Science topic

T Lymphocytes - Science topic

T Cells are primary agents in immunology and call mediated immunity. Helper, Cytotoxic, Memory, Regulatory, Natural Killer and gamma delta T Cells, their development, mechanism and application
Questions related to T Lymphocytes
  • asked a question related to T Lymphocytes
Question
2 answers
As we know that the expression of PD 1 is less in jurkat cell. To express PD1 jurkat cell need to be stimulated or activated. But there is a chance of activation induced apoptosis. How this activation induced apoptosis can be reduced so that only cancer cell mediated apoptosis is highlighted. IS there any step to be followed after stimulation of T cell so that activation induced apoptosis is reduced?
Relevant answer
Answer
Thank you Malcolm Nobre for your answer
  • asked a question related to T Lymphocytes
Question
2 answers
I`m trying to observe pro-inflammatory cytokine release in T cells obtained from patient PBMC when exposed to a specific antigen in vitro.
But I`m not sure if I should use anti-CD3/CD28 or anti-CD28/CD49d because I saw in different papers that both can be used. I did read that CD3/CD28 is focused on T cell expansion while CD28/CD49d is focused toward cytokine amplification, but if I want to just check cytokine secretion would it matter which one I use?
Also would it be okay to use all 3 stimulatory factors (CD3, CD28, CD49d)?
Relevant answer
Answer
The choice between anti-CD3/CD28 and anti-CD28/CD49d depends on your experimental goal. Anti-CD3/CD28 activates the TCR via CD3 and provides co-stimulation via CD28, inducing both proliferation and cytokine secretion, making it essential for antigen-specific responses. In contrast, anti-CD28/CD49d primarily amplifies cytokine secretion without significant TCR activation and is more suited for general cytokine studies. Using all three (CD3, CD28, and CD49d) is possible but may result in excessive activation, potentially masking antigen-specific effects. Additionally, note that Tregs do not express CD49d, meaning anti-CD28/CD49d will not activate them, whereas anti-CD3/CD28 could. Pilot experiments can help determine the best approach for your system.
  • asked a question related to T Lymphocytes
Question
4 answers
Hi all,
I want to introduce two separate receptors in human T cells. I have the receptors in separate retroviruses and plan to follow a retronectin-spinoculation protocol. I was wondering if anyone had any experience with viral introduction of two separate genes and the best way to go about it? I haven't titred my virus as we can usually get around 40% transduction using fresh virus. Can I just do a 50/50 mix of the two viruses and then spin the plate to bind them? Is there a chance of viral interference or inhibition? They both have exactly the same backbone vector with a slight alteration to the receptor structure. Is it better to do it sequentially or simulatenously?
I will be perfoming a MACS sort but any advice on the actually transduction process would be really appreciated!
Thanks :)
Relevant answer
Answer
our virus is pseudotyped with GaLV.
  • asked a question related to T Lymphocytes
Question
2 answers
Is the most significant breakthrough so far "Published in Nature Aging, the new research reveals that the trick to anti-ageing lies within the white blood cells known as T cells. The researchers behind the study discovered that they can reprogram these cells to turn them into ageing-cell-killing machines known as CAR (chimeric antigen receptor) T cells.
Relevant answer
Answer
RNA molecule rejuvenates ageing mice
"Injecting old mice with an RNA molecule called miR-302b seems to reverse some signs of ageing — helping them to live longer, regrow hair and maintain their physical and mental abilities. The treatment works by targeting one of the hallmarks of the ageing process: a stage called cellular senescence, in which cells lose their ability to replicate. Researchers hope the findings could one day lead to the development of anti-ageing drugs, but more work is needed to determine whether they translate to people..."
  • asked a question related to T Lymphocytes
Question
2 answers
Hello!
We are using LNP to deliver circular mRNA into T cells. However, compared with linear mRNA, the transfection efficiency and protein expression duration are similar. Are LNP generation or transfection protocols different for circular mRNA delivery compared to linear mRNA. Thank you for your suggestion.
Relevant answer
Answer
Park Sowon This looks like typical AI generated garbage. Many words and links, but no answer at all. It plagues and poisons human-to-human interactions and transmission of real lab experience.
  • asked a question related to T Lymphocytes
Question
1 answer
I want to study the effect of FoxP3- CD4 T cells on immune control of tumors in mice. Does anyone know a genetic (inducible-) mouse model where I can specifically deplete either all FoxP3- CD4 T cells or specifically Th1? If not, could you think of a way to target those cells specifically? Thanks in advance!
Relevant answer
Answer
Hi Bayerl,
We can consider the selection and strategy of this animal model in several ways.
1. FoxP3 KO/condition KO model
Cut off the path of CD4+ cell to CD4+ Foxp3+ cell. Fortunately, we have this KO model. Strain NO. T013716
2.TNFRSF3 KO model
I read some literature and found that CD4+ FOX3p+ cells have Tnfrsf3 protein on the surface. But this product is currently under development.
If you want have more technology exchange, and interest in our products.
Please keep in touch by email: fangxun@gempharmatech.com
  • asked a question related to T Lymphocytes
Question
2 answers
Is it somehow related to tumour microenvironment or some other reason behind this.
Relevant answer
Answer
Hello Ananya,
The reason is as follows.
High T cell densities may mediate effective killing. High T cell densities enable high contact frequencies and multiple T cell–tumor cell encounters. This may increase the likelihood of multiple T cell simultaneously attacking a single target cell (cancer cell). In addition, cytotoxic cytokine release, including interferon-γ and tumor necrosis factor, is positively associated with high density T cell infiltration.
High T cell density which can be called swarming enables efficient apoptosis induction by favoring serial perforin-dependent hits, preferentially by different T cells whereas the ineffective killing at low T cell density largely relies upon single encounters.
A successful T cell effector function correlates with high local T cell densities. If a 1:1 ratio for T cell : cancer cell is taken,
the T cells will form predominantly short-lived interactions with target cells (cancer cells) which rarely result in direct apoptosis induction.
The individually ineffective T cell contacts induce sublethal damage, which becomes integrated over time in the target cell until
apoptosis is induced. Through such a multi-hit mechanism, T cell induce tumor cell death when density is high, whereas tumor cells repair sublethal damage and survive when T cell density is low. This mechanism of “additive cytotoxicity” explains how individually ineffective interactions become effective at high T cell density.
Thus, in apoptosis assay, the T cells have to be higher in density than the target cells ( cancer cells).
Best.
  • asked a question related to T Lymphocytes
Question
5 answers
I use viral peptides to activate the T cells after isolating the PBMC. Is that enough to promote T cell expansion with interleukins?
Relevant answer
Answer
Hello Salma,
Yes, it should be enough.
Full activation of T cell requires the cell to receive and integrate signals from a minimum of three diverse types of receptors:
A. The T-cell receptor (TCR, signal 1),
B. Costimulatory receptors (signal 2), and
C. Cytokines (signal 3).
Each of these signals elicits biochemical signaling cascades and provides information to the T cell to help shape the generation of effector T cells.
The stimulation can be of two kinds namely,
1) antigen dependent in which case you will require an antigen and co-stimulation from antigen presenting cells and
2) antigen independent in which case you will not need an antigen but a mitogen like PHA or anti-CD3 and anti-CD28 antibodies.
Cytokines such as IL-2 have their role to play as a growth and survival factor capable of inducing T cell proliferation.
Best.
  • asked a question related to T Lymphocytes
Question
2 answers
Hi everyone,
I am seeking advice on the optimal protocol for RNA extraction from human T cells that have been frozen at -70°C. Specifically, would it be more beneficial to culture these cells for 18 to 24 hours in complete media (TexMACS + 10% human serum) with 100 IU of IL-2 before proceeding with RNA extraction, or should I initiate the extraction process immediately after thawing?
Any insights or experiences you could share would be greatly appreciated.
Thank you.
Relevant answer
Answer
Both methods are possible. In both cases, it is important to wash the cells to get rid of DMSO (cryoprotectant) which can interfere with RNA extraction. DMSO can slightly but significantly affect RNA structure.
If you plan to extract RNA immediately after thawing, then you may follow the protocol provided below.
1. Thaw the frozen human T cells in less than 2 mins in a 37°C water bath.
2. The thawed cell suspension may be quickly transferred to 10 mL chilled RPMI 1640 medium and centrifuged at room temperature at 400 × g for 10 minutes.
3. The supernatant may be removed, and the cells may be washed once with 10 mL of RPMI 1640 at room temperature and then centrifuged at 400 × g for 10 minutes, also at room temperature.
4. The supernatant may be completely removed, and cells may be subsequently lysed in TRIzol reagent.
I would prefer to culture these cells for 1-2 passages in complete media supplemented with 100 IU of IL-2 and then proceed with RNA extraction because cultured cells provide a more homogeneous population of cells. Moreover, cultured cells will have a faster growth rate, which is linked to protein synthesis. This results in more ribosomes in cultured cells which means more total RNA. After harvesting the cells, perform RNA isolation as soon as possible under cold conditions.
Best.
