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Variation and Characterization of Bacterial Communities Contaminating Two Saunas Operated at 64℃ and 76

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This study was performed to analyze 6 day-term variations in bacterial communities contaminating the floor of two dry saunas that were operated at 64℃ (low temp) and 76℃ (high temp). Bacteria were sampled daily from the saunas for 6 days from Monday to Saturday. Genomic DNA was isolated directly from bacteria-collected cotton swabs. The diversity of the bacterial communities collected from the saunas was analyzed using thermal gradient gel electrophoresis (TGGE). The total numbers of DNA bands separated by TGGE for bacteria collected from the low temp and high temp sauna were 20 and 18, respectively, during the 6 days. Seven of 20 bacteria in the low temp sauna and eight of 18 bacteria in the high temp sauna were detected more than three times over the 6 experimental days. Twelve of the 26 bacterial genera contaminating the saunas were cross detected. Bacteria belonging to the genera Moraxella and Acinetobacter were selectively detected in the low temp sauna, whereas those belonging to Aquaspirillum, Chromobacterium, Aquabacterium, Gulbenkiania, Pelomonas, and Aquitalea were selectively detected in the high temp sauna. Three species of bacteria contaminating both the low and high temp saunas were thermophile or thermoduric. The results indicate that the sauna-contaminating bacteria may have been transferred from outside the saunas by user traffic but did not inhabit the saunas.
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Journal of Bacteriology and Virology 2013. Vol. 43, No. 3 p.195
203
http://dx.doi.org/10.4167/jbv.2013.43.3.195
Variation and Characterization of Bacterial Communities
Contaminating Two Saunas Operated at 64 and 76
Bong Su Kim, Jae Ran Seo and Doo Hyun Park
*
Department of Chemical and Biological Engineering, Seokyeong University, Seoul, Korea
This study was performed to analyze 6 day-term variations in bacterial communities contaminating the floor of two
dry saunas that were operated at 64 (low temp) and 76 (high temp). Bacteria were sampled daily from the saunas
for 6 days from Monday to Saturday. Genomic DNA was isolated directly from bacteria-collected cotton swabs. The
diversity of the bacterial communities collected from the saunas was analyzed using thermal gradient gel electrophoresis
(TGGE). The total numbers of DNA bands separated by TGGE for bacteria collected from the low temp and high temp
sauna were 20 and 18, respectively, during the 6 days. Seven of 20 bacteria in the low temp sauna and eight of 18 bacteria
in the high temp sauna were detected more than three times over the 6 experimental days. Twelve of the 26 bacterial
genera contaminating the saunas were cross detected. Bacteria belonging to the genera Moraxella and Acinetobacter were
selectively detected in the low temp sauna, whereas those belonging to Aquaspirillum, Chromobacterium, Aquabacterium,
Gulbenkiania, Pelomonas, and Aquitalea were selectively detected in the high temp sauna. Three species of bacteria
contaminating both the low and high temp saunas were thermophile or thermoduric. The results indicate that the sauna-
contaminating bacteria may have been transferred from outside the saunas by user traffic but did not inhabit the saunas.
Key Words: Sauna-contaminant, Thermophile, Thermoduric, TGGE, Spore-forming bacteria
INTRODUCTION
We have previously characterized a specific bacterial
community obtained by single-time and single point
sampling from a sauna operated at 75~80 using thermal
gradient gel electrophoresis (TGGE) (1). In that study,
selectively isolated thermophilic bacteria grew maximally
at 40 in both defined and complex medium but limited
growth occurred at 50 in a defined medium and at 60
in a complex medium. Bacteria isolated from a 75~80
sauna were thermoduric but not thermophilic. However,
the diversity and characteristics of the bacterial community
were analyzed by single-time and single-point sampling
may vary opportunistically according to the user number,
residence time, and physiological condition.
