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Vegetation - Science topic
Explore the latest questions and answers in Vegetation, and find Vegetation experts.
Questions related to Vegetation
We've just acquired a few new UAVs from DJI in the past few years with some great technical specifications with regards to RGB+TIR imaging combinations, but we've also had some technical issues arise:
1. How are people dealing with the very special DJI radiometric jpeg format? It appears to be quite different compared to the FLIR r-jpegs, also with some hidden parameters.
2. How are people getting the best image alignment for TIR images in Agisoft or other mosaicking software?
3. How are people extracting the thermal data for vegetation from their resulting images, whether for precision agriculture or for plant phenotyping?
We've had some issues but we've also found some solutions on the way, though the most optimal procedure is still up for discussion!
I participate in an international research project focusing on the relationship of happiness feelings to environmental conditions. Our hypothesis is that happiness may be valued more in regions with favorable environmental conditions. Among other variables we would like to examine the length of the vegetation period in several world regions. Therefore we are looking for data on the different vegetation period arount the globe that can be processed numerically (all our other variables are processed in SPSS). I found some databases but they are either local or employ a formats that are not accessible to most psychologists. I would appreciate any suggestions about how to find global vegetation data.
Hello, everyone!recently we are collecting ground hyperspectral measurement data ( such as soil, vegetation, snow ) with a wavelength range of 400-2500 nm. We have collected some spectral data, but it is still not enough for our research. Therefore, we would like to ask you where there is a free open spectral library ? Or we can cooperate together. Thank you very much.
How does habitat loss affect the marine ecosystem and how does water pollution affect animals’ marine life and vegetation?
My article focuses on the changes in Land surface temperature, vegetation, and waterbodies over a long time in an area by using Landsat and Modis data with a new methodology.
Hi,
I found in ERA5 reanalysis dataset, the LAI points to 2 variables: Leaf area index, low vegetation and Leaf area index, high vegetation, I also found 2 variables named low vegetation cover and High vegetation cover (0~1). So anyone knows if I want to get a LAI value for the specific pixel, How could I do? Just calculate LAI according: LAI = LAI_hv*high_cover+LAI_lv*low_cover or other methods?
I'm little confused and want to confirm this.
Thanks a lot!

How many vegetation indices are there using radar images not multispectral bands?
Is it possible to distinguish between plant geography and vegetal geography?
Is there really a need to distinguish vegetal geography from plant geography?
Do you know if there is any IMPACTED journal WITHOUT APC where environmental and ecological data can be published?
In particular, I am looking for something about 1) soil and vegetation data and 2) communities data.
Dear all,
I am evaluating vegetation recovery 1 year after wildfires in Mediterranean forest ecosystems. I have selected two factors: 1) previous (or not) silviculture treatment to wildfire and 2) exposition (south and north-facing slopes). I consider both factors as fixed factors, right?
Secondly, I have measured vegetation cover at different plots by combining two factors (treatment x facing slope). In the end, I have a matrix containing vegetation cover (in cm) for each plant species measured in the combination of factors (treatment (yesxno); facing slope (NxS)). Shall a first transform the matrix using square root and then build the resemblance matrix? What is best for my analyses ANOSIM or PERMANOVA?
Thirdly, Shall I make any previous analyses like checking the variability of variance or homogeneity of my data?
I am using Primer software.
Thanks in advance
What are the movement of rock soil and vegetation down a slope andmovement of rock or debris down a slope section of land?
What are the major types of vegetation in the world describe vegetation in different rainfall conditions and vegetation associated with heavy rainfall?
Hi, I have been studying to understand the future climate change impact at the catchment level and its relation to vegetation growth. I found some researchers modified the SWAT version (Fortran code modification?) as well as changing the code (executables). I am not good at programming to find the code location and edit. I am wondering if any researcher could help to provide any documentation on how to modify SWAT executables. I appreciate your support in advance. Thanks
Do you think vegetation indices can be calculated on a toolkit primarily designed for landscape fragmentation. The toolkit accepts all shp files as input layers (Tool- ZonalMetrics-Toolbox).
