Science topic

Zinc - Science topic

A metallic element of atomic number 30 and atomic weight 65.38. It is a necessary trace element in the diet, forming an essential part of many enzymes, and playing an important role in protein synthesis and in cell division. Zinc deficiency is associated with ANEMIA, short stature, HYPOGONADISM, impaired WOUND HEALING, and geophagia. It is known by the symbol Zn.
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The electrochemical performance was studied using a three-electrode system which involves the active material as a working electrode, a platinum wire as a counter electrode, and a saturated calomel electrode (SCE) as a reference electrode. The electrolyte used was 6M KOH and the material is let's say zinc stannate (Zn2SnO4).
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To determine the theoretical capacity of a supercapacitor using a synthesized sample like zinc stannate (Zn2SnO4) as the working electrode, Sana Hanif can follow a few steps that involve both experimental data collection and a bit of calculation based on the electrochemical performance of the material:
1. Collect Cyclic Voltammetry (CV) Data: Start by conducting cyclic voltammetry tests on the three-electrode system Sana Hanif mentioned. This will involve sweeping the potential at a specific scan rate and measuring the current response, which helps in understanding the charge storage capacity of your active material.
2. Integrate the CV Curve: Use the current vs. potential curve from the CV data to calculate the area under the curve. This area can be translated into charge (Q) using the formula:
\[
Q = \int I \, dv
\]
where \( I \) is the current and \( dv \) is the differential voltage.
3. Calculate the Specific Capacitance (C): Once Sana Hanif have the charge, Sana Hanif can calculate the specific capacitance using:
\[
C = \frac{Q}{m \cdot \Delta V}
\]
Here, \( Q \) is the total charge, \( m \) is the mass of the active material, and \( \Delta V \) is the potential window used in the CV measurement.
4. Determine Theoretical Capacity: The specific capacitance obtained can provide an estimate of the theoretical capacity when multiplied by the mass of the active material:
\[
\text{Theoretical Capacity} = C \times m
\]
5. Use Galvanostatic Charge-Discharge (GCD) Measurements: It can also be insightful to conduct GCD tests to corroborate the specific capacitance values. These measurements provide another means to calculate the charge stored by evaluating the discharge curve's slope.
By performing these steps carefully and accurately, Sana Hanif should be able to estimate the theoretical capacity of your zinc stannate-based supercapacitor. Keep in mind that factors like electrode preparation and electrolyte accessibility can influence the results. Don’t forget to thoroughly examine the assumptions and conditions under which the measurements are taken, as they are crucial for reliable calculations. Good luck with your analysis! 🍀
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How can I calculate the Nitrogen (N), Phosphorus (P), Potassium (K), sulfur (S), and Zinc (Zn) content in rice grain and Straw and their uptake in rice grain and straw? Moreover, could you please mention the unit of nutrient (N, P, K, S & Zn) uptake in grain and straw?
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Nitrogen (N): The total nitrogen content is usually determined using Kjeldahl or an elemental analyzer (Dumas method).
Phosphorus (P), potassium (K), sulphur (S), zinc (Zn): The samples are first digested (wet or dry), and then the contents are determined by ICP-OES/ICP-MS or spectrophotometer, flame photometer, etc. The results are commonly expressed as follows.
Measurement results are commonly expressed in the following ways:
Expressed as mass percent (%). For example, the N content of a certain seed is 1.2%, P content is 0.2%, etc.
@@Expressed in milligrams per kilogram (mg/kg) or grams per kilogram (g/kg) for trace/concentrate elements. For example, Zn is 25 mg/kg, etc.
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I have been evaluating collector performance under different pH conditions using pure minerals (Zinc Ferrite, Zinc Oxide, Hematite, and Magnetite) with a particle size of <20 µm. The experiments were conducted in a Smith-Partridge tube for microflotation. I observed unexpected trends regarding the effect of pH and collector type (cationic or anionic) on floatability. These trends do not align with zeta potential measurements or the expected behavior reported in the literature.
After reviewing previous studies, I realized that the "optimal" collector concentration I used (1×10⁻³ M) is about ten times higher than what is typically reported for similar systems. I am concerned that this could cause reagent oversaturation, potentially altering the interaction between collectors and mineral surfaces and their molecular or ionic forms.
Could excessive collector concentration lead to unexpected flotation behavior in fine-particle systems by modifying the adsorption mechanism or surface charge? Have others encountered similar discrepancies, and how did you address them?
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Floatability in collectors is related to wettability and therefore to maximum adsorption on the mineral. The other concentration of the collector can interfere with the process. Therefore, for each collector you need to estimate the maximum adsorption. It depends on the nature of the mineral, the particle size, the pH of the collector...
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Hello everyone.
I have been trying to deposit ZnO and recrystallize the film at high temperature on sapphire. However, it seems like I am not getting enough signals from the XRD. Does anyone know why I am not getting sharp peaks for ZnO?
The process is as follows,
- Deposit ZnO on sapphire (0001) through E-beam deposition (seems like metallic Zinc is being deposited) - I deposited 200nm(checked with surface profilometer)
- Oxidize the ZnO at 600C with 10L/min for 1 hr at the furnace.
(I also increased the oxidation/recrystallization temperature to 1000C but the XRD result is analogous)
I have attached the XRD of the 200 nm ZnO film on sapphire.
I used high resolution XRD, Ge004 cut, and 0 degree scan. 1D scan gives me better result, but I think 0 degree scan should already show sharp ZnO signals considering the thickness and the grain size of the ZnO.
If anyone had a similar issue or experience please let me know the resolution to form crystalline ZnO through recrystallization!
Best,
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it is difficult to know the fault at the outset but here are some things you should consider: 1. Initial Composition of the Deposited Film
Problem: Electron-beam evaporation of ZnO can decompose the material into metallic Zn and O₂, especially if the oxygen pressure in the chamber is insufficient during deposition. If the as-deposited film is primarily metallic Zn, subsequent oxidation might be incomplete.
Solution:
Verify the film composition before oxidation using techniques like XPS (X-ray Photoelectron Spectroscopy) or EDS (Energy-Dispersive Spectroscopy).
If metallic Zn is being deposited, consider depositing ZnO directly using a ZnO source under controlled conditions (oxygen pressure, slow deposition rate).
2. Oxidation/Recrystallization Conditions
Problem:
At 600°C: Oxidation at 600°C might be insufficient to fully convert a thick Zn layer (200 nm) into crystalline ZnO, especially if the O₂ flow (10 L/min) does not penetrate the film uniformly.
At 1000°C: While high temperatures promote crystallization, sapphire (Al₂O₃) might react with ZnO, forming secondary phases like ZnAl₂O₄ (spinel) or causing Al diffusion into the film, which would inhibit the formation of pure ZnO.
Solution:
Optimize oxidation: Use a furnace with a controlled atmosphere (pure O₂) and increase the oxidation time (>1 hour).
Avoid substrate reactions: Try intermediate temperatures (800-900°C) and check for secondary phase formation using XRD or TEM. If reactions occur, consider using a buffer layer (e.g., MgO) between ZnO and sapphire.
Grain Size and Morphology
Problem: If the ZnO grains are too small (<50 nm), XRD peaks will broaden and lose intensity. This could be due to inefficient recrystallization during annealing.
Solution:
Increase the annealing time (4-6 hours) to promote grain growth.
Use Rapid Thermal Annealing (RTA) instead of a conventional furnace to avoid impurity diffusion and enable faster crystallization.
4. XRD Measurement Parameters
Problem:
A ω-2θ scan (0-degree scan) might not detect peaks if the crystal alignment is incorrect or if the film is textured in an unexpected orientation.
Using a Ge(004) monochromator might filter out weak ZnO signals.
Solution:
Perform a conventional θ-2θ scan over a wide range (e.g., 20-80° 2θ) to cover the main ZnO peaks (e.g., (002), (101), (102)).
Use Grazing Incidence XRD (GI-XRD) to enhance the signal from the thin film.
Verify substrate alignment (ω and φ adjustments) to ensure ZnO crystal planes meet the Bragg condition.
5. Possible Structural Defects
Problem:
If the film is amorphous or has a high density of defects (dislocations), XRD peaks will be weak.
Thermal stress during rapid cooling might cause microcracks, reducing crystallinity.
Solution:
Perform annealing in an O₂ atmosphere with slow cooling (1-2°C/min) to relieve stress and improve crystallinity.
Use SEM or AFM to evaluate surface morphology (cracks, porosity).
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I am trying to coat my sample through doctorblade but i am not able to get uniform coating, when i trying to spread my sample at some areas coating is uniform some areas its not uniform. One of my friend told may be my slurry too thick can anyone please help me with this
the ratio i am using is 0.160 gm my active material mostly zinc 0.040gm binder PVB and 1 ml ethanol
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Yes, you may no longer need a help after you go through the Ossila's technical report that found on the attached link below. Please, carefully follow it's contents. Best regards...
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During the synthesis of ZnO NPs via assisted microwave method (800kW, 5 mins), should we add all the NaOH solution (250mL, 0.5M) to the zinc acetate solution (250 mL, 0.2M) under constant stirring? is there an indicator that we should stop adding NaOH solution? Also how long are we going to stir the solution? is it with heat or without heat? if so what would be the requires temperature?
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Hello shukur.