Thermophilic bacteria are different from thermoduric
bacteria by their ability to regenerate and grow under
thermal conditions of 45~122 (2, 3). The survivability
of thermoduric bacteria in a hot and dry sauna and under
heat of pasteurization depends upon their ability to sporulate
(4, 5). Spore-forming bacteria may be thermoduric or
thermophilic. But, thermophilic bacteria can't grow at
mammalian temperatures (30~40); however, thermoduric
bacteria can grow at mammalian temperatures and generate
spores at higher than mammalian temperatures (6~9). Dry
195
Original Article
Received: June 26, 2013/ Revised: August 21, 2013/ Accepted: August 29, 2013
*
Corresponding author: Doo Hyun Park. Department of Chemical and Biological Engineering, Seokyeong University, 16-1 Jungneung-dong, Sungbuk-gu,
Seoul 136-704, Korea.
Phone: +82-2-940-7190, Fax: +82-2-919-0345, e-mail: baakdoo@skuniv.ac.kr
CC
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/license/by-nc/3.0/).
196 BS Kim, et al.
saunas are generally operated at temperatures > 60, which
may not be a proper temperature for thermophilic bacteria,
but an environmental signal for thermoduric bacteria to
generate spores. Dry saunas may not be nutritionally proper
for bacterial growth but may be opportunistically contami-
nated with various bacteria and organic compounds by user
traffic (10). User traffic may be the major cause of sauna
contamination by bacteria, as human traffic supplies nutrients
needed by specific thermoduric and thermophilic bacteria
to opportunistically survive.
Theoretically, psychrophiles and mesophiles can't grow
and inhabit the environmental conditions inside a sauna;
however, spore-forming bacteria may survive for a particular
period, considering that endospores are often highly resistant
to chemical- and heat-treatment (11). Species belonging to
the endospore-forming bacteria are found in both natural
and artificial environments (12, 13). Endospore-forming
bacteria are widely distributed in the natural environment
such as soil and water. Most bacteria dwelling around
humans may be transferred into a sauna through direct
contact with the human body (14, 15).
In this study, the bacteria collected from two saunas on
multiple occasions was analyzed using TGGE to compare
the daily variations in the bacterial community during 6 days
from Monday to Saturday and a conditional variation in the
bacterial community based on the temperature difference
between the two saunas.
MATERIALS AND MOTHODS
Bacterial sampling
A digital thermometer on the outside wall of the two
saunas indicated that the internal temperatures were 64
and 76 in the low temp and high temp saunas, respec-
tively. Bacteria were sampled from the floor of the dry
sauna using sterilized cotton swabs. Samples were collected
around 9 o'clock in the morning on December 24~29,
2012. An aluminum foil-wrapped cotton swab was opened
immediately before sampling, and the floor was then deeply
and broadly wiped with three cotton swabs per sample area.
The sampling points were located at 30 cm from each wall
in the central part because user traffic was mainly busy
between the central part and each wall but not around the
corners. The diameter of the sampling area was about 30
cm (1). In total, 15 swabs were taken and used for DNA
extraction. The part of the cotton swab used for bacterial
sampling was placed in a sterilized conical tube immediately
after sampling, and the other end was removed and used in
a previous study (1).
16S-rDNA amplification
Total DNA was directly extracted from the bacterial cells
collected from the cotton swabs using a Genomic DNA
extraction kit (Accuprep; Bioneer, Daejeon, Korea) according
to the manufacturer's protocol. 16S ribosomal DNA was
amplified via direct polymerase chain reaction (PCR) using
the chromosomal DNA template and 16S-rDNA specific
universal primers as follows: forward 5'-GAGTTGGATC-
CTGGCTCAG-3' and reverse 5'-AAGGAGGGGATCC-
AGCC-3'. The PCR reaction mixture (50 μl) consisted of
2.5 U Tag polymerase, 250 μM of each dNTP, 10 mM
Tris-HCl (pH 9.0), 40 mM KCl, 100 ng template, 50 pM
primer, and 1.5 mM MgCl
2
. Amplification was conducted
for 30 cycles of 1 min at 95, 1 min of annealing at 55,
and 2 min of extension at 72 using a PCR machine (T
Gradient model, Biometra, Göttingen, Germany).
TGGE
The 16S-rDNA amplified from chromosomal DNA was
employed as the template for TGGE sample preparation. A
variable region of 16S-rDNA was amplified using the
forward primer 341f 5'-CCTACGGGAGGCAGCAG-3'
and reverse primer 518r 5'-ATTACCGCGGCTGCTGG-3'.