I have used the toolbox to produce landscape fragmentation indices for my study area and am now attempting to calculate vegetation indices (NDVI/MTCI/EVI). The Class Area (CA), Number of patches per class (NPC), Zone Area (ZA), and Percentage of zone (PZONE) all return the value 0 whenever I attempt to perform the AREA metrics with 5000 hectare size of hexagons.
Multiple attempts have been made in both arcmap and arcgis Pro (link- https://github.com/ZGIS/ZonalMetrics-Toolbox).
For the zonal metrics calculations to treat the ndvi polygons as one CLASS I created a field with the value 1 so that all NDVI shp files contain that number. This attempt yielded a result of 0 as well.
Please let me know if you think it is possible to calculate the vegetation metrics on the 5000 hectare size hexagons.
Kind regards,
Sanjana
waves passing through rigid vegetation


Do different types of natural vegetation dependent on different climatic conditions and India possess a great variety of vegetation?
What are the different types of vegetation found in India and describe the vegetation of high altitude and types of climate and vegetation in India?
What is tropical region and what kind of vegetation in some areas in the tropical zone experience heavy rainfall throughout the year?
I want to develop a spatial distribution map of my study area correlating NDVI and LST in ArcGIS. Please help me out in the context.
How can I efficiently handle and analyze large remote sensing datasets in Python, specifically for vegetation indices calculation?
I am currently working with a dataset containing multiple years of Landsat imagery, and I want to calculate various vegetation indices such as NDVI, EVI, SAVI, etc. However, my code is running extremely slow and I keep running out of memory.
How can I optimize my code and handle this large dataset in a more efficient manner?
[Important] I don't want to use Google Earth Engine or any online platforms such as Google Colab.
--- Here is my sample code ---
import numpy as np
import rasterio
from rasterio.plot import show
from rasterio.windows import Window
# Open raster file
with rasterio.open("landsat.tif") as src:
# Define window size for processing
win_height, win_width = 256, 256
# Loop through windows to process data
for i, j, window in src.block_windows(1, height=win_height, width=win_width):
# Read data
data = src.read(window=window, out_shape=(src.count, win_height, win_width))
# Calculate vegetation indices
ndvi = (data[3] - data[2]) / (data[3] + data[2])
evi = 2.5 * (data[3] - data[2]) / (data[3] + 6 * data[2] - 7.5 * data[0] + 1)
savi = ((data[3] - data[2]) / (data[3] + data[2] + 0.5)) * 1.5
# Write indices to output file
with rasterio.open("output.tif", 'w', driver='GTiff',
width=win_width, height=win_height, count=3,
crs=src.crs, transform=src.transform,
dtype=np.float32) as dst:
dst.write(ndvi, 1)
dst.write(evi, 2)
dst.write(savi, 3)
Hello
I have some ground soil moisture data for the days of the Sentinel 1 satellite passes.
I want to measure the accuracy of algorithms in estimating soil moisture by using machine learning algorithms and the vegetation index obtained using Sentinel 2 images, but I don't know how to introduce the train and test values to the algorithms.
Thank you for your guidance
I have examined the vegetation cover for 9 sites, using a quadrant and estimating % cover in the quadrant. Each site has 6 measures. There are 3 treatments: ungrazed, extensive grazing and intensive grazing. 3 sites for each grazing regime.
Which statistical tests can I use to examine if treatment impacts the % cover?
Recap:
9 sites in total
3 sites ungrazed
3 sites extensively grazed
3 sites intensively grazed
6 data points per site
cover is estimated as % cover
Thank you!
I wondered if tomatoes could grow in a closed container last summer. So I put some soil in a water bottle and a few tomato seeds and coriander seeds on top of the soil and then covered the seeds with a very thin layer of soil. Afterward, I watered the soil very little, closed the bottle tightly, and placed it on the window side. I didn't touch the bottle again, but after a while, I saw that first lichen-like structures formed in the soil, secondly Elodea-like organisms emerged, and a plant had grown.