  • asked a question related to T Lymphocytes
Question
2 answers
kindly refer the protocol of that experiment
Relevant answer
Answer
Here is a simplified outline of the ELISPOT assay protocol for T cell activation:
Materials Needed:
  • ELISPOT plates pre-coated with capture antibodies specific to the cytokine of interest (e.g., IFN-γ, IL-2, TNF-α)
  • Antigen-specific stimulus (peptides, proteins, or infected cells)
  • PBMCs (Peripheral Blood Mononuclear Cells) or purified T cells
  • Culture medium (e.g., RPMI-1640 with 10% FBS)
  • Biotinylated detection antibodies specific to the cytokine of interest
  • Streptavidin-conjugated enzyme (e.g., HRP or AP)
  • Substrate for the enzyme (e.g., TMB for HRP)
  • Stop solution (e.g., 1M H2SO4 for TMB)
  • Plate reader or ELISPOT reader for analysis
Protocol:
  1. Plate Preparation:Thaw ELISPOT plates and allow them to come to room temperature. Remove the plates from the plate sealer and place them in a sterile environment.
  2. Cell Preparation:Isolate PBMCs or purify T cells from blood or tissue samples. Count the cells and adjust the concentration for the assay.
  3. Cell Stimulation:Add the prepared cells to the wells of the ELISPOT plate, along with the antigen-specific stimulators or controls (e.g., mitogens, anti-CD3/CD28 beads). Incubate the plate at 37°C with 5% CO2 for a specific period (usually 16-24 hours).
  4. Washing:After incubation, aspirate the cell culture medium and wash the plate with washing buffer (PBS or similar) to remove unbound cells and debris.
  5. Detection Antibody Addition:Add biotinylated detection antibodies specific to the cytokine of interest. Incubate the plate for a defined period (usually 1-2 hours).
  6. Washing:Wash the plate to remove unbound detection antibodies.
  7. Streptavidin-Enzyme Addition:Add streptavidin-conjugated enzyme to the wells. Incubate the plate for a defined period (usually 1 hour).
  8. Washing:Wash the plate to remove unbound streptavidin-enzyme.
  9. Substrate Development:Add the substrate solution that reacts with the enzyme to produce a colored product. Incubate the plate until spots develop, but do not allow the reaction to proceed too long to avoid background.
  10. Stopping the Reaction:Stop the reaction by adding a stop solution, which will halt the color development.
  11. Analysis:Use an ELISPOT reader or a plate reader with appropriate software to analyze the spots, which correspond to individual secreting cells.
  12. Data Interpretation:Calculate the number of spot-forming cells (SFCs) per million cells and analyze the data in the context of your experiment.
For detailed protocols, always refer to the manufacturer’s instructions for the specific ELISPOT kit you are using, as there may be variations in the process or reagents required.
  • asked a question related to T Lymphocytes
Question
3 answers
I'm looking for protocols/sources that provide information about how to maximize the isolation of membrane bound proteins and general protein yield of unstimulated primary CD4+ T-cells. I have used RIPA and other ThermoScientific specialized protein lysis products and I have not succeeded.
These cells are isolated from fresh PBMCs.
My ultimate goal is to use Western Blot and ELISA as my protein assays.
Any suggestion is welcome. Thanks!
Relevant answer
Answer
Maria,
The Mem-PER™ Plus Membrane Protein Extraction Kit from Thermo Fisher utilizes CHAPS as a detergent in its membrane solubilizing mixture (verified in its SDS documentation). So, I guess, to isolate membrane-bound proteins, you can first lyse the cells using a mild detergent to solubilize cytosolic proteins, and then add a buffer based on CAPS to extract the membrane proteins effectively.
  • asked a question related to T Lymphocytes
Question
2 answers
Some time ago, I wanted to perform immunofluorescence on the S protein of mouse CD4 T cells using a Leica super-resolution microscope. I fixed with 4% paraformaldehyde, then added it to the well plate that had been coated with 0.1mg/ml poly-L-lysine, and then proceeded with the routine IF operation. However, under the microscope, there were many fluorescent particles in the background, and different focal planes showed different results (for example, the S protein was inside the nucleus, and after adjusting the focal plane, it appeared around the nucleus).
Relevant answer
Answer
Thank you for your response, but I don't think it could be mycoplasma contamination. Since I have already performed DAPI staining, and the fluorescent particles are from the staining of another protein. For the suspension cells' immunofluorescence, I think the main concern is how to naturally adhere to the wall while reducing background noise.@Rustem E Uzbekov
  • asked a question related to T Lymphocytes
Question
4 answers
I'm stimulating CD4+ T cells for 3 and 5 days with plate-bound CD3 antibody, soluble CD28 antibody, and LPS. I want to measure intracellular cytokine levels on days 3 and 5 (IL4, IFNγ, IL10, and IL17A) via intracellular staining and flow cytometry. When should I add brefeldin A to my cells in order to detect intracellular cytokines? 4 hours before analysis? 12 hours? Any help would be appreciated.
P.S. I've already analyzed T cells stimulated for 3 days for IL17A. I added brefeldin A 4 hours before analyzing the cells, but I didn't see any IL17A+ T cells. This is making me worry that perhaps I didn't add BFA add the optimal timepoint.
Relevant answer
Answer
Thomas Ching-Jen Tan This is exactly the kind of information I was looking for. Thank you! I'll try stimulating for 48 hours and then restimulating my CD4 T cells after their expansion.
  • asked a question related to T Lymphocytes
Question
4 answers
I saw kits for cell culture extracts but I didn't find any about assays directly with cells. Would it be possible to fix the T lymphocytes on the plate?
Relevant answer
Answer
Oh, right. I had seen that part already. Well, I hope it works!
Thank you very much! :)
  • asked a question related to T Lymphocytes
Question
3 answers
Hi, we are looking to activate in vivo mice reconstituted with OTI or OTII T-cells, and we are wondering if we should inject i.p or orally the OVA and with or without adjuvant. What's the best way to stimulate mucosal immunity? 
Relevant answer
Answer
Dear Colleague,
I hope this message finds you well. Activating OTI or OTII T-cells in vivo by ovalbumin (OVA) injection is a common method used in immunology research to study T-cell responses. Below is a detailed and logical protocol and discussion on this method, which includes practical considerations and references to ensure effective activation of these transgenic T-cells.
Protocol for In Vivo Activation of OTI/OTII T-Cells by OVA Injection
Background
OTI and OTII mice are transgenic models used to study CD8+ and CD4+ T-cell responses, respectively. OTI T-cells recognize the SIINFEKL peptide from OVA presented by MHC class I molecules, while OTII T-cells recognize the OVA 323-339 peptide presented by MHC class II molecules.
Materials
  1. OTI or OTII Transgenic Mice: Mice expressing T-cell receptors specific for OVA peptides.
  2. OVA Protein: Purified ovalbumin protein.
  3. Adjuvant (Optional): Such as Complete Freund’s Adjuvant (CFA) or Incomplete Freund’s Adjuvant (IFA) to enhance immune response.
  4. PBS (Phosphate-Buffered Saline): Sterile, for dissolving OVA.
  5. Needles and Syringes: Appropriate for mouse injection.
Protocol
  1. Preparation of OVA Solution:Dissolve OVA in sterile PBS to a final concentration of 1-5 mg/mL. If using an adjuvant, mix OVA with the adjuvant according to the manufacturer’s instructions.
  2. Injection: Subcutaneous Injection:Inject 100 µL of OVA solution (with or without adjuvant) subcutaneously at the base of the tail or other suitable sites. Intraperitoneal Injection:Inject 100-200 µL of OVA solution intraperitoneally. Intravenous Injection:Inject 100-200 µL of OVA solution intravenously via the tail vein.
  3. Monitoring and Sample Collection:Day 0: Perform the OVA injection. Day 3-7: Monitor the mice for signs of immune activation. Collect blood samples, spleen, and lymph nodes at appropriate time points post-injection to assess T-cell activation and proliferation.
  4. Analysis:Flow Cytometry: Analyze the activation and proliferation of OTI or OTII T-cells using flow cytometry. Stain for specific markers such as CD69, CD25, and proliferation markers like Ki-67 or CFSE labeling. ELISA/ELISPOT: Measure cytokine production (e.g., IFN-γ, IL-2) in serum or culture supernatants of isolated T-cells. Histology: Optionally, perform histological analysis on lymphoid organs to assess T-cell infiltration and activation.
Practical Considerations
  1. Adjuvant Use:Using an adjuvant like CFA or IFA can significantly enhance the immune response. However, it may also increase the variability in the response and potential side effects. Choose the adjuvant based on the specific experimental needs.
  2. Dose Optimization:Optimize the dose of OVA based on the experimental objectives and the responsiveness of the T-cell transgenic lines. Common doses range from 50 µg to 250 µg per mouse.
  3. Route of Administration:The route of OVA administration can influence the type and magnitude of the immune response. Subcutaneous and intraperitoneal injections are commonly used for robust responses, while intravenous injections are used for systemic activation.
  4. Timing:The peak of T-cell activation typically occurs between 3 to 7 days post-OVA injection. Plan your sample collection accordingly.
References and Further Reading
  • Harty, J.T., and Badovinac, V.P. (2008). "Shaping and reshaping CD8+ T-cell memory." Nature Reviews Immunology. 8(2): 107-119.
  • MacLeod, M.K.L., et al. (2011). "CD4 memory T cells: what are they and what can they do?" Semin Immunol. 23(1): 19-28.
