dynamics and actomyosin contractility.
This process is referred to as being ‘active’ in this review. Active maer theory is another continuum-
based model used to describe the dynamics of cell cytoskeleton and cell monolayers (reviewed in
[9,24–26]). This type of model is based on the theory of liquid crystals and can be employed to describe
the mechanics of the actomyosin cortex for time scales longer than the turnover time of actin laments
[27]. However, these models rarely capture the way such materials respond to external deformations or
stresses; it remains challenging to capture, both experimentally and theoretically, the impact of active
processes on the mechanical state of living maer.
Experimentally, a common approach is to subject the cellular materials to tension or compression
and then assess their response using stress–strain curves. At the tissue scale, mechanical testing
machines can be used to investigate the macroscopic behaviour of tissue samples (gure 1a) [28,29].
A similar technique has been developed to study the response of cell monolayers when subjected to
compression or tension (gure 1b) [30]. In addition, to examine the microscale characteristics of living
tissues, atomic force microscopy (AFM) and nanoindentation techniques can be employed, where a
probe tip is used to apply forces in the pico-nano Newton range [31,32].
The AFM technique can also be used to study the active and passive behaviour of individual
cells [33–35] and can be adapted for cell pair studies in single-cell force spectroscopy (SCFS), where
a single cell adhered to the cantilever beam serves as the probe tip (gure 1c) [36]. Furthermore,
2
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
various methods are developed to study the response of single cells and cell doublets in tension and
compression tests. For instance, in microplate assays, cells are compressed or stretched between a xed
and a deformable plate [37,38], microbead assays use microbeads to apply force via magnetic [39,40]
or optical tweezers [41–43] (gure 1d), and the micropipee aspiration method involves subjecting
cells to negative pressures and measuring their deformation [44–46] (gure 1d). This method can
also be used for cell pair studies by bringing two cells into contact via micropipees, that is, dual
pipee aspiration (DPA) (gure 1c) [47], or it can be combined with other techniques such as optical
tweezers [48]. Recently, a new micromanipulator device has been introduced that can directly measure
forces in cell pairs under controlled loading conditions, leading to advancements in the precision of
the interrogation of cell pair mechanics (gure 1c) [49]. Dierent techniques have varied ranges of
resolution and loading rates; thus, one has to consider the application requirements when choosing an
experimental technique. For instance, AFM techniques benet from higher spatial resolution and force
sensitivity compared with methods employing micropipee aspiration [50,51].
These experimental techniques are employed to probe cellular response at various temporal and
spatial scales. In addition to measuring the global mechanical behaviour of cells and tissues, these
techniques can also be employed to examine the mechanical properties of specic components of
(a)
(c)
(d)
(b)Tissue
Cell pair
Single Cell
Cell layer
Figure 1. Experimental techniques used to probe cell mechanics in various spatial scales. (a) Mechanical testing machine used to
study the response of tissue samples in compression and tension tests. (b) The recent technique developed for investigating the
mechanical response of cell layers to uniaxial stretch and compression. (c) In cell pair studies, mechanical stimulus is applied through
various methods such as a single cell adhered to a tipless atomic force microscopy (AFM) cantilever in single-cell force spectroscopy
(SCFS), two micropipettes in dual pipette aspiration (DPA) and a microstructure fabricated using two-photon polymerization technique
in single-cell adhesion micro tensile tester (SCATT). (d) Microplate assay is a commonly used method to monitor the force generated
by individual cells when exposed to variations in substrate stiness. Other techniques, such as micropipette aspiration, AFM and optical
and magnetic tweezers, involve applying controlled displacement as the mechanical stimulus and monitoring the forces within cells or
investigating changes in displacement in response to controlled forces.
3
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
cells. For example, micropipee aspiration techniques have been used to investigate the microrheology
of the cell nuclei [52–54]. The monitored stress/strain response of the cellular materials will be the
outcome of both active force-generating and passive mechanisms operating at those scales. From a
modelling perspective, capturing active behaviour requires a mechanism of introducing change to the
otherwise xed viscoelastic models. Researchers over the years have incorporated active adaptation
mechanisms by introducing active empirical mathematical models to link mechanical characteristics to
the underlying biological processes without simulating the details of the underlying chemical signals.
Rheological models for describing the mechanical behaviour of cellularized materials across various
length scales have previously been reviewed [4,15,17,55]. In this article, our primary goal is to focus
on dierent forms of integrating activity into rheological models, emphasizing variations in their
denitions. We here summarized these reported mechanisms into two broad categories. The rst group
integrates a force/stress (force divided by cross-sectional area)-generating element to classic viscoelas-
tic models. This active element can be constant or time-dependent. The second group introduced
mathematical methods that adjust the resting length of an elastic spring or the reference stress-free
shape in two dimensions/three dimensions in classic viscoelastic models. Mathematical models in both
categories are developed in conjunction with specic techniques that probe the active cell response to
various types of mechanical stimuli. In some cases, the active models can be mathematically equiva-
lent, but dierent parameters may oer a beer link with the underlying biology. In this article, we
present a selection of such models, introducing rst the experimental ndings and then focusing on
the formulation and application of each type of active viscoelastic model. We will begin with a short
introduction to the biology of active cell behaviour.
2. Biology of cellular active behaviour
Cell cytoskeleton mainly comprises lamentous proteins that preserve the cell structure, arrange
organelles, and resist, transmit and generate forces [56,57]. These proteins can be categorized into
three groups: microtubules, intermediate laments and actin laments [58]. Active force generation
is realized by actin laments. They are constructed by assembling monomeric actin. Actin-binding
proteins bind to actin laments and form dierent structures, such as the lamellipodium network,
contractile bundles of stress bres and the contractile network of the cell cortex [57,59]. Actin la-
ments are engaged in active processes such as actin treadmilling and force generation by consuming
the energy provided by adenosine triphosphate (ATP) hydrolysis [60–62]. ATP molecules aach to
ATP binding sites on actin monomers, and the ATP-bound actin monomers will be assembled at
the plus/barbed end of the actin laments leading to lament growth [60,63]. ATP molecules will
slowly hydrolyse to adenosine diphosphate (ADP) and the ADP-bound actin monomers will start to
disassemble from the minus/pointed end of the actin laments [60,64]. The process of assembling and
disassembling actin monomers is referred to as actin treadmilling [65]. Actin laments use the energy
from ATP hydrolysis to generate protrusion forces to help cells in spreading and migration [66,67].
Actin treadmilling is also crucial in endocytosis, exocytosis and phagocytosis to engulf large particles
[57].
In addition, ATP hydrolysis provides the energy for contractile stress generation in the actomyosin
network. Myosin motors convert chemical energy from ATP hydrolysis to mechanical energy and slide
actin laments past one another to produce force [68–70]. This process is similar to the shortening of
sarcomeres in muscle cells [37,38,64,70]. The contractile forces generated from this process will then be
transmied to neighbouring cells and the ECM via cell–cell junctions and focal adhesions, respectively
[66,71,72]. At the cell and tissue level, contractile force production controls cellular activities, such as
cell migration [67,73–75], proliferation [76,77], stem cell lineage determination [78,79], tissue regener-
ation [80] and morphogenesis [81,82]. Important for cellular mechanical characterization, contractile
forces also regulate cellular response to substrate stiness and mechanosensing [83]. The active
ATP-dependent processes that are at play in subcellular scales can also regulate cellular response
under various loading conditions at cell and tissue scales [5,59,84,85].
3. Active contractile elements
Rheological models are useful tools to quantitatively analyse the results of mechanical tests. However,
associating the molecular scale origin with the model parameters is challenging, in particular, where
4
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
cell behaviour deviates from the response of traditional passive materials [17]. Thus, adding elements
that represent the active behaviour of cells can equip classic models with the ability to empirically link
the mechanical response to the underlying biological processes.
To represent active cellular dynamics from intracellular contractility, contractile/force-generating
elements (CEs) can be added to standard viscoelastic models. In this section, we will discuss
active CEs that can mimic cell behaviour when they are exposed to dierent types of mechanical
stimuli. We begin with the rst active model, which was presented by Hill to elucidate muscle
contraction and its application in studying mechanosensing in single cells. In the following section,
we will explore an active uid model that considers the transient nature of the actin network to
describe characteristics of the single-cell response to the substrate stiness. In this model frame-
work, tension generation via myosin activity will be denoted by , and regulating mechanisms
of the dynamics of tension build-up will be discussed. Additionally, we will also provide some
examples for both models.