How is this whole process possible without anything but oxygen, regular watering, and seeds? And what could be those plants which are growing inside the bottle?


I am using in-situ measured albedo and a new satellite remote-sensed microwave emissivity difference vegetation index (EDVI) to indicate vegetation water content (VWC). I am looking for any existing physical models or numerical models for the leave to calculate the effects of multiple confounding effects on albedo and to simulate the response of albedo to chlorophyll (Ch) and VWC.
Albedo = F (Ch, VWC, ) Any existing model?
Physical-based albedo model for leave?
What's the best method for dewaxing vegetal fibers with organic solvent? maceration or reflux? And what is the appropriate duration for each method?
Thank you.
Do you think it's possible to use the temperature condition index (TCI) as a proxy of soil moisture ?
It has been used widely for vegetation thermal stress but I was wondering how can it differentiate soil moisture thermal stress from vegetation thermal stress?
I'm doing research on abiotic factors on steppes. But I can't find a source on bedrock effect.
Will the vegetation cover have any major difference in the territory of two different primates? If yes, how can it be studied further?
I have complied LPJ-Guess model using visual basic code. I can run the model with the test data without any errors. I need to run the model for the Australian climate data for vegetation modelling. I am struggling to add the input files using CMake. I am wondering if anyone is or already applied LPJ-Guess in any catchment for vegetation modelling, can assist me. I appreciate any suggestions in advance.
I have a bacterial suspension obtained from vegetal material. I would like to purify it from vegetal material (eg. tannins) to obtain a clean bacterial suspension. Any suggestion?
If I select more training points in specific class such as built up area then built up area dominated in map.
If I select more training points in vegetation class then vegetation areas are dominated in map. What are the reason?
Hello, all:
I am looking for some Open-sourced Downscaling Algorithms or Methods applied to the High-resolution Remote Sensing Data (such as Land Cover/ Vegetation Type and so on).
Could somebody help me out? Appreciate that!
I'm treating BV2 with vegetal compounds in order to study the effect on inflammation.
I am looking for a natural (potential?) vegetation map of Europe that I could use in a GIS framework. I found
Udo B. et al. 2004 Karte der natürlichen Vegetation Europas. Map of the Natural Vegetation of Europe. Maßstab / Scale 1 : 2 500 000
Is there he digital GIS version of it? Is it available on the Internet? Or is there something similar I could use. I would like to use it as a background to illustrate my species distribution maps, showing the main vegetation types in different regions.
In kang kong, plants are raised both from seeds or cuttings although plants raised from seed is the normal practice. But it has been observed that not all the stem cuttings of kang kong used for propagation exhibited desired performance i.e. produced healthier plants. Only one or two specific nodes exhibited better performance.
How can extracted the building point, vegetation and ground point for terrestrial laser scanner data (point cloud) please suggested the publication and automatic MATLAB code.
Which vegetation-cover/LU/LC data (not TIFF or image files but NetCDF or similar data types) would you suggest investigating a climate simulation over India?
I am looking for literature about "Tugai". The Tugai type of vegetation is a plant complex of river valleys of all altitudinal and landscape zones, and mainly desert, in which communities of the tree, shrub and herbaceous vegetation are combined. Typical Tugais grow in a narrow band in valleys and river deltas - along the banks, islands, on low-lying terraces, interspersed with meadows and thickets of herbaceous vegetation. I have some literature. I am looking for more information to further improve our research. If anyone has literature on this, please share with me. Thank you very much in advance.
I need to do a simulation in a large area but ENVI limits me a lot in size in the Lite version
I have climate and vegetation data by latitude longitude. The vegetation data is a categorical variable with 20 possible options. The climate data is relative frequency of occurrence (RFO) for a dozen climate states - adding up to 100%.
What I want is a model where I can input the vegetation data classification, and it gives a most likely RFO for each climate state.