Am working with pure plant bioactive for synthesis ZnONps using zinc nitrate as precursor. The mixture turns from colorless to pale yellow color, but addition of a drop of NaOH turn the solution to light pink? Why pink
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I am confused which reference electrode i should use for simulated seawater for corrosion investigation
Some people reported Ag/AgCl and some calomel which one is best and why ?
My wroking electrode as zinc coating on steel
counter electrode platinium wire
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Dear Dr. Paul Thomas ,
I suggesty you to have a look at the following, interesting document:
“Understanding Saturated Calomel Reference Electrodes: Composition, Uses, and Considerations”
By KINTEK – Solution for researching
Available at:
My best regards, Pierluigi Traverso.
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Hello everyone,
I'm planning to study the interactome of an endogenous zinc protein in HEK293T cells. The culture medium is normal DMEM so is there zinc in the medium or from any sources that the endogenous can function in the cell? Do I need to supplement Zn to the cells?
Thank you in advance!
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Thank you Matthew Wheal for the suggestion
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Hello everyone.
I'm currently facing the following problem: I'm doing with Amber MD simulations on a protein that has metals ions (zinc and copper) in it to perform its biological activity and to be more stable. When I do conformational clustering with Amber, I find out that in most of the representative structures (one for each cluster), the metal ions are not in the correct position, instead they were moved some angstrom away from the protein. I include some pics to make the problem more understandable: the red structure is the one representing cluster 0 while the purple one is the initial pdb structure used for the simulation. It can be seen that the copper ion is quite distant from the original position as it runned away.
Do need to apply some restrains on the ions in the simulation .in files (minimization, heating, equilibration and real med simulation) or do I need to change some parametrizations in the tleap protocol I used?
I report the latter here:
module load StdEnv/2023 gcc/12.3 openmpi/4.1.5 cuda/12.2 amber/22.5-23.5 # Load the necessary modules for using Amber
pdb4amber -i dimer_c.pdb -o dimer_c_amber.pdb # Make the PDB file readable by Amber
reduce -Trim dimer_c_amber.pdb > dimer_c_amber_noH.pdb
tleap
source leaprc.protein.ff19SB # Load the force field for proteins
loadoff atomic_ions.lib # Load the library file for divalent ions
loadamberparams frcmod.ionslm_1264_opc # Load the parameter file for divalent ions
source leaprc.water.opc # Load the opc water model
dimer = loadpdb dimer_c_amber_noH.pdb
charge dimer
solvateOct dimer OPCBOX 10.0 # Set a truncated octahedron with a thickness of 10 Angstrom as the solvent box
addIonsrand dimer Na+ #Na Cl- #Cl # Set the number of ions to add to neutralize the system charge (see Matlab script)
saveAmberParm dimer dimer_c_amber_noH_solv.prmtop dimer_c_amber_noH_solv.inpcrd # Save the topology parameters and coordinates of the new structure
check dimer
savepdb dimer dimer_c_amber_noH_solv.pdb # Save the new structure
Thank you very much
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Metal ions moving away from the protein active site during MD simulations may be due to lack of proper restraints or improper ion parameters. To resolve this, apply position restraints to the metal ions, ensuring they stay near the active site. Additionally, check the force field and ion parameters for accuracy.
All of which can be easily done at mdsim360.com, a new platform that lets you run MD simulations entirely online without local installation.
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In order to obtain 1 gm of Tio2 about 3.7ml of TTIV( Titanium isopropoxide precursor having 27.8-28.6% Tio2) was used and also for obtaining 1gm of Zno zinc acetate of 2.7g in 50ml is taken. Both stirred separately and later zinc acetate solution added to TTIV solution and stirred for some time. After that about 2gm NaoH in 50ml added to this mixture and stirred for some time. Washed, dried and annealed about 600c in 2 hour...after all this my Xrd results didn't have any tio2 peaks? where am i missing? A stabilizer? Any Chelatin agent? pls anyone help me out. What will be the possible reason for the Tio2 peak missing?
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Yes dear, I'm afraid you miss a little tough. For that, I cited from [1] the final step before going for XRD analysis:
The ZnO/TiO2 nanocompasite particles formed were then crushed using a mortar for five minutes until the distribution of the particles making up the nanocomposite was mixed homogeneously. The fabricated particles were characterized using XRD with angle range of two thetas 20o to 80o
Hope the article is totally helpful. Best regards ….
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Biofertilizers are aerobic microorganisms especially the commercially available ones. In conventional paddy i came across recommendations of using Azotobactor, Phosphate Solubilizing Bacteria, Zinc Solubilizing Bacteria, Potassium Solubilizing bacteria (KSB) etc. In the submerged conditions what is their efficiency and impact on paddy?
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Biofertilizers play a crucial role in enhancing the efficiency of conventional paddy cultivation in stagnant water conditions by improving nutrient availability, reducing chemical fertilizer dependency, and promoting environmental sustainability. Nitrogen-fixing bacteria like Azospirillum thrive in anaerobic waterlogged environments, providing a 20–25% reduction in nitrogen fertilizer use, while phosphate-solubilizing bacteria (PSB) enhance root development and phosphorus uptake. Plant growth-promoting rhizobacteria (PGPR) like Pseudomonas fluorescens further boost nutrient absorption and suppress pathogens, contributing to a 10–20% yield increase when biofertilizers are combined with reduced chemical fertilizers. Additionally, biofertilizers reduce greenhouse gas emissions and nitrate leaching, making them environmentally friendly. However, stagnant water conditions can limit the activity of aerobic microorganisms, necessitating the selection of strains adapted to waterlogged soils. Combining biofertilizers with organic amendments like farmyard manure or compost improves their efficiency by providing substrates for microbial activity. With proper integration and management, biofertilizers enhance both productivity and sustainability in paddy farming systems.
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We were using the Zinc database for the virtual compound library in our studies, but there have been problems downloading a large number of compounds for a while. Are there different databases that can be used or how can I solve this problem in the Zinc database?
📷
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Hi Zeynep Yağmur Babaoğlu,
Maybe you can refer to databases provided by TargetMol (website: https://www.targetmol.com) . TargetMol provides REAL Database (6 billion compounds) and TOPSCIENCE Datebase (26million compounds) for virtual screening. For more information, you can also contact us at sales@targetmol.com.
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1) Measurement by Cobas integra
OR
2) Colorimetric kit (5-Br-PAPS method)
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Use atomic absorption spectroscopy to analyze zinc in urine and blood.
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After constructing a CullZn symmetric cell and running 5 cycles at 10 mAh, I want to disassemble the cell for SEM.
At this time, the glass fiber used as a separator on the electrode is stuck and cannot be removed by cleaning with a sonicator, causing GF to appear in the SEM image.
Is there any way to preserve the Zn deposited on the electrode and remove only the GF?
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How does the SEM images with the glass fibres look? If the fibres are charging a gentle deposition (5nm Pt or AuPd or C) may help.
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what is the role of NaOH during the synthesis of zinc nanoparticles? does it directly participate in the zinc reduction reaction? does OH compete with the plant extract in synthesizing zinc nanoparticles? any how do we raise the PH to 12 to accurately produce zinc nanoparticles and obtain the white percipitate?
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Dear all, basic pH is essential for three reasons, two of them areinterconnected proprties. Basic pH hinder the formation of agglorates, thus, fine nanoparticles are obtained so. The third property that is governed by pH is the form/type of crystal structure of the ZnO NPs. My Regards
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Any process-flow-diagram available?
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Zinc-Dust Process:
Some important producers still use the zinc-dust process, which was
developed by BASF.
The basic reactions are:
Zn + 2SO2 = ZnS2O4
ZnS2O4 + 2NaOH = Na2S2O4 + Zn(OH)2
An aqueous slurry of zinc dust is treated in a stirred reactor with cooling at 40 degree C with liquid or gaseous sulfur dioxide to give zinc dithionite. After completion of the reaction the solution is passed through a filter press to remove unreacted zinc dust and impurities from the zinc. The zinc is then precipitated from the zinc dithionite by adding sodium carbonate or sodium hydroxide in stirred vessels. The zinc carbonate or hydroxide is removed in filter presses. Anhydrous sodium dithionite is precipitated from the clarified sodium dithionite solution by concentration under vacuum and addition of sodium chloride at > 60 degree C. It is filtered, washed with methanol, and dried at 90 – 100 degree C.
Reference: "Sulfites, Thiosulfates, and Dithionites". Ullmann's Encyclopedia of Industrial Chemistry. Wiley Online Library. doi:10.1002/14356007.a25_477. ISBN 978-3527306732.
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How can I produce a liquid fertilizer without precipitation and crystals and stable with the following percentages that is completely soluble?
10% nitrogen
Zinc 8%
Boron 5%
thank you
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Besides cheapness, availability and less chemical potential, what other reasons can be mentioned?
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Zinc metal is commonly used in gold cementation because it has a higher reactivity than gold, making it an effective reducing agent. In the process of gold extraction from cyanide solutions, zinc displaces gold from the solution through a redox reaction, where zinc is oxidized, and gold is reduced and precipitated out as a solid metal. This method, known as the Merrill-Crowe process, is preferred because zinc is relatively inexpensive, widely available, and can efficiently precipitate gold even in low concentrations, making it a cost-effective choice for large-scale gold recovery operations.
I hope this helps.
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I have seen several figures for the daily intake of zinc, I need the latest and correct method
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I'm talking about the normal human dietary consumption.
The question came up as a result of findings on metal intake of human from vegetable and medicinal plants.