By following this protocol and considering these practical points, you can successfully activate OTI or OTII T-cells in vivo using OVA injection, providing valuable insights into T-cell responses and immunological mechanisms.
Should you have any further questions or require additional assistance, please feel free to reach out.
Best regards,
This protocol list might provide further insights to address this issue.
  • asked a question related to T Lymphocytes
Question
3 answers
Hi! For reprogramming PBMCs into iPSCs, I understand that you first must obtain the PBMCs by a density gradient, such as Ficoll-Paque, and then you have a product of primarily lymphocytes with various cell types (T cells, B cells, etc.). I was wondering if it is known which cell types in particular are ultimately the ones that reprogram? And why during the expansion process of the PBMCs using the CytoTune kit do I not have to add some type of antibody to create T cell activation... or is that activation occurring from a component in the media that is proprietary and unknown? Hope this makes sense :)
I was asked this during my preliminary exam and I told the committee member that only cytokines are listed as an addition in the media, but no antibody-- this leads me to think that T cells are not the target for reprogramming. I've gone down a rabbit hole in the literature and only came out more confused.
Relevant answer
Answer
Hello to anyone seeing this follow up! Areeb Iqbal I personally reached out to ThermoFisher with this question and the Tech Specialist responded, "With this kit, because of the varying cell populations in PBMC samples, it is not possible to select a particular cell type to reprogram. We cannot say for certain which cell population is being reprogrammed. There is no antibody component dedicated in this kit as the T cells are not the primary target in the protocol"
My initial observation/answer was correct that T cells are not the target. It is very interesting (and possibly concerning) that we do not know which cell populations are reprogrammed. The specialist did add that if one wishes to specifically reprogram T cells that the newest CytoTune 2.1 kit has a section dedicated to reprogramming CD34+ cells at a higher efficiency
  • asked a question related to T Lymphocytes
Question
1 answer
Hi,
Does anyone have experience and success of isolating, culturing and stimulating hamster splenocytes for T-cell analysis (FACS and ELISPOT)? I am currently using a protocol that we routinely use for mouse splenocytes which gives good fresh and post-thaw cell viability (>70%).
Our mouse splenocytes are initially cultured and rested overnight in RPMI, 10% FBS, P/S, L-Glutamine and HEPES. For stimulation cells are resuspended in this media with the addition of IL-2 and Beta-mercaptoethanol and we have had no issues.
For hamster splenocytes however (using the same media and protocols for mouse splenocytes), we have been getting cell viabilities of around 50% which drops further after stimulating. Does a different culture media need to be used for hamster splenocytes? I found one paper that said RPMI was the best media, but haven't found any other publications that describe their isolation and culture of hamster splenocytes.
Any knowledge and tips on this would be gratefully received... Thanks!
Kind regards,
Lauren
Relevant answer
Answer
Hi Lauren Maskell,
For hamster T cells, I would recommend X-Vivo media. Please find the reference attached, it worked for me.
  • asked a question related to T Lymphocytes
Question
2 answers
I am attempting to culture tissue resident T cells (TRM) derived from fresh intestinal tissue for up to six days. I am finding that the viability of the T cells is low at D0, and a very small fraction of viably CD45+CD3+ cells remain at days 5 and 6 (less than 1% of all cells) as evaluated via flow cytometry. I conduct the same protocol on blood simultaneously, and viability in the blood is not an issue, and these T cells survive beautifully.
I did a double negative selection to remove epithelial cells, red blood cells, and granulocytes, and enrich for CD3+ cells. For my culture media, I use ImmunoCult T cell Expansion Media supplemented with PenStrep, FBS, IL-2, IL-7, and IL-15.
I am wondering if anyone has had success keeping TRM viable in culture? My next logical step will be to FACS sort for T cells rather than a bead enrichment, as I feel that dead cells and epithelial cells are still getting through the bead enrichment (this is supported by cells detected in my flow dump channel) and may be contributing to cell death. I am also considering adding TGF beta to my culture media. Any other suggestions would be appreciated!
Relevant answer
Answer
Claudia Aiello, this is what i do everyday so whatever i suggest here should work for you today and for many years as longs as you are working on Memory T cells.
Maintaining tissue resident memory T cells (TRM) derived from fresh intestinal tissue in culture can be challenging due to their specialized nature and the unique environment they require. Here are several suggestions to improve the viability and maintenance of TRM in culture:
Optimization Steps:
  1. Tissue Preparation and Digestion: Gentle Dissociation: Ensure the tissue dissociation process is gentle enough to preserve cell viability. Overly aggressive mechanical or enzymatic dissociation can damage the cells. Enzyme Cocktail: Optimize the enzyme cocktail used for tissue digestion. Some protocols use collagenase IV and DNase I, but the concentration and duration may need fine-tuning.
  2. Culture Conditions: Oxygen Levels: Mimic the hypoxic conditions of the intestinal environment by culturing cells under low oxygen conditions (e.g., 1-5% O2). Nutrients and Cytokines: Ensure the culture media is well-supplemented. You are already using ImmunoCult T cell Expansion Media with PenStrep, FBS, IL-2, IL-7, and IL-15, which is good. Consider adding other factors like TGF-β to help maintain TRM phenotype and function. Co-Culture Systems: Consider co-culturing TRM with other cells from the intestinal microenvironment, such as stromal cells or epithelial cells, to provide necessary survival signals.
  3. Survival Factors and Inhibitors: Inhibitors of Apoptosis: Adding inhibitors of apoptosis, such as Z-VAD-FMK, may help increase cell viability. Anti-inflammatory Agents: Using agents to reduce stress-induced inflammation, such as antioxidants or anti-inflammatory cytokines, could help.
  4. Cell Density: Optimal Seeding Density: Ensure you are seeding cells at an optimal density. Too low a density can result in poor survival due to lack of cell-cell interactions.
  5. Matrix and Scaffolds: Extracellular Matrix (ECM) Components: Using ECM components like Matrigel, collagen, or fibronectin can provide a more natural environment for TRM. 3D Culture Systems: Consider using 3D culture systems or organoid cultures to better mimic the tissue architecture.
Potential Adjustments in Protocol:
  1. Modify Enzyme Digestion: Ensure a balanced concentration of collagenase and DNase to avoid over-digestion. Use lower concentrations and shorter digestion times to minimize cell stress and death.
  2. Adjust Culture Media Composition: Continue using ImmunoCult T cell Expansion Media but consider adjusting the concentrations of IL-2, IL-7, and IL-15. Add TGF-β to help maintain TRM identity.
  3. Incorporate Anti-Apoptotic Agents: Include Z-VAD-FMK or other caspase inhibitors to prevent apoptosis during initial culture phases.
  4. Evaluate Oxygen Levels: Cultivate cells under hypoxic conditions (1-5% O2) to mimic the intestinal environment.
  5. Utilize Co-Culture Systems: Include stromal or epithelial cells in your culture to provide supportive signals. Use transwell inserts to separate but allow communication between cell types.
  6. Matrix and Scaffold Use: Utilize Matrigel or collagen-coated plates to provide an ECM-like environment. Consider 3D culture systems or organoids for a more natural environment.
Example Protocol Adjustment:
Day 0: Tissue Preparation and Initial Culture
  1. Digest intestinal tissue gently with optimized collagenase IV and DNase I concentrations.
  2. Perform double negative selection to remove unwanted cells and enrich for CD3+ cells.
  3. Plate cells in ImmunoCult T cell Expansion Media supplemented with PenStrep, 10% FBS, 20 ng/mL IL-2, 10 ng/mL IL-7, 10 ng/mL IL-15, and 1 ng/mL TGF-β.
  4. Culture under hypoxic conditions (2-5% O2).
Day 1-6: Culture Maintenance
  1. Refresh media every 48-72 hours with fresh cytokines and supplements.
  2. Monitor cell viability daily via flow cytometry.
  3. Adjust cell density by splitting or concentrating cells as needed.
  4. Optionally, incorporate ECM components or co-culture systems.
By optimizing these factors, you can enhance the viability and maintenance of intestinal TRM cells in culture.
Best of Luck!
  • asked a question related to T Lymphocytes
Question
2 answers
Hi,
I'm analyzing some bulk RNAseq data from T cells under different conditions, and based on the RNAseq data, condition A shows higher expression of genes associated with effector functions compared to B; however, in my cell culture data, T cells under condition B showed superior functions.
In this case, how should I interpret the data as a whole story?
Thank you!
Relevant answer
Answer
Can Justin Kiessling Hi Can, thank you for the input! Yes we have done pathway analysis and DEGs analysis. Sorry for not making this clear. My question is more about how people interpret or present opposite data between their RNAseq and cell assays for publications.
  • asked a question related to T Lymphocytes
Question
1 answer
I want to detect the T cell differential when it co-culture with dendritic cells with the presence of OVA
In some research, immature BMDC co-culture anti-CD3、anti-CD28 stimulated naive CD4+T cell from wild type mice, and most of research use OT-II naive CD4+T cell, why OT-II naive CD4+T cell do not need stimulation of anti-CD3、anti-CD28 ?
Relevant answer
Answer
Did not understand your question.
  • asked a question related to T Lymphocytes
Question
2 answers
Hi, scholars.
I am planning to conduct mouse neutrophil and T cell co-culture in Vitro and observe the effect of neutrophils on T cells.