3.1. Muscle contraction dened by the Hill model
Muscles function as intricate biochemical mechanisms that transform chemical energy into mechanical
energy through actomyosin interactions to provide movement in our bodies. Hill proposed the rst
theory to describe muscle contraction back in 1938 [29]. He conducted experiments using the sartorius
muscle of a frog and explained the macro properties of muscles. In these experiments, Hill quantied
both force generation and velocity of length changes in muscles under various loading conditions. The
two endpoints of the curve representing the force–velocity relationship in muscles (gure 2a(i)) were
generated in two extreme cases: zero force (isotonic condition) and zero velocity (isometric condition).
Specically, when force is kept at 0, the muscle can reach its maximum shortening velocity, max.
Similarly, when the muscle is restricted from changing its length, the maximum level of force, that is,
the stall force max, can be generated at the steady-state condition.
Hill proposed an empirical function to describe the correlation between the active force generation,
, and the shortening velocity, , as follows [29]:
(3.1)(+)(+) = (max +)⋅,
where a, b and max +⋅= are constants specic to each muscle type. The Hill model was rst
discovered on frog skeletal muscles. However, later studies have shown that the dimensionless form of
this model with a shape factor =/max =/max ≈0.25 can be used to describe the behaviour of other
muscle types,
(3.2)(+)(+) = (1 + ),
where =
max and =
max [88]. Hill also proposed a phenomenological model to describe muscle
mechanics. The original model consists of a contractile element (CE) that generates force and an elastic
element (SE), as shown in gure 2a. CE is governed by equation (3.2) and SE aects the length and rate
of change in the length of CE during contractions [29,86]. Other forms of this model have also been
introduced by integrating more elastic and viscous elements to account for the viscoelastic properties
of the muscle and its interactions with the connective tissue surrounding muscle bres [89]. The Hill
model has enabled researchers to explore the mechanics of muscles using only a few rheological
parameters. However, the Hill model falls short of elucidating the underlying biological mechanisms
of force generation in muscles [89–91]. Another shortcoming of this model is that it fails to consider
variations in the contractile characteristics of various bre types within muscles and the dependence of
muscle tension on the movement history [89,91]. Modications aimed at enhancing the accuracy of the
Hill-type model predictions are reviewed in [91].
This model is extremely versatile and not only can it be used to describe the behaviour of various
types of muscles, but also it can be adapted and employed to describe force generation in non-muscle
cells and their response to the physical and mechanical properties of their microenvironment [92–94].
Mitrossilis et al. [37] studied the response of a single C2.7 myoblast cell and a 3T3 broblast mounted
between two microplates and showed a time-dependent force generation in single cells in response
to the microplate stiness (gure 2b(iii)). The force–velocity curves for single cells have a similar
shape as the force–velocity curves reported for muscle bres. Moreover, they showed that the reduced
5
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
Hill equation (3.2), with the same shape factor = 0.25 as for muscles, can describe the normalized
shortening speed, =/max versus the normalized force, =/max, as shown in gure 2a(ii). In
these experiments, the maximum force and velocity are measured at innite microplate stiness and
very low stinesses, respectively. Therefore, showing that the coupling between force generation in
cells in contact with their surroundings still follows Hill’s model is quite remarkable, as it implies that
structured muscle actomyosin and cytoskeletal actomyosin exhibit similar behaviours independent of
the network architecture.
In addition, since the same function could explain the experimental results of dierent muscle
types, Huxley suggested that the force–velocity relationship is generic in muscles and proposed a
molecular explanation [95]. This molecular model incorporates the dynamics of the interaction between
actin laments and myosin motors, that is, the number of myosin heads connected to actin laments
and the formation of temporary connections between actin and myosin heads (i.e. cross bridges).
Understanding these dynamics brings valuable insight into the biological processes regulating the
predictions of the Hill model. For instance, cross-bridge-type models have shown that the maximum
Schematic Diagram
of the Model
(a)
(b)
(i)
(i)
(iii)
(ii)
(ii) (iii)
(i) (ii)
(iv)
(c)
Constitutive Equations
The Hill model
Contractile element including the dynamics of cytoskeleton turnover
Time-dependent contractile element
Experimental Results
Figure 2. Models of active contractility relating force/tension generation and the rate of contraction. (a) Model proposed by Hill [29]
to describe muscle contraction [86]. CE serves as a force-generating contractile element and SE is an elastic spring that aects the
dynamics of contraction. (i) Force–velocity curve obtained in Hill’s experiments. (ii) Normalized speed of shortening =/max
and normalized force generation =/max in single cells in response to various substrate stinesses can be represented by the
reduced Hill equation (3.2) [37]. (b) Active uid model proposed to study mechanotransduction in cells [38]. (i) This model accounts
for the transiently cross-linked nature of the actomyosin network and force generation via myosin motor activity. (ii) Equivalent of
the model presented in (i), which has the same constitutive equation. The net eect of two dashpots is similar to one dashpot. (iii)
Evolution of traction force generation over time for low (grey) and high (black) substrate stiness. The two main characteristics of force
generation–time curves, that is, the plateau force and the rate of force generation / are dependent on the substrate stiness
[37]. (iv) The plateau force has a linear relationship with substrate stinesses when the stiness is below 60 nN μm−1 and for higher
values of stiness, saturates [37]. (c) Active Maxwell model that assumes a time-dependent increase in cellular contractile force
with the same prole as actin and myosin accumulation in the RhoA-activated areas [87]. (i) Changes in the local intensity of actin
and myosin in the regions of RhoA activation. (ii) The plateauing exponential function used in the model to represent the stress prole
during activation of RhoA. (iii) Experimental (black) and theoretical (red) evolution of strain energy during intervals of RhoA activation
and relaxation.
6
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
speed of muscle shortening happens owing to the rate of myosin aachment and detachment [89,95]
rather than the extent of lament overlap [96,97]. This model has its limitations as well. For example,
this model does not include the eect of power stroke (i.e. a crucial step in the force generation cycle in
muscles where myosin heads pull the actin laments and generate force) [89,91].
Further aempts have been made to incorporate various aspects of molecular biology with the Hill
model. An example involves a model that integrated the dynamics of actin lament slippage during
the process of force generation, allowing the prediction of the relationship between force generation
and stiness of micropillars [98]. This model was further rened to account for the temporal evolution
of the force over time by integrating an internal variable, specically representing the progression of
myosin motor stalling over time [99]. Despite these improvements, this model falls short in explaining
the limiting factors for the maximum force generation and maximum speed of shortening of the cells.
A model that addresses these shortcomings is discussed in the next section.
3.2. Active element that includes the dynamic turnover of the actomyosin network
Étienne et al. developed an active uid model to link the fundamental features of cellular molecular
mechanics with a passive phenomenological model [38]. These features encompass the transient nature
of the actomyosin network, force generation via myosin motor activity and actin polymerization. The
transiently cross-linked actomyosin network is modelled as a Maxwell uid in series with an active
element , mimicking force generation via myosin motors (gure 2b). The constitutive equation of the
network is shown as follows:
(3.3)
˙+−2
˙=.
Here, is the characteristic time scale of cross-linker unbinding (i.e. elastic-like in short time scales
(<) and viscous over longer periods of time (>)), and is the elastic modulus of the cell.
represents the maximum value of contractility or stall force that could be generated in cells,
determined by two factors. First, it is inuenced by the rate at which myosin motors can generate
stress (1/) and contract the cell with an elastic modulus of . Second, it is aected by the rate of
cross-linker unbinding (1/), which counteracts the increase of stress in the system. Consequently,
is proportional to (/). This model eectively captures the evolution of force generation
in cells leading to the establishment of tension in the steady state. Using a single dashpot (gure
2b(i)), instead of the proposed two (gure 2b(ii)), results in a similar constitutive equation. However,
using two dashpots highlights the loss of force generation in the steady-state condition when the net
displacement of the microplates is 0, indicating internal creep.
