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Stem Cell Biology - Science topic

All about stem cell biology! Stem Cell Protocols and Methods.
Questions related to Stem Cell Biology
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I'm just wondering if I need to change the media of my cells that are culturing in 5% O2 (hypoxic condition) in a hypoxic chamber aka a hypoxic glove box? Or can I just quickly do this in a normal incubator and return the cells to the hypoxic incubator?
It sounds like a lot of work if we need to get a hypoxic glove box so I'm just wondering if anyone has any experience in this who could give me some insight?
Thank you
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What is Your aim? What is Your hypoxia level necessary? 10%, 5%, 1%? 0,1% of O2?
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I am wondering if there are any commercially available fluorescent stains for live imaging of astrocytes derived from hiPSCs. We are co-culturing neurons and astrocytes and would like to stain the live cells to determine the change in their populations over time.
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May consider using Permai fluorescence dye.
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I am planning to expand my business and hope to learn some industry information from you in your area. Or share some resources and explore potential cooperation opportunities.
#Medicine #Biotechnology #Doctor#Research
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Yes, I am interested to work with you.
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As we look towards a more sustainable and ethical future, one of the most exciting developments in the world of food is cultivated meat. 🌎🍖
🔬 What is Cultivated Meat? Cultivated meat, also known as lab-grown or cell-based meat, is produced by culturing animal cells in a controlled environment, without the need to raise and slaughter animals. It offers the promise of a more sustainable, humane, and environmentally friendly way to meet our growing global demand for meat.
🌍 Why is it Important?
  • Sustainability: Did you know that the meat industry contributes to approximately 15% of global greenhouse gas emissions annually? As meat consumption continues to rise, so does its impact on the environment. Cultivated meat requires significantly fewer resources, such as land and water, and produces up to 90% less greenhouse gas emissions compared to traditional livestock farming.
  • Animal Welfare: It eliminates the need for factory farming, where millions of animals endure harsh conditions. By embracing cultivated meat, we can reduce animal suffering on an unprecedented scale.
  • Food Security: With the world's population expected to reach 9 billion by 2050, meat consumption is projected to double. Cultivated meat could play a crucial role in ensuring food security while reducing the pressure on our planet's resources.
💲 Price Comparison: Currently, cultivated meat is more expensive to produce than conventionally farmed meat, with prices ranging from approximately $50 to $150 per kilogram. In contrast, the cost of traditional meat production can vary widely but is generally lower.
📈 Future Price Trends: The future of cultivated meat pricing is promising. As technology advances and economies of scale come into play, we can expect the price of cultivated meat to decrease significantly. Projections indicate that it could become cost-competitive with traditional meat within the next decade, making it a viable and sustainable choice for consumers worldwide.
🌟 Engineering Challenges: The development of cultivated meat involves intricate engineering challenges:
  • Bioreactor Design: Creating efficient bioreactors for cell culturing and growth is crucial. Engineers are working on scalable designs to optimize cell proliferation.
  • Nutrient Formulation: Designing the perfect nutrient solution to support cell growth, mimicking the natural environment, is a complex task.
  • Scaffold Materials: Innovations in scaffold materials are vital for replicating the texture of traditional meat.
  • Scaling Production: Transitioning from lab-scale production to large-scale manufacturing presents logistical and technical hurdles.
🧪 Scientific Advancements:
  • Cell Lines: Scientists are continually improving cell lines to enhance flavor and texture, ensuring cultivated meat is indistinguishable from conventionally farmed meat.
  • Culturing Techniques: Developing advanced culturing techniques like 3D bioprinting for complex meat structures is a priority.
  • Sustainability Metrics: Research is ongoing to quantify the precise environmental benefits of cultivated meat production.
💡 Let's Collaborate: I believe in the power of innovation to shape a better future. Whether you're a scientist, entrepreneur, or simply curious about the future of food, let's connect and discuss how we can contribute to this exciting journey.
🌱 Let's Keep the Conversation Going: The potential benefits of cultivated meat are vast, from reducing greenhouse gas emissions to safeguarding our planet's ecosystems. Share your thoughts on these environmental impacts and the groundbreaking technology of cultivated meat in the comments below!
#CultivatedMeat #Sustainability #FutureOfFood #Innovation #FoodTech #EngineeringChallenges #MeatPrices
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Thanks Robert for your thoughtful response. You've brought up some valid points that highlight the complexity of assessing the environmental and ethical aspects of cultivated meat production. Let's address your concerns one by one:
  1. Carbon Emissions from Reagents: You're absolutely right that the carbon emissions associated with the production of cell culture reagents, which are derived from the petrochemical industry, should be considered when evaluating the overall environmental impact of cultivated meat. It's essential to have a comprehensive life-cycle analysis that takes into account all such factors for a more accurate assessment.
  2. Methane vs. CO2 Emissions: The comparison between methane and carbon dioxide emissions is a crucial one, and you rightly point out that reducing methane emissions from livestock is a viable strategy. This is especially true for ruminant animals like cows. However, cultivated meat still has the potential to significantly reduce the overall greenhouse gas emissions compared to traditional livestock farming, even when considering changes in livestock farming practices.
  3. Resource Use for Cultured Meat: It's important to recognize that, as of now, some resource inputs are still required for cultivated meat production, such as the cultivation of cells and the production of growth media. While it may not be a perfect solution, the potential for more efficient resource use and lower environmental impact is significant. The goal is to continually improve and optimize these processes to minimize their impact.