A GC clamp (5'-CGCCCGCCGGCGGGCGGGCGGGG-
CGGGGGCACGGGGGG-3') was attached to the 5'-end
of the 341f primer (16). The PCR and DNA sequencing
procedures were identical to the 16S-rDNA amplification
conditions, with the exception of annealing temperature.
The TGGE system (Bio-Rad, Dcode
TM
, Hercules, CA,
USA) was operated in accordance with the manufacturer's
specifications. Aliquots (45 ml) of the PCR products were
electrophoresed on gels containing 8% acrylamide, 8 M urea,
Variation and Characterization of Bacteria Contaminating Dry Saunas
197
and 20% formamide in 1.5 ×TAE (Tris, acetate, and
EDTA) buffer system at a constant voltage of 100 V for
12.5 h, followed by 40 V for 0.5 h, with a temperature
gradient of 39~52. Prior to electrophoresis, the gel was
equilibrated to the temperature gradient for 30~45 min.
Amplification and identification of the TGGE band
DNA was extracted from the TGGE band and purified
with a DNA gel purification kit (Accuprep, Bioneer). The
purified DNA was then amplified with the same primers
and procedures used for TGGE sample preparation, except
that the GC clamp was not attached to the forward primer.
The amplified DNA was sequenced to identify the bacteria
based on 16S-rDNA sequence homology using GenBank
database.
RESULTS
TGGE patterns
The daily variations in the bacterial community collected
from the floors of the low and high temp saunas were
analyzed by the TGGE technique. The TGGE pattern for
the bacteria contaminating the low temp sauna was not
significantly different from that contaminating the high temp
sauna (Fig. 1). A range of 5~10 species was observed daily
in the low temp sauna, whereas 8~12 species contaminating
the high temp sauna based on the DNA band number.
Variations in DNA band number and DNA band position
(migration distance on electrophoretic gel) were not patterned
by specific days of the week. This result shows that the
bacteria contaminating the saunas may be opportunistic
and related to both user traffic and operating temperature of
a sauna.
Identification of DNA separated by TGGE
Twenty and 18 bacterial species were separated by
TGGE and identified by sequence homology in the low
and the high temp saunas, respectively (Tables 1 and 2).
Bacteria in Moraxella and Acinetobacter were selectively
detected in the low temp sauna, whereas bacteria in
Aquaspirilum, Chromobacterium, Aquabacterium, Gulben-
kiania, Pelomonas, and Aquitalea were selectively detected
in the high temp sauna during the 6-day sampling from
Monday-Saturday. The bacterial diversity contaminating the
saunas may be directly influenced by individual bacteria-
contaminated users. An uncultured bacterium (JN883765)
was detected daily in the low temp sauna, whereas Neisseria
flava and uncultured bacterium (JN883765) were detected
daily in the high temp sauna. The two bacteria that were
detected daily in the low or high temp saunas commonly
belonged to the normal microflora of specific organs of the
human body (Table 3), suggesting that the bacteria detected
in the saunas may be contaminants from user bodies but not
residents in the saunas. The user's body may be the main
source of bacteria which contaminate a sauna.
Figure 1. Thermal gradient gel electrophoresis (TGGE) profiles
of 16S-rDNA isolated from bacteria that were collected from floors
of two different saunas operated at 64 and 76. Each numbe
r
on electrophoresis gel indicates DNA band originated from
a
specific bacterial species. Abbreviations: M, Monday; T, Tuesday;
W, Wednesday; Th, Thursday; F, Friday; S, Saturday.