This model can predict the critical stiness over which the plateau force () remains constant,
the response of cells to step changes in substrate stiness, and the rate at which force is generated
across various substrate stinesses. Interestingly, the constitutive equation (3.3) can also be wrien in a
similar form as the Hill model of muscle contraction,
(3.4)
+ +=,
where =,= 2+, and =+ −(
˙)/(2) . Here, =
˙ is the speed of shortening,
represents the rate of actin polymerization and =/2 is the internal creep. This equation allows the
examination of non-muscle cell behaviour in two extreme cases: = 0 (stiness of the substrate equal
to 0) and = 0 (stiness of the substrate equal to innity). These extreme scenarios illustrate the role
of the molecular mechanisms that both govern and limit cell responses. Basically, cells initiate force
generation upon aachment to the substrate. If the resistance of the external environment is lower
than the force generated via myosin motors (e.g. when = 0), cells will start to contract the microplate,
which would, in turn, increase its resistance against the cell. This increased external resistance leads to
a reduction in the rate of retrograde ow. Moreover, cross-linker unbinding and actin polymerization
are two internal mechanisms that antagonize the rate of retrograde ow. This explanation can also be
shown according to equation (3.4); when is 0, the maximum shortening length is max =
2−2.
These two internal factors also determine the maximum force generated in the system in the case
of very high stinesses. As demonstrated by max =1−+
2
+ 2, the maximum force in the
7
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
cell is not equal to . In this scenario, actin polymerization requires extra work by myosin motors,
which will be lost as a boundary creep. Furthermore, cross-linker unbinding will also result in force
dissipation, leading to internal creep.
An analogous active Maxwell uid model was employed to understand the mechanical character-
istics underlying the observed cellular response to local RhoA activation [87]. In their experiments,
Oakes et al. used optogenetic probes to recruit a cytosolic photo-recruitable protein RhoA-specic
guanine exchange factor (prGEF) to the plasma membrane and activated RhoA over periods of
15 minutes. During local activation of RhoA, the uorescent intensity of both actin and myosin II
increased exponentially, plateaued and then decreased during the relaxation period (gure 2c(i)). A
similar response has been observed while measuring traction forces and strain energy in cells (gure
2c(iii)). Besides, RhoA activation resulted in a sudden enhancement of traction force generation in the
cell borders, whereas in the activation region traction forces did not change.
In the model used to describe this behaviour, contractile stress is introduced as an internal
boundary condition, that is, 0<, = ± 0,=∓0, to represent RhoA activation in the cell area.
The prole of 0 follows a similar paern as the actin and myosin accumulation in the activation area
(gure 2c(ii)). In addition, a two-dimensional model of stress bres embedded in a passive viscoelastic
environment was used to estimate the direction and magnitude of the actomyosin ow towards the
activation region. Finally, through the application of this model, they showcased the role of Zyxin in
regulating the time scale of the initial elastic behaviour.
Active CEs are employed in chemomechanical models as well. These models integrate the eect of
the interplay between the mechanical characteristics of cells, external and internal mechanical stimuli
and the cascade of biochemical signals to simulate cell behaviour in various scenarios. For example,
a chemomechanical model illustrated the growth dynamics of cell–ECM adhesion structures and
highlighted the regulatory inuence of the stiness of the nucleus and ECM [100]. Another model
demonstrated how the interaction between cells and ECM aects both gene expression and nuclear
architecture [101]. This group of models is reviewed in [102,103].
4. Integrating activity in viscoelastic solid models
The previous section demonstrated how active tension originating from actomyosin dynamics can be
integrated within constitutive equations that relate force and rate of contraction. Étienne et al.’s model
provides, in particular, a detailed description of the transient regimes leading to the establishment
of steady active stress [38]. These descriptions treat active materials as uid without a reference
to an intrinsic shape. It is, however, common for tissues to exhibit solid-like characteristics, with a
well-dened reference shape, and the role of active stresses may then be interpreted as an apparent
tension or a change in reference shape. In this section, we review these dierent approaches, highlight-
ing their similarities and dierences.
4.1. Constant active element
A simple way to introduce active contraction across a material is to include a stress-generating unit of
constant value. Such an approach was used by Wya et al., when they investigated the short-time-scale
response of Madin–Darby canine kidney (MDCK) monolayers to in-plane compressions [18], a process
observed during morphogenetic processes [104,105] and the normal physiological function of many
epithelial tissues [106,107]. The MDCK monolayers were placed between two rods and compressed
at dierent rates. Quickly compressing the monolayer to strains below a threshold level (ε ~ 33%)
resulted in transient folds that disappeared in time scales of the order of seconds, while the folds
created owing to higher strains were permanent. The same buckling threshold of ε ~ 33% was observed
when the monolayers were compressed both rapidly and at a low rate. In addition, using actomyosin
inhibitors, they have demonstrated that actomyosin activity regulates the rate of tissue aening, the
buckling threshold, pretension and the long-time-scale stiness of the monolayers.
A simple active rheological model could reproduce the results of their studies conducted under
dierent loading conditions (gure 3a). The model consists of a constant active element , which
brings the system to a tensile state even at 0 external load, in parallel to a standard linear solid
model. The MDCK monolayer buckles when the stress in the monolayer approaches the compression
range. Therefore, under compressive strains that would normally cause compressive stress, the model
8
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
assumes that stress in the monolayer remains 0. The constitutive equation under tensile and compres-
sive stresses is dened as
(4.1)
= ++1and =under tensile stress,
= 0 and =−
−
1under compressive stress,
where is the pretension in the monolayer, is the device strain, characterizes the long-term
stiness of the tissue, and describe the short-time-scale response, 1 is the strain in the spring
with stiness satisfying
˙1+1
=
˙, and =/ is the characteristic time scale. Based on the model
predictions for the steady state, when the applied strain is larger than the buckling threshold , >,
(a) Constant contractile element
(b)
(c)
(i) (ii)
(i)(ii)
Maxwell model
Considering cellular contractility
(d) Considering local actin concentration at the wound edge
The Munoz model
Figure 3. Active models for solid-like materials. (a). Active rheological model that includes a constant CE, , in parallel to a standard
solid model to account for the prestress in cell monolayers [18]. Temporal evolution of strain (i) and tissue stress (ii) as a function
of device strain presented for epithelial monolayers undergoing compression at a low strain rate (0.5% s−1). (b) The active element
proposed by Muñoz et al., which adapts its resting length in response to deformations [108]. The evolution of stress over time in stress
relaxation tests predicted by the Maxwell model and active models with two denitions of elastic strain is presented in a table. Stress
in the models is dened using the elastic strain, that is, =. Changing the denition of elastic strain can result in an equivalent
evolution of stress in the active element and the Maxwell model for ≈−1. When the strain is very small, the dierence between
the evolution of stresses in all three models will be negligible. However, at larger strains, the stress in the system would be dependent
on the way that the strain is dened. (c) The modied version of the active element proposed by Muñoz et al., which also considers
the eect of cellular contractility [109]. (i) The average curves representing the evolution of stress over time for MDCK monolayers
stretched at 75% s−1 to various amplitudes of strain plotted on a semi-log scale. (ii) Demonstration of the correlation between the
model calculated from the active rheological model and the characteristic time calculated from tting the stress–time curves with
an empirical function, that is, =−/−+, for dierent loading conditions and actomyosin treatments. (d) An example of a
hybrid vertex model employed to study wound healing. The top view of the epithelial tissue with ablated cells is shown along with the
rheological models of nodal segments (cell-centre connections) in black and vertex segments (cell boundaries) in red [110].
9
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
tissue strain will be equal to the device strain, = and the stress in the tissue will follow =+ .
However, when the monolayer is compressed past the model buckling threshold, stress levels fall to 0
and tissue strain plateaus at =−/. These model predictions are consistent with the experimental
results shown in gure 3a(i) and (ii). The model can also predict the response of the monolayer to
a step of compressive strain of dierent magnitudes. Besides, the model provides a simple way to
capture how treatments aecting actomyosin control the amount of active tension revealing that the
buckling threshold observed in the experiments agrees with model predictions −/ in all conditions.
4.2. Active behaviour modelled as change in the resting length of a spring
The previous approach focused on how active stress, combined with external perturbations, would set
the mechanical evolution of a viscoelastic tissue. The Maxwell branch and its dashpot, in particular,
account for the remodelling and plasticity of the material. Another way to represent this is through the
explicit evolution of the rest shape, or stress-free state, of the material. Both remodelling and tensioning
can be accounted for through the evolution of the resting length of cells and tissues over time, as
proposed by Muñoz et al. [108]. We rst describe how a Maxwell-like behaviour can emerge from this
strategy and then how activity can be added to this class of models.