  4. Animal Welfare: You rightly mention that animal welfare concerns are often more about the methods used in the production chain rather than the process itself. However, cultivated meat, by eliminating the need for raising and slaughtering animals on a large scale, can still have a positive impact on reducing animal suffering and addressing welfare issues inherent in traditional livestock farming.
It's essential to acknowledge that cultivated meat is not a perfect solution, and there are challenges and limitations that need to be addressed. It's a rapidly evolving field, and ongoing research and innovation are critical to overcome these challenges and make cultivated meat a more sustainable and ethical alternative to conventional meat production. Collaboration among scientists, entrepreneurs, and interested individuals, as you've suggested, is vital to finding solutions and continuously improving this exciting technology for a better future.
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Hello! I currently have differentiated iPSCs I wish to clean up. I use mTESR with matrigel coating.
ReLeSR selectively dissociates healthy stem cells, however even on quick release (1 minute), all the cells immediately dissociate, and I am unable to isolate healthy stem cells.
I think that it might be due to me passaging very regularly (once every three days), and the cells have been adapted and now dissociate easily.
I would also like to attribute that to the reason why my iPSCs are differentiated. I supplement them with ROCK inhibitor (5uM) every time I passage. Given that they are passaged once every three days, that means they are in ROCK inhibitor once every two days... could this be the reason my iPSCs are so differentiated, as I did not give them sufficient time to recover from ROCK inhibitor?
However, the reason why I passage so regularly is because I know need to passage once I see differentiated cells... Do you suggest I completely omit ROCK inhibitor during passaging, and would it help the maintenance of my iPSCs? For individuals with experience using ROCK inhibitor during passaging, do you feel that frequent passaging causes spontaneous differentiation of iPSCs even when you remove ROCK inhibitor the next day (before 24 hours)?
I would really appreciate any advice that would help me out of this predicament, thank you so much!
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Hi,
The incubation time with ReLeSR is too long. You need to optimize your incubation time. Seed iPS colonies at a much lower density.
If the iPSC colony confluence is very high on the passage day, ReLeSR reagents may not be able to distinguish between differentiated and undifferentiated cells. You need to increase the time between passages and reduce the iPSC seeding density.
Part of the iPSC lineage is very unstable in terms of phenotype. This means that cleaning must be done regularly. Sometimes by regular manual removal of colonies with incorrect morphology (every day). Additionally, they use ReLeSR before the passage should be performed.
If a high number of differentiated iPSC colonies is observed, positive selection should be used.
At the beginning:
- use a low seeding density (e.g. 20 most beautiful colonies (positive selection) per well of a 6-well plate);
- extend the time between passages before applying ReleSR (iPSC colonies should be large, highly compacted, in confluency 60-70%);
- optimize the incubation time with ReLeSR;
- use DPBS without calcium and magnesium;
ROCK inhibitor does not have to be used for every passage. It is recommended in the situation of iPSC thawing and positive selection only.
Good luck!
Justyna Augustyniak
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I am trying to grow Kasumi-1 cell line. I use RPMI 1640 and 20 % FBS but cells never seem to be growing. They keep on shrinking in size and eventually die off.
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have you tried heat inactivating your FBS? I have found that this really helps Kasumi cells grow better.
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The prevailing theory is that cancerous tumors reflect a form of cellular natural selection, where random mutations confer evolutionary advantages to tumor cells. These survival benefits accumulate over time, eventually empowering tumor cells to outcompete healthy cells and defeat the immune system.
Given this theory, one expects a correlation between cell division rate and cancer rate -- tissues with the highest number of cell divisions should show the highest incidence of cancer (environmental and hereditary factors notwithstanding).
However, few papers seem to verify this assumption, or even document cell division rates and lifetime cell divisions among different tissues.
These are the two best papers so far:
However, the same senior author leads both papers, and the papers seem to omit the most common cancer types, breast and prostrate. Furthermore, the methodology seems fragile as they conducted an analysis across different studies that may not have employed uniform methods.
Could anyone recommend more robust or authoritative papers on the subject of cell division rates?
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I wish you Mr Clarence Hu to be a doctor very soon . Best regards.
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Within a new project I want to stain collected tissue from rats with alizarin red. Since I only found protocols for in-vitro applications or when tissue mentioned then only parafin slides - I would be glad if you could share with me your expertise.. The collected tissue will be mounted and frozen and cut into cryosections (this cannot be changed due to other reasons) and should be stained afterwards with Alizarin Red solution. How about the demasking,ect..?
Thank you a lot in advance..
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Alizarin - for calcification tests?
I tried for paraffin sections, but unfortunately not didnt get desired results. I am too eager to know if some one gives a protocol some
thing better.
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I came across two papers (Shcheglovitov et.al., 2013, Nature; Zaslavsky et.al., 2019, Nat Neuro) where they mixed neurons from two genotypes and seeded them on a bed of rodent astrocyte. How does one use this setup as a readout for any phenotypes?
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Yojet,
A nice advantage of neuronal co-cultures of this type (when one can distinguish between the different cells) is that they allow analysis of the behaviour and morphology of both types of neurons side-by-side while reducing culture and staining variability to a minimum.