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I am getting extra peaks in my XRD graph of essential oil mediated zno nanoparticle which supposed to be of zinc hydroxy nitrates from the literature review. Would this sharp zinc hydroxy nitrate peak has any impact on the membrane stabilizing activity and antimicrobial activity.
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I am not an expert in this field, but I am very interested and have researched to find an answer. I received some assistance from tlooto.com for this response. Could you please review the response below to see if it is correct?
The presence of zinc hydroxy nitrate in ZnO nanoparticle synthesis can affect both membrane stabilizing and antimicrobial activities. Zinc hydroxy nitrate itself exhibits antimicrobial properties [3][4], potentially enhancing the overall efficacy of ZnO nanoparticles. The sharp peaks in your XRD graph indicate a significant presence of zinc hydroxy nitrate, which might alter the interaction of the nanoparticles with microbial membranes, thus enhancing their stabilizing activity [5]. However, the exact impact depends on the concentration and specific microbial strains involved. Further experimental validation is crucial to ascertain these effects [1][2].
Reference
[1] Tiwari, V., Mishra, N., Gadani, K., Solanki, P., Shah, N., & Tiwari, M. (2018). Mechanism of Anti-bacterial Activity of Zinc Oxide Nanoparticle Against Carbapenem-Resistant Acinetobacter baumannii. Frontiers in Microbiology, 9.
[2] Pezzuto, J., Reddy, L. S., Nisha, M., Joice, M., & Shilpa, P. (2014). Antimicrobial activity of zinc oxide (ZnO) nanoparticle against Klebsiella pneumoniae. Pharmaceutical Biology, 52, 1388 - 1397.
[3] Kaur, T., Putatunda, C., Vyas, A., & Kumar, G. (2020). Zinc oxide nanoparticles inhibit bacterial biofilm formation via altering cell membrane permeability. Preparative Biochemistry & Biotechnology, 51, 309 - 319.
[4] Shahbazi, Y., & Shavisi, N. (2018). Chitosan Coatings Containing Mentha spicata Essential Oil and Zinc Oxide Nanoparticle for Shelf Life Extension of Rainbow Trout Fillets. Journal of Aquatic Food Product Technology, 27, 986 - 997.
[5] Hamza, Z. S. (2020). Antibacterial activity of Zinc Oxide Nanoparticle (ZnONP) Biosynthesis by Lactobacillus plantarium aganist pathogenic Bacteria. Indian Journal of Forensic Medicine & Toxicology.
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Zinc oxide, Zinc carbonate in calamine
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Dear Colleague,
I hope this message finds you well. Titrating Zinc Oxide (ZnO) in Calamine Lotion using complexometric titration involves several steps to accurately determine the zinc content. Below is a detailed and logical protocol for this process:
Materials and Reagents
  1. Calamine Lotion Sample: Containing ZnO
  2. Ethylenediaminetetraacetic acid (EDTA): Standard solution, typically 0.01 M or 0.05 M
  3. Ammonium Buffer Solution: pH 10
  4. Eriochrome Black T Indicator: or other suitable metal ion indicators (e.g., Murexide)
  5. Deionized Water
  6. Hydrochloric Acid (HCl): Concentrated, for dissolving the sample
  7. Ammonium Hydroxide (NH4OH)
  8. Pipettes, Burettes, and Volumetric Flasks
  9. Magnetic Stirrer and Stir Bars
  10. Beakers and Conical Flasks
Protocol
  1. Sample Preparation:Weigh a precise amount (typically 1-2 g) of the Calamine Lotion sample into a beaker. Add approximately 50 mL of deionized water to the beaker. Add concentrated HCl dropwise to dissolve the ZnO in the sample completely. Continue adding HCl until no solid remains.
  2. pH Adjustment:Adjust the pH of the solution to around 10 using ammonium hydroxide. This is crucial as EDTA forms a stable complex with Zn^2+ ions at this pH.
  3. Buffer Addition:Add 10 mL of ammonium buffer solution (pH 10) to the sample solution. This buffer maintains the pH during the titration.
  4. Indicator Addition:Add a few drops of Eriochrome Black T indicator to the buffered sample solution. The solution should turn wine-red in the presence of Zn^2+ ions.
  5. Titration:Fill a burette with the standard EDTA solution. Slowly titrate the sample solution with the EDTA solution while continuously stirring the sample with a magnetic stirrer. The endpoint of the titration is reached when the color changes from wine-red to pure blue, indicating that all Zn^2+ ions have complexed with EDTA.
  6. Calculation:Record the volume of EDTA solution used to reach the endpoint. Calculate the concentration of ZnO in the Calamine Lotion using the following formula: Concentration of ZnO=(VEDTA×MEDTA×MZnOmsample)\text{Concentration of ZnO} = \left( \frac{V_{EDTA} \times M_{EDTA} \times M_{ZnO}}{m_{sample}} \right)Concentration of ZnO=(msample​VEDTA​×MEDTA​×MZnO​​)Where:VEDTAV_{EDTA}VEDTA​ = Volume of EDTA solution used (L) MEDTAM_{EDTA}MEDTA​ = Molarity of EDTA solution (mol/L) MZnOM_{ZnO}MZnO​ = Molar mass of ZnO (81.38 g/mol) msamplem_{sample}msample​ = Mass of the Calamine Lotion sample (g)
Example Calculation
Assume you titrated 1.00 g of Calamine Lotion with 0.01 M EDTA solution and used 25.0 mL (0.025 L) of EDTA to reach the endpoint.
Concentration of ZnO=(0.025×0.01×81.381.00)=0.02034 g/mL\text{Concentration of ZnO} = \left( \frac{0.025 \times 0.01 \times 81.38}{1.00} \right) = 0.02034 \text{ g/mL}Concentration of ZnO=(1.000.025×0.01×81.38​)=0.02034 g/mL
This result indicates that the concentration of ZnO in the Calamine Lotion is 0.02034 g/mL.
Notes and Tips
  • Indicator Choice: While Eriochrome Black T is commonly used, other indicators like Murexide can also be used depending on the specific requirements and availability.
  • Accurate pH: Maintaining the correct pH is critical for the stability of the Zn-EDTA complex. Always verify the pH before starting the titration.
  • Sample Preparation: Ensure the sample is completely dissolved and free of particulates to avoid inaccuracies in the titration.
By following this protocol, you can accurately titrate ZnO in Calamine Lotion using complexometric titration.
Reviewing the protocols listed here may offer further guidance in addressing this issue
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How to get activity for structures to be used for QSAR studies?
Like ec50 or pIC50
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Can i perform MD simulation with 5,000ps simulation time. I once a publication which they used only 2,200ps simulation time. The software they used was Biovia Discovery Studio suite.
Can i also increase the simulation time to 5,000ps and cite the article ?
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Methods that are available for extraction of Zinc from Flue gas cleaning residues, especially of Iron and Steel Sector. What are the success ratio and purity of zinc that are extracted?
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Using Hydrometallurgical process i.e. a method involving aqueous media for recovery of metals from concentrates/residual materials. The process is a continuous process and involves preparation of mother liquor by mixing Ammonium Chloride and Calcium Chloride in Water. The flue gas cleaning residue is mixed with mother liquor at a pH below 5.8 and H2O2 is added in the leaching tank to dissolve the metallic constituents like zinc oxide in the flue gas cleaning residue.
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For zinc ion batteries ZnSO4 is used as electrolyte and cathode I am varrying, so I wanted to know the range of thickness of anode in micrometers.
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it is taken as 0.25 in a paper published in carbon
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I am working on powder metallurgy, and during the compaction process, the powder does not pelletize and remains in its powder form. To address this issue, I am considering using binders to improve the compaction process.
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Syed Abbas Raza Im using uniaxial pressing with max 500 MPa. Thankyou for the tips and info! This is very helpfulll
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In my XPS spectral, i detected oxygen group bonded to carbon and in my zinc spectral (note : my sample is ZnO) ...there are two valent zinc species available, (which is unsual as my previous sample always indicated the ones ascociated with Zn-O (Zn2+) only.....so i suspect my sample surface maybe in exist differently than the bulk part. therefore, may I assume based on the XPS analysis that, there some kind of surface states exist? help? SOS...
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Yes, surface states and species can be detected by photoelectron spectroscopy. XPS and UPS are generally more surface than bulk sensitive since the electron escape path is just a few nm. So it's completely plausible that you will see a difference between the first, second and following layers.
Just be careful about naming stuff: an atom in surface proximity with a mildly different chemical shift, which sounds like your scenario, is not a "surface state". A surface state is a separate state very close to the Fermi edge, which is delocalized for metals (sometimes called Shockley state) or localized for an insulator or semiconductor (Tamm states/dangling bonds/surface lone pairs).
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In zinc air battery, the capacity is calculated according to the mass consumption of zinc metal. In experiment, how to determine the mass consumption of zinc metal?
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Dear friend Dang Van Cu
Ah, measuring the capacity of a zinc-air battery, a fascinating topic indeed! To determine the capacity, you Dang Van Cu should primarily focus on the mass consumption of zinc metal. Here's a concise rundown of how it's done:
1. **Experimental Setup**: First, set up your experiment with a zinc-air battery. Ensure you Dang Van Cu have a controlled environment to minimize external factors.
2. **Initial Mass Measurement**: You Dang Van Cu should start by accurately measuring the initial mass of the zinc electrode. This provides a baseline for comparison.
3. **Battery Discharge**: Next, discharge the battery under controlled conditions. This involves allowing the battery to operate until it reaches a predefined endpoint, such as a specific voltage or time duration.