4.2.1. Model proposed by Muñoz et al.
Muñoz et al. proposed a model to account for the inuence of cytoskeleton activity on cell shape by
representing plasticity as a change in the rest length of a spring [108]. A material’s constitutive equation
therefore takes the form of a relationship between the rate of change of the rest length and the stress (or
equivalently some metric of elastic strain) in the material. In this model, the current resting length of
the material (lament, cell or tissue) , that is, the total length of the material when no external load is
applied to it, is proportional to the elastic strain . The rate of changing the resting length under strain
is dened as
(4.2)
˙
=,
where is the remodelling rate of the network dened as the network resistance to adjusting its
conguration to the applied deformation, is the current elastic strain, =−
and is the current total
length of the network. According to Muñoz’s model, the denition of current elastic strain is dierent
from the apparent strain =−0
0 , where 0 is the initial length and the resting length of the network.
For small deformations, Muñoz’s approach is mathematically equivalent to a linear Maxwell model
with a characteristic time of =
[108]. However, at large deformation, the models dier, leading to
rather complex relaxation dynamics for Muñoz’s model (see gure 3b). This dierence results from
the particular denitions of strains and the resulting nonlinearities emerging from them. For instance,
using a logarithmic form for the elastic strain = ln
(i.e. using the true strain denition rather than
the engineering strain), Muñoz’s model would match the Maxwell model up to large deformations,
with a relaxation time scale independent of the strain amplitude, as shown in the table in gure 3b. At
a mathematical level, controlling the rest length of a spring or having a dashpot in series is therefore
largely equivalent.
However, introducing a dynamic rest length enables a slightly dierent interpretation of the
physiological mechanisms [108]. The dashpot element in the Maxwell model is often associated with
remodelling the system but could also account for the resistance of the cytoplasmic uid to the
applied strain rate and dissipate power. On the other hand, for Muñoz’s active element, the inelastic
part of the external power will be used to overcome the resistance of the cytoskeleton laments
to adapt to the new conguration imposed by the external strain. The active model proposed by
Muñoz has been generalized to two-dimensional/three-dimensional continuum models [111] and also
integrated into discrete models such as cell-centred [112], vertex [113] and cell-centred/vertex hybrid
[109,110] approaches. By incorporating a porosity parameter representing the density of polymers
in the cell cytoskeleton, the continuum model proposed by Asadipour et al. can also replicate the
immediate uidization in cells in response to transient strains and the subsequent gradual stiening
10
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
[111]. These adaptations have facilitated the study of epithelial tissue behaviour in both two and three
dimensions. A modelling approach similar to the Muñoz model proposed by Esfahani et al. could also
demonstrate stiening in response to high strain rates applied to epithelial cell pairs [49]. A few of the
modications made to the Muñoz model are presented in the following sections.
4.2.2. Active element considering cellular contractility
Mosaa et al. [109] modied the evolution law of the resting length of the material proposed by Muñoz
et al. [108] by introducing a contractility parameter to account for the inherent contractility of the
cells,
(4.3)
˙
= −.
In this model, when the elastic strain reaches to , the resting length will not change any more,
and as previously stated [108], when is zero, the model behaves similarly to the Maxwell model.
Mosaa et al. implemented the modied active element in a hybrid cell-centred/vertex model where
cells interact through both cell centrs, presented by nodes and cell–cell junctions, presented by the
connection between vertices [109]. This model could successfully simulate tissue extension and wound
healing.
Khalilgharibi et al. have used a similar approach for ing the results of stress relaxation tests
conducted on MDCK monolayers [5]. Their studies have shown that stress in the MDCK monolayer
increases promptly after strain application. Then, the stress will gradually relax along with an increase
in the monolayer length, which is regulated by actomyosin activity. Moreover, they have noticed a
strain-dependent characteristic time for monolayers stretched at 75% −1 strain rate (gure 3c(i)),
which cannot be explained by standard linear viscoelastic models. Therefore, they proposed a model
that consists of an elastic spring in parallel to an active element that sustains a constant pre-strain
and changes its resting length to relax the imposed stress and return its strain to . The changing
of the resting length of the monolayer in response to an applied strain 0 is dened as
(4.4)
˙
= −
= 0−.
Here, is the eective strain =− / with representing the actual length of the
monolayer after applying the deformation and is the rate of changing the resting length. The
characteristic time predicted by this model, =0/1+0, increases with the applied strain,
which is consistent with their experimental observations, as shown in (gure 3c(ii)).
Another example of the active element that accounts for cellular contractility involves integrating
this model into a hybrid two-dimensional cell-centred/vertex model to analyse the wound healing
process [110]. In this model, the vertex segments (cell boundaries) and nodal segments (cell-centre
connections) connect the apical and basal sides. Nodal segments are characterized using an elastic
spring, and the behaviour of vertex segments is described by an active model consisting of two
branches in parallel (gure 3d). The rst branch is an active element that accounts for the changes
in the resting length of the vertex following equation (4.3). The second branch is an elastic spring
with an additional time-varying contractility parameter Υ
^, which accounts for the eect of high actin
concentration at the wound edge (i.e. purse string contractility) and increases the stress in the elastic
spring. The outcomes of their simulations have demonstrated the regulatory mechanism of both purse
string contractility and tissue contractility on wound healing speed.
4.3. Active element considering a time delay in the active rest length changes
One of the potential reasons for the oscillatory response observed in tissues during various processes,
such as morphogenesis, could be the delay between the signal and the response, as stated by Muñoz
et al. [113]. These delays in the responses can be owing to the distance between the sender and
receiver of the biochemical signals or the time necessary for signal processing [113,114]. To study
this phenomenon, they modied the active element that was previously proposed by Muñoz et al. by
11
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
considering the eect of a time delay between the mechanical signals and the active rest length changes
[108],
(4.5)
˙= −− −.
Analysing the stability of the delay dierential equation resulted in the limits of oscillation and
stability as follows:
(4.6)oscil =1
and stab =π
2.
oscil is the time beyond which the rest length of the element oscillates, is the exponential constant,
and for time scales above stab the value of the rest length is unstable, and its oscillation amplitude will
rise over time. These values might trigger oscillations during embryogenesis.
In addition, delays can also be dependent on the apparent size of the element . Muñoz et al.
implemented the eect of the size-dependent delays, = , into a vertex model to analyse the
oscillation in the cellular area in biological tissues [113]. In the vertex model, the rest length of the
nodal elements was maintained constant, and changes in the resting length of the vertex elements
were dened using equation (4.5). For constant delays, oscillations in the cell area were periodic and
synchronous. However, for size-dependent delays, oscillations started to get increasingly out of sync.
It is argued that this model demonstrated the role of delay in the mechanical response in inducing
oscillations even in the absence of external sources.
5. Summary and future perspectives
The active viscoelastic models outlined here are capable of capturing numerous aspects of cell
behaviour at multiple spatial and temporal scales with a small number of model parameters without
considering the details of the structural components and dynamics of cell–cell and cell–ECM adhesion
sites. These active models provided insight into the results of experiments and predicted the system
behaviour in other arbitrary conditions. Additionally, despite the diculty in establishing a clear
connection between biological processes and model parameters, researchers have used drug treatments
or targeted mutations to demonstrate correlations between model parameters like Young’s modulus,
viscosity or active pretension and biological processes such as actomyosin activity, even molecules that
regulate these processes.
Each active viscoelastic model is described by a constitutive equation that represents a particular
cellular behaviour, such as sensing changes in the substrate stiness, and response to strains at
dierent magnitudes and rates in cell doublets and cell monolayers. Therefore, the existence and
use of a generalized model that can be employed to describe and predict the response of cells in
dierent scenarios is still an open question. Integrating and bridging the gap between phenomenologi-
cal and biophysical models is an important step to improve our understanding of these systems. For
example, a molecular model of the actomyosin cortex inspired a phenomenological model for cell-scale
mechanosensing [38], and a phenomenological model that included the role of actin polymerization
in changing the resting length of the material was incorporated in vertex models to study dier-
ent aspects of tissue dynamics [113]. Consequently, a comprehensive phenomenological model that
captures all the signicant facets of rheological data might also enrich the ndings of biophysical
models and allow us to improve the precision of simulations of cell activity.
Numerical models are an excellent research tool to complement, analyse and interpret experimental
data in the eld of cell mechanics. Numerous models with varying degrees of complexity and details
of the structural elements involved in the observed phenomena have been presented over the years.