I don't have any protocol. Could anyone provide me protocol and the reagents such as do I need to add any recombinant cytokines or peptide or anti-CD3 and CD28 to the culture medium. How long should I culture the T cells and neutrophils to T cell ratio.
Thank you.
Relevant answer
Thank you so much for your recommendations.
After isolating neutrophils, I would like to know know how to set up neutrophil and T cells co-culture methods. Do we need to add any recombinant cytokines, chemokines or Anti-CD3 and CD28 to the Neutrophil- T cell co-culture and how long should we stimulate and other parameters.
  • asked a question related to T Lymphocytes
Question
3 answers
Hello,
I am trying to transduce my CD4/CD8 T-cells with lentivector using retronectin from Takara (#T100B) at 50ug/ml, after they are activated by CD3/CD28 for 2 days.
The official protocol says that "it's important that the target cells be in logarithmic growth phase", but how this state may be monitored?
How to choose the "perfect moment" for transduction via retronectin?
Thanks in advance!
Relevant answer
Answer
Well said Aledjandrina
  • asked a question related to T Lymphocytes
Question
2 answers
After PBMC isolation, we are not able to activate and expand T cells.
Relevant answer
Answer
Dear Dr. Payal Agarwal
After isolation of PBMCs, you may activate the T cells in culture by adding mitogens (which are potent stimulators of T-cell activation and proliferation). For instance, PHA or concanavalin A which are mitogenic lectins are polyclonal activators, in that they activate lymphocytes, irrespective of their antigenic specificity.
Or
You may use monoclonal antibodies, for example, anti-CD3/CD28, which provides a co-stimulatory signal that engages the TCR, which can be used for antigen-induced activation.
Also, specific cytokines, such as interleukin-2 is added to culture to support T cell expansion and survival.
You may use 1-5 µg/ml of PHA along with 100-300 IU/mL of IL-2 to efficiently activate T cells and enhance T-cell cluster formation.
Regards,
Malcolm Nobre
  • asked a question related to T Lymphocytes
Question
1 answer
I am working on isolating Naive CD4+ T cells from human PBMCs using the Miltenyi AutoMacs. However, I am obtaining a higher percentage of Naive CD4+ T cells from the PBMCs than expected. I would like to confirm the identity of these isolated cells using transcriptional primers for mRNA gene expression analysis. Are there any specific primers that I can use for this confirmation?
Thanks!
Relevant answer
Answer
Naïve T cells typically express CD62L.
  • asked a question related to T Lymphocytes
Question
1 answer
Can I do flow cytometry analysis for CD3,4,8 positive T lymphocytes from the mouse spleen samples frozen in liquid nitrogen and stored at -80C?
Relevant answer
Answer
Difficult. Once frozen in liquid nitrogen, the surface proteins like CD3, CD4, CD8 etc lose their conformation. Since most of the antibodies recognize tertiary epitopes on their target antigens, it is nearly impossible to predict if such antibodies would work on these samples.
  • asked a question related to T Lymphocytes
Question
3 answers
Hi everyone
I produced a batch of virus , enriched it with centrifugation, and titrated it with T cells after 48h. For my experiments I want to use MOI 3 and that's equal to 1/12 dilution.
but at this dilution my cells will die after 5 days in cell culture( I use PBMC not sorted T cells), while untraduced control expanded 6 times during 5 days of stimulation. Until day 3 transduced cells are similar as untraduced cells. I tried up to 1/160 dilution but I still have very large cell death with this dilution!
Do you have any idea what is the reason for this?
Thanks
Relevant answer
Answer
Thank you for additional info Reza.
Decreasing viral titer from 1/160 to 1/320 does not seem to help your Lymphocyte count and transduction efficiency drops from 56% to 40%.
It will be interesting to see if diluting further will help. However, I am suspecting that your transduction efficiency will drop as well.
What is the end goal of your experiment? Are you trying to establish T cell population with CAR construct that can be used for future experiments/assays?
If you have access to FACS, maybe you can sort for transduced population and try and expand it.
Your transduction efficiency is highest at 1/40 dilution. Another approach would be to transduce at even higher titer( your transduction efficiency should increase at least until your cells start to die), observe until cells start to die, check transduction efficiency, sort and expand.
I would definitely try and change medium after 24 hrs and see if that helps.
Transductions are tricky. Lots of optimization needed until you get to finish line.
  • asked a question related to T Lymphocytes
Question
3 answers
Hi everyone,
I'm going to generate CAR-T cells starting with mouse CD3+ T cells. I isolated mouse CD3+ T cells using Miltenyi Pan T cell isolation kit. I seeded cells 1millon/well in 24 well plate precoated with 1ug/ml antiCD3 and 2ug/ml antiCD28. Cells were culture in the presence of 50IU/ml rhIL-2. However, only 20% of the cells were alive after 48h culture. Not a lot of cells became bigger, and I didn't see clusters forming. My question is that is it because of not sufficient TCR stimulation or AICD? I'm using RPMI supplement with PS, Glutamax, sodium pyruvate, 10% FBS, b-Me. Thank you in advance!
Relevant answer
Answer
Hi Jian,
Keep the anti-CD3 plate-bound at 1ug/ml and try using soluble anti-CD28 instead of plate-bound. You can also increase the concentration of anti-CD28 up to 5ug/ml.
Check this protocol:
I hope this helps.
  • asked a question related to T Lymphocytes
Question
3 answers
Kindly guide me if any suitable protocols are there to study the interaction
Relevant answer
Answer
No, I am working on a cell culture model
  • asked a question related to T Lymphocytes
Question
3 answers
Hi everyone,
I am staining leukocytes isolated from mouse kidneys in flow cytometry. I stimulated the cells with PMA/Ionomycin + BFA for 4 hrs in T-cell medium (RPMI + Pen/Strep + 10 % FCS + 50 uM beta-mercaptoethanol) and stained them for surface markers, T-cell transcription factors and IFNg and IL17A.
When I plot the cytokine production (IFNg-BV711 vs IL17A-BV650) in CD4+ T cells, I noticed that beside my single-positive populations, there are events on a somewhat straight diagonal line that seem to be double-positive. There are some other events that are double-positive that are more scattered around, which is why I think the events on the diagonal could be a technical artifact (see attached plot).
I am also attaching my FMOs for IFNg-BV711 and IL17A-BV650 where these events are not present.
I'd highly appreciate your thoughts on this.
Thanks a lot,
Jasper
Relevant answer
Answer
That might be autofluorescent dead cells. You should add a viability stain so that you can exclude the dead cells. There are many amine binding alternative to chose from. You stain with the viability stain before continuing with surface staining, fixation and intracellular staining. ThermoFisher have many fixable viability stains from eBiosciences, Biolegend have their Zombie Fixable viability kits and BD Biosciences have some too.
  • asked a question related to T Lymphocytes
Question
1 answer
I am looking at CD4 T cell populations in B6 mice at 42dpi with influenza B virus. I do perform CD45 IV labeling just before tissue harvest. Now I am running my samples on the 5L Cytek Aurora and I see this weird distribution of CD4 staining where it looks like there are two distinct populations of CD4 (see attached image). The CD4hi population (on the far right) is primarily IV protected and the CD4lo population is primarily IV labeled.
I also stain mLN, cLN, pLN and Spleen and they all look normal. This issue appears to be exclusive to the lung
Has anyone else seen this? I have been searching in the literature but haven't found anything helpful.
Thanks!
Relevant answer
Answer
This CD4hi population is mostly antigen experienced (CD44+). You can also stain for CD44 and CD62L to distinguish naive vs antigen experience CD4hiD44hi CD4T cells.
  • asked a question related to T Lymphocytes
Question
3 answers
I need B3Z T cell hybridoma in my experiment. It is not commercially available. Can someone share some with me? Thanks very much!
Relevant answer
Answer
Dear Dr. Chengsong Yan
You may contact Prof. Etienne Gagnon at the Université de Montréal, Institute for Research in Immunology and Cancer, Canada.
Please refer to the link below for contact information.
Best.
  • asked a question related to T Lymphocytes
Question
1 answer
Kindly, explain
Relevant answer
Answer
Helper T cells do not destroy infected cells directly, as opposed to the action, enacted by cytotoxic T cells. They can assist cytotoxic T cells and macrophages in inactivating the infected cells, and stimulate the secretion of antibodies by B cells. Helper T cells are attacked through interactions with antigen presenting cells , such as macrophages.
  • asked a question related to T Lymphocytes
Question
1 answer
Hello everyine,
Does anybody have a proof (a review or a scietific paper) that indicates if T cells from transgenic mices OT-1 and OT-2 express CD154 on their surface?
I couldnt find the answer on pubmed,
Thank you in advance,
Relevant answer
Answer
Both OT1 and OT2 cells, subsets of CD8+ and CD4+ T cells respectively, can express CD154 upon activation. CD154, also known as CD40 ligand, is crucial for T cell activation and interaction with other immune cells, facilitating processes like T-B cell collaboration and enhancing antigen-presenting cell function. Therefore, CD154 expression on OT1 and OT2 cells plays a significant role in their immunological response.
  • asked a question related to T Lymphocytes
Question
6 answers
What is the best serotype of AAV for infection/transduction of mouse or human T cells?