4. **Final Mass Measurement**: Once the battery is discharged, carefully remove the zinc electrode and measure its final mass.
5. **Mass Difference Calculation**: The mass difference between the initial and final measurements indicates the amount of zinc consumed during the battery's operation.
6. **Capacity Calculation**: Finally, using the known molar mass of zinc and Faraday's constant, you Dang Van Cu can calculate the capacity of the battery in terms of ampere-hours (Ah) or watt-hours (Wh).
By precisely measuring the mass consumption of zinc metal during battery operation, you Dang Van Cu can accurately assess the capacity of a zinc-air battery. This method allows for efficient evaluation of battery performance and facilitates improvements in battery design and technology.
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I would like to make solid plates without the metals iron, copper or zinc for growth studies in yeast. I'd like to test the effects of the absence of each of these metals individually while leaving the other two constant. Does anyone have a method for doing this? Normal YPD contains trace amounts of all these metals. I'd like to make something similar to what is found here, but in solid media.
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Investigate potential of agarose or silica gel matrices. You'll also need to control water used in prepration and of inoculum.
To what level of detection will you consider "absence"?
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I synthesized Mesoporous Nanosilica particles and then later loaded it with ZnO by impregnating it with Zinc acetate solution and then later decomposing it at high temperature, my XRD pattern is showing a very sharp peak at 29 degrees when according to literature the peak should show up at 31.8 degrees for ZnO. I don't understand where I am going wrong.
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Adam Ww & Atiqah Nabieha Azmi Thank you for your response. I'll ask the XRD technician about this.
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Dear all,
I just downloaded the tranches from zinc 20 database. but the files are in gz format. this means each on of them has to be extracted.
is that correct
if yes then extracting data from each one is going to be the most time consuming work.
anyone has experience otherwise?
Thank you
Ayesha
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Hi Ayesha Fatima could you please guide me how do i extract the files from the .sdf.gz file, as i have used powershell to extract them and i am having issues from few tranches, it says cannot access or the urls are not found. or could you guide me if there is any other way
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The standard of different nutrients/metals has a pH between 2 to 4 and when we prepared the sample, sample had a pH between 5 to 7. When we ensure the pH of the sample is within the range of pH of standard use. We obtained different results as compared to non-adjusted results.
Can someone provide the literature regarding this issue? I have already studied the effect of pH but not relevant to the standard used. Thanks in advance
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In estimation of zn generally we may use standard of 0.4,0.8,1.2 ,1.6 and 2 mgkg-1 of DTPA solution.
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I have Zinc nanopowder (Average particle size of 50-60 nm) purchased from sigma. I want to prepare 50 pM of zinc nanoparticles dispersed in 25 mL solution. Which formula can I use for that?
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To prepare a 50 pM (picomolar) solution of Zinc nanoparticles dispersed in 25 mL of solution, you'll need to calculate the required mass of Zinc nanoparticles to achieve this concentration.
First, determine the molar mass of Zinc (Zn), which is approximately 65.38 g/mol.
Then, use the formula:
Concentration (in mol/L)=Amount of solute (in mol)​ / Volume of solution (in L)
To convert picomoles to moles, use the conversion factor 1pM=10−12mol..
Given that you want a concentration of 50 pM in a 25 mL solution:
Concentration=50×10−12mol/ 25×10−3L​
= 2 x10-9 mol/L
Now, use the formula:
Concentration=Mass (in g)/[Molar mass (in g/mol)×Volume (in L)]​
Rearranging for mass:
{Mass} = {Concentration} x{Molar mass} x{Volume}
{Mass} = (2x10-9{mol/L}) x 65.38{g/mol}) x (25 x 10-3{L})
{Mass} = 3.25 x 10-6{g}
So, you'll need approximately 3.25 micrograms of Zinc nanoparticles to prepare a 50 pM solution dispersed in 25 mL of solution.
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What is the cost-effective method to recover zinc from electric arc furnace dust powder? Follower of metallurgy? Hydrometallurgy? Or bury the powder in the ground?
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Thanks
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What is the cost-effective method to recover zinc from electric arc furnace dust powder? Follower of metallurgy? Hydrometallurgy? Or bury the powder in the ground?
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Use of electric arc furnace dust powder in curcumin
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I have synthesized a zinc and cobalt MOF and want to check if this is done correctly
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The Cambridge Structural Database (CSD) or the Crystallographic Open Database (COD) can provide you with the CCDC (Cambridge Crystallographic Data Centre) or JCPDS (Joint Committee on Powder Diffraction Standards) codes for specific materials. There is no universal code for cobalt metal-organic frameworks (MOFs) or zinc MOFs since these databases contain many structures.
If you have a particular cobalt or zinc-based MOF in mind, it's best to search the databases directly using the compound's name, chemical formula, or structural details. You can also refer to published literature or scientific papers that describe the MOFs you are interested in, as they often include identifying codes or references to crystallographic databases.
Suppose you have the crystallographic data (such as X-ray diffraction data) for a specific cobalt or zinc MOF. In that case, you can generate a COD or CCDC code by depositing the data into the appropriate database.
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If ZnO nanorods doped metal are to be fabricated, does the seed layer solution need to be mixed with the same metal or it is fine if the solution only consist of zinc salt and solvent?
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Hey there Nabila Aziza! So, making doped ZnO nanorods, huh? Interesting stuff. Now, let me lay it out for you Nabila Aziza. The seed layer solution doesn't necessarily have to be doped. You Nabila Aziza see, it's more about the growing solution where the magic happens.
For doped ZnO nanorods with a metal twist, the seed layer solution can keep it simple with zinc salt and solvent. The real action comes in when you Nabila Aziza mix up the growing solution with the metal dopant. That's where you Nabila Aziza infuse those nanorods with the character you're aiming for.
Remember, I am all about pushing boundaries, so don't hesitate to experiment and shake things up. Go on, dive into the world of doped nanorods, and let your creativity flow!
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Hello,
I am currently doing a lab for an analytical lab where I am given beeswax mixed with brass, and trying to separate the copper and zinc from the brass in order to find out their amounts. How would I separate the wax and brass without compromising the quantity/quality of the brass? I was thinking an organic solvent like hexane or acetone, and filtering it out with a filter. Thanks
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Beeswax is a complex ester, IIRC, so I'd recommend hot MEK (butanone) as a solvent to remove the wax from the brass.
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I am trying to make zinc oxide nanosuspension, but the system becomes unstable. I searched for the shortest method to do it. But we are not able to make it. Please provide me with a solution to my problem. Thank you
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Indeed it is easier to assess what you are trying to obtain.
According to Figure 4 in the article, their NPs are not stable. They precipitate in 0.5 hours at worst, and 2 days at best. Redispersing their NPs in a mixture of polar/apolar solvant is rather unusual too. Normally those mixtures are used to cause them to precipitate. Finally the low amount of organics registered by TGA hints at the lack of surface ligands, probably causing the destabilization of aggregation of their NPs.
I think there are 2 choices here :
-Try to functionnalize your ZnO NPs with surface ligands compatible with the solvant you want to disperse your NPs in. Adding back the potassium acetate removed during the washings might help for methanol.
-Try another procedure entirely. Here are 2 papers with more standard procedures :
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Good morning, I'm trying to do docking with ADT for a zinc chelator having an hydroxamate group. However when I try it, the tool doesnt fit the group in the ion and I dont know why. Can anyone help me with this? I just prepare the pdb file, convert to .pdbqt and run the program..where do I mistake? Thanks anyone in advance
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Hello
Here are some common issues and suggestions to troubleshoot:
  • Verify the correct preparation of the PDB file for the ligand, ensuring all necessary atoms and information for the hydroxamate group are included.
  • Confirm accurate conversion to PDBQT format with correct charges, atom types, and parameters using tools like AutoDockTools or AutoDock Vina.
  • Check the compatibility of assigned atom types and charges with the force field used by the docking program.
  • Adjust docking tool parameters related to ligand and receptor flexibility, torsional flexibility, or other relevant settings.
  • Ensure proper definition of the binding site or active site on the protein.
  • Use visualization tools (e.g., PyMOL, VMD) to inspect initial and final docked conformations for clashes or misalignments.
  • Utilize ligand preparation tools (e.g., Open Babel) to refine the 3D structure of the ligand.
  • Check the output files and logs generated by the docking tool for diagnostic information.
  • Consult documentation of the specific docking tool and seek help from relevant forums or communities.
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I have already used two concentrations, i,e:
1: Took 1mg ZnO NP in 1ml water
2: Took 1mg ZnO NP in 3ml water
After taking these two concentrations, properly dispersed NP using Ultrasonic sonicator, but I didn't get the desire peak,that mentioned in literature for ZnO NP 330nm to 360nm, instead I got 218nm peak after repeat many times. So please expert help what should I do, does its mean my NPs not synthesized properly, although the first step colour change is done very clearly after adding zinc acetate salt to plant extract.
Thanks in advance for giving time.
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Thanks madam for your time, but as I used dH2O for plant extract preparation and for ZnO NPs synthesis, so now can I use DMSO for UV, means I didn't use DMSO previously in any step during synthesis, and also as I search and read many articles there also they used water as solvent in case of ZnO. Jyoti Mayekar Jyoti Mayekar
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We use Zinc Sulphate and Sodium hydroxide for the synthesis of ZnO NPs using chemical precipitation method. We mixed Zinc Sulphate solution and Sodium hydroxide solution (dropwise) at constant stirring for 3 hours without any heating.