198 BS Kim, et al.
General characteristics of the bacteria detected by
TGGE
The general characteristics of the bacteria collected from
the low and high temp saunas was tabulated based on genus
or species information reported by other researchers or
from a database. As shown in Table 3, most of the bacteria
identified based on 16S-rDNA extracted from the TGGE
gel and collected from both the low and the high temp
saunas were not thermophiles except bacterium ODP-
193-27 (17), Bacillus megaterium (18), and Deinococcus
geothermalis (19). Bacillus megaterium is a spore-forming
thermoduric bacterium but not a thermophile. Thermophilic
and thermoduric bacteria were detected one to four times
over the 6 experimental days, whereas mesophilic bacteria
were detected less than three times during the entire sampling
period. In contrast, Neisseria flava (20) was detected in the
high temp sauna everyday over 6 days and an uncultured
bacterium (JN883765) was detected in both saunas every
day over the 6 days (21). Both bacterial species detected
each day are known to contaminate specific organs of
human body (20, 21); whereas most of the bacteria detected
in both the high and the low temp sauna are known to
inhabit natural habitats such as spring water, wastewater,
soil, seawater, and lake water (22~31). From this result, it
can be presumed that the human body may be the most
suitable carrier for bacteria because the human body is a
proper habitat for bacteria to temporarily survive or grow.
Table 1. Bacterial species identified based on sequence homology of 16S-rDNA extracted from electrophoresis gel (figure 1, 64). Therma
l
gradient gel electrophoresis was performed with the DNA extracted from the bacteria daily collected from low temp sauna from Monda
y
to Saturday.
Week: band number in TGGE gel
Bacteria (Genus or species)
Accession
code
Homology
(%)
Mon Tue Wed Thu Fri Sat
Bacterium ODP-193 AB084523 98 1
Uncultured bacterium HE649228 98 1 1 1
Enhydrobacter aerosaccus JX845725 98 2 2 2 2
Neisseria flava HF558370 98 3
Moraxella cuniculi AJ247221 99 1
Moraxella sp. KC119125 98 2
Uncultured bacterium JN883765 98 3 1 3 4 3 3
Moraxella pluranimalium NR042666 98 4 4
Acinetobacter radioresistens JF919868 97 5 4 4
Acinetobacter sp. GU430989 98 6 5 5
Bacillus megaterium JX311358 99 2 6
Acinetobacter seohaensis EU420936 98 5 3 5 7
Uncultured bacterium JF237408 99 4
Acinetobacter beijerinckii JN644620 98 5
Uncultured Acinetobacter JN866218 99 6 8
Leptothrix sp. JQ946028 97 6
Uncultured bacterium AB732642 98 7 7 9 7
Uncultured bacterium JF661828 97 8
Deinococcus geothermalis EU600161 97 9 6
Uncultured bacterium JN882031 99 10 7
*Bold letters: Bacteria selectively detected in 64 sauna
Variation and Characterization of Bacteria Contaminating Dry Saunas
199
DISCUSSION
Bacteria are ubiquitous organisms based on the diversity
of their habitats and natural ecosystems, such as animals
(intestine, skin, and genital organs), plants (leaves and roots)
and man-made structures (32~36). The most popular
man-made structures are buildings utilized as dwellings,
businesses, and manufacturing plants, which may be habitats
for heterotrophic bacteria due to the plentiful organic
compounds and the proper environmental conditions (37).
A sauna is a hot, dry room located inside a building, and the
environmental conditions are not suitable for any organisms
except thermophilic bacteria (1). Temperature is one of the
major environmental factors influencing bacterial growth
and has been artificially controlled to cultivate fermentation
bacteria, suppress harmful bacteria, or destroy pathogenic
bacteria (38~40). Generally, the temperature of a sauna is
60~80, which is sufficient to inhibit or stop growth of
mesophilic bacteria except spore-formers (41).
The mesophilic bacteria that contaminated both the low
and the high temp saunas may neither survive nor grow but
the thermophilic bacteria (bacterium ODP-193-27, B.
megaterium, D. geothermalis) can survive and grow in both
saunas based on their characteristics (17~19). However,
the growth of thermophilic bacteria contaminating both
saunas must be experimentally verified because a sauna is
an artificial location that satisfies only the temperature
conditions for thermophilic bacteria (42). The ecological
niche of bacteria is mineralization of organic compounds
by parasitism, symbiosis, and saprophytism (43~45). The
thermophilic bacteria that contaminated the saunas may
Table 2. Bacterial species identified based on sequence homology of 16S-rDNA extracted from electrophoresis gel (figure 1, 76). Therma
l
gradient gel electrophoresis was performed with the DNA extracted from the bacteria collected from high temp sauna from Monday to
Saturday.