Power law [15], fractional (reviewed in [17]), viscoelastic and active viscoelastic models are included
in this category, where the eects of subcellular microstructures on cell rheology are represented by
model parameters. For example, virtual cell (VCell) is a powerful model that includes details of the
nucleus, cytoskeleton, cytoplasm and chromatin bres [115]. This level of detail is computationally
expensive and might not always be necessary. In other words, based on the research question, the
phenomenon of interest, length and time scales and characteristics of the relevant microstructures
can be incorporated into biophysical models. For example, at the molecular scale, chemomechanical
[103,116] and molecular clutch models [117–119] are used to study cell–cell and cell–ECM adhesions,
at the cell-scale statistical approaches can be employed to study cell mechanics [120–122], and cellular
Pos (CPM) [123–125], vertex [126,127] and self-propelled Voronoi [128–130] models are introduced to
12
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
study the mechanical behaviour of epithelial monolayers in two dimensions and three dimensions. The
level of detail can be further reduced by describing the outcomes of experiments using phenomenolog-
ical models before examining the underlying mechanisms.
Ethics. This work did not require ethical approval from a human subject or animal welfare commiee.
Data accessibility. This article has no additional data.
Declaration of AI use. We have not used AI-assisted technologies in creating this article.
Authors’ contributions. B.T.S.: writing—original draft, writing—review and editing; C.H.: writing—review and editing;
A.K.: writing—review and editing; R.Y.: writing—review and editing.
All authors gave nal approval for publication and agreed to be held accountable for the work performed
therein.
Conict of interest declaration. We declare we have no competing interests.
Funding. This study was supported by the NSF (1826135, 2143997) and the NIH (R35GM150623, P20GM113126).
Acknowledgements. R.Y. acknowledges fundings from the NSF (1826135, 2143997) and the NIH (R35GM150623,
P20GM113126).
References
1. Fritsch A, Höckel M, Kiessling T, Nnetu KD, Wetzel F, Zink M, Käs JA. 2010 Are biomechanical changes necessary for tumour progression? Nat.
Phys. 6, 730–732. (doi:10.1038/nphys1800)
2. Phipps S, Yang THJ, Habib FK, Reuben RL, McNeill SA. 2005 Measurement of tissue mechanical characteristics to distinguish between benign
and malignant prostatic disease. Urology 66, 447–450. (doi:10.1016/j.urology.2005.03.017)
3. Palacio-Torralba J, Hammer S, Good DW, Alan McNeill S, Stewart GD, Reuben RL, Chen Y. 2015 Quantitative diagnostics of soft tissue through
viscoelastic characterization using time-based instrumented palpation. J. Mech. Behav. Biomed. Mater. 41, 149–160. (doi:10.1016/j.jmbbm.
2014.09.027)
4. Khalilgharibi N, Fouchard J, Recho P, Charras G, Kabla A. 2016 The dynamic mechanical properties of cellularised aggregates. Curr. Opin. Cell
Biol. 42, 113–120. (doi:10.1016/j.ceb.2016.06.003)
5. Khalilgharibi N et al. 2019 Stress relaxation in epithelial monolayers is controlled by the actomyosin cortex. Nat. Phys. 15, 839–847. (doi:10.
1038/s41567-019-0516-6)
6. Forgacs G, Foty RA, Shafrir Y, Steinberg MS. 1998 Viscoelastic properties of living embryonic tissues: a quantitative study. Biophys. J. 74, 2227–
2234. (doi:10.1016/S0006-3495(98)77932-9)
7. Guevorkian K, Colbert MJ, Durth M, Dufour S, Brochard-Wyart F. 2010 Aspiration of biological viscoelastic drops. Phys. Rev. Lett. 104, 218101.
(doi:10.1103/PhysRevLett.104.218101)
8. Charras G, Yap AS. 2018 Tensile forces and mechanotransduction at cell-cell junctions. Curr. Biol. 28, R445–R457. (doi:10.1016/j.cub.2018.02.
003)
9. Prost J, Jülicher F, Joanny JF. 2015 Active gel physics. Nature Phys. 11, 111–117. (doi:10.1038/nphys3224)
10. Aigouy B, Farhadifar R, Staple DB, Sagner A, Röper JC, Jülicher F, Eaton S. 2010 Cell ow reorients the axis of planar polarity in the wing
epithelium of Drosophila. Cell 142, 773–786. (doi:10.1016/j.cell.2010.07.042)
11. Wyatt TPJ, Harris AR, Lam M, Cheng Q, Bellis J, Dimitracopoulos A, Kabla AJ, Charras GT, Baum B. 2015 Emergence of homeostatic epithelial
packing and stress dissipation through divisions oriented along the long cell axis. Proc. Natl Acad. Sci. USA 112, 5726–5731. (doi:10.1073/pnas.
1420585112)
12. Hart KC, Tan J, Siemers KA , Sim JY, Pruitt BL, Nelson WJ, G loerich M. 2017 E-cadherin and LGN align epithelial cell divisions with tissue tension
independently of cell shape. Proc. Natl Acad. Sci. 114, E5845–E5853. (doi:10.1073/pnas.1701703114)
13. Trepat X, Deng L, An SS, Navajas D, Tschumperlin DJ, Gerthoer WT, Butler JP, Fredberg JJ. 2007 Universal physical responses to stretch in the
living cell. Nature 447, 592–595. (doi:10.1038/nature05824)
14. Krishnan R etal. 2009 Reinforcement versus uidization in cytoskeletal mechanoresponsiveness. PLoS one 4, e5486. (doi:10.1371/journal.pone.
0005486)
15. Kollmannsberger P, Fabry B. 2011 Linear and nonlinear rheology of living cells. Annu. Rev. Mater. Res. 41, 75–97. (doi:10.1146/annurev-
matsci-062910-100351)
16. Rosowski KA, Boltyanskiy R, Xiang Y, Van den Dries K, Schwartz MA, Dufresne ER. 2018 Vinculin and the mechanical response of adherent
broblasts to matrix deformation. Sci. Rep. 8, 17967. (doi:10.1038/s41598-018-36272-9)
17. Bonfanti A, Kaplan JL, Charras G, Kabla A. 2020 Fractional viscoelastic models for power-law materials. Soft Matter 16, 6002–6020. (doi:10.
1039/d0sm00354a)
18. Wyatt TPJ, Fouchard J, Lisica A, Khalilgharibi N, Baum B, Recho P, Kabla AJ, Charras GT. 2020 Actomyosin controls planarity and folding of
epithelia in response to compression. Nat. Mater. 19, 109–117. (doi:10.1038/s41563-019-0461-x)
19. Darling EM, Di Carlo D. 2015 High-throughput assessment of cellular mechanical properties. Annu. Rev. Biomed. Eng. 17, 35–62. (doi:10.1146/
annurev-bioeng-071114-040545)
13
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
20. Quan FS, Kim KS. 2016 Medical applications of the intrinsic mechanical properties of single cells. Acta Biochim. Biophys. Sin. 48, 865–871. (doi:
10.1093/abbs/gmw081)
21. Cross SE, Jin YS, Rao J , Gimzewski JK. 2007 Nanomechanical analysis of cells from cancer patients. Nat. Nanotechnol. 2, 780–783. (doi:10.1038/
nnano.2007.388)
22. Wong VW, Akaishi S, Longaker MT, Gurtner GC. 2011 Pushing back: wound mechanotransduction in repair and regeneration. J. Invest. Dermatol.
131, 2186–2196. (doi:10.1038/jid.2011.212)
23. Wozniak MA, Chen CS. 2009 Mechanotransduction in development: a growing role for contractility. Nat. Rev. Mol. Cell Biol. 10, 34–43. (doi:10.
1038/nrm2592)
24. Balasubramaniam L, Mège RM, Ladoux B. 2022 Active nematics across scales from cytoskeleton organization to tissue morphogenesis. Curr.