Relevant answer
Answer
Transduction of T cells with adeno-associated virus (AAV) vectors involves introducing a gene of interest into T cells for various therapeutic purposes. This process includes selecting an appropriate AAV vector, cloning the gene of interest into the vector, producing recombinant AAV, transducing T cells ex vivo or in vivo, culturing and expanding transduced T cells, and applying them for specific therapeutic purposes such as cancer immunotherapy or gene therapy for genetic diseases. Monitoring and evaluation are crucial for assessing safety, efficacy, and potential side effects.
  • asked a question related to T Lymphocytes
Question
2 answers
Dear All,
I've been working on differentiating monocytes to dendritic cells (DCs) in vitro using a 24-well TC-treated plate from Corning. Here's my current protocol: I place 2 Million PBMCs in each well, and after one day, when monocytes should be adherent, I carefully remove the supernatant and add RPMI with IL-4 and GM-CSF. After seven days, when I inspect the cells under a microscope, I observe that the Dendritics are not fully formed, and the cells appear smaller than expected. Additionally, they are not fully adherent; if I attempt to wash them, most of them detach. I also notice the presence of other immune cells, possibly alpha-beta T cells, which are similar in size.
I've attempted monocyte purification, but previous method seems to result in more dendritic cells.
Any suggestions, experiences, or recommendations on how I can optimize the purification and differentiation of my DCs would be greatly appreciated.
Thank you in advance.
Relevant answer
Answer
Optimizing the purification and differentiation of dendritic cells (DCs) in vitro is crucial for obtaining a homogeneous and functional population for research or therapeutic purposes. Here's a step-by-step guide to optimizing this process:
1. Source Material Selection: Choose PBMCs, bone marrow, or umbilical cord blood based on availability and experimental needs.
2. Isolation of Precursor Cells: Use techniques like density gradient centrifugation or magnetic bead separation with sterile protocols.
3. Differentiation Protocol Optimization: Cultivate precursor cells with specific cytokines and growth factors, adjusting concentrations and timing for optimal differentiation. Monitor differentiation using flow cytometry.
4. Maturation Induction: Stimulate immature DCs with appropriate stimuli like Toll-like receptor agonists or cytokines, optimizing concentrations and duration.
5. Culture Conditions Optimization: Maintain DC cultures in optimized media with proper supplements, adjusting temperature, pH, oxygen levels, and cell density as needed. Consider using feeder cells or specialized systems.
6. Quality Control and Characterization: Perform thorough phenotypic and functional characterization using flow cytometry and functional assays to ensure purity, phenotype, and functionality of generated DCs.
7. Cryopreservation Optimization: Develop optimized cryopreservation protocols for long-term storage, ensuring viability and functionality post-thawing.
  • asked a question related to T Lymphocytes
Question
5 answers
Activation of naive T cells generally requires antigen to be presented by dendritic cells in lymph nodes. Activation of naive B cells generally requires opsonized antigen to be displayed by follicular dendritic cells in lymph nodes.
Thus, it seems that dendritic cells and complement (innate immune system) need to recognize a pathogen before an adaptive immune response can be initiated. Is this always the case?
Relevant answer
Answer
Yes, B and T cells can be raised against pathogens that may not have been initially detected by the innate immune system. The adaptive immune system, comprising B and T cells, is adept at recognizing specific antigens presented by pathogens, even if they initially evade detection by the innate immune system. Once activated, B cells differentiate into plasma cells, producing antibodies targeting the pathogen, while T cells undergo clonal expansion and differentiate into various effector cell types. This adaptive immune response, along with the generation of memory B and T cells, contributes to long-lasting immunity against pathogens, irrespective of their initial evasion of the innate immune system.
  • asked a question related to T Lymphocytes
Question
3 answers
When we used LNP to deliver GFP mRNA to Jurkat cells, the efficiency was as high as 90%. However, when we delivered GFP mRNA to T cells, we failed, with an efficiency of 0.5-0.6%. Could anyone help us? Thanks a lot!
Relevant answer
Answer
Thanks for your suggestion. Because we made the LNP composition for the first time for T cells, we are afraid there are some tips that we ignored. For example, we used 1640 medium and human serum to incubate the T cells. Thanks a lot!
  • asked a question related to T Lymphocytes
Question
3 answers
I used miltenyi whole blood CD3 micro beads to separate the T cells from whole human blood using the automacs seperator. Usually after the separation is done by the machine, there is a clear T cell isolate. Yesterday I ran the machine twice and the isolate had brown coloured sediments at the bottom both the times—probably micro beads. I have been using the same settings for a long period with no issues. Has anyone encountered this before and can someone please help troubleshoot? is this an issue with the beads or the column or something with the setting?
Relevant answer
Answer
Thanks Fahad!
I vortexed the beads and the sediments were far less. Probably it could be related to the beads. I ran the buffer one with possel (also prepared a new one), it had no sediment. So unlikely related to buffer turbidity, I guess?
I was able to see the T cells under the cell counter. However it did have big chunks of beads as well.
  • asked a question related to T Lymphocytes
Question
2 answers
We are about to initiate #scRNAseq on some T-cell types. Back to literature, I found a wide diversity in the counts of the anlaysed cells used for the method (1K - 25K cells). I would really be happy to receive experts suggestions and hints regarding this problem.
Relevant answer
Answer
This is both a technical and practical question.
If you are using any method that is based on distributions of cells (for example 10X), then what you do during analysis is essentially that you put a certain number of beads (cells) into urns (droplets) and you like to avoid getting two cells in the same well. If you add around 5000 cells you get around 5% of these as doublets (i.e. 250). If you add less - lower proportion of doublets but less events.
The second question is the number of cells needed for meaningful analysis. Here the question is rather how many cells there is in each subgroup (i.e. how many of your cells are Th2 cells). You usually would like to have at least 50-100 "good" cells in a group to analyse to get meaningful information on expression of rare transcripts (since you will not see the transcript in all cells). This also means that if you use a method that give you more transcripts per cell, you may get away with fewer cells.
  • asked a question related to T Lymphocytes
Question
2 answers
I am looking into selecting T cells with microbeads for isolation and subsequent adoptive transfer in mice. Before labeling with microbeads, I usually block Fc receptors to ensure a more specific binding of antibodies. If I block Fc receptors, do magnetic selection, and then do adoptive transfer, will the fact that the Fc receptors are block affect anything in vivo (e.g. proper T cell function in vivo)?
Relevant answer
Answer
Thank you Malcolm Nobre for the information and paper. I knew some of these aspects of the immune system but overall it seems that blocking Fc receptors on T cells likely won't affect how they operate once transferred into mice. It seems Fc receptors are only present on T cells after they become activated. I'm not relying on T cell FcRs to function in the 'adopted' mice. If anything, blocking FcRs on T cells may even help me out by preventing NK cells or macrophages in the 'adopted' mouse from recognizing the FcRs and destroying the T cells.
  • asked a question related to T Lymphocytes
Question
2 answers
Hi everyone!
I am performing an assay to evaluate CD107a production by CD4+ T cells using Flow Cytometry. Currently, I am stimulating a suspension of tonsillar cells with OKT3 only at 37°C for 3 hours. However, upon analyzing the results, I found that the signal from the unstimulated cells (basal) and stimulated cells are the same (attached is a picture of the corresponding histograms analyzed by FlowJo). Therefore, I think that the stimulation with OKT3 is not effective. I have read that cells can also be stimulated with CD28 in addition to OKT3. Does anyone have experience with this assay that can provide guidance?
Thank you
Relevant answer
Answer
Be sure to use antibody coated plates or beads for stimulation. Soluble antibodies are not efficient for stimulation (other than for whole blood). Staphylococcal enterotoxin b is also an option, but only a small percent of T cells (in PBMCs) is activated.
  • asked a question related to T Lymphocytes
Question
1 answer
I would like to know whether B cell respond and bind to antigenic viral protein and further show through MHC which can produce different markers on each developmental stage of B and T cells?
Relevant answer
Answer
The idea of infecting or stimulating viral proteins into the developmental stages of B and T cells involves manipulating the immune system to enhance its response to specific antigens. While this concept has been explored in various contexts, it's crucial to note that intentionally infecting cells with live viruses may raise ethical and safety concerns. However, there are alternative approaches, such as using viral proteins or mimics, that can stimulate B and T cell responses without the associated risks.
Research in this area primarily focuses on understanding the immune system's responses at different developmental stages of B and T cells. Let's break down the key components and explore relevant information:
  1. Stimulation of B Cells:Antigen Recognition: B cells recognize antigens through their B cell receptors (BCRs). The BCRs specifically bind to antigens, leading to B cell activation. Antigen Presentation: Activated B cells process and present antigenic fragments on major histocompatibility complex class II (MHC-II) molecules. MHC-II and Markers: MHC-II presentation by B cells can influence the immune response. Differentiation markers such as CD19, CD20, and CD22 are expressed at various stages of B cell development. References:Pulendran, B., & Ahmed, R. (2011). Immunological mechanisms of vaccination. Nature Immunology, 12(6), 509-517. Lanzavecchia, A., & Sallusto, F. (2001). Regulation of T cell immunity by dendritic cells. Cell, 106(3), 263-266.