Week: band number in TGGE gel
Bacteria (Genus or species)
Accession
code
Homology
(%)
Mon Tue Wed Thu Fri Sat
Bacterium ODP-193 AB084523 98 1 1 1 1
Enhydrobacter aerosaccus JX845725 98 2 2 2 2
Neisseria flava HF558370 98 3 3 3 3 2 1
Uncultured bacterium JN883765 98 4 4 4 4 3 2
Aquaspirillum serpens AB680863 100 5 5 4 3
Acinetobacter radioresistens JF919868 97 6 6 5 5 4
Acinetobacter sp. GU430989 98 6 6 5
Bacillus megaterium JX311358 99 7 7 6
Chromobacterium sp. HQ234407 98 5
Uncultured Aquabacterium sp. JQ288705 98 6
Gulbenkiania mobilis NR042548 97 8
Pelomonas sp. AB730488 97 7 7
Leptothrix sp. JQ946028 97 8 8
Acinetobacter beijerinckii JN644620 98 7 9 8 9 9
Uncultured bacterium AB732642 98 8 10 9 10 10
Aquitalea sp. JN208179 97 11
Deinococcus geothermalis EU600161 97 12 7
Uncultured bacterium JN882031 99 8
*Bold letters: Bacteria selectively detected in 76 sauna
200 BS Kim, et al.
grow by saprophytism because most bacteria were randomly,
occasionally, and discontinuously detected from both saunas
over the 6 experimental days.
Individuals travel domestically or in foreign countries and
Table 3. General characters of bacterial genus or species identified based on sequence homology of DNA extracted from electrophoresis
gel (Fig. 1). DNA used for thermal gradient gel electrophoresis was directly extracted from bacteria collected from 64 and 76 of dr
y
saunas.
Bacteria (Accession code)
Detection days
(LTS/HTS)
General characters or released information
Bacterium ODP-193-27 1/4
A thermophile capable of growing at 60~90, which were found in subsurface
of hydrothermal vent (17)
Enhydrobacter aerosaccus 3/4
A heterotrophic, mesophilic, non-pathogenic, gas-vacuolated, and facultative
anaerobic bacterium (22)
Neisseria flava 1/6
An non-pathogenic, mesophilic, and anaerobic bacterium that is often found in
the upper respiratory tract surface in humans (20)
Moraxella sp. 1/0
A mesophilic and opportunistically infective bacterium, and some species
belonging to this genus are commensal of mucosal surface (43)
Moraxella pluranimalium 2/0
Gram-negative, mesophilic, and heterotrophic bacterium that was isolated from
sheep and pig (44)
Acinetobacter radioresistens 3/3 A mesophilic, non-spore-forming, aerobic, and soil-dwelled bacterium (23)
Chromobacterium sp. 0/1
A mesophile that inhabits in soil and natural water is sometime is found in foods
(24)
Uncultured Aquabacterium sp. 0/1 It has been isolated and found from drinking water and freshwater spring (25)
Bacillus megaterium 2/3
This bacterium is able to survive in some extreme conditions such as desert
environments due to the spores it forms. (18)
Acinetobacter seohaensis 4/0
A Gram-negative, non-motile, and mesophilic bacterium that was isolated from
sea water of the Yellow Sea in Korea (26)
Deinococcus geothermalis 2/2 This is an extremely radiation resistant, moderately thermophilic bacterium (19)
Gulbenkiania mobilis 0/1 A mesophilic bacterium that was isolated from treated municipal wastewater (27)
Pelomonas sp. 0/1
A mesophilic, Gram-negative, non-spore-forming bacterium that was isolated
from industrial wastewater and haemodialysis water (28)
Leptothrix sp. 1/2
A filamentous and mesophilic bacterium that resides in organic matter-plentiful
aquatic environments (29)
Aquitalea sp. 0/1
A mesophilic, Gram-negative, and non-spore-forming bacterium that was isolated
from humic-lake samples (30)
Uc. Bacterium (HE649228) 3/0
A bacterium that was detected in a uranium mine tailing sediment-water interface
at Key Lake, Northern Saskatchewan
Uc. Bacterium (JN883765) 6/6 A bacterium belonging to normal gut microflora in human (21)
Uc. Bacterium (JF237408) 1/0
A bacterium belonging to human skin microflora related with atopic dermatitis
(45)
Uncultured Acinetobacter 2/0
A Gram-negative, non-motile, and mesophilic bacterium that was isolated from
Tibetan Plateau.