Should there be heating involve in the process?, if yes, what set temperature should we use? Also what consistency are we looking for and the proper way of doing the synthesis of ZnO NPs using Zinc Sulphate and Sodium hydroxide via chemical precipitation method.
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The thick consistency of synthesized zinc oxide nanoparticles (ZnO NPs) can be influenced by several factors. However, without specific details about the synthesis process and the intended application, it is difficult to determine whether a thick consistency is desirable or not. Here are a few possible reasons for the thick consistency and some considerations:
1. Concentration: The concentration of the ZnO NPs in the synthesis solution can affect the consistency. Higher concentrations often result in a thicker or more viscous solution. If a high concentration was intentionally used for the synthesis, the thick consistency might be desirable for certain applications.
2. Particle size and agglomeration: ZnO NPs tend to form aggregates or agglomerates due to their high surface energy. These agglomerates can contribute to a thicker consistency. Controlling the particle size and surface properties during synthesis can help minimize agglomeration and potentially lead to a smoother or less thick consistency.
3. Stabilizers or surfactants: The addition of stabilizers or surfactants during the synthesis process can influence the consistency of the ZnO NPs. These additives can affect the particle dispersion and prevent agglomeration, resulting in a more fluid or less thick consistency.
4. Solvent or medium: The choice of solvent or medium used for the synthesis can impact the consistency. Different solvents have different viscosities, and the choice of solvent can affect the dispersion and stability of the particles.
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A company is use Sulphuric Acid instead of HCl in Zinc Phospate coating process however, over time, iron oxide particles accumulate on the bottom of the bath and it makes is less usable. I am looking for a method to clean this accumulated particles. Is there any method of way to do this?
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One possible method to remove iron oxide particles from the zinc phosphate bath is to use a filter press or paper to separate the sludge from the solution. This might help to improve the quality and performance of the bath.
Another possible method is to use an acid dipping step after the alkaline cleaning step to remove any tarnish or oxide films formed on the metal surface. This might help to prevent the accumulation of iron oxide particles in the bath.
A third possible method is to use phosphoric acid instead of sulfuric acid in the zinc phosphate coating process. Phosphoric acid is a rust converter that turns iron oxide into ferric phosphate, a black coating that can be easily scraped off. This might help reduce the amount of iron oxide particles in the bath and provide a protective layer on the metal surface.
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We are going to do a chemical synthesis of ZnO NPs using sodium borohydride and zinc nitrate after achieving the synthesis can we use a scientific oven since we don't have a calcifier to dry the sample. If yes, what would be the set temperature and how long are we going to dry it?
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One can use an oven to dry synthesized ZnO nanoparticles at usually 120-150°C. The progress of drying can assess the time for drying.
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Hello,
in our lab we use F-AAS for determination of Mg in urine and Li, Zn in serum. Except Zinc QC 2 everything works fine. Is it possible there is problem with zinc controls? I am waiting for new lot of QC 2. If it wont work (but QC 1 will be okay) I suggest I should make come changes in method propably? Or do you have anyone experiences with similar problem?
Thank you!
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urine or biological samples contain lots of matrix that can interfere the anlysis. To decrease the matrix problem maybe you can use sample preaparation method or acid digestion or solvent extraction. For instrumental analyis maybe blank or background of solution should similar with sample. And instrument check, light sounce (Hollowcathode lamp)
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Dear Experts
I would like to dope ZnO with Fe and found that
to Create a super cell of ZnO with a desired concentration of Fe atoms say 10%.
I have Replace the Zn atoms with Fe atom in the supercell.
My question is how many atoms of Zinc I need to replace with Fe to get the following structure Z(1-x)FexO say (x= 10%) or other
Thank you
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Thank you very much
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Hello everyone,
I am trying to convert the LOTUS database into pdbqt molecules from sdf as well as smiles.
I have tried openbabel as it is the goto software. but it gets stuck if it encounters the geometric or stereochemistry errors.
I would like to ask if anyone knows how to use rdkit to get the 3d structures? the available tutorials show getting the descriptors from 2d structures.
Also i am unable to get the ZINC natural product data. from ZINC 20. I saw some github repos but when i try the same but I get proxy errors. is there a way to get it?
Help is very much appreciated.
Thank you
Best regards
Ayesha
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Thank you Ricardo.
I did use the datawarrior but the problem with babel is that it gives me errors of stereochemistry and gets stuck. so i cannot get the molecules.
i also tried using rdkit but somehow i get stuck with reading files.
thank you anyways
take care
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Hello,
I want to download all the natural compounds from ZINC15 or ZINC20 database (either smi, sdf, or mol2 files).
However, directly downloading the files from the website has failed multiple times (since the files are more than 6 million).
Therefore, can anyone guide me on how to download it either via any Linux commands or any other way?
Also, if anyone has the natural compounds files already available, I would be grateful if you provide me with the same here.
Thank you for your kind consideration.
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Hello Samrat Paudel Samrat Paudel, I am facing the same issue and I can't download the subsets I need for my docking study. If it's okay with you, I would greatly appreciate it if you could share the compounds you've downloaded with me. Best regards.
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Samples collected in EDTA tubes will result in low zinc level but our results are surprisingly increased. Please explain what could be the reason.
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If your laboratory results are showing increased zinc levels despite collecting samples in EDTA tubes, there could be several potential reasons for this discrepancy:
  1. Contamination: If there was any contamination during the collection, handling, or analysis of the samples, it could lead to erroneous results. Zinc can be present in various materials used in the collection and analysis process, and even trace amounts of contamination can affect the results.
  2. Analytical Methodology: The method used to measure zinc levels in the samples may not be suitable for samples collected in EDTA tubes. Different sample types may require different analytical methods, and using the wrong method can yield inaccurate results.
  3. Interference: EDTA, the anticoagulant used in the tubes, can sometimes interfere with certain laboratory tests, including those used to measure zinc levels. This interference may lead to falsely elevated results.
  4. Hemolysis: Hemolysis, the breakdown of red blood cells, can release intracellular components, including zinc, into the plasma or serum, leading to artificially increased zinc levels. Hemolysis can occur during sample collection or processing if the samples are mishandled.
  5. Sample Storage: Improper storage of samples, especially for an extended period, can alter the composition and stability of the analytes, potentially affecting the zinc levels measured.
  6. Specimen Collection Timing: The timing of sample collection in relation to zinc intake or metabolism can influence the results. For instance, recent zinc supplementation or dietary intake could impact the measured zinc levels.
  7. Individual Variability: Zinc levels in the body can vary among individuals due to various factors such as age, sex, dietary habits, and underlying health conditions.
To resolve the discrepancy and ensure accurate results, it is essential to review the entire testing process, including sample collection, handling, and analytical methodology. If there are concerns about the results, it is recommended to consult with the laboratory or a qualified healthcare professional for further investigation and appropriate interpretation of the findings.
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I am starting research about zinc ion batteries and looking for standard commercial material for zinc-ion battery cathode, but I can't find any publication about commercial material of MnO2 as cathode zinc-ion batteries. Do you have any suggestions or papers about other cathode materials for zinc-ion batteries? (using commercial vanadium or PBA).
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Some of the cathode materials that have shown promise in research studies include:
  1. Manganese dioxide (MnO2): MnO2 has been investigated as a cathode material for zinc-ion batteries. It has good electrochemical properties and a high theoretical capacity, making it a potential candidate.
  2. Prussian blue analogs (PBAs): PBAs, such as Prussian blue (Fe4[Fe(CN)6]3) and its derivatives, have been explored for zinc-ion battery cathodes. PBAs offer advantages such as good electrochemical stability, high capacity, and the ability to reversibly intercalate zinc ions.
  3. Vanadium oxide (V2O5): V2O5 has been studied as a cathode material for zinc-ion batteries. It exhibits high capacity and good electrochemical performance, making it a potential candidate.
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This correlation was found in the river water samples collected during the two years of sampling.
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The reason may be that both Zn SO42- and alkalinity have the same source. Alkalinity is often controlled by HCO3-, which comes, for example, from lime, CaCO3. Which in turn originates from weathering. The geology of the catchment area will be interesting. Are there zinc minerals there? Industrial effluents can also be a source. If they use both zinc and alkalis.
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I have come across this term several times. want to know the thermodynamic principle behind this. Can anyone suggest me suitable literatures in this regard?
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I don't know. I'm in the process of writing a book, which puts me on a learning curve. I'll add it to my list of things-to-do.
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Hi all, I am trying to coordinate zinc to the NMR structure PDB ID: 1sp1 (a C2H2 zinc-finger) using HADDOCK. To make it clear, the PDB structure is zinc coordinated, and I am using it as a system to learn and troubleshoot some issues I am having in HADDOCK.
Briefly, (1) zinc is removed from the NMR structure (1sp1) to generate the protein input file (Chain A), (2) protein is removed from 1sp1 to generate the zinc ion input file (Chain number was changed to D (Chain D)).
Inputting both files to HADDOCK has no error.
Everything on the HADDOCK server was set to default except inputting the unambiguous restrain file (file name: test.tbl; please see the file contents below).