In the particular case of these papers, it seems to me that the authors want to analyse Shank2/3 role at the postsynapse while keeping presynaptic terminals as WT. Therefore, a "sparse" co-culture helps analysing morphological features while also provides a source for mutant postsynaptic compartments as well as WT presynaptic buttons to form hybrid synapses. I will here admit that I haven't fully read the papers and hence my view could be an oversimplification. So, this is what I got from an overview of the results and what I can assume from my own experience in co-culture.
Hope this may help you.
Cheers,
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  • Severe myocardial damage secondary to ventricular remodeling decreases cardiac output.
  • Extensive areas of necrosis in ventricles after myocardial infarction become poorly mobile, and therefore, the ventricular ejection fraction is decreased.
  • Transplantation of myocardial stem cells in damaged areas of the ventricles, improve contractile function and therefore cardiac output.
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Hi all
So far, scientific and technological advances to improve the function of a myocardium damaged in a segmental or limited way of the left ventricle are the alternatives commented and discussed along this line of discussion and argument.
But I wonder if there is not something more than totipotential stem cell transplantation and the support of said transplantation on a 4D impression scaffold? and I answer:
  • When destiny reaches us and the future outlined here becomes reality, it is also very likely that the transplantation of cloned organs will be feasible; that is, a cloned heart accepted by the subject that requires it, because it would be formed from the culture of their own cells and tissues. A cloned heart transplant and also autologous or homo-transplantation.
José Luis
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I am growing organoids in monolayer but honestly couldn't manage to make it confluent. the protocol i followed made use of collagen. they first look "like confluent" with about 70-80% cell, but after washing or changing media, they just turn from 40 to 10% remaining cells.
i thought there could be a problem with collagen? what is the best collagen concentration and how much collagen should be used to coat per well? Thank you.
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I've been working with some bone marrow derived MSCs I got from Texas A&M and I've wondered what other's experience has been with bone marrow derived MSCs (or MSCs from adipose tissue, hUCB etc. doesn't matter). In my experience they tend to be slow growers (plated at ~2000 cells/cm^2 it'll take ~10 days to reach 80% confluency) and senesce quickly (I get like 7-10 passages out of them). I change the media weekly and don't use a pH indicator. I've been using stemlife MSC medium for undifferentiated expansion. This media is interesting to me because I assume its probably pretty basic but it contains what they call "life-factors" which is proprietary of course.
Has anyone on here created their own media or found a particular method of culturing to be the most robust and productive when working with bone marrow derived MSC's?
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We have tried with both alpha mem and glutamax as basal media plus 10% FBS, 1ng of FGF2 and antibiotics.
Change twice weekly or once in three days
Our loading density vary between 5000-10,000 cells/cm2..
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Hi, I am using a commercial line of NSCs from X Cell Science. I would like to know if anyone has stained it for PAX6 marker? If so, was it positive? Having said that, are NSCs supposed to express PAX6? What if they don't?
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Dear Yojet,
NSCs do express PAX6 and its level is essential for determining the self-renewal & neurogenesis/differentiation state of the given population.
You may have a look at those two papers for more details: PMID: 19521500 & PMID: 27191603 .
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I routinely functionally assess the iPSC derived neurons using calcium imaging with Fluo-4/AM (490nm/510nm). However, have not been successful at using those same neuronal dishes for carrying out ICC. The reason that I think could be are as follows:
  1. The calcium-sensitive dye fluo-4/AM has an emission at 510nm. As a reason why, there is a spectral overlap with my anti-bodies of interest.
  2. As I try and wash out the dye from the dishes, the neurons detach as a matter of fact. These neurons have been subjected to constant washing before and after the calcium dye-loading process. Moreover, these neurons are first stimulated with TTX following ionomycin and EGTA+TX are added to the dishes as internal controls.
Any suggestions or references or direction to a protocol would be of a great help!
Thanks!
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I wish to look at gliosis in a dish, basically the neurons start becoming apoptotic and glial cells come to the rescue. But if I have a patient neurons, how do I mimic this event? Any idea what can be used a control?
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Dear Yojet,
As you have found, "gliosis" has a huge amount of background literature. Both the CNS axon regeneration field and the excitotoxicity/stroke field have used the neuron/astrocyte co-culture model in the past to try to understand the role of astrocytes in neuroprotection, so I suggest looking at some of the older literature in those fields.
One of the original culture models for excitotoxicity with which I am familiar was developed by Dennis W. Choi, and used cortical neurons & astrocytes in contact with each other (there are other models). More recent Transwell studies were used to try to understand the role of direct contact vs. secreted factors in toxicity and rescue, as well as the inhibition or promotion of axon outgrowth. I also suggest looking at publications from Ben Barres' lab regarding astrocyte function and neuronal survival.
Transwells are a great approach. However, one system used to culture primary neurons used feeder layers of glial cells, with the neurons cultured on glass coverslips that were inverted over the glia. Since the distance of the coverslips can be varied by the size of the paraffin dots that support the coverslips, if you are already culturing your neurons on glass, you might consider that method as a first approach. Details of that method can be found in the book Culturing Neuronal Cells that is edited by Banker & Goslin:
Good Luck!
Jill
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I'd like to make some Wnt/R-Sponding media to lower the costs of organoid maintenance
Many thanks
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I am learning to culture organoids. Many thanks for the updating information.
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I read a study (link below) where they cultured cells and re-suspended them in a buffer before injection. I am curious what buffers are safe for this? PBS? aMEM? What do you think?