Uc. Bacterium (AB732642) 4/5 A bacterium detected in arsenic sediment
Uc. Bacterium (JF661828) 1/0
A bacterium belonging to microbial community in anaerobic digestion of carrot
waste (37)
Uc. Bacterium (JN882031) 2/1 A bacterium that was found in crude oil (31)
*UC, Uncultured bacterium; LTS, Low temp sauna; HTS, High temp sauna
Variation and Characterization of Bacteria Contaminating Dry Saunas
201
carry various bacteria between locations without realizing
that they have contaminated their bodies, clothes, and
baggage except in an emergency. Travelers are contaminated
with various microorganisms during travel by contacting
others, touching, visiting, and buying merchandise. The
surface of the human body is a temporary habitat for
bacterial growth due to the organic compounds excreted
with sweat and sebum. Mesophilic bacteria detected from
the saunas may have originated from natural or artificial
environments; however, the thermophilic bacteria could
have originated from a foreign country based on their
general characteristics (Table 1).
In a previous study (1), bacterial samples were collected
from a sauna operated at 75~80 on July 25, 2012 and
most were thermoduric and spore-forming bacteria belonging
to the Bacillus genus. The bacterial community collected
from saunas during the summer is significantly different
from that collected during the winter, which may be caused
by differences in environmental conditions between summer
and winter (46). Plentiful organic compounds, high tem-
perature, and high humidity of a natural environment during
the summer may be a more proper condition for Bacillus
sp. than other bacteria. The seasonal differences in the
bacterial communities that contaminated the saunas may
not be a general phenomenon because sampling period,
number, and area in each study were not equivalent.
In this study, the daily variation in bacteria contaminating
the saunas may not be proportional to the number, frequency
of use, or cleanliness condition of users but may be
randomly and opportunistically influenced by the bacterial
species contaminating the user's' bodies. The bacteria
commonly and frequently detected from both saunas can
survive on human body for a relatively longer time than
those rarely detected in one of the saunas. General house
conditions may be a more proper than natural environment
for mesophilic bacteria to grow and for thermophilic bacteria
to survive, considering the plentiful amount of organic
compounds wasted from food.
Our results indicate that both the mesophilic and
thermophilic bacteria detected from the saunas could have
originated from the user's house and not their body because
most people wash their bodies one or two times per day. No
human pathogenic or harmful bacteria were in either sauna
in this study. The bacteria detected from both saunas over
the 6 days provided useful information about the origin of
bacterial communities contaminating saunas because the
saunas are not a proper and stable habitat for mesophilic
bacteria to grow. Saunas may be a specific place to collect
various bacteria from the human body but not permit
growth of mesophilic bacteria. Most pathogens can grow at
mammalian temperature but do not grow at the temperature
of a sauna. Bacteria can convert from saprophytism to
virulence only while growing continuously (47).
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... Previous research by Lee et al. (2012) showed that spore-forming bacteria such as Bacillus sp., Virgibacillus sp., and non-spore-forming thermophilic bacteria like Tepidomonas sp., and Pseudoxanthomonas sp., as well as non-thermophilic bacteria belonging to the genera Stenotrophomonas and Janthinobacterium, were detected by TGGE [62]. In other research, Kim et al. (2013) studied the bacterial diversity of two dry saunas that were operated at lower and higher temperatures (64 • C and 76 • C, respectively). Members of the genera Moraxella and Acinetobacter were detected in the low-temperature sauna, whereas strains belonging to the genera Aquaspirillum, Chromobacterium, Aquabacterium, Gulbenkiania, Pelomonas, and Aquitalea dominated the high-temperature sauna. ...