Using Random Forest models I already know that the climate data can predict the vege classification ~80% of the time, with quite a lot of 'near-misses' according to the confusion matrix, but what I need is the flip-side of this - if I input the vege data, can I get the RFO of the climate states.
I have been looking at K-means clustering, Linear Discriminant Analysis and Multiple Nominal Logistic Regression, but I am unsure if these apply to what I am trying to achieve. I also thought about producing probability densities for each climate state for each vege type, but I am not sure if there is already a method that would do that in a more functional way.
Are their existing statistical or machine learning techniques that achieve what I am trying to do?
Can anyone recommend papers or any kind of publication dealing with updated perspectives on ecological-vegetation succession? Any researchers working on this subject?
Hello everyone.
My team is seeking for a researcher who is conversant with the use of Remote Sensing tools to model vegetation cover/height. We have modelled high-quality daily wind speed data and need to incorporate vegetation height information into it before a highly rated journal accepts the manuscript for publication.
Kindly contact me if you have the required skill.
Thank you.
Hello Everyone,
I am working on a study area dominated by the agricultural landscape, and I have sentinel 2 image for October. I just wanted to understand if there is any way to distinguish / separate crops from natural vegetation in satellite image.
Hi,
I am a newbie, I have a sentinel2 .tiff image, I would like to calculate some vegetation indices, my question is how can I know names of bands composing the .tiff image in-order to select the right bands for the right VI calculation?
I use QGIS SOFTWARE.
We know that the threshold value varies by geography. For the reason identifying this value is challenging and there is a considerable risk of identifying the incorrect value. That is why my primary goal is to precisely determine threshold value so that I can separate vegetations for a specific area from the rest of the landscape.
I want to compare percent vegetation cover on a reclaimed site vs. percent vegetation cover in a reference area (i.e., an adjacent, not disturbed area). Can I do this with Sentinel or Landsat imagery? If so, would it be best to just create a ratio between something like NDVI in the reclaimed area vs. that in the reference?
The plants were healthy at vegetative stage but at flowering stage in some plant leaf structure changed and gradually this symptom spread in many plants in field. We uprooted more than 20 plants and still this disease in field has potential to reduce yield dramatically.





+1
Hello,
I have a 1x1m image of a winter wheat and a reference value from an expert regarding canopy cover. Now I am supposed to derive the canopy cover using vegetation indices (NDVI, SAVI, VARI and GRDI) to find out which index works best.
My question is: So how do I get the percent canopy cover from the indices?
Here's what I've been thinking about: First, I classify the images using the thresholds in the literature (example NDVI: >0.2 = soil; <0.2 = vegetation). Then I reclassify them to access the attribute table and pixel count. Now I would actually only have to count these. So: canopy cover (%) = number of vegetation pixels / number of total pixels.
Is this variant a possibility? Or should I rather go via training areas and maximum likelihood methods?
Thanks for advice.
Kindly tell me the wattage and time for cell lysis of Bacillus endospore and vegetative cell.
What quantitative index/indices should be used when measuring biodiversity of Urban Spontaneous Vegetation (USV)?
I was producing vegetation indices in a study area in the tropics with MOD09 product (Land Surface Reflectance, 8-days, 500m) and also with MOD13 (Vegetation index, 16-days, 500m). I got more or less the same result with some small differences due to the fact that the former product is an 8-days composite and the latter is 16-days composite. But I noticed that the quality flag are completely different, the one from MOD09 is very 'permissive', the could masking is almost unnecessary but with MOD13 is the opposite, because I lose a lot of data due to clouds. I think that the QA flag of MOD13 should be the correct one because my study area is in the tropics with high presences of clouds, but I wonder why the QA flag of MOD09 is so different and seems to be unreliable.
Can someone give me a clue?
At present, the research direction of vegetation on slope stability has changed from mechanical mechanism to what direction? We know that the effect of vegetation roots to reinforcement makes the slope anti-slide stability enhanced, but under the condition of heavy rainfall, the roots make the potential flow increased. How can we further study this mechanism?