  2. Stimulation of T Cells:Antigen Presentation by APCs: Antigen-presenting cells (APCs), including dendritic cells, process and present antigens on MHC molecules to activate T cells. Differentiation Markers: T cells express different surface markers during their development, such as CD4 and CD8. Helper T cells (CD4+) and cytotoxic T cells (CD8+) play distinct roles in the immune response. References: Janeway, C. A., Travers, P., Walport, M., & Shlomchik, M. J. (2001). Immunobiology: The Immune System in Health and Disease. 5th edition. Garland Science.
  3. Companies and Research Initiatives: Companies and research institutions worldwide are engaged in studying immune responses and developing novel vaccines. Examples include Moderna and Pfizer-BioNTech: These companies have developed mRNA vaccines, a cutting-edge technology that delivers viral protein instructions to cells, stimulating an immune response. Johnson & Johnson and AstraZeneca: These companies have developed viral vector-based vaccines, which use modified viruses to deliver antigenic material. National Institutes of Health (NIH) and World Health Organization (WHO): These organizations contribute significantly to global research on immunology and vaccine development. References:Moderna: Moderna. (n.d.). COVID-19 Vaccine Moderna. Pfizer-BioNTech: Pfizer-BioNTech. (n.d.). Comirnaty COVID-19 Vaccine. Johnson & Johnson: Johnson & Johnson. (n.d.). Janssen COVID-19 Vaccine. AstraZeneca: AstraZeneca. (n.d.). COVID-19 Vaccine AstraZeneca.
In conclusion, manipulating B and T cell responses through viral proteins is a complex area of research. While live virus infection may pose challenges, ongoing research by various companies and institutions focuses on safer methods, such as utilizing viral proteins or mimics, to elicit robust immune responses at different developmental stages of B and T cells.
  • asked a question related to T Lymphocytes
Question
1 answer
I am immunophenotyping PBMCs by flow cytometry using markers for T cells to analyse the different subsets (Naive, CM, EM and EMRA), and to measure senescent and exhausted t cells. I want to evaluate the effects of 2 different interventions on these cells, so in order to do the statistical analysis to compare pre and post intervention values and between groups values, what parameter should I use? frequencies of each population? MFI?
Thank you!
Relevant answer
Answer
Not sure if you can get MFI for subgroups but if so you could do a one way ANOVA of post - pre MFI across groups.
  • asked a question related to T Lymphocytes
Question
1 answer
We are interested in CD8+T lymphocytes form pancreas cancer patients. Is it possible to find a pancreatic cancer cell line with HLA class I molecules that could be recognised by CD8+T lymphocytes from an individual patient?
Relevant answer
Answer
There are a few human pancreatic cancer cell lines which could be used in the evaluation of CD8+ CTL function as per the paper attached below. This article may be helpful!
Regards,
Malcolm Nobre
  • asked a question related to T Lymphocytes
Question
2 answers
The treatment of A549 tumor cell lines by IFNb induces the expression of CMH-I and also PDL1. co-culture of A549 (pretreated with IFNb) with T cells leads to partial killing of A549. I was wondering if adding anti-PDL1 could increase the kiling of A549 cells by T cells.
Thanks for guidance
Relevant answer
Answer
Hello Monsif Bouaboula
Yes, you are right in your thinking.
Blocking the binding of PDL1 to PD1 with either anti-PDL1 or anti-PD1 will facilitate the T cells to kill A-549 tumor cells.
The PD1/PDL1 interaction inhibits T lymphocyte proliferation, survival and effector functions such as cytotoxicity and cytokine release.
So, you should add anti-PDL1 as it would increase the killing of A-549 tumor cells by T cells.
Best.
  • asked a question related to T Lymphocytes
Question
2 answers
Dear, In my experimental model I will administer a substance intraperitoneally and some time later I need to collect the T lymphocytes from the spleen for phenotypic characterization in order to evaluate the host's adaptive immune response. I need to know: i) on average, how long after administering the substance I should collect the spleen; ii) how to isolate T cells from spleen and, finally, which T lymphocyte activation surface markers I should use (in addition to CD8; CD4 and CD69).
Relevant answer
Answer
If you only want to look at activation of T cells directly by FACS (i.e. no plans to do T cell cultures) I would not do a purification of T cells (expensive, time consuming, potential loss of cells) and stain for CD3, (gd and ab T cells, NK T cells) and TCRab (if you want to focus on ab T cells only) and CD69 and CD25 markers. CD69 comes up after around 4 hours (and diminishes over time), CD25 after 16 to 24 hours. Other markers could be PD1, TIM3, cytokine receptors, etc. It may be interesting to also look at T cells in the peritoneum (attracted by or activated by your substance). You can isolate them by euthanizing the animal and injection 10 ml of PBS i.p. with a fine gauge needle, massage the belly and recuperate the liquid wit a wider gauge needle.
  • asked a question related to T Lymphocytes
Question
4 answers
I am currently performing co-culture experiments with murine CD8 T cells isolated from mouse spleens and with skin cancer cells (PDV) in a 24-well plate. I first isolate the CD8 T cells from spleen which are around 70% alive at time of isolation, mix them together with CD3/CD28 T Cell activation beads to activate the CD8 T cells, and plate them 2x10^5 T cells on top of 2x10^5 skin cancer cells that were plated the night before. The cancer cells are treated with mitomycin C prior to plating the T cells in order to halt cancer cell proliferation. Then I let them incubate in a tissue culture incubator with standard parameters (37 degrees Celsius and 5% CO2) for 5 days. In addition to the wells where I co-culture the T cells with the plate cancer cells, I also plate some of the T cells with the activation beads in an empty well to act as a control. I then assess the viability of the T cells by staining with a live dead stain and running flow cytometry. However the results of the flow cytometry show show that most of my T cells are dead (<40% viability). The most problematic issue is that the T cell-only wells come up only 1% viability which render the rest of the experiment null since I would not have a T cell control to compare the T cell viability from the T cell/cancer cell co-culture wells.
The interesting observation is that the T cells co-cultured with cancer cells have greater viability compared to the control T cells cultured by themselves which makes me think that the cancer cells are stimulating the T cells and improving T cell viability that way. I was wondering if there are any adjustments I could make to improve the viability of my T cells especially for the T cells in the T cell only control wells?
Some adjustments I have made already:
1. Increase the speed of the T cell isolation from the spleen to improve baseline viability prior to seeding on the cancer cells
2. Utilize wide bore tips when pipetting T cells to decrease the shear force on the T cells
Thank you for any suggestions and apologies for the length of this question.
Relevant answer
Answer
Dear Matthew,
Your work seems interesting. Which type of cancer are you investigating? The results can be dependant on that too. What are the goals of your study?
Sincerely,
Amar, MSc in MLT, Researcher interested in breast cancer
  • asked a question related to T Lymphocytes
Question
5 answers
Usually I culture mouse T cell with RPMI media and the mouse EC cell lines(C166---adherent cells) always culture with DMEM. I want to establish a in-vitro transendothelial migration model that mouse T cells migrate through C166 monolayer. So I want to know if DMEM medium affect mouse T cells activity and function. Could I use DMEM medium to culture mouse T cells in order to adapt the DMEM culture environment .
Relevant answer
Answer
One thing that I can tell is that you can´t cultivate EC with RPMI. I did it in the co-culture and lost my cells.
  • asked a question related to T Lymphocytes
Question
1 answer
We are planning to check the level of phosphorylation of NF-KB in the CD4+ T cell population after activation with anti-CD3/CD28 and treatment for 15 minutes. However, I constantly see two fixed bands with MW around 65 and 25 KDa which might come from serum proteins but when we removed FBS from the media, they are still there. Since we're looking for p-NF-KB in 65 kDa size, how can I fix this issue?
Relevant answer
Answer
@Mehri,
The 25 KDa might be NFKB isoform due to alternative splicing. If you do not want the 25 KDa isoform, you should look for methods to prevent this alternative splicing.
  • asked a question related to T Lymphocytes
Question
1 answer
I work in a project where we need to knockout a gene at primary T cells targeting an exon that is shared between all variants. However, while the sgRNA design has been optimised ,we still see low KO efficiency. (Note: we are using RNP method and electroporation)
Relevant answer
Answer
The information above is not suffcient for trouble shooting. You may need a positive control to validate your protocol first.
  • asked a question related to T Lymphocytes
Question
1 answer
The untransduced T cells are produced by mock lentiviral transduction of human primary CD4+CD8+ T cells. These cells are subjected to comparable manipulations as CAR-T cells: activation, spinoculation (without lentivirus), and expansion. These T cells are meant to be negative controls in experiments using lentivirus-transduced primary CAR-T cells.
Why not to use Scramble or a vector without a construct? Why UTDs are used?
Relevant answer
Answer
Actually, since viral transduction may affect T cell function, you must always use an empty vector for the transduction of T cells and use it as negative control along with non-transduced T cells, and compare the results.
  • asked a question related to T Lymphocytes
Question
2 answers
I'm currently working with human primary T cells, isolated from whole blood that I get from my university's blood bank, and I'm trying to determine if my experimental treatment can enhance cytotoxicity. I'd like to run some type of in vitro killing assay but am struggling to find a good target cell for the cells that I work with.