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I highly recommend a paper by S.C. Gad et al (2006), entitled, Nonclinical Vehicle Use in Studies by Multiple Routes in Multiple Species. This paper was published in the Int. J. of Tox. 2006, 25: 499.
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I am looking for different methods of mammalian stem cells freezing and thawing. Both in industrial and laboratory scale. Would greatly appreciate your input.
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You can consider using trehalose along with electroporation ( Dovgan B, Barlič A, Knežević M, Miklavčič D. J Membr Biol. 2017 Feb;250(1):1-9. doi: 10.1007/s00232-016-9916-z.)
Take also a look at the resent reviews, e.g.,
Regards
Gintas
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Hey guys, I have try several transfection reagent (Xfect, lipofectamine 3000, PolyJet) for transfecting mouse ES cells. But the transfection efficiency is quite low. The best I can get is 50% (using polyJet) which was transfecting a plasmid with ~10kb. But I could just get this percentage once and got much lower efficiency in the other trials (using the same plasmid). I am not sure if the reagent in our hands function properly or not because some of them are quite old and the our freezer was broken down previously which may make the reagent degrade. 
Could anyone share some experience in transfecting mouse ES cells? For example, which reagent you used? How big is your plasmid? And what is the transfection efficiency you normal get? Thank you!
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Primary stem cells can be difficult to transfect, and 50% efficiency is quite an accomplishment. In terms of transfection reagents, having liposomes be combined with other factors to improve efficiency (see https://altogen.com/product/altofect-transfection-reagent/) can help you get better results. Plasmids usually result in low transfection efficiency, but what you got is pretty amazing, and I don't think you really need to change the protocol that much.
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Update: Cells are growing fine in our lab now!
I'm the only person in my lab starting on iPSc culture (we received a vial from another lab and all I have is some the medium they use for culture) and I'd like some tips and help. I have human iPS cells, and I culture in mTeSR1 on matrigel coated plates (so feeder free), replacing media daily. I try to remove what I think is differentiation by marking on the plate while looking through a microcscope. One cell line shows nice colonies like I saw on suppliers webpages (Like Stemcell or Invitrogen), the other I'm not so sure... 
I've attached some pictures, can someone tell me if this is what it's supposed to look like? And can give someone tips on how to passage? I've passaged one with gently scraping, like i saw mentioned in literature and tried picking the colonies with a p1000 tip (but didn't know if I actually picked up a colony or not, so I tried scraping). Maybe i just need a bit more patience :) 
While awesome to start things up, it's frustrating having no one to ask if things are supposed to be this way :)
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"When you plate the cells in low densities use ROCK inhibitor to prevent cell differentiation and/or death. With higher densities you should be fine without any. Cell passaging can be done using TrypLE, Accutase or dPBS + EDTA, I would let them grow till around 70%, more and they start to differentiate."
Sorry, but this answer makes no sense. Density is not the problem that is resolved by ROCK inhibitor. Clump size is the determinant. You can have a very dense concentration of single cells and they all will die, while larger clumps will survive.
The same is true for susceptibility to differentiation. Percentage of confluency is not the problem. The size and age of the individual colonies is what determines the likelihood of differentiation.
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Which concentration of Matrigel you use for iPSC culture? I was using 500 ul in 15ml and then, I have added 2 ml in 6 cm dish. However, my colonies did not attach.
Now, I am using 1.5ml of matrigel in 12 ml and so far, nothing.
:)
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Using a dilution ratio is meaningless unless you know the starting concentration of the matrigel you have on hand. I am not aware of any vendor that supplies it at a constant concentration that would allow you to use a constant dilution ratio.
All that matters is the protein concentration of the specific lot of matrigel that you have. From that you can calculate the proper dilution. In general, I use one mg of matrigel per 100 mm plate, which is the same surface area as one 6 or 24 well, or three 60 mm plates.
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Hi all. I came across a technical question from one of my friends, that whether a given culture of hESCs can be inserted with three different reporter constructs using CRISPR/Cas9 method, which means a triple knock-in line hESC. I could not find any relevant answer from the literature that I came across and thought researchgate would be an appropriate platform. Hence, I request all to give your inputs in this regard. Thank you.
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Hi.
You did not mention any concern!
However, you are not deleting any genes, but inserting genes (reporters) at the end of 3'-UTR of specific genes instead of random inserting genes at traditional plasmid DNA transfections in which many copies of tandom repeats are usually inserted. So the stability will be gradually settled down or lose after cell generations.
No worry about the pluripotency or stability of the KI-targeted a single copy of reporter. The only worry would be weak fluorescence due to the a single copy of gene insertion unlike transfection. Especially, when the house-keeping genes are making a few copies, i.e., non-abundant protein genes.
Since no one is interested in triple KI of ubiquitous gene reporter-hESC line, no report.
Cheers.
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Differential gene/protein expression profiles on same cell line always shows varied results, why does this happen?
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Do they acquire neuron-like morphologies in your cultures as well? What signalling mechanisms are taking place when they're seeded at lower cell density?
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Hello Yojet.
Unlike you are worrying about the signaling pathway, there are established systems to proliferative culture and differentiation culture which have inductive signals in the respective systems. Those one are mimicked of signaling pathways found in vivo neural cell differentiation within the embryo or in vitro embryonic stem cells or equivalents. If you make a similar niche as in those in any material-based scaffolds or surfaces.
Regards.