Opin. Genet. Dev. 73, 101897. (doi:10.1016/j.gde.2021.101897)
25. Doostmohammadi A, Ignés-Mullol J, Yeomans JM, Sagués F. 2018 Active nematics. Nat. Commun. 9, 3246. (doi:10.1038/s41467-018-05666-8)
26. Needleman D, Dogic Z . 2017 Active matter at the interface between materials science and cell biology. Nat. Rev. Mater. 2, 1–14. (doi:10.1038/
natrevmats.2017.48)
27. Kumar KV. 2021 The actomyosin cortex of cells: a thin lm of active matter. J. Indian Inst. Sci. 101, 97–112. (doi:10.1007/s41745-020-00220-2)
28. Brown AL, Farhat W, Merguerian PA, Wilson GJ, Khour y AE, Woodhouse KA. 2002 22 week assessment of bladder acellular matrix as a bladder
augmentation material in a porcine model. Biomaterials 23, 2179–2190. (doi:10.1016/s0142-9612(01)00350-7)
29. Hill AV. 1938 The heat of shortening and the dynamic constants of muscle. Proc. R. Soc. Lond. B 126, 136–195. (doi:10.1098/rspb.1938.0050)
30. Harris AR, Bellis J, Khalilgharibi N, Wyatt T, Baum B, Kabla AJ, Charras GT. 2013 Generating suspended cell monolayers for mechanobiological
studies. Nat. Protoc. 8, 2516–2530. (doi:10.1038/nprot.2013.151)
31. Crichton ML, Donose BC, Chen X, Raphael AP, Huang H, Kendall MAF. 2011 The viscoelastic, hyperelastic and scale dependent behaviour of
freshly excised individual skin layers. Biomaterials 32, 4670–4681. (doi:10.1016/j.biomaterials.2011.03.012)
32. Uriarte JJ, Meirelles T, Gorbenko Del Blanco D, Nonaka PN, Campillo N, Sarri E, Navajas D, Egea G, Farré R. 2016 Early impairment of lung
mechanics in a murine model of Marfan syndrome. PLoS one 11, e0152124. (doi:10.1371/journal.pone.0152124)
33. Okajima T. 2012 Atomic force microscopy for the examination of single cell rheology. Curr. Pharm. Biotechnol. 13, 2623–2631. (doi:10.2174/
138920101314151120122846)
34. Weafer PP, Reynolds NH, Jarvis SP, McG arry JP. 2015 Single cell active force generation under dynamic loading – Part I: AFM experiments. Acta
Biomater. 27, 236–250. (doi:10.1016/j.actbio.2015.09.006)
35. Fischer-Friedrich E, Toyoda Y, Cattin CJ, Müller DJ, Hyman AA, Jülicher F. 2016 Rheology of the active cell cortex in mitosis. Biophys. J. 111,
589–600. (doi:10.1016/j.bpj.2016.06.008)
36. Helenius J, Heisenberg CP, Gaub HE, Muller DJ. 2008 Single-cell force spectroscopy. J. Cell Sci. 121, 1785–1791. (doi:10.1242/jcs.030999)
37. Mitrossilis D, Fouchard J, Guiroy A, Desprat N, Rodriguez N, Fabry B, Asnacios A. 2009 Single-cell response to stiness exhibits muscle-like
behavior. Proc. Natl Acad. Sci. USA 106, 18 243–18 248. (doi:10.1073/pnas.0903994106)
38. Étienne J, Fouchard J, Mitrossilis D, Bu N, Durand-Smet P , Asnacios A. 2015 Cells as liquid motors: mechanosensitivity emerges from collective
dynamics of actomyosin cortex. Proc. Natl Acad. Sci. USA 112, 2740–2745. (doi:10.1073/pnas.1417113112)
39. Bonakdar N, Gerum R, Kuhn M, Spörrer M, Lippert A, Schneider W, Aifantis KE, Fabry B. 2016 Mechanical plasticity of cells. Nat. Mater. 15,
1090–1094. (doi:10.1038/nmat4689)
40. Kilinc D, Lee GU. 2014 Advances in magnetic tweezers for single molecule and cell biophysics. Integr. Biol. 6, 27–34. (doi:10.1039/c3ib40185e)
41. Ayala YA etal. 2016 Rheological properties of cells measured by optical tweezers. BMC Biophys. 9, 5. (doi:10.1186/s13628-016-0031-4)
42. Arbore C, Perego L, Sergides M, Capitanio M. 2019 Probing force in living cells with optical tweezers: from single-molecule mechanics to cell
mechanotransduction. Biophys. Rev. 11, 765–782. (doi:10.1007/s12551-019-00599-y)
43. Nussenzveig HM. 2018 Cell membrane biophysics with optical tweezers. Eur. Biophys. J. 47, 499–514. (doi:10.1007/s00249-017-1268-9)
44. Hochmuth RM. 2000 Micropipette aspiration of living cells. J. Biomech. 33, 15–22. (doi:10.1016/s0021-9290(99)00175-x)
45. González-Bermúdez B, Guinea GV, Plaza GR. 2019 Advances in micropipette aspiration: applications in cell biomechanics, models, and
extended studies. Biophys. J. 116, 587–594. (doi:10.1016/j.bpj.2019.01.004)
46. Wang H, Zhou F, Guo Y, Ju LA. 2022 Micropipette-based biomechanical nanotools on living cells. Eur. Biophys. J. 51, 119–133. (doi:10.1007/
s00249-021-01587-5)
47. Vedula SRK, Lim TS, Kausalya PJ, Lane EB, Rajagopal G, Hunziker W, Lim CT. 2009 Quantifying forces mediated by integral tight junction
proteins in cell–cell adhesion. Exp. Mech. 49, 3–9. (doi:10.1007/s11340-007-9113-1)
48. Tashiro H, Uchida M, Sato-Maeda M . 1993 Three-dimensional cell manipulator by means of optical trapping for the specication of cell-to-cell
adhesion. Opt. Eng. 32, 2812. (doi:10.1117/12.147714)
49. Esfahani AM etal. 2021 Characterization of the strain-rate-dependent mechanical response of single cell-cell junctions. Proc. Natl Acad. Sci. USA
118, e2019347118. (doi:10.1073/pnas.2019347118)
50. Yang R, Broussard JA, Green KJ, Espinosa HD. 2018 Techniques to stimulate and interrogate cell-cell adhesion mechanics. Extreme Mech. Lett.
20, 125–139. (doi:10.1016/j.eml.2017.12.002)
51. Monemian Esfahani A, Rosenbohm J, Reddy K, Jin X, Bouzid T, Riehl B, Kim E, Lim JY, Yang R. 2019 Tissue regeneration from mechanical
stretching of cell-cell adhesion. Tissue Eng. Part C. Methods 25, 631–640. (doi:10.1089/ten.TEC.2019.0098)
52. Dahl KN, Engler AJ , Pajerowski JD, Discher DE. 2005 Power-law rheology of isolated nuclei with deformation mapping of nuclear substructures.
Biophys. J. 89, 2855–2864. (doi:10.1529/biophysj.105.062554)
14
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
53. Davidson PM, Fedorchak GR, Mondésert-Deveraux S, Bell ES, Isermann P, Aubry D, Allena R, Lammerding J. 2019 High-throughput microuidic
micropipette aspiration device to probe time-scale dependent nuclear mechanics in intact cells. Lab Chip 19, 3652–3663. (doi:10.1039/
c9lc00444k)
54. Hobson CM, Falvo MR, Superne R. 2021 A survey of physical methods for studying nuclear mechanics and mechanobiology. APL Bioeng. 5,
041508. (doi:10.1063/5.0068126)
55. Tlili S, Gay C, Graner F, Marcq P, Molino F, Saramito P. 2015 Colloquium: mechanical formalisms for tissue dynamics. Eur. Phys. J. E. 38, 1–31.
(doi:10.1140/epje/i2015-15033-4)
56. Bernheim-Groswasser A, Gov NS, Safran SA, Tzlil S. 2018 Living matter: mesoscopic active materials. Adv. Mater. 30, e1707028. (doi:10.1002/
adma.201707028)
57. Banerjee S, Gardel ML, Schwarz US. 2020 The actin cytoskeleton as an active adaptive material. Annu. Rev. Condens. Matter Phys. 11, 421–439.
(doi:10.1146/annurev-conmatphys-031218-013231)
58. Fletcher DA, Mullins RD. 2010 Cell mechanics and the cytoskeleton. Nature 463, 485–492. (doi:10.1038/nature08908)
59. Xi W, Saw TB, Delacour D, Lim CT, Ladoux B. 2019 Material approaches to active tissue mechanics. Nat. Rev. Mater. 4, 23–44. (doi:10.1038/
s41578-018-0066-z)
60. Carlier MF, Shekhar S. 2017 Global treadmilling coordinates actin turnover and controls the size of actin networks. Nat. Rev. Mol. Cell Biol. 18,
389–401. (doi:10.1038/nrm.2016.172)
61. Pollard TD, Berro J. 2009 Mathematical models and simulations of cellular processes based on actin laments. J. Biol. Chem. 284, 5433–5437.