In general, I use cells that are not CMV-positive. I've seen lots of literature using T cells from OVA mice and having the target cells pulsed with OVA peptide, but something like this isn't feasible with the cells that I have access to. Does anyone know if it's possible to run a killing assay of this type with run-of-the-mill human T cells? Is there a good target cell line that any human T cell with kill?
Thanks in advance!
Relevant answer
Answer
Check the old publications of Antonio Lanzavecchia and Federica Sallusto. They typically used tetanus antigen to check cytotoxic responses of human primary T cells (many people have somewhere in their live received a tetanus vaccine). You would need to use the B cells or moniocyte-derived dendritic cells from the donors to get the appropriate target cells (having the HLA antigens that match the restriction of the T cells). Again the work of Lanzavecchia provides protocols (usually GM-CSF +/- IL4 and optionally maturation with LPS).
  • asked a question related to T Lymphocytes
Question
2 answers
Does anyone have a protocol for measuring T lymphocyte activation, either by flow cytometry or by measuring cytokine production? I'm working with CAR-T lymphocytes and I want to see if incubating them with patient sera will activate them in a specific manner. Can you suggest different cytokines and activation markers?
Relevant answer
Answer
I briefly wanted to reach out concerning your inquiry.
For a detailed list of flow cytometry agents for the characterization of activation markers on the cell surface please consider the following paper from my old boss.
For quick insights into activation markers for cytotoxic T cells and a basic flow cytometry protocol, please consider:
For a comprehensive cytokine analysis (48plex with absolute quantification) use:
And for a detailed proteomic analysis (using cell culture supernatants or serum (prior to incubation)) please consider the T96 INF, IR and IO panels (albeit with relative quantification of expression) as per:
and more specifically used in the following papers:
I hope that helps.
All the best & good luck with your experiments,
Michael
  • asked a question related to T Lymphocytes
Question
1 answer
Hi- I would like to transiently deplete CD8 T-cells in vivo to allows allografts to establish, but am testing T-cell activation as a therapeutic modality, so need them to come back with appropriate timing. Does anyone have experience with re-population kinetics of T-cells after in vivo administration of mouse anti-CD8 mAb clone 53-6.7?
Relevant answer
Answer
Emily Girard do you find a solution? I'm looking for this also...
  • asked a question related to T Lymphocytes
Question
2 answers
I have attempted various transfection reagents including Lipo3000/Lipo2000/Hieff Trans™ Liposomal Transfection Reagent, both GAPDH positive control and custom siRNA targeting gene of interest at different concentrations (20nM, 40nM, 60nM) in a 24-well plate, FAM-NC, and time points (24h and 48h post-transfection) for numerous trials. However, none of these approaches yielded the expected results. Could it be that non-electroporation methods are not effective for Jurkat T cells? Or does anyone have a more effective and unique experimental protocol? I'm hoping to receive your guidance. Thank you.
Relevant answer
Answer
Yang 明明 您说的或是很重要的原因之一(印象中,siRNA的转染在一定浓度下可能不会触发该通路,当然也可能是我的认知有限),对于免疫或悬浮细胞,正如你说的电转、病毒转染是优选的方案。不过,电转对于经济实力不强的实验室,其成本是较为高昂的。
  • asked a question related to T Lymphocytes
Question
3 answers
I am trying to expand TH17 cells from Naive T cells for the first time. Can you suggest the best expansion kit available in the market to do the same?
Relevant answer
Answer
IL6, IL21, IL23, and TGF-β are the major signaling cytokines involved in Th17 cells differentiation, and retinoic acid receptor-related orphan receptor gamma-T (RORγt) is the master regulator. The differentiation process can be split into 3 stages,
The differentiation stage mediated by TGF-β and IL6,
The self-amplification stage mediated by IL21, and
The stabilization stage mediated by IL23.
If you are interested in mouse, then you may use the kit attached below. The Flow Cellect Mouse Th17 Differentiation Tool Kit Catalog No. FCIM025163 from Millipore.
For human, RnD systems used to provide the Human Th17 Cell Differentiation Kit which has been discontinued. See below.
Nevertheless, you could follow the protocol provided below for human Th17 cell differentiation.
1. You may purify naive CD4+CD45RA+ T cells from PBMCs using the Naive T Cell Isolation Kit (human).
2. You may stimulate the cells by using the T Cell Activation/ Expansion Kit, (human) which is based on MACSi bead particles loaded with the required antibodies.
3. You may culture the cells in the presence of the Th17-polarizing cytokines, like IL-1β (20 ng/mL), IL-6 (30 ng/mL), IL-23 (30 ng/mL), and TGF-β1 (2.25 ng/mL), in addition to anti-IFN-γ (1 µg/mL) and anti-IL-4 (2.5 µg/mL) antibodies. Culture the cells for 7 days at 37 °C in an atmosphere of 5% CO2, without any media exchange.
4. You may collect the cell culture supernatants, filter, and measure the content of IFN-γ, IL-4, IL-17, IL-22, by ELISA method.
For detailed protocol you may want to refer to the link below.
Best.
  • asked a question related to T Lymphocytes
Question
1 answer
In mouse SI-lamina propria T lymphocytes stimulation with PMA (20ng/mL) /Iono(1ug/mL) is not strongly inducing IFN-g after 6hrs. The previous results in our lab had 4-5% and I could have just 2% max, though the protocol and antibodies to stain everything is followed in same way! any suggestions or comments would be greatly appreciated.
Bref A (1ug/mL) after 2hrs of PMA7Iono.
Relevant answer
Answer
Good morning,
I'm having the same problem, did you get any idea on how could we enhace cytokine's production please ?
Thank you
  • asked a question related to T Lymphocytes
Question
5 answers
I want to deplete CD3 T cell from PBMC, how can I do that without magnetic bead separation?
Relevant answer
Answer
Hello,
High levels of anti-CD3 will likely just tolerize the T cells, not deplete them.
I was going to suggest FACS cell sorting but an alternative you could use is the old standby; stain the cells with anti-CD3 antibody of an isotype that fixes complement then expose the cell population to reconstituted rabbit complement which will lyse the vast majority of the CD3 expressing T cells.
However, you should do FACS analysis at least once to see that both your antibody and source of complement are functional and that the CD3+ve cells are truly depleted.
  • asked a question related to T Lymphocytes
Question
4 answers
I've been trying to activate and expand naive T cells that have previously been isolated from PBMCs with a pan-T cell isolation kit from Miltenyi and cryopreserved in 90% FBS 10% DMSO. I have decent viability post thaw >85% with ~10% loss in viability from the pre-freeze viability. However, over the 10 days that i'm expanding the T cells, I initially see good activation, but then the T cells start dying off and I end up with abysmal viability by day 10.
Here's the protocol i'm using:
I rapidly thaw the vial of T cells in the water bath and when the vial is almost completely thawed, add 1mL T cell media dropwise. I transfer the full volume to a 15mL tube with more T cell media dropwise, then spin at 300xg for 5 minutes. I activate the T cells in Miltenyi TexMACS medium supplemented with 300 IU/mL IL2 and CD3/CD38 Dynabeads at a 1:1 T cell:bead ratio. I plate the cells at 2 million/mL in a 24 well plate for the initial activation. I expand the T cells for 10 days, checking the viability every 2 days and replenishing media/cytokine if the media starts looking yellow, keeping T cells between 1.5-2 million/mL.
This protocol has worked very well for me from T cells isolated from freshly prepared PBMCs, but hasn't been working well with the cryopreserved T cells. I initially see very good clumps forming that get larger, but towards the second half of the 10 days the clumps don't get very large and the T cells start dying. Over 10 days I had less than a 2-fold expansion, whereas with fresh T cells I could get a 4-5 fold expansion over 10 days.
Does anyone have experience activating and expanding thawed naive T cells or have thoughts on why my T cells may be dying? Whats weird is that I've used the exact same vial of frozen naive T cells to generate CART cells using a 3 day Dynabead activation with IL7 & IL15 followed by viral spinoculation, and the viability of these CART cells is fine after a few days of expansion after spinoculation.
Relevant answer
Answer
Use monoclonal anti-CD3 antibodies and anti-CD28 antibodies to provide a co-stimulatory signal that engages the TCR which can be used for antigen-induced activation.
  • asked a question related to T Lymphocytes
Question
1 answer
Hi! Could someone help me to solve this problem?
I will coat the 6-well plate with anti-CD3 first. Then, add anti-CD28 into T cell culture and remove T cell culture into 6-well plate. However, Jurkat cells always form clumps. Do I need to split the T cells before adding anti-CD28 into individual cells? What should I do? Centrifuge the cell culture?
Besides, I will then test the CD69 and CD25 expressed on activated T cells by flow cytometry. In this test, I will add anti-CD69-FITC and anti-CD25-PE to the cell culture. Do I also need to centrifuge the T cells to split them from clumps?
Thank you in advance!
Relevant answer
Answer
I briefly wanted to reach out concerning your inquiry. Firstly, Jurkat T cells clump a lot (especially when re-stimulated). To that end I would suggest to spin them and gently resuspend them by pipetting up and down to get a single cell suspension.
Follow the extracellular staining protocol outlined here:
Please stain for live/ dead cells (in PBS) and then for your extracellular antibodies in FACS buffer (i.e. PBS + 0.5% BSA + 0.1 % NaAzide (optional for storage).