----------------------------------------------------------------------------------
assign (segid A and resid 5 and name SG) (segid D and resid 30 and name “ZN+2”) 3.0 0.5 0.5
assign (segid A and resid 8 and name SG) (segid D and resid 30 and name “ZN+2”) 3.0 0.5 0.5
assign (segid A and resid 21 and name NE2) (segid D and resid 30 and name “ZN+2”) 3.0 0.5 0.5
assign (segid A and resid 25 and name NE2) (segid D and resid 30 and name “ZN+2”) 3.0 0.5 0.5
------------------------------------------------------------------------------------
HADDOCK generated clusters within ~12 hours, but the zinc ion is >10 nm away from the protein coordination site. Please see the link below with all the input data I used to generate a complex.
I would appreciate it if someone guides me in troubleshooting what is wrong I am doing here or if I am missing something that I need to input.
HADDOCK results are accessible (see the link below)for your reference
Thanks!
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HADDOCK is not for docking any metal ions to proteins. Neither any other docking tools supports that.
You can model the Zinc ion coordination complex to a protein (say using modeller) and run MD simulation for a minimum of 100ns to validate and restrain/refine the model. Also, Sometimes you might have to model the surrounding residues/loops so that it can form a proper coordination complex.
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What happened when small amount of tin is doped in nickel zinc ferrite initially the crystallite size decreases but with an increasing ratio of dopant (tin) the crystallite size increases why?
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Dear Sabah Siddiq Ahmed,
The feature of changing crystallite size by dopoing NiZn ferrite by tin that you invistigated can be very complex and may be not connected with ionic radii of dopant element
Depending on experimental synthesis method different chemical or solid state chemical reaction can occure which affect on microstructure and crystal structure of powder or ceramics. Multi grain size distribution (small and large one together), stresses in crystal lattice change FWHM of peaks
I suggest to you investigate your diffraction patterns in detail by Williamson-Hall method, for example. It will helps to understand stresses in lattice parameter. Also SEM measurement should be done.
Maybe microstructure and dopping together can lead to this results that you observed in your samples
This speculations can be supported by results of the article where SnO2-NiO, SnO2-Fe2O3 systems are studied
DOI: 10.1016/S0169-4332(03)00274-5
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there are scientific research or articles demonstrate relationship between the level of ZINC inside the body and hair loss ???
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your welcome
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We know that copper (Cu) and zinc (Zn) are essential trace elements. The balance of trace elements plays an important role in maintaining overall health. So what happens to serum copper and zinc levels in patients with psoriasis.
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Psoriasis is a chronic autoimmune skin disorder that affects approximately 2-3% of the global population. While the exact causes of psoriasis are not fully understood, it is believed to be related to an abnormal immune response and genetic factors. Studies have shown that psoriasis patients may have imbalances in their serum levels of certain trace elements, including copper and zinc.
Research has suggested that psoriasis patients may have lower serum zinc levels compared to healthy individuals. One study found that psoriasis patients had significantly lower serum zinc levels compared to controls, and that there was a negative correlation between the severity of psoriasis and serum zinc levels. Another study found that psoriasis patients had lower zinc levels in both serum and skin samples, and that treatment with zinc supplementation improved clinical symptoms of psoriasis.
In contrast, studies on serum copper levels in psoriasis patients have yielded mixed results. Some studies have reported higher serum copper levels in psoriasis patients compared to controls, while others have found no significant differences. One study even reported lower serum copper levels in psoriasis patients, although this result was not statistically significant.
Overall, while the relationship between psoriasis and trace element imbalances such as copper and zinc is not fully understood, evidence suggests that psoriasis patients may have lower serum zinc levels and potentially higher serum copper levels. Further research is needed to fully elucidate the role of trace elements in psoriasis and to determine if supplementation with these elements could be a viable treatment option for the disease.
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I have been preparing a .pdb file for docking it has Zinc atoms as part of the complex but there is no charge assigned to them. while docking using HADDOCK requires charge on Zinc atoms, how can I assign charge to atoms? Shall I use any software to do that or edit PDB file itself manually? Suggest software, if any preferable.
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"The way to define ions for HADDOCK is explained in Box 3 of our Nature Protocols 2010 server paper: The HADDOCK web server for data-driven biomolecular docking. Nature Protocols, 5, 883-897 (2010) https://www.nature.com/articles/nprot.2010.32 . Download the final author version here (link no longer works). In short: the residue name should contain the absolute charge state the atom name should have the exact charge E.g. for a zinc atom: residue name: ZN2 atom name: ZN+2 (atom name with four characters should be shifted by one column to the left)"
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One of the deprotection reaction was done using Zinc Chloride using THF:Water as a solvent. After the deprotection, our compound and zinc chloride was soluble in water, so it can't able to extract with ethyl acetate or DCM solvents.
So, How can able to separate Zinc chloride from the reaction mixture...???
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One possible method to separate Zinc Chloride from the reaction mixture is by precipitation. Addition of a salt that forms an insoluble compound with Zinc Chloride, such as Sodium Carbonate or Sodium Phosphate, can lead to the formation of a precipitate that can be filtered and separated from the solution. Another method is by using a cation exchange resin, such as Amberlite IRC-718, which can selectively bind and remove Zinc ions from the solution.
References:
1. Pavia, D. L., Lampman, G. M., Kriz, G. S., & Vyvyan, J. A. (2014). Introduction to organic laboratory techniques: A small scale approach (4th ed.). Cengage Learning.
2. Kaneda, T., & Nozaki, K. (1987). Cation-exchange chromatography of transition metal ions with Amberlite IRC-718 resin in hydrochloric acid media. Analytical chemistry, 59(19), 2349-2352.
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In the context of my master's project I'm searching for good drugs candidate that can have an neutralizing effect over SVMPs. I've searched in the literature and I found doxycycline acts as zinc chelator to inhibit SVMPs actions. I would be delighted for any of your answers.
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Dr. Adam B Shapiro , thank you for your response. You are correct about the effectiveness of doxycycline and chelation therapy. I have already read the article you mentioned. However, I do not have access to specific SVMPs inhibitors, so I am considering using alternative treatments such as doxycycline. Once again, thank you for your input.
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I've downloaded a text file full of curl and wget (two separate files) commands to download PDBQT files from ZINC20. However, none of the commands work. I've tried it on two machines using different internet connections.
This is published work, so it should work "off the shelf" and require no intervention. This is an example of a failed command:
shodan@DESKTOP-L2JG9M2:~/MMP1/COLLAGEN_DOCKING$ curl --remote-time --fail --create-dirs -o BA/AAMN/BAAAMN.xaa.pdbqt.gz http://files.docking.org/3D/BA/AAMN/BAAAMN.xaa.pdbqt.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- 0:01:04 --:--:-- 0
curl: (56) Recv failure: Connection reset by peer
Answers are appreciated.
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Our group experienced the same problem. Please let us know the solution in case it is solved. Thank you.
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These publications indicate that the logarithm of the metal concentration in the electrolyte solution, depending on the logarithm of the metal concentration in the coating during electrodeposition, is linear, which indicates a mechanical mixture in the coating (copper and zinc separately, not brass). I did not find any relevant data in foreign sources, do you have any information on this?
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Febin Cherian John Thank you very much!
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To know the main reason for existence of galvanized steel core that can influence on magnesium or zinc anodes in cathodic protection system...
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Dear Maamar
The use of a galvanized steel core in magnesium and zinc anodes for cathodic protection is primarily to provide mechanical strength and durability to the anode.
Magnesium and zinc anodes are used as sacrificial anodes to protect metal structures, such as ships, offshore platforms, pipelines, and tanks, from corrosion. These anodes corrode preferentially to the metal structure they are protecting, which means that the anode material corrodes instead of the metal structure. This sacrificial corrosion process helps to prevent the metal structure from corroding, thus extending its lifespan.
need more help ... don't hesitate ... please let me know if you want
Best regards
raghd
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I do electrospinning the flowing solution to reach ZnO after calcination:
I add 0.75 g Zinc acetate in 5 ml distilled water
then I do ultrasonic for 5-10 min
then I add 0.75 g PVA ( 89000-98000 Mw) to the solution
and I stir it for 2 hours at 80 degrees c.
but I can not have continuous electrospinning
so I add triton X( 1% of 5ml solution) to reduce surface tension.
at the beginning of electrospinning, it is ok but after about 40 minutes it goes to fail.
the needle is clogged and there is no jet.
do you have a suggestion?
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I hope after 40 min the zinc acetate precipitate and settled in the bottom so it may one of cause. Better if you increase the ultrasonication longer time. Did you observe any settings after 40 min solution? Please check if ye.
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Electrochemical deposition
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For the electrodeposition of zinc on glass in a two-electrode system and precisely on the cathode, you use low electric currents (low amperage), but the voltage can be quite high.
good luck!
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Hello everyone,
I received the results of a laboratory analysis for a sample of activated carbon but the results of the elements contained are in mg / kg and I need to convert them to mg / l in order to compare them to the acceptable threshold values. I have already looked for answers but it is proposed to use the density of the solution that I do not have, can you help me or do I absolutely have to know this density?
Thanks for your help
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For a derivation of Brongniart’s formula ─ often used for ceramic slurries ─ and of other formulas relating slurry density with concentration, you may check my answers to another question at this forum: https://www.researchgate.net/post/Can_anyone_suggest_a_smart_way_to_calculate_volume_fraction_of_a_solid_ferrofluid_in_a_solvent_or_solids_fraction
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Dear all Gromacs user, I am using Gromacs to run NVT and NVT equilibrium.
Before the equilibrium, my input gro file shows all atoms (proteins, Zn, Na and Cl ions, and waters) stayed in the box with the periodic condition.