... Members of the genera Moraxella and Acinetobacter were detected in the low-temperature sauna, whereas strains belonging to the genera Aquaspirillum, Chromobacterium, Aquabacterium, Gulbenkiania, Pelomonas, and Aquitalea dominated the high-temperature sauna. Thermophilic strains such as Bacillus megaterium and Deinococcus geothermalis were also found in both low-and high-temperature saunas [63]. In another report, Tanner et al. (2017) reported a similar taxonomic distribution in another sauna sample characterized by a high abundance of A-, ß-, and G-proteobacteria, and, to a lesser extent, Bacteroidetes, Actinobacteria, and Acidobacteria. ...
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As it is the case with natural substrates, artificial surfaces of man-made devices are home to a myriad of microbial species. Artificial products are not necessarily characterized by human-associated microbiomes; instead, they can present original microbial populations shaped by specific environmental—often extreme—selection pressures. This review provides a detailed insight into the microbial ecology of a range of artificial devices, machines, and appliances, which we argue are specific microbial niches that do not necessarily fit in the “build environment” microbiome definition. Instead, we propose here the Microbiome of Things (MoT) concept analogous to the Internet of Things (IoT) because we believe it may be useful to shed light on human-made, but not necessarily human-related, unexplored microbial niches.
... Lee et al. [25] characterized the bacterial community contaminating the floor of a hot and dry sauna, which proved rich in Firmicutes, Gamma-proteobacteria and Beta-proteobacteria. Another report by Kim et al. [26] of a 64ºC dry sauna revealed a population with Firmicutes, Gamma-proteobacteria, Beta-proteobacteria and Deinococci as the most frequent taxa. As mentioned above, our samples were rich Beta-and Gammaproteobacteria, although we also detected Alpha-proteobacteria, which was absent in the works by Kim et al. [25] and Lee et al. [26]. ...
... Another report by Kim et al. [26] of a 64ºC dry sauna revealed a population with Firmicutes, Gamma-proteobacteria, Beta-proteobacteria and Deinococci as the most frequent taxa. As mentioned above, our samples were rich Beta-and Gammaproteobacteria, although we also detected Alpha-proteobacteria, which was absent in the works by Kim et al. [25] and Lee et al. [26]. Reciprocally, we did not detect Firmicutes or Deinococci with our 16S rRNA analysis, while both taxa were found by those two previous reports. ...
Preprint
Lipases are key biocatalysts with important biotechnological applications. With the aim of isolating robust lipolytic microbial strains, we have analyzed the bacterial communities inhabiting two domestic extreme environments: a thermophilic sauna and a dishwasher filter. Scanning electron microscopy revealed biofilm-forming and scattered microorganisms in the sauna and dishwasher sample, respectively. A culture-independent approach based on 16S rRNA analysis indicated a high abundance of Proteobacteria in the sauna sample; and, a large amount of Proteobacteria, Firmicutes, Cyanobacteria and Actinobacteria in the dishwasher filter. With a culture-dependent approach, we isolated 48 bacterial strains, screened their lipolytic activities on media with tributyrin as the main carbon source, and finally selected five isolates for further characterization. These strains, all of them identified as members of the genus Bacillus, displayed optimum lipolytic peaks at pH 6.5 and with 1-2% NaCl, and the activity proved very robust at a wide range of pH (up to 11.5) and added NaCl concentrations (up to 4%). The thermal, pH and salt robustness of the selected isolates is a valuable attribute for these strains, which are promising as highly tolerant biodetergents. To our knowledge, this is the first report regarding the isolation from an indoor environment of Bacillus strains with a high potential for industry.
... Lee et al. [25] characterized the bacterial community contaminating the floor of a hot and dry sauna, which proved rich in Firmicutes, Gamma-proteobacteria and Beta-proteobacteria. Another report by Kim et al. [26] of a 64ºC dry sauna revealed a population with Firmicutes, Gamma-proteobacteria, Beta-proteobacteria and Deinococci as the most frequent taxa. As mentioned above, our samples were rich Beta-and Gammaproteobacteria, although we also detected Alpha-proteobacteria, which was absent in the works by Kim et al. [25] and Lee et al. [26]. ...
