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Are functional maps in the cortex used by the brain to carry out computations or are they just a byproduct of wiring minimization?
A key element to answer this question is to know if, when neurons from a cortical map project their axons to the dendrite of a downstream neuron, they retain any spatial order proportional to their location in the map.
For example, in the cartoon below, the four neurons from a cortical map (in black) project their axons to a downstream neuron's dendrite (in green). The relative spatial position of the synapses (black circles) is proportional to the relative position of the neuron in the map.
I would be very grateful if you could point me to any relevant paper addressing this question, in particular in the cortex of the primate (e.g. axon tracing experiments).
Thanks!
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Neocortex pyramidal cells are the same with this polarized distribution. You can find Min Wang’s HCN paper in Monkey. Hippocampus circuit could be very clear nowadays. Non-pyramidal cell usually do not have this polarized HCN, but they could have polarized distribution of synaptic AMPA/NMDA/GABA receptor, like I mention in one paper previously. You can check neuron morphology, active properties of the membrane and synaptic mechanisms in your case to evaluate the total computation function.
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I'm wondering how long a neuron could continue to fire action potentials if all transporters (those using ATP) and co-transporters (those using other ion gradients) were blocked. Would it be several seconds, several minutes, an hour? I'm specifically wondering about mammalian cortical neurons.
I'd be interested in either empirical evidence or in back of the envelope biophysical calculations.
I'm guessing it is in the range of a minute since hypoxia can cause problems within a few minutes (and even that is buffered by the volume of blood).
Why I ask: Making a model. My simulation (based on biophysical assumptions) is losing it's potassium gradient faster than I would have expected.
Thanks in advanced. Really appreciate it.
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INTERESTED TOO
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Brain research utilizes diverse measurement techniques which probe diverse spatial scales of neural activity. The majority of human brain research occurs at macroscopic scales, using techniques like functional magnetic resonance imaging (fMRI) and electroencephalography (EEG), while microscopic electrophysiology and imaging studies in animals probe scales down to single neurons.  A major challenge in brain research is to reconcile observations at these different scales of measurement.  Can we identify principles of neural network dynamics that are consistent across different observational length scales?
In recent experimental studies at different scales of observations, power-law distributed observables and other evidence suggest that the cerebral cortex operates in a dynamical regime near a critical point.  Scale-invariance - a fundamental feature of critical phenomena - implies that dynamical properties of the system are independent of the scale of observation (with appropriate scaling).  Thus, if the cortex operates at criticality, then we expect self-similar dynamical structure across a wide-range of spatial scales. Renormalization group is a mathematical tool that is used to study the scale invariance in equilibrium systems and recently, in dynamical systems with non-equilibrium critical steady-state. In the context of neural dynamics,  renormalization group ideas suggest that the dynamical rules governing the large-scale cortical dynamics may be the same as dynamics at smaller spatial scales (with appropriate coarse graining procedures).
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Is there an easy/painless way to get voltage time courses of postsynaptic potentials? Having variable (E and/or I)PSP amplitudes and the times when they occurs is all I need, with enough events or trials for a smooth avg.  This is for a compneuro class I'm teaching, I want the students to be able to play with the data and understand the variability.
Thanks in advance!
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What about differentiating the responses and detecting the time of the zero point as the peak?
Cheers
John Reynolds
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Orch-OR theory for consciousness asserts that the microtubules are the neural structures that support the quantum effects. Let's assume that it is true. Therefore, if they have to play a role in the brain, they need to effect the signal transmission in the brain. Is there any indication for such an effect?
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Dear Abolfazi,
Indeed microtubules are important in function of ion channels and neurotransmission. I think most importantly the microtubules are involved in transport of proteins (including ion channels), neurotransmitters/modulators, organelles (including mitochondria) from soma to the periphery. This microtubular role is very critical for axonal transport of neurotransmitters to the pre-synaptic terminal, without it the terminal will not have enough neurotransmitter and energy required for synaptic transmission. Anything that disturbs or reduces microtubular function results in significant neuronal dysfunction.
best wishes,
Refik
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A significant challenge in present-day theoretical neuroscience is to determine the relationship among the three types of connectivity. The relationship would likely be derived from segregation and integration of activities in the human brain.
AIMS Neuroscience is requesting paper submissions on this topic for our February 2015 issue. Manuscripts will need to be received by December 28, 2014, and decisions on acceptance will be completed by January 28, 2015.
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Fantastic! I am actually working an an article now that I would love to submit. Please change the dates in the question as well as a link the the submission requirements, formatting, etc. Thank you
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Require a Quantum Physicist to work on a collaborative paper on Cognitive Neuroscience
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In principle, this might be a good idea. But it all depends on what exactly you hope to accomplish. Good and bad ideas are very close in this area.