Dear researchers,
I need satellite images with a resolution of 0.5 metres to create a land cover classification map.
Can you tell me from which sources or which satellite images I can use?
Many thanks in advance!
I need to classify these:
1. Hard Surfaces
2. Soft Surfaces
3. Sparse Vegetation
4. Dense Vegetation
5. Buildings
I am working with MOD17A3 time series for trend analysis. Not sure I suppose to exclude Fillvalue since I am focusing on vegetation. For example 32762 = land cover assigned as urban/built-up
The Geology of the Himalaya is a record of the most dramatic and visible creations of modern plate tectonic forces. I wonder how vegetation flourished in such a mountain system.
prospection minière dans le site de khouribga
Non-vegetation is widespread in arid/semi-arid areas, and non-vegetation plays a pivotal role in soil and water conservation and carbon sequestration. However, the current assessment of non-vegetation carbon sequestration has always been a bottleneck. Commonly used ecological models are mostly based on green vegetation, and the amount of carbon sequestration is further obtained through the utilization of light energy. However, how can non-vegetation use ecological models to assess their carbon sequestration?
If we apply atmospheric correction to the data to enhance the coherence, will it provide accurate deformation result in a densely vegetated mountainous region like the Himalayas.
Hi!
I realize a time series with MOD09GQ to finally extract index vegetation but there are many many many solutions to create mask cloud and each has his complex methods with personel algorithm. So the first question is :
- Can I used layer QC_250m from MOD09GQ to make mask ? Should it necessary to create shapefile from layer and applicate in surf_b01 or b02 layer ?
Or
- I must used MOD35 but.... BUT... the time including date and hour and they are not the same between both
T_T
Thanks to your rely
best regards :)
Charlène
Hello, another Q to experts out there. Can someone point out reference to measurements of global and diffuse NIR (700-1500 nm) down-welling measurements in clear sky conditions. We are having a hard time explaining as to why at-sensor NIR readings (1.5 km above ground) increase with increasing solar elevation in low vegetation, asphalt, sand etc, but not to the same extent in trees, and especially some deciduous tree species behave really oddly as we see no increase in signals at all! (at view-zenith angles of 0-20 degrees, while solar elevation goes up from 30 to 40 degrees and irradiance should increase 25%). Visible range signals go up with solar illumination as can be expected. If this is not an artifact it has certainly been noted by someone. Anyone familiar with reference or textbook? Our vegetation is very dark at 400-700 nm (rho 0.02-0.04), while rho are 0.2-0.5 in green vegetation, incl. trees).
ilkka
Hi all
I'm asking if we could be helped by someone so that we don't miss relevant research!
We are looking at the radiometry and geometry of repeated waveform LiDAR scans in vegetation such that non-scene-related aspects (sensor etc.) that influence the signals are minimized (by using same trajectories, same sensor, same sensor settings) so that signal changes would reflect the structural changes in the vegetation/trees over time.
Is anyone aware of relevant papers that deal with multi-temporal LiDAR (waveform or discrete), impact of vegetation phenology on LiDAR (radiometric) features?
I'm also willing to discuss the topic, if someone shares an interest.
Thanks, ilkka korpela
I've been collecting & planting seeds of butterfly host plants for the restoration program. And I need research references especially for tropical Southeast Asia native species (include all types of herbs, bush, or shrubs). I looking forward to having some recommendations from botanical experts.
The idea of a tree belt in Africa may be fine and helpy, but it is also realistic when then land is missing for nourishing the people? In the Kagera district I saw in reality daily GREEN (!) trees cutting people carrying with bicycles from thinning forests only to make for cooking with open fire with green tree stems extremely energy lossy breakfast, lunch or dinner for their families.
I saw the full tree covered Rubondo National Park in Tanzanias Victoria sea, but here where nature is tree covered, no people would find enough human food. But reforestation of cleared areas I find always a good and sustainable practice. If you fly over Tanzania most land is deforested for crops for food production.