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Hi
I used two cell lines hESC cutured in E8 medium feeder-free condition.When I convert into naive state use protocal by 3iL or NHSM media,I find the colonies shows continuous apoptosis and cannot passage even though forming a little dense colonies as picture.First I think the high concentration of every inhibitor harms to cells in consideration of individual cell line,but when I reduce the dose,it does not work.
Does anyone have similar experience or can give me advices?
Many thanks.
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Hi,
Have you figure out the way to convert the cells to naive state without using MEF feeders? I am now trying to use the 5iLAF in MEF-conditioned medium. Some domed colonies appeared, but very small along with massive of cell death.
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Hi everybody. I've bought human CD34+ derived iPSC line from Life Technologies. In the initial recovery as soon as I got the cells, it worked great. However when I cryopreserved the cells with E8 medium with 10% DMSO and thaw them, I found massive cell death.
Here are the details:
Day 1. Thaw cells as fast as possible. Culture them with E8 medium + ROCK inhibitor.
Day 2. Most of the cells are viable. Change the medium, with ROCK inhibitor.
Day 3. Start to see modest cell death. There're still some decent looking colonies. Change the medium, with ROCK inhibitor.
Day 4. Massive cell death. Although there're still some cells left (but not quite look like colonies) adherent in the dish (vitronectin coated), I am worry that eventually all the cell will die.
So is that normal or I did something wrong with the culture? I will definitely try longer culture.
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Hi, 
The iPSC cells grown in the E8 medium on vitronectin should be detached as colonies. Try to use EDTA to detach the cells in the aggregates. This method of iPS cell detached didn't need centrifugation before cells freezing. The iPS cells viability is better when we use EDTA to detached iPS cells in comparison to trypsin before cells freezing,
Good luck
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I would like to perform a live/dead staining on my bone marrow aspiration samples, as well as add some fluorescent-labeling to track certain components. However, the auto-fluorescence of the bone marrow itself is masking everything.
Also, I can't seem to find any information on the fluorescence spectrum of bone marrow or blood.
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Hi Mccarthy,I do fix single cells by PBS+Sodium azide 1% I hope ,this help to your problem.
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I've read a number of protocols on this and several people's comments, but try as we might our lab is struggling to make this a success; whether we are culturing to differentiate macrophages (conditioned L929 media) or dendritic cells (GM-CSF), we're left with virtually zero viable cells at the end. I suspect that the hematopoetic progenitors are not surviving the process.
After I collect the bone marrow, I wash them once with complete DMEM and then resuspend in 90% FBS + 10% DMSO.  Aliquot the cells (10^7/tube) into cryotubes and then into rate-controlled freezing container overnight and transferred to liquid N2 the next day.  For recovery, we put the frozen tube into 37 deg waterbath until *almost* thawed, transfer the cell slurry into pre-warmed complete media (~20-30 mL), centrifuge to remove DMSO, and resuspend in differentiation media. 
The only things I can think of that might still be affecting our results is 1) the concentration of cells/freezing media may be too high or too low, 2) thawing is too quick (although I thought that was the point), 3) handling is too rough; the cells need a rest period before differentiation.
But truthfully, I have no idea. By all accounts I've heard, we should at least be getting SOMETHING. When we prepare macrophages or DCs from fresh bone marrow, all is well and our yield is excellent. 
Does anybody have any thoughts? What the heck are we missing here?
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Hi,
I have successfully isolated stem cells from fresh urine but I am trying to figure out if the urine sample can be refrigerated for a period of time equivalent to shipping on ice and still get cells out. I am setting up an experiment to try and isolate cells from urine that is refrigerated for 24, 48 and 72 hours but I was wondering if people have done this. I haven't found many papers online. Any suggestions are welcome.
Thanks!
Elisa
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Hi Elisa, you could consider freezing them at-80oC in the presence of DMSO.
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I am establishing a mo-DC protocol, and there is too many option in regards of maturation. I would like some help deciding. Since later in downstream applications I would be combining IFNg, I would like to include this cytokine in the protocol. However, I've seen that in order to truly create maDC i should activate the other canonical pathways. That is why I though of using TNFa and LPS. Before jumping and trying it out, I was wondering if anyone has experience with this type of cocktail or IFNg+TNFa.
Thanks
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Hi
Try LPS + IFNg + Poly I:C for max TLR stimulation. I would not try TNFa if you want a good TH1 output from your DC. TNFa used to be used along with IL-6 and PGE2, but now you don't see them used as they can create a DC2 profile to Tregs. 
Bruce 
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Good morning.
I study IPSC-derived mesenchymal stem cells (MSC).
After differentiation into MSC, cell proliferation speed was slow than normal MSC.
Cells did not proliferate after 4 passages and their morphology changed (aging phenotype?).
I already asked. But I still have not solved the problem. I do not want to add growth factors.
Can I use only the MSC Media Supplement FBS for MSC extensions?
Thank you in advance.
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Hi,
There are two methods:
1. Supplementation of the medium by means of mitogens
The basic fibroblast growth factor (bFGF) and epidermal growth factor (EGF) are the most popular mitogens used in iPSC differentiation protocols.
Mitogen is a chemical compound or another factor inducing cell mitosis. Mitosis is a process responsible for cell proliferation and consequently formed daughter cells quite similar to the parent cell.
If you want to have an iPS-MSC which still proliferate and delay aging of your cell line you must stimulate it with mitogens for example; bFGF or EGF.