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We have an artificial neural network to detect patterns in input. training the system to learn specific pattern when the position of pattern is constant is easy and it can be done by feed forward neural network and using back propagation. But the question is that how can we make it position invariant so it can detect the pattern in any place of input ?
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weight sharing just can do on a little bit shift . it can not do on big shift.
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does anyone has some Ideas about the relationship between these two phenomena?
aren't they the same thing with different names?
if they are not, what is their exact difference?
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Hi Abolfazl,
neuronal avalanches are very different from waves.  You can imagine an avalanche as a single pulse that propagates through whatever medium iwith an equal likelihood to continue or die out in the next time step/generation.  This is best modeled by a critical branching process.  the resulting avalanches form distinct spatiotemporal patterns that selectively branch different points in space.  avalanches have in common with waves that most of their propagation is carried out by local interactions, like dominos that topple and the cascade of toppling dominoes bridges long distances.  The important general aspect of avalanches is that they indicate a particular, critical state of the system which has many advantages for information processing. 
hope that helps,
best
dietmar plenz
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I have been baffled by this question for quite some time. It started when I read a lecture note stating the use of RC-circuit as an equivalent electrical system. It replaces the potential difference between the extra-cellular and intra-cellular fluid by a battery, the ion channel by a resistor, and the membrane by a capacitor. I have tried to make sense of that assumption but without any success. Is it me or something is wrong with that model?
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Hi,
If you need a good text book , I would advise you the axon guide available at : www.octopus.huji.ac.il/course/Links/Axon_Guide.pdf. (or at molecular devices)
That's really a "must have" to start with electrophysiology.
Regards
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I have studied two-dimensional nonlinear systems, to analyze neuronal behaviour. Anyone know the best starting point for learning about higher dimensional nonlinear systems?
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If you want to read something more specific about 3D neuron models, you can refer to papers about the bifurcation analysis of the Hindmarsh-Rose model.
Hope this helps!
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According my thinking, this is process of finding similarity of our new percepts to the patterns representing concepts and ideas learned during life experience. They all must create coherent model of surround and reality. If this understanding fully reflects meaning of the notion "understanding"?
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Wieslaw,
Thank you for the answer.
Are you sudgesting that the visual system of new born babies are blank slates? That visual learning starts from scratch. That babies do not have any a priori visual knowledge? Absolutely all comes from experience and the basic visual architecture?
Newborns’ Face Recognition: Role of Inner and Outer Facial Features:
''Evidence supporting the claim that not only do
newborns differentiate between faces and nonface
visual objects but they also process information
about individual faces, derives mainly from the observation
that, within hours from birth, infants show
a visual preference for their mother’s face over a
female unfamiliar face (Bushnell, 2001; Bushnell, Sai,
& Mullin, 1989; Field, Cohen, Garcia, & Greenberg,
1984; Pascalis et al., 1995).''
This is just one among thousand of studies that show that we are borned with some visual competence and not with a visual blank state.
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The measure "phi" as the capability of a system to produce integrated information seems to just define necessary connections. However, it seems that it doesn't indicate what kind of neural dynamics integrates the whole existing information all across a complex. is it synchronization, recurrent activity or something else?
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Hi Abolfazl,
I agree we cannot rely on IIT too much but I am not sure that the conclusion that a Hopfield network would be conscious is crucial. I think the deeper problem is that any assignation of phi is arbitrary except for a set of signals that are convergent on a single event, as Leibniz pointed out. (They knew enough neuroanatomy in the seventeenth century to have the same conversation we are having but people forget historical literature.)
The 'well-establishment' of an idea is never a scientific argument, Abolfazl. The received wisdom is usually wrong. And in philosophical circles emergence is highly contentious. I personally think that emergence does exist, but not in complex aggregate systems. These are explained by their parts. Examples of emergence I would give would be chirality or the acquisition of Goldstone modes by crystals. Goldstone modes can be completely unrelated to any parts.
I am not sure that you really mean 'disambiguate'. Maybe you just mean 'say what you mean'. But I think I did. It was just a bit surprising. The idea that one neuron can be conscious has been suggested by many people for three hundred years (since cells were seen). There is nothing new about it and in the nineteenth century it was commonplace, when it was called polyzoism. The theory is very much alive and well, with some recent modifications variously by myself, Steven Sevush and Erhardt Bieberich.
My proposal would certainly entail that connecting a single neuron to very carefully designed inputs could give it a sense of watching 'Star Wars' on DVD, but the problem is not that this is implausible, simply that ascertainment of the existence of the experience is impossible. We need more subtle approaches. They may pose intractable problems but maybe no more than the Higgs boson.
You think it unlikely that a single cell could host an experience of Star Wars. But an intuitive sense of implausibility needs to backed by scientific argument. Why should this be implausible, other than in intuitive terms? William James said in 1890 that it was the only solution that was not self-contradictory. I don't think much has changed since then. We need to be 'open minded'.
Very best wishes
Jo