(doi:10.1074/jbc.R800043200)
62. Pollard TD. 2016 Theory from the Oster laboratory leaps ahead of experiment in understanding actin-based cellular motility. Biophys. J. 111,
1589–1592. (doi:10.1016/j.bpj.2016.08.044)
63. Wegner A. 1976 Head to tail polymerization of actin. J. Mol. Biol. 108, 139–150. (doi:10.1016/s0022-2836(76)80100-3)
64. Banerjee S, Gardel ML, Schwarz US. 2020 The actin cytoskeleton as an active adaptive material. Annu. Rev. Condens. Matter Phys. 11, 421–439.
(doi:10.1146/annurev-conmatphys-031218-013231)
65. Neuhaus JM, Wanger M, Keiser T, Wegner A. 1983 Treadmilling of actin. J. Muscle Res. Cell Motil. 4, 507–527. (doi:10.1007/BF00712112)
66. Chaudhuri O, Cooper-White J, Janmey PA, Mooney DJ, Shenoy VB. 2020 Eects of extracellular matrix viscoelasticity on cellular behaviour.
Nature 584, 535–546. (doi:10.1038/s41586-020-2612-2)
67. Alert R, Trepat X. 2020 Physical models of collective cell migration. Annu. Rev. Condens. Matter Phys 11, 77–101. (doi:10.1146/annurev-
conmatphys-031218-013516)
68. Robert-Paganin J, Pylypenko O, Kikuti C, Sweeney HL, Houdusse A. 2020 Force generation by myosin motors: a structural perspective. Chem.
Rev. 120, 5–35. (doi:10.1021/acs.chemrev.9b00264)
69. Houdusse A, Sweeney HL. 2016 How myosin generates force on actin laments. Trends Biochem. Sci. 41, 989–997. (doi:10.1016/j.tibs.2016.09.
006)
70. Murrell M, Oakes PW, Lenz M, Gardel ML. 2015 Forcing cells into shape: the mechanics of actomyosin contractility. Nat. Rev. Mol. Cell Biol. 16,
486–498. (doi:10.1038/nrm4012)
71. Livne A, Geiger B. 2016 The inner workings of stress bers − from contractile machinery to focal adhesions and back. J. Cell Sci. 129, 1293–
1304. (doi:10.1242/jcs.180927)
72. Yap AS, Duszyc K, Viasno V. 2018 Mechanosensing and mechanotransduction at cell-cell junctions. Cold Spring Harb. Perspect. Biol. 10,
a028761. (doi:10.1101/cshperspect.a028761)
73. Shukla VC, Higuita-Castro N, Nana-Sinkam P, Ghadiali SN. 2016 Substrate stiness modulates lung cancer cell migration but not epithelial to
mesenchymal transition. J. Biomed. Mater. Res. A. 104, 1182–1193. (doi:10.1002/jbm.a.35655)
74. Hadden WJ et al. 2017 Stem cell migration and mechanotransduction on linear stiness gradient hydrogels. Proc. Natl Acad. Sci. USA 114,
5647–5652. (doi:10.1073/pnas.1618239114)
75. Alert R, Trepat X. 2019 Physical models of collective cell migration. arXiv. See https://arxiv.org/abs/1905.07675
76. Sun M et al. 2018 Eects of matrix stiness on the morphology, adhesion, proliferation and osteogenic dierentiation of mesenchymal stem
cells. Int. J. Med. Sci. 15, 257–268. (doi:10.7150/ijms.21620)
77. Liu N etal. 2018 Eect of substrate stiness on proliferation and dierentiation of periodontal ligament stem cells. Cell Prolif. 51, e12478. (doi:
10.1111/cpr.12478)
78. Engler AJ, Sen S, Sweeney HL, Discher DE. 2006 Matrix elasticity directs stem cell lineage specication. Cell 126, 677–689. (doi:10.1016/j.cell.
2006.06.044)
79. Mao AS, Shin JW, Mooney DJ. 2016 Eects of substrate stiness and cell-cell contact on mesenchymal stem cell dierentiation. Biomaterials
98, 184–191. (doi:10.1016/j.biomaterials.2016.05.004)
80. Li B, Wang JHC. 2011 Fibroblasts and myobroblasts in wound healing: force generation and measurement. J. Tissue Viability 20, 108–120.
(doi:10.1016/j.jtv.2009.11.004)
81. Bosveld F et al. 2012 Mechanical control of morphogenesis by Fat/Dachsous/Four-jointed planar cell polarity pathway. Science 336, 724–727.
(doi:10.1126/science.1221071)
82. Yamada KM et al. 2019 Extracellular matrix dynamics in cell migration, invasion and tissue morphogenesis. Int. J. Exp. Pathol. 100, 144–152.
(doi:10.1111/iep.12329)
15
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
83. Chowdhury F, Huang B, Wang N. 2021 Cytoskeletal prestress: the cellular hallmark in mechanobiology and mechanomedicine. Cytoskeleton
(Hoboken) 78, 249–276. (doi:10.1002/cm.21658)
84. Rodriguez ML, McGarr y PJ , Sniadecki NJ. 2013 Review on cell mechanics: experimental and modeling approaches. Appl. Mech. Rev. 65. (doi:10.
1115/1.4025355)
85. Doss BL, Pan M, G upta M, Grenci G, Mège RM, Lim CT, Sheetz MP , Voituriez R, Ladoux B. 2020 Cell response to substrate rigidity is regulated by
active and passive cytoskeletal stress. Proc. Natl Acad. Sci. USA 117, 12 817–12 825. (doi:10.1073/pnas.1917555117)
86. Herzog W. 2019 The problem with skeletal muscle series elasticity. BMC Biomed. Eng. 1, 28. (doi:10.1186/s42490-019-0031-y)
87. Oakes PW, Wagner E, Brand CA, Probst D, Linke M, Schwarz US, Glotzer M, Gardel ML. 2017 Optogenetic control of RhoA reveals zyxin-mediated
elasticity of stress bres. Nat. Commun. 8, 15817. (doi:10.1038/ncomms15817)
88. McMahon TA. 1984 Muscles, reexes, and locomotion. Princeton University Press. (doi:10.1515/9780691221540)
89. Arslan YZ, Karabulut D, Ortes F, Popovic MB. 2019 Exoskeletons, exomusculatures, exosuits: dynamic modeling and simulation. In
Biomechatronics, (ed. MB Popovic), pp. 305–331. London, UK/San Diego, CA: Elsevier.
90. Regazzoni F, Dedè L, Quarteroni A. 2021 Active force generation in cardiac muscle cells: mathematical modeling and numerical simulation of
the actin-myosin interaction. Vietnam J. Math. 49, 87–118. (doi:10.1007/s10013-020-00433-z)
91. Wakeling JM, Febrer-Nafría M, De Groote F. 2023 A review of the eorts to develop muscle and musculoskeletal models for biomechanics in the
last 50 years. J. Biomech. 155, 111657. (doi:10.1016/j.jbiomech.2023.111657)
92. Discher DE, Janmey P, Wang YL. 2005 Tissue cells feel and respond to the stiness of their substrate. Science 310, 1139–1143. (doi:10.1126/
science.1116995)
93. Janmey PA, Fletcher DA, Reinhart-King CA. 2020 Stiness sensing by cells. Physiol. Rev. 100, 695–724. (doi:10.1152/physrev.00013.2019)
94. Chakraborty M et al. 2021 Mechanical stiness controls dendritic cell metabolism and function. Cell Rep. 34, 108609. (doi:10.1016/j.celrep.
2020.108609)
95. Huxley AF. 1957 Muscle structure and theories of contraction. Prog. Biophys. Biophys. Chem 7, 255–318. (doi:10.1016/s0096-4174(18)30128-8)
96. Huxley AF, Simmons RM. 1971 Proposed mechanism of force generation in striated muscle. Nature 233, 533–538. (doi:10.1038/233533a0)
97. Powers JD, Malingen SA, Regnier M , Daniel TL. 2021 The sliding lament theory since Andrew Huxley: multiscale and multidisciplinary muscle
research. Annu. Rev. Biophys. 50, 373–400. (doi:10.1146/annurev-biophys-110320-062613)
98. Moreo P, García-Aznar JM, Doblaré M. 2008 Modeling mechanosensing and its eect on the migration and proliferation of adherent cells. Acta
Biomater. 4, 613–621. (doi:10.1016/j.actbio.2007.10.014)
99. Borau C, Kamm RD, García-Aznar JM. 2014 A time-dependent phenomenological model for cell mechano-sensing. Biomech. Model.