... Another report by Kim et al. [26] of a 64ºC dry sauna revealed a population with Firmicutes, Gamma-proteobacteria, Beta-proteobacteria and Deinococci as the most frequent taxa. As mentioned above, our samples were rich Beta-and Gammaproteobacteria, although we also detected Alpha-proteobacteria, which was absent in the works by Kim et al. [25] and Lee et al. [26]. Reciprocally, we did not detect Firmicutes or Deinococci with our 16S rRNA analysis, while both taxa were found by those two previous reports. ...
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Lipases are key biocatalysts with important biotechnological applications. With the aim of isolating robust lipolytic micro-bial strains, we have analyzed the bacterial communities in-habiting two domestic extreme environments: a thermophilic sauna and a dishwasher filter. Scanning electron microscopy revealed biofilm-forming and scattered microorganisms in the sauna and dishwasher sample, respectively. A culture-in-dependent approach based on 16S rRNA analysis indicated a high abundance of Proteobacteria in the sauna sample; and, a large amount of Proteobacteria, Firmicutes, Cyanobacteria and Actinobacteria in the dishwasher filter. With a culture- dependent approach, we isolated 48 bacterial strains, screened their lipolytic activities on media with tributyrin as the main carbon source, and finally selected five isolates for further characterization. These strains, all of them identified as members of the genus Bacillus, displayed optimum lipo-lytic peaks at pH 6.5 and with 1-2% NaCl, and the activity proved very robust at a wide range of pH (up to 11.5) and added NaCl concentrations (up to 4%). The thermal, pH and salt robustness of the selected isolates is a valuable attribute for these strains, which are promising as highly tolerant bio-detergents. To our knowledge, this is the first report regarding the isolation from an indoor environment of Bacillus strains with a high potential for industry.
... However, Aquitalea strains are probably not rare in the environment as proved by recent results of culture-independent studies as well as cultivation methods. The denaturing gradient gel electrophoresis method using the 16S rRNA gene allowed the identification of members (or representatives, strains, isolates) of the genus Aquitalea sp. in the secondary treated wastewater (Turki et al., 2013) as well as in the high temperature sauna using thermal gradient gel electrophoresis (Kim et al., 2013). The culture-independent techniques allowed determination of members (or representatives, strains, isolates) of the genus Aquitalea sp. as the minor part of microbial communities associated with the traps and leaves of carnivorous plants (Caravieri et al., 2014;Gray et al., 2012). ...
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Strain P1297T was isolated in the frame of a project aimed on the psychrotolerant microbiota occurring in water sources. The strain initially identified as a tentative species of the genus Aeromonas was rod-shaped, Gram-stain-negative, facultatively anaerobic and oxidase-positive. Subsequently, 16S rRNA gene sequence analysis placed strain P1297T within the class Betaproteobacteria and showed Aquitalea magnusonii TRO-001DR8T as the closest phylogenetic relative with 99.28 % 16S rRNA gene sequence similarity. Digital DDH and average nucleotide identity (ANI) were determined to evaluate the genomic relationship between strain P1297T and Aquitalea magnusonii CCM 7607T. Digital DDH estimation (31.3 ± 2.46 %) as well as ANI (85.6001 %; reciprocal value 85.3277 %) proved the dissimilarity of strain P1297T. Further investigation using phenotyping, automated ribotyping, whole-cell protein profiling and PCR-fingerprinting methods showed a distinct taxonomic position of strain P1297T among hitherto described species of the genus Aquitalea. DNA–DNA hybridization experiments revealed low binding values between strain P1297T and Aquitalea magnusonii CCM 7607T (57 ± 3 %) and Aquitalea denitrificans CCM 7935T (41 ± 5 %). The DNA G+C content of strain P1297T was 60.3 mol%. The predominant fatty acids were C16 : 1ω7c/ iso-C15 : 0 2-OH (47.0 %), C16 : 0 (24.5 %) and C18 : 1ω7c (10.6 %), and the quinone system contained predominantly ubiquinone Q-8. The polar lipids detected were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, two unidentified phospholipids and one unidentified aminophospholipid. Obtained results of genotypic and chemotaxonomic methods clearly proved that strain P1297T represents a novel species of the genus Aquitalea, for which the name Aquitalea pelogenes sp. nov. is proposed. The type strain is P1297T ( = CCM 7557T = LMG 28989T = CCUG 67440T).
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