Without mitogens, your cells go to next stage of differentiation which is characterized by stop the proliferation.
The serum (FBS) in the medium is a second factor which is responsible for induction differentiation and inhibition proliferation, but it is necessary for cultures some of the cell types.
2. Cell Immortalization
An alternative method to enhance proliferation ratio and delay aging of iPS-MSC may be immortalization for example by means of Adenoviruses.
Best regards
Justyna Augustyniak
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I am trying to culture mouse embryonic stem cells in 3D chitosan hydrogel but can't harvest cells from hydrogel in order to do some assays like cell count or cell viability,etc. is there any effective method to detach cells from hydrogel without damaging them?
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You could to use a Lysozyme to biodegrade chitosan blocks without degrade yours cells.
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Normal epithelium has a turnover. Life span of the epithelial differentiated cell is short. For example, lifespan of colonic epithelium cell is 3-4 days. Even within this short period, the differentiated epithelial cells are constantly in contact with the stem cells. Somatic stem cells generate differentiated progenies at regular basin to maintain tissue homeostasis. This turnover is regulated by feedback or feed forward regulation. In feedback regulation, stem cells take feedback messages (information) from their progenies. In particular, stem cells seem to send feedforward signals to their progenies to regulate their behavior .
Quantum entanglement is a physical phenomenon that occurs when pairs or groups of particles are generated or interact in ways such that the quantum state of each particle cannot be described independently of the others, even when the particles are separated by a large distance—instead, a quantum state must be described for the system as a whole.(Wikipedia)
If we think genes as quants  can we explain stem cell-progeny relation (feedback, feedforward)with quantum mechanics?
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A great approach would be to attain negative entropy to bring order, organization and communication...
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hi, anyone with experience on the potential toxic effects of nano-scaled materials on stem cells in vitro or/and in vivo?
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Hi Magdalena,
When we mention "nano-scaled materials" we are referring to hundreds of thousands molecules and compounds, as well as nanomaterials and "nano devices".
Therefore, is no general answer to your question and tests must be done to evaluate of toxicity (safety profile) of each nano-material separately.
A general rule of thumb, however, may be:
"If the material in bulk possess any toxicity, no matter how small, when down-sized to micro and then nano, the toxicity will increase significantly, simply because we are increasing surface to volume ratio of that particular substance."
I hope these help, otherwise let me know.
Meanwhile I attach one of our articles in which we studied toxicity of nanoliposomes on Human cell culture.
Mozafari, M.R., Reed, C.J. & Rostron, C. (2007) Cytotoxicity evaluation of anionic nanoliposomes and nanolipoplexes prepared by the heating method without employing volatile solvents and detergents. Pharmazie, 62 (3), 205-209. ISSN 0031-7144
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The emerging evidence suggests that the drawbacks of senescence are twofold. First, one might expect, senescence causes a loss of tissue repair capacity because of cell cycle arrest in progenitor or stem cells. Second, senescent cells produce pro-inflammatory and matrix-degrading molecules (such as IL1-beta, TNF-alpha and MMP, respectively) in what is known as the senescence-associated secretory phenotype (SASP). The SASP is largely initiated by NFkB and p38MAPK signal pathways. I wonder what kind of other signal pathways are involved in SASP? JNK signal, for example, seems to be too transient to cause SASP. 
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Cell senescence can be both good and bad (i.e. promotes tissue repair or inhibits it) which is likely dependent upon whether senescent cells are removed (i.e. by the immune system) or they persist as may be the case in ageing.
Other pathways regulating the senescent secretome include IL1B, HMGB1, TLR4 and mTOR.  
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Dear colleagues,
i am planning to track down the uptake and processing of a FITC-labeled antigen (e.g. FITC-OVA) by Peyer's Patches after oral gavage. Unfortunately, most of the literature deals with antigens bound to particulated matters, like nanoparticles (chitosan, etc.). Is it possible to track the uptake of a soluble antigen by Peyer's Patches as well? I plan to isolate Peyer's Patches cells and use FACS analysis or fluorescence microscopy along with T cell markers to look for Th1 or Treg shift, respectively.
Thanks in advance!
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I ve been doing the staining of peyer's patches for last 2.5 years with generalized method and getting good methods. The same method like we do with other lymphoid tissues. But there are some precautionary measures you have to take. If you need to get good results then follow the protocol of some of the recent papers where they isolated peyer's patches and you can find out them from PubMed. The method we have been doing has also provided us with good results of staining and lot more
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Hello all,
I'm looking to start using an ALDH assay as a marker of stem-like characteristics in Cancer Stem Cells (CSCs). These assays are quite expensive and before I commit to purchasing one, I was wondering if anyone had first hand experience with assays such as Aldefluor or Aldered. (Or any others) Do they work well? Is there an assay anyone considers to be the best or better than the rest?
Thank you for your time.
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As in ALL biomarkers for CSCs, they at best enrich for CSCs, they most definitely do not identify them. So far, the only valid assay for CSCS is a functional one, based on the McCuloch & Till definition requirements for stem cells to which tumorigenicity should b e added for CSCs. The CSC is a tumor initiating cell. When more than 1 is needed, some of the cells are not CSCs. Use of the Poison distribution is necessary to properly estimate the number of CSCs. See our work on the Hybrid Spheroid Assay.
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I'm growing human primary myoblasts & tenocytes in 3D collagen type I gel, where I see huge increase of doubling time in the 3D gel, up to about 4 fold increase.