Mechanobiol. 13, 451–462. (doi:10.1007/s10237-013-0508-x)
100. Cao X, Lin Y, Driscoll TP, Franco-Barraza J, Cukierman E, Mauck RL, Shenoy VB. 2015 A chemomechanical model of matrix and nuclear rigidity
regulation of focal adhesion size. Biophys. J. 109, 1807–1817. (doi:10.1016/j.bpj.2015.08.048)
101. Alisafaei F, Jokhun DS, Shivashankar GV, Shenoy VB. 2019 Regulation of nuclear architecture, mechanics, and nucleocytoplasmic shuttling of
epigenetic factors by cell geometric constraints. Proc. Natl Acad. Sci. USA 116, 13 200–13 209. (doi:10.1073/pnas.1902035116)
102. Sun SY Zhang H Fang W Chen X Li B Feng XQ. 2022 Bio-chemo-mechanical coupling models of soft biological materials: a review. Adv. Appl.
Mech 55, 309–392. (doi:10.1016/bs.aams.2022.05.004)
103. Senthilkumar I, Howley E, McEvoy E. 2022 Thermodynamically-motivated chemo-mechanical models and multicellular simulation to provide
new insight into active cell and tumour remodelling. Exp. Cell Res. 419, 113317. (doi:10.1016/j.yexcr.2022.113317)
104. Sidhaye J, Norden C. 2017 Concerted action of neuroepithelial basal shrinkage and active epithelial migration ensures ecient optic cup
morphogenesis. Elife 6, e22689. (doi:10.7554/eLife.22689)
105. Tallinen T, Chung JY, Rousseau F , Girard N, Lefèvre J, Mahadevan L. 2016 On the growth and form of cortical convolutions. Nat. Phys. 12, 588–
593. (doi:10.1038/nphys3632)
106. Grainge CL, Lau LCK, Ward JA, Dulay V, Lahi G, Wilson S, Holgate S, Davies DE, Howarth PH. 2011 Eect of bronchoconstriction on airway
remodeling in asthma. N. Engl. J. Med. 364, 2006–2015. (doi:10.1056/NEJMoa1014350)
107. Park JA etal. 2015 Unjamming and cell shape in the asthmatic airway epithelium. Nat. Mater. 14, 1040–1048. (doi:10.1038/nmat4357)
108. Muñoz JJ, Albo S. 2013 Physiology-based model of cell viscoelasticity. Phys. Rev. E. Stat. Nonlin. Soft Matter Phys. 88, 012708. (doi:10.1103/
PhysRevE.88.012708)
109. Mosaa P, Rodríguez-Ferran A, Muñoz JJ. 2018 Hybrid cell-centred/vertex model for multicellular systems with equilibrium-preserving
remodelling. Int. J. Numer. Method. Biomed. Eng. 34, e2928. (doi:10.1002/cnm.2928)
110. Ioannou F, Dawi MA, Tetley RJ, Mao Y, Muñoz JJ. 2020 Development of a new 3D hybrid model for epithelia morphogenesis. Front. Bioeng.
Biotechnol. 8, 405. (doi:10.3389/fbioe.2020.00405)
111. Asadipour N, Trepat X, Muñoz JJ. 2016 Porous-based rheological model for tissue uidisation. J. Mech. Phys. Solids 96, 535–549. (doi:10.1016/j.
jmps.2016.07.002)
112. Mosaa P, Asadipour N, Millán D, Rodríguez-Ferran A, J Muñoz J. 2015 Cell-centred model for the simulation of curved cellular monolayers.
Comp. Part. Mech. 2, 359–370. (doi:10.1007/s40571-015-0043-x)
113. Muñoz JJ, Dingle M, Wenzel M. 2018 Mechanical oscillations in biological tissues as a result of delayed rest-length changes. Phys. Rev. E 98,
052409. (doi:10.1103/PhysRevE.98.052409)
114. Solon J, Kaya-Copur A, Colombelli J, Brunner D. 2009 Pulsed forces timed by a ratchet-like mechanism drive directed tissue movement during
dorsal closure. Cell 137, 1331–1342. (doi:10.1016/j.cell.2009.03.050)
16
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074
115. Heydari T, Heidari M, Mashinchian O, Wojcik M, Xu K, Dalby MJ, Mahmoudi M, Ejtehadi MR. 2017 Development of a virtual cell model to predict
cell response to substrate topography. ACS Nano 11, 9084–9092. (doi:10.1021/acsnano.7b03732)
116. McEvoy E etal. 2022 Feedback between mechanosensitive signaling and active forces governs endothelial junction integrity. Nat. Commun. 13,
7089. (doi:10.1038/s41467-022-34701-y)
117. Elosegui-Artola A, Oria R, Chen Y, Kosmalska A, Pérez-González C, Castro N, Zhu C, Trepat X, Roca-Cusachs P. 2016 Mechanical regulation of a
molecular clutch denes force transmission and transduction in response to matrix rigidity. Nat. Cell Biol. 18, 540–548. (doi:10.1038/ncb3336)
118. Bennett M, Cantini M, Reboud J, Cooper JM, Roca-Cusachs P, Salmeron-Sanchez M. 2018 Molecular clutch drives cell response to surface
viscosity. Proc. Natl Acad. Sci. USA 115, 1192–1197. (doi:10.1073/pnas.1710653115)
119. Andreu I et al. 2021 The force loading rate drives cell mechanosensing through both reinforcement and cytoskeletal softening. Nat. Commun.
12, 4229. (doi:10.1038/s41467-021-24383-3)
120. McEvoy E, Shishvan SS, Deshpande VS, McGarry JP. 2018 Thermodynamic modeling of the statistics of cell spreading on ligand-coated elastic
substrates. Biophys. J. 115, 2451–2460. (doi:10.1016/j.bpj.2018.11.007)
121. Shishvan SS, Vigliotti A, Deshpande VS. 2018 The homeostatic ensemble for cells. Biomech. Model. Mechanobiol. 17, 1631–1662. (doi:10.1007/
s10237-018-1048-1)
122. McEvoy E, Deshpande VS, McGarry P. 2019 Transient active force generation and stress bre remodelling in cells under cyclic loading. Biomech.
Model. Mechanobiol. 18, 921–937. (doi:10.1007/s10237-019-01121-9)
123. Wortel IMN, Niculescu I, Kolijn PM, Gov NS, de Boer RJ, Textor J. 2021 Local actin dynamics couple speed and persistence in a cellular Potts
model of cell migration. Biophys. J. 120, 2609–2622. (doi:10.1016/j.bpj.2021.04.036)
124. Hirway SU, Lemmon CA, Weinberg SH. 2021 Multicellular mechanochemical hybrid cellular Potts model of tissue formation during epithelial‐
mesenchymal transition. Comp. Sys. Onco. 1, e1031. (doi:10.1002/cso2.1031)
125. Odagiri K, Fujisaki H, Takada H, Ogawa R. 2022 Numerical simulation using cellular Potts model for wound closure with ATP release and the
Mechanobioligical eects. arXiv See https://arxiv.org/pdf/2209.01354.pdf.
126. Fletcher AG, Ostereld M, Baker RE, Shvartsman SY. 2014 Vertex models of epithelial morphogenesis. Biophys. J. 106, 2291–2304. (doi:10.
1016/j.bpj.2013.11.4498)
127. Alt S, Ganguly P, Salbreux G. 2017 Vertex models: from cell mechanics to tissue morphogenesis. Phil. Trans. R. Soc. Lond. B. 372, 20150520. (doi:
10.1098/rstb.2015.0520)
128. Li B, Sun SX. 2014 Coherent motions in conuent cell monolayer sheets. Biophys. J. 107, 1532–1541. (doi:10.1016/j.bpj.2014.08.006)
129. Bi D, Yang X, Marchetti MC, Manning ML . 2016 Motility-driven glass and jamming transitions in biological tissues. Phys. Rev. X 6, 021011. (doi:
10.1103/PhysRevX.6.021011)
130. Giavazzi F, Paoluzzi M, Macchi M, Bi D, Scita G, Manning ML, Cerbino R, Marchetti MC. 2018 Flocking transitions in conuent tissues. Soft Matter
14, 3471–3477. (doi:10.1039/c8sm00126j)
17
royalsocietypublishing.org/journal/rsos R. Soc. Open Sci. 11: 231074