Are not models saying that tropical ecosystems will store less carbon in a warmer climate while at high latitudes warming will increase storage of carbon in trees (10.1016/B978-0-12-382225-3.00095-5) ?
So what helps more to help people?
Or people should not be helped and more delivered to their destiny as nature itself does regulation overpopulation and undergoing in a Social Darwinism kind?


I am comparing the differences in microbiome community composition between animals according to three different dietary regimes: hay, green vegetation, and restricted feed. Looking at a PCoA plot, the centroid and dispersion of the restricted feed group is obviously different from the two others, and comparing bray-curtis distances with the vegan::adonis() function yields a high R squared and a significant p-value. The green vegetation and hay groups appear the same, but running an adonis test comparing these two groups yields a significant p-value (albeit a very low r squared value of 0.02). Must I reject the null hypothesis that the hay fed group and the green vegetation groups are homogeneous, despite the low r-squared value and the disagreement with the PCoA plot results?

I am interning with the Forestry Division and we had a pipeline leak on thousands of acres and it discolored the trees to brown and some to black. I was wanting to find out if this gas has any fetal effect on pine of hardwood. If you all know of any articles, journals, etc that can tell me what happens to vegetation would be very helpful on what we are dealing with.
We reassessed the vegetation of Mormon Island, the largest contiguous tract of wet meadow and lowland tallgrass prairie remaining the Central Platte River Valley of Nebraska 40 years after its initial inventory and examined species invasion, climate change, and restoration as drivers of community change. It is on the long side at just over 8,000 words of text, not including the citations. I have been considering a number of journals, but feel like most journals oriented toward a priori research questions don’t publish inventories, and we would love to include the plant list at least as an in-print appendix. However, it goes beyond the traditional scope of a straightforward inventory because of the long-term nature of the data and the theoretically grounded questions we ask. Any suggestions would be greatly appreciated!
I have some forest polygons and would want to assess the effects the direction (south, north etc) have on vegetation. How do i then determine which forest edge faces which direction either in QGIS or R?
We are launching our project CoKLIMAx, which is the application of COPERNICUS data for climate-relevant urban planning using the example of water, heat, and vegetation.
Are you aware of any digital toolboxes that are already being used in the urban planning context with the objective to increase urban resilience?
We are looking forward to your reply.
Best regards,
Michael.
Hello! I am looking for vegetation data and aerial images for a region of Costa Rica, possibly going as far back as 1998. I have gone through Landview and EarthExplorer but I'm so overwhelmed - half the time I get spotty data or partial images. I'm looking for a resolution of 15m or less. I understand older stuff won't have this resolution but to be honest, even though data from some satellites are supposed to have this resolution, the images show otherwise. I keep getting general advice from colleagues, but when it comes down to it, I can't find what I'm looking for, and I'm hesitant to pay for maps when I am not even sure they will be what I'm looking for. Thanks in advance.
I want to know how the desert vegetation storage water, such as "Bottle Trees"(Cavanillesia-arborela), so scientists can use genetic technology to modify vegetation so that it can store more water in arid regions.
Now trying to find useful literature about it - any literature tips are greatly appreciated. Thanks a lot
We are using Specim IQ hyperspectral camera for image-based phenotyping in soybean plants at the vegetative stage. On processing the image on ENVI software, we got negative values for ARI1 and ARI2 in both drought stress and control. When I checked some published articles for reference, I found that the range for ARI is 0-0.2.
I have made a listing of the flora of some region, obviously I made the sampling using polygons covering a wide range of the studied area.
Now I want to classify the polygons I have made by their similarity/dissimilarity on the diversity and abundance of the flora.
The questions comes next, how can I do it? Which index or coefficients should I use? (I have find bray-curtis, jaccard and other)
And which algorithm/method should I use for the clustering diagram?
Any help or literature that helps me to clarify this will be much appreciated.