Has anyone had this issue and is this a normal behaviour for these cells in 3D collagen gel?
Thank you.
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Hi, 
each cell type is different, indeed but I think the slowing of division rate in 3D vs 2D is a general trend of cellular behaviour. Cells tend to reach a kind of 'metabolic equilibrium' instead of dividing & dividing again, which is not very physiological. Cells-cells interactions and the physico-chemical properties of the microenvironment (stiffness, prorosity, biological factors, nutrients diffusion...) may explain this, so tuning hydrogel properties to regulate cells behaviour is a way to investigate.
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I need to send my stem cell samples to another institution. What is the time limit? One of my colleagues  said 8 h is safe for tissue samples. However, I didnot come across such an information. How about stem cells? And is there any paper that I can cite?
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Hello 
yes , Dry ice (15 kg are sufficient for about 72 hours if the package is kept refrigerated at intervals between shipping ) 
the attachment will be useful
Good Luck
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I am culturing gastric cancer cell with 10% FBS. From last few months i have noticed some black dots floating in the plated media and slowly the number of dots getting increased. After reviewing some article i got a paper which suggests, these black dots are achromobacter which can be eradicated by 10mg/L ciprofloxacin and piperacillin in combination. but still i have question about PSA which we normally use as disinfectant. when we add 0.1% PSA along with 10mg/L Ciprofloxacin and Piperacillin, is it good for cellular health?  
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Dear Kunal,
The best approach is to use sterile techniques and to prevent any contamination. Using ciprofloxacin and piperacillin might interfere with your experimental results.
Hoping this will be helpful,
Rafik
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We have noticed that some patients' cells freeze and thaw easily and those patients get good clinical response to frozen cells. There is a group who do not respond well to frozen cells. In the vet world we see some bulls whose semen will not freeze. Is this the same for human SVF cells?
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The observation f or the bull semen comes from personal observation in the industry. I am not sure if it has been published but testing before full scale harvesting is widespread practice.
Since this time I have observed patients who have responded well to a fresh treatment, nothing from a thaw and then nothing from another fresh treatment.. It may not be a problem that relates to individuals freezing abilities. It may simply reflect the fact that we get all the improvement possible for that patient with one treatment.
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Dear Colleagues!
Recently I've performed TEM observation on cultured spermatogonial cells. I've found two unknown structures (attached below). I thought, they're just artifacts, but they reappeared several times during my observations. I tried to find analogical structures elsewhere, but to no avail. Does anyone knows what could it be? I'll be grateful for any advice.
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Bottom image: I agree with Thomas, I think the section is just thinner in the bottom portion of the image and you probably lost that region of the slice. Or perhaps the section shrunk in that portion, leaving a gap in your sample. 
Top image: could you add arrows etc to clarify which region of this highlighted sector you're interested in? This pink-circled region adjacent to the nucleus is just a sector with lower heavy metal staining, right? I see a lot of features in this area: potentially some Golgi, mitochondria, lysosomes, ribosomes, etc. Remember, germ cells have all kinds of unusual features, including glycogen granules (although they should appear as darker staining with heavy metals), ERV particles, nuage (inter-mitochondrial cement), etc which often befuddle people who do TEM on other types of cells. 
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I am working at the problem of mammalian development and stem cell differentiation. And wonderingly how can we define different cell types, and how many cell types in a specie. Any one know where can I find the answers?
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Dear Jinshi,
Several articles have dealt with this interesting question:
McCarthy* MC, Enquist BJ. Organismal size, metabolism and the evolution of complexity in metazoans. Evol Ecol Res 2005;7:681–96.
Valentine JW, Collins AG, Meyer CP. Morphological complexity increase in metazoans. Paleobiology 1994;20:131–142. doi:10.1017/S0094837300012641.
Carroll SB. Chance and necessity: the evolution of morphological complexity and diversity. Nature 2001;409:1102–9. doi:10.1038/35059227.
To determine how many cell types are in a tissue or organism is more complicated.  The main issue is how you define cell types? Morphology, transcriptomics (as Mohamad said), proteomics, etc. All these methods allow you to identify  cell sub-populations but this may be not cell types, which adds a notion of differentiation pathway. And if different cell types should have different profiles, the reverse is not true.
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I will add this solution to collected menstrual blood, and then isolate endometrium stem cell from blood. So this solution had better to be sterile.
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Hi, if you want to use the isolated endometrium stem cells for functional assays or for cell culture I would suggest that EDTA may not be a good choice as an anticoagulant. A citrate-based anticoagulant, such as ACD or CPD, would be worth considering. 
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Hello, some questions..mammalian cells are usually frozen between 1 x 106 cells/mL to 1 x 107 cells/mL. do you know the best concentration/cell density to freeze differentiated stem cells?I've observed that they do not like to divide as well they do after several passages. I am wondering if the amount of cells per vial could affect on it in terms of cell death or may be they just dedifferentiate. Thank you
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I just want to remind two general points for frozen cells: always use freezing container to achieve a rate of cooling around -1°C/minute, the optimal rate for cell preservation. When recovering the cells, don't extend the time in water-bath: right after around 80% get thawed, clean the vial and transfer the content into a falcon tube with 5ml fresh medium. 
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can we stoped the aging of cells
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Cellular aging is a natural process and it can not be stopped. However, one can delay the aging process by delaying the genetics, epigenetics as well as metabolomics of aging cell. 