For a very basic protocol please refer to:
I hope that helps.
All the best & good luck with your experiments,
Michael
  • asked a question related to T Lymphocytes
Question
3 answers
A reviewer wants me to generate CD4Cre CD19Cre cKO mice to complement the individual Cre data in an initial submission. I think that breeding and genotyping here could be a long and painful process. Does anyone know of a Cre driver that is 'pan'-lymphocyte?
Many Thanks in advance
Relevant answer
Answer
Maybe the Vav-iCre strain (originally from the Kioussis lab) may help, pending on your experimental set-up.
For a characterization (of Cre expression) please see:
All the best & good luck with your experiment,
Michael
  • asked a question related to T Lymphocytes
Question
1 answer
The isolated T cells will be further activated and expanded in vitro for transduction (with chimeric antigen receptors). The ex vivo culturing will take about 2-3 weeks.
I know that for isolating rare cell populations (I.e. pDCs) it is recommended to pool spleens together to obtain sufficient numbers but not sure if the same can be done for mouse T cells. Would there be any concerns of cross-reactivity despite the cells coming from the same background (C57Bl6 in our case) only different individuals?
Relevant answer
Answer
When isolating mouse T cells, it is generally recommended to use spleens from individual mice rather than pooling them together. This is because T cell populations can vary among individuals, even within the same strain, due to genetic and environmental factors. Pooling spleens from different mice may introduce variability in the T cell populations, including differences in T cell receptor repertoires and activation states.
To obtain sufficient numbers of T cells for downstream applications, you can isolate T cells from multiple individual spleens separately and then combine the isolated T cells together after purification. This approach ensures that the T cell populations remain representative of each individual mouse, minimizing the potential for cross-reactivity or other unwanted effects.
By isolating T cells from individual spleens, you can also control the quality and purity of the T cell population, ensuring consistency in your experiments. Additionally, if any issues arise during the ex vivo culturing process, it allows for easier troubleshooting and identification of potential sources of variability.
In summary, it is generally recommended to isolate T cells from individual mouse spleens rather than pooling them together to maintain consistency and minimize potential issues related to cross-reactivity or variability in T cell populations.
  • asked a question related to T Lymphocytes
Question
3 answers
How many naïve T cells we can get from a C57BL/6J mouse spleen and lymph nodes? or in other word, what percentage of the cells from spleen and lymph nodes are naïve T cells?
Relevant answer
Answer
If you want to have an idea for absolute numbers and distribution, please check our paper on T cell development
We used C57BL/6J littermate controls in our experiments. Moreover, a FACS staining for CD62L and CD44 in the CD4/ CD8 compartment, with CD44 low CD62L high expressing T cells will be naive.
Please check Fig. 3 of the paper for more details.
All the best & kind regards,
Michael
  • asked a question related to T Lymphocytes
Question
4 answers
I am doing multiplex immunofluorescence assay on FFPE section. I used CD3 to identify T cells and observed that some of T cells stained with CD3 showed nuclear staining instead of membranous. I am not sure why the staining pattern is nuclear for CD3? is it possible to see nuclear staining with CD3?
Relevant answer
Answer
This depends on the type of cancer you are investigating and the tissue from which the FFPE sections are made. As mentioned, e.g. T-cell lymphomas show cytoplasmic CD3 staining.
Try to figure out in which tissue/cell type you see the cytoplasmic CD3 staining.
  • asked a question related to T Lymphocytes
Question
2 answers
Why is tetramer only used to test the interaction between T cell and peptide-MHC complex and not to test binding affinity between peptide and MHC?
Relevant answer
Answer
Major histocompatibility complex (MHC) antigens bind peptides of diverse sequences with high affinity. Both MHC class I and MHC class II molecules contain peptide-binding grooves formed by two α-helices and eight β-strands. In the peptide-binding groove, specific amino acids compose pockets that accommodate the corresponding side chains of the anchor residues of the presented peptides. Peptide-binding preferences exist among different alleles of both of MHC I and MHC II molecules, which are mainly dependent on amino acid polymorphisms in the peptide-binding grooves of MHC chains. They do this in order to generate maximal immunological protection by covering the spectrum of peptides that may be seen by a host over the course of its lifetime.
On the other hand, TCR (T cell receptor) has a low avidity and fast off-rates for MHC-peptide complexes. So, MHC-peptide tetrameric complexes (so-called MHC tetramers) have been introduced for the detection of antigen-specific T cells. MHC tetramers have increased avidity for their cognate TCRs and are successfully used to directly visualize antigen-specific T cells ex vivo. MHC tetramer technology is based on the ability of MHC-peptide complexes to recognize the antigen-specific T cells at a single cell level.
Hope this information is helpful!
Best.
  • asked a question related to T Lymphocytes
Question
5 answers
Hello, I isolate PMBCs from blood using Ficoll and plate the cells in a 96-well plate for different treatments for a few hours before T cell activation. At the end of the treatments I centrifuge the plate, discard media and use new media to pipette the cells several times and transfer to an anti CD3 coated 96 well plate for 3 days, new media is also supplemented with anti CD28 ab and IL2.
I can't seem to get the cells into the new plate and rarely get any cells in the plate after the 3 day incubation. I was under the impression that these cells detach easily with pipetting. Any suggestions?
Relevant answer
Answer
Kerry S Vistisen I tried to lower the g and doubled the amount I seeded, and it now looks like I was able to transfer a good amount. Thanks!
  • asked a question related to T Lymphocytes
Question
2 answers
First, we coated 96 well TC-treated plates with 5ug/ml anti-CD3 antibody (17A2, biolegend)
Then, we added Naive CD4+ CD25- CD45RB high T cells (500000) in each well after sorting through flow cytometry. Next, we used anti-CD28 antibody (soluble 2ug/ml, biolegend). Again, different cytokines such as 5ng/ml TGF-β, 20ng/ml IL-6, 10ug/ml anti-IL-4, 10ug/ml anti-IFN-gamma were added in each well. After 5 days, when we detecetd TH17 cells after, we found low ratio of IL17+ cells (1%-2%) and most of cells were dead (>80%). This is the main problem. Thats why we want to know which can cause this problem.
Relevant answer
Answer
Philippe August Robert Thank you sir for your kind response and suggestion
  • asked a question related to T Lymphocytes
Question
2 answers
Hi,
Does anybody know whether effector or memory T cells can de-differentiate into naive T cells, rather than just become exhausted or undergo apoptosis? Thanks
Relevant answer
Answer
Thanks Malcolm. Do you hapoen to know if memory T cells can ever fully revert back to naive T cells?
  • asked a question related to T Lymphocytes
Question
3 answers
Recently I’ve started seeing these clumps in my primary MSC flask (T175). I first noticed these compact clumps in a flask near 80% confluence but I’m also seeing it in less confluent flasks. The clumps vary in size. The medium is neither cloudy nor changing color. I’m using a basic growth media (DMEM, 10% FBS, and 1% antibiotic-antimycotic). When passaging I dissociate the cells using 0.25% trypsi-EDTA for 5 minutes. I’ve been washing the flasks with PBS + 3% antibiotic-antimycotic at media changes, but have not seen any change. Does this look like fungal contamination or could it be cellular contamination (for example, T cells or pluripotent cells clumping) or cellular debris? Whatever it is, it appears to sit a a level above the live, attached cells (with other dead cells).
Thank you!
Relevant answer
Answer
Thanks for the information. Since the cells are from passage 7-8 then I would say the clumps are definitely cell debris. I typically do not use MSCs after passage 6. Past passage 6 the cell morphology looks suspect, their growth slows down and you start to see a lot of floating cell debris compared to earlier passages. I just toss the flasks and break out new vials from LN2.
  • asked a question related to T Lymphocytes
Question
3 answers
I isolated CD3+ Cells from frozen PBMCs and then I seeded them in a 96-well plate in different conditions with some independent variables.
In this experiment, I need to incubate the plate for 7 days and then I do FACS analysis.
The problem is that after 1 week I lost around 70-80% of cells in each condition.
What should I do to lose a low number of cells during the incubation?
Relevant answer
Answer
Firstly, I isolate the CD3+ cells from PBMCs. Then I seed 200.000 cells/well.
In baseline condition only I have IL-2 and cell medium.
In the second and third condition I have , anti-CD8 and IL-2 and my independent variable.
Note: Before seeding I coat the plate (the wells that I need the activation of T cells) with 5 µg/ml anti-CD3 in PBS.
  • asked a question related to T Lymphocytes
Question
2 answers
Is it possible to transduce a human CAR into mouse T cells and have the mouse T cells function when the CAR binds it's antigen? I am thinking that if anything the singling domain of the CAR, as it is human, may be a problem for the mouse T cells.
Relevant answer
Answer
Thank you!
  • asked a question related to T Lymphocytes
Question
1 answer
Hello,
I have been trying to do a lentiviral transduction of mouse primary CD4+ T cells with little luck. We do not see any expression and cells begin to die out.
Current protocol:
Isolate CD4+ T cells, transduce on day 7 with spinoculation (1000G, 1hr)
Thank you!
Relevant answer
Answer
Hi Meisha,
Have you checked whether the cells survive and are sufficiently activated? Just wondering if you have an untransduced control that also starts to die out around the same time (in which case the problem can be with ex vivo culture).
@