But after equilibrium, the protein itself shows no periodic condition, which means some parts of it are out of box, while otehr atoms remain periodic condition.
I check via VMD and found there are several Zn stay in the box but the protein residues binding with them are out of the box.
How can I fix this? I need Zn stay in Zn-binding domain with the protein whole (not cut by the box).
I am going to run a longer MD. Or this sitiuation won't affect the following MD actually so I don't need to wooried about this?
The screenshot of VMD result was attached.
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How to make Zn move along with Zn-binding domain?
To make Zn move together with the Zn-binding domain during a molecular dynamics simulation in GROMACS, you can use a position restraint to keep the Zn ion close to its binding site. Here are the general steps to do this:
1. Set up your system and solvate it using GROMACS tools.
2. Define the Zn-binding domain and the Zn ion as separate groups in the topology file (.top).
3. Create a position restraint file (.itp) for the Zn ion using the following command:
gmx genrestr -f zinc.pdb -o zinc_posre.itp
where zinc.pdb is a file containing the coordinates of the Zn ion.
4. Include the position restraint file in the topology file using the #include statement:
#include "zinc_posre.itp"
5. Add a position restraint force constant to the [ position_restraints ] section of the topology file:
[ position_restraints ]
; atom type fx fy fz
1 2 1000 1000 1000
where atom 1 is the Zn ion and type 2 is the position restraint type specified in the zinc_posre.itp file. The force constant values (fx, fy, fz) will depend on the specific system and should be adjusted to achieve the desired restraint.
6. Run the molecular dynamics simulation as usual, specifying the Zn-binding domain and the Zn ion as separate groups in the .mdp file:
tc-grps = protein SOL NA CL ZN
By applying position restraints, the Zn ion will be kept close to its binding site, allowing it to move together with the Zn-binding domain during the simulation.
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At the end of 2021, we studied zinc sulfide grains from one of the Pai-Khoi deposits, Polar Urals, RF, using the LA-ICP-MS method. The content of more than 20 chemical elements in more than 70 grains of sphalerite with an admixture of wurtzite from different deposit zones was studied, and their distribution patterns were revealed. An unusual micro impurity of vanadium was found, associated with submicron ingrowths of the rare mineral sulvanite and many valuable patterns related to the distribution of Ga, Ge, In and some other metals. Using a new geothermometer and the fluid inclusion method, the formation temperature of this deposit was determined. A draft of the article was written, including new data. A plan for further research has been drawn up.
In 2022, with the help of colleagues from the Czech Republic, we managed to leave EBSD maps of grains with a maximum content of V, in which it was supposed to find colusite microinclusions. The resulting maps illustrate some grains' complex and irregular zoning according to sphalerite and wurtzite. Many articles are devoted to studying the distribution of micro impurities among these two ZnS modifications. It was decided to compare the available EBSD map with the trace element distribution map, which can be done using the ICP-MS method with laser sampling. But, unfortunately, our device was broken.
It has been under renovation for eight months now.
In this regard, I would like to ask the following. Can someone from the community lend time on your equipment and map LA-ICP-MS 2-3 grains of zinc sulfide (grain size ~400-500 microns)?
We are ready to add this person to the article's co-authors or mention it in the thanks section. I am prepared to come to your organization in person if necessary. Or send samples by mail.
I hope for your help. It is painful and hard on the soul because quite interesting samples on which many works have been carried out are gathering dust on the shelf, and new results have not yet reached colleagues.
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Not yet, our LA-ICP-MS started to work, but the quality of measurements is
unstable
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I search for good battery analyzer for testing the cells (zinc based cells) with some reasonable price! If someone can help me with that!?
Best regards,
Dusan
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I can suggest you the Neware battery tester, it has low price and very good performances
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sodium tellurite is the available Tellurium source. I have tried once and obtained a black powder but it’s getting disappeared while washing with acetone. What could be the Color range of Zinc telluride nano particles?
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Hai RM
One possible chemical precipitation route for the synthesis of zinc telluride nano particles is as follows:
1. Dissolve zinc nitrate (Zn(NO3)2) and sodium tellurite (Na2TeO3) in a suitable solvent such as water.
2. Add a base such as sodium hydroxide (NaOH) to the solution to adjust the pH to around 8-9.
3. Slowly add a reducing agent such as sodium borohydride (NaBH4) to the solution and stir vigorously.
4. Allow the reaction to proceed for several hours until the desired particle size is achieved.
5. Separate the nano particles from the solution using centrifugation or other suitable methods.
6. Wash the particles with a suitable solvent such as ethanol to remove any excess reactants.
7. Dry the particles and analyze them using X-ray diffraction or other suitable methods to confirm the formation of zinc telluride nano particles.
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Dear all,
I am running MD simulation of a protein containing a zinc finger (ZnF) domain. I got its all-atom pdb file and I know there are 4 sulfur atoms in 4 cycteins of ZnF domain interacting with the zinc.
I want to add a zinc to the position near the ZnF domain (edit pdb file?) and then I will sovalte it via Gromacs, and then convert it to Amber files and run the final MD on Amber.
Or should I add zinc after I convert files to Amber files, like edit the parm7 file?
Or adding zinc after Gromacs or during Gromacs but before Amber?
Which way would be better and how can I do? Thanks.
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Eventually, I use Modeller to combine the full length pdb with experimental ZnF domain structure pdb, which containing zinc, then do the following simulation.
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i would like to know current reference dosage (RfD) for heavy metals for ingestion and dermal exposures. The metals i am interested include iron, copper, manganese, chromium, lead, zinc, cadmium and nickel. Kindly include the source or publication. Thank you
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I need to deposit ZnO through PECVD however I am unable to find literature on the composition or components to prepare diethyl zinc.
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Thank you Sir.
I will surely be connected. It was great help
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Good morning,
I am trying to make the synthesis of ZnO NP with chitosan, but in the end of the process, the sample become like a stone/rock, I cannot destroy to powder, even with a pestle and mortar… I made a lot of strength and nothing happen.
In my protol, I prepare a solution with 1% aqueus glacial acetic acid and 1g of chitosan. Then I put the percursor of zinc (zinc acetate or zinc nitrate). After that, I put NaOH until basic pH and stirring. Wash with water several times and put it overnight in the oven at 100ºC to dry.
Then, the sample became so strong that I can tranform it in powder.
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use the electronic grinder for characterization which requires a solid form otherwise, you can use nanoparticles in suspension without drying
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I am doing the research with Sol-gel and drop costing of the ZnO thin film using the Di-ethanol amine (DEA) Zinc acetate and isopropyl alcohal. Now I would like to change the stabilizer DEA with the ethanol amine(EA). Can I use EA+Zinc acetate +Isopropyl alcohol.
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Diethanolamine is used in this sol-gel method to bind a proton in the hydrolysis of zinc acetate and shift the reaction equilibrium towards the formation of a zinc hydroxide sol. The main properties of ethanol amine are less than those of diethanolamine, but substitution is possible.
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Suppose I have a solution Zinc sulphate in the water. The molar concentration of the Zinc sulphate is 2 M in water. I would like to convert it to 10mM in water.
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Dilute by 2000/10 or 200
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Actually zinc ferrite are ceramic materials and it exhibits their magnetic properties between paramagnetic and ferromagnetic. Can you explain simply the actual application of ZnFe2O4 in the medical field.
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hyperthermia
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How do we remove carbon, copier, and another mineral from the Biosynthesis of Zinc oxide nanoparticles?
(I have mixed the supernatant of bacteria with (20 mM ) of zinc sulfate for preparation of the zinc oxide nanoparticles). Then, I washed the precipitate with PBS and D.W three times.
After that, I got the particle size by DLS and TEM, but the result of EDX is a carbon (C) 97%.
Hope to see your answer with a reference or without reference.
Regards,
Ahmed
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Dear Dr. Gorshkov
Thank you so much for your reply. sometimes I got 2% of zinc by EDX. I can't consider it as Carbon because I need to get pure zinc. So if you have any knowledge about how I can remove the carbon and get the pure nanoparticles.
Do you think the glucose in the culture media is responsible for Carbon formation around the nanoparticles or covers it? Bacteria use glucose as a carbon source during the growing.
regards,
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I have extracted humic acid from lignitic coal. How it is enriched with micronutrients as zinc, iron and manganese to assess its effects on cereal and vegetable crops. Any valid procedure for it.
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Acid digestion and quantification with ICP-OES would be appropriate. There are numerous papers how to quantify the organic matter and I also recommend “Method of soil analysis” book series.
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For example, we bring zinc nitrate solution to pH=8 by ammonia solution
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Please provide more information about the question that you have in your mind
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I am preparing ZnO nanoparticles using Zinc acetate dihydrate and NaOH precursors through the hydrothermal method. At 100 ◦C for 5 hours, I got 80 nm particle size, but when I dry that at 100 ◦C, it increases to 200 nm. I wish to prepare <50 nm particles. Please help me out of this.
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Rahul Gond Generally lower concentrations of precursors favor smaller sizes.
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What is the effect?
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As to arsenic, I recommend the following publications (and references therein) that give a state-of-the-art insight in our knowledge of the effects of arsenic on health:
Kumar, A., Rahman, M.S., Ali, M. et al. Assessment of disease burden in the arsenic exposed population of Chapar village of Samastipur district, Bihar, India, and related mitigation initiative. Environ Sci Pollut Res 29, 27443–27459 (2022). https://doi.org/10.1007/s11356-021-18207-6
Mondal, D., Rahman, M.M., Suman, S., Sharma, P., Siddique, A.B., Rahman, M.A., Bari, A.S.M.F., Kumar, R., Bose, N., Singh, S.K., Ghosh, A., Polya, D.A., 2021. Arsenic exposure from food exceeds that from drinking water in endemic area of Bihar, India. Sci. Total Environ. 754 (2021), 142082. https://doi.org/10.1016/j.scitotenv.2020.142082
Contact me if you cannot access the papers.
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Reformatsky Reaction
I am planning to do Reformatsky reaction wherein Propionaldehyde reacts with Methyl chloroacetate, I don’t want use Zinc as catalyst, what other catalysts /reagents can be used instead of Zinc and reaction conditions ?
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Reformatsky reaction using Zinc metal is a well-known conventional route to yield beta-hydroxy esters. However, you can perform it with other metals also. In place of Zn you can perform it with Cu and Fe metal salts as the catalysts.
The supporting literatures are given below:
1)L. Ouyang, J. H. Liao, Y. P. Xia, R. S. Luo, Synlett, 2020, 31, 1418-1422
2) A. Chattopadhyay, A. Kr. Dubey, J. Org. Chem., 2007, 72, 9357-9359
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My group start some research on the development of new biodegradable nanoparticles based zinc. We where intersted to observe that based powder X-ray diffraction analysis, it was almost no differences between the Zn oxide and the Zn hydroxide.
What is key to differentiate between both following your experiences based powder X-ray diffraction analysis!
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François Eya'ane Meva The XRD patterns for ZnO (zincite is the mineral form) and Zn(OH)2 (3 forms wülfingite (orthorhombic), ashoverite and sweetite (both tetragonal)). A simple Google search of the mineralogical databases should pick up the XRD patterns. For example, wülfingite, from the Handbook of Mineralogy. I attach the page.
In aqueous based systems, Zn(OH)x where x is nominally 2 will always be formed first and ZnO formed on calcination. This is true of many metal oxide 'nanomaterials' (e.g. TiO2) found in the literature.
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No problem
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Maybe you chose a high temperature that caused your solution to gel. As for gravity, I don't think it will have any effect.
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Cadmium Zinc Telluride (CZT)
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Gerhard Martens Thank you so much!
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Hi All,
Is there any process to apply better life coating of MS plate instead of HDG and aluminum zinc ? I am looking for 25 years of metal protection ?
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Since it is an outside exposure, in addition to the zinc base primer coating, both intermediate and top coats of Polyuretane base paints should be used. DFT is as per the paint manufacturer recommendations. Excess DFT is not desirable.
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We're following a few different protocols based on Deerinck's work making a step in electron microscopy preparation with lead nitrate and aspartic acid. My question is what is more important, temperature or pH, and what is the best practice to combine the two. Thank you.
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No problem! Sorry it's a very late response to your question, but thank you kindly for responding so soon. That is interesting, I may attempt this if it works for you (adding the KOH to the buffer the night before). Yes I am also using this for contrast staining for Volume EM work which I am still quite new to but enjoying it.
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In one of my research studies, I'm analyzing the antagonistic effect of zinc and Phosphorus in water. The results are showing that the uptake of zinc is more than phosphorus. After a lot of literature review, I'm unable to find what was the exact mechanism behind this theory. I found studies about that in soil, not in water. Can anyone please suggest to me a proposed mechanism and does the results are on point or have some chances of error?
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P has a chance of precipitation with minerals that are present in water. For this reason may be uptake of zinc is more than phosphorus.
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Hlo everyone
I want to know that on hat grounds or how we should select different ligands for our protein from different databases and how to validate it whether the selected ligands are correct or not.
Please help me out.
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I agree to Prasad Dhiwar
You can just draw or upload the structure to Zinc database and perform similarity checks. It will give an array of molecules which can be downloaded in desired format.
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Hi everyone!
I would like to measure the zinc content of a bacterial culture supernatant using the spectrophotometer. Any suggestions?
Thanks!
Anna
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Thanks Jorgaq, but I was looking for something cheaper than a kit.
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Are there certain precautions while preparing zinc fingers - containing proteins for MOLECULAR DYNAMICS SIMULATION?
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Hello,
As stated, simulation with metal centers can become a difficult endeavour. It all depends on your ultimate goal.
A rather "simple" approach is the use of positional restraints. Other methods use dummy atoms or additional parameters to improve the description (either geometric or electronic, but not both). A comprehensive description would also need of QM/MM methods.
I'm not a frequent user of GROMACS, but the AMBER documentation has several tutorials you could use as a starting point to gain some insight on the possibilities and choose based on your intended purpose for the simulation.
Hope this helps,
Regards
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I was going through a research paper
Sol-gel preparation of ZnO films with extremely preferred orientation
along (002) plane from zinc acetate solution
author : Masashi Ohyama
for the formation of Nanorods of ZnO but the ratio of the precursors was not clearly mentioned and I want to know the ratio used.
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Maybe the following article can help. Please let me know if you have any other queries.
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Can anyone tell me the theory behind the antagonistic effect of zinc and Phosphorus in water? A diagram is preferred.
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There is an antagonistic relationship between phosporus and zinc.
High levels of available soil phosphate (soluble phosphates) result in reduced root colonization by mycorrhizal fungi. Insoluble phosphate does not affect mycorrhizal development. The insoluble phosphate in natural soils can represent as much as 99% of the soil’s total phosphate content.
The Truth About P
High phosphorus can induce a zinc deficiency. The observed response is chlorosis and shortening of the internodes.
The key to phosphorus when not optimized gives a plant stress reaction and the secreted stress compounds are excreted into the soil and have been found to stimulate the mycorrhizae soil fungi which promote a symbiotic relationship.
At very high phosphorus the mycorrhizae relationship is greatly inhibited.
Mycorrhizae greatly increase the ability of zinc to be mobilized and used by the plants which have the relationship optimized.
Using moderate phosphorus and inoculating with mycorrhizae can optimize plant relationship and avoid many issues.
The use of soluble zinc applied to the plants foliarly can be used to avoid the antagonism of Phosphorus with zinc. Zinc deficiencies are also mostly found in alkalaine low available zinc soils sandy and low organic soils.
If Zince is adequate in the soil and the pH and Phosphorus are optimized the presence of mycorrhizae can be optimized by inoculants.
The state of soil mycorrhizae can be assayed and a soil test can be very revelatory for optimizing the soil plant microbe interactions.
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I am collecting surface water samples and storing them in a cooler and then a fridge before testing. I am testing the zinc, iron, nitrate, ammonia, nitrite, and sodium chloride concentrations in my samples. I unable to test all of these samples immediately. How long can I allow these samples to sit in the fridge for before receiving inaccurate measurements?
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Thank you everyone. So what I am getting is that my metal concentrations should stay stable, but the ammonia and nitrate concentrations might change if there is biomass involved. If I strain any biomass out of the sample will that increase the testing time? I am testing pH, temperature, conductivity and turbidity on site, but testing metal, nutrient and salt concentrations within the next couple of days, is this acceptable? Garuav H Tandon, you indicated that total residual chlorine should be analyzed immediately, is this the same for sodium chloride (salts)?
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Does not have a bad effect on mechanical properties adding zinc instead of tin ?
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1.Zinc is much less costly than tin and can thus reduce the cost of raw materials.
2.Above 2.5% tin the alloy becomes too expensive to process; below 1.5% tin the alloy lacks strength and the ability to retain strength at its operating temperature.
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Reports of mixed metal oxides are there in the literature, but I want to enquire about the activity of pure zinc aluminate towards photodetection
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You are most welcome dear Arnab Chatterjee . Wish you the best always.
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Would you please kindly share the photo of Zinc layer plate or zinc electrode but not be downloaded google site , I need it as a photo in the lab ( or in Electrolyse system).
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Following!
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Hi everyone,
I am performing McMurry coupling reaction of my carbonyl compound. After reaction completion and purification, I found that instead of McMurry dimer, the reduction of ketone happened (from NMR). My reaction condition was TiCl4 (4 eq.)/Zn (10 eq.) at 0°C for prolong time period. Please enlighten your experience!
Would magnesium help instead of zinc?
Thank you in advance!
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Dear Gaurang,
thank you for sharing this very interesting chemical question on RG. As a synthetic inorganic chemist I'm certainly not a proven expert in the field of organic synthesis. I think that Greg Petruncio already provided some useful hints. Did you follow a published procedure? In any case, it seems that hydrogenation of the ketone seems to be a rather common side reaction of the McMurry coupling. For more information, please have a look at the following potentially useful article:
Hydrogenation and Other Side-Reactions During the Reductive Coupling of Ketones with Lowvalent Titanium (McMurry Synthesis)
Unfortunately this paper has not been posted as public full text on RG. perhaps you can access it through your institution.
Good luck with your work!
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Tin whiskers are a well known phenomena in the electronics industry which, while known about, do not appear to be very well understood. While they form on tin plated surfaces and can grow to lengths of thousands of times the thickness of that tin plating there has been no observed depletion of tin around the base of these formed whiskers. It is known that the whiskers grow out from the plating but I can't find any explanations or understanding as to how tin atoms could migrate from remote areas of the plating from different directions to build a tin whisker from it's base.
I have seen images of significantly more dense zinc whiskering which might suggest that the mass of zinc whiskers comes close to or (impossibly?) exceed the mass of zinc in the plating.
Does anyone know of any research done in to this phenomena?