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Q1. I am planning to use an ALP kit to detect the mES cells pluripotent/ differentiation status. Which would be the better (ALP) kit for this purpose?
Q2. I generally passage mES cells every 2-3 days. But some kit says 4-5 days (crucial for ALP activity). The detection days (4-5) are very strict? If grow the cells for 5 days, the cells were not looking good., may be started differentiated (EB?).  
(I used 2i+LIF medium with supplements)
Q3. Does anybody having experience of using- Vector Blue Alkaline Phosphatase Substrate Kit III (from Vector Laboratories) for mES cells?
Thanks in advance!
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Hi Ramanan,
I work with human iPSC and I guess 4-5 days could be sometimes too long for ESC which might lead to differentiation. Proliferation rate might differ from cell line to cell line (sometimes even for clonal lines), so I would recommend to passage your cells as you normally do (AP staining would not work when the cells are differentiated, right :)
I tried live AP staining on my iPSC, which worked nicely. One advantage is that you do not have to fix the cells and they survive the staining with no differentiation or some other side effect. Have a look at the link if that might be of interest to you.
Good luck.
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I am culturing mESC RW4 cells and found that they start to differentiation after two passages.
For culturing, I used the knockout DMEM (Gibco), with 15% FBS (ES cell, Gibco), 2mM L-glutamine, 10mM Hepes, 0.1mM non-essential amino acid, 0.1mM beta-mercaptoethanol. The media is prepared freshly and used up to 1 week. Fresh LIF is added to the cell directly every time when changing media or splitting. I change the media everyday for mESC. And of course I used 0.2% gelatin for coating the plate and have MMC treated fibroblast as feeder cell for mESC.  
I attached the figure to show the morphologies of mESC at p1 (left figure) and p3 (right figure). mESC at p1 are undifferentiated with nice round shape. mESC at p3 have two types of cells mixed together. I think the round colonies are still undifferentiated. But those small round shining cells around the colonies look neither fibroblast nor mESC. To me, they are differentiated stem cell. I will use AP1 staining to confirm if they are really differentiated or not in the next step. 
I am so upset they are easily to differentiate. Due to the consideration that the FBS batch are not good, I have tried to change the FBS(optimized for ES cell) to knockout serum replacement (Gibco)  and at the same time change trypsin to accutase (Gibco). I have also asked another lab for borrowing the good FBS that have been tested by them. These changes did not help with maintaining the stem cell status.
 I am now desperate and would like to ask if anyone has experience the same situation and if any one could suggest any element or staff that I should be aware. Thanks a lot!!
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If you add fresh LIF all the time, feeders are redundant. You need either LIF or feeders. 
The lot of FBS could be a reason. We usually test several lots of FBS, and order 20 bottles of the best lot. 
If you have just started culturing mESC, there is one important step: breaking the cell clumps to a single cell suspension before plating. Usually, I lightly push the pipette to the bottom of a 15-ml tube, and pipette the cells (in 1-2ml suspension) for at least 20 times. 
You cannot handle hESC like this, but you must do it for mESCs. 
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I have read that (as usual with kits!) the amount used can be significantly dialled down to make the kits go a little further. Does anyone have experience with this?
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Hi Olivia, I forgot to mention I used a free sample at the beginning as well as you too. very cheap and as good as an expensive one. GOOD LUCK!
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Hello everybody.
I'm trying to culture and differentiate murine DPSC into neurons like cells, but the proliferation ratio is really low.
Moreover, present cells show different morphologies (no genetic analysis done yet).
Do you know any coating for the plate that would increase proliferation and differentiation into neurons like cells?
Thanks ;)
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Hello Francesco,
First, Proliferation and differentiation are two contradictory things...if u want to do efficient differentiation then u have to stop cell proliferation so that cells can differentiate properly. Second, coating is done to increase adherence and sometimes Fibronectin and laminin help in increased neural differentiation as they help in Na/K channel activity and hence increased survival and differentiation of neurons. 
As you cell proliferation is slow, so I will suggest you to standardise an optimum media first (preferably alpha-MEM works best for DPSCs+ good quality FBS), once you get desired proliferation upon standardised conditions then you can try differentiation without coating and even with coating parallely (FN and laminin). As per my experience with human DPSCs, I get very efficient neural differentiation even without coating.
Hope it helps !
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Does anyone have experience on differentiation of mouse induced pluripotent stem cells (iPSCs) into hematopoietic fate? I need an experimental design to differentiate my iPSCs into hematopoietic lineage but not a specific lineage. I need to know which culture supplements are the minimum requirements and finally which markers and functional tests should be analyzed to confirm the successful differentiation (which genes and surface markers must be analyzed by qPCR and flowcytometery?). owing to the limited grant, I appreciate the answers with the minimum compulsary markers. thank you. 
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I would look at functional testing.  It's more both more definitive and cheaper.  Less likely to tell you what you want to hear (consider that an advantage or a disadvantage, depending on where those grants come from?).  
Colony-forming assays.  Chemotaxis.  Clotting.  Hemoglobin / pseudoperoxidase staining.  Endocytosis.  Free radical production.  If you have those, you wouldn't technically need flow, unless you want to publish a paper, in which case your reviewer will want it, for no reason that particularly convinces me. 
It's easy to get a cell with all the right flow markers and no function.  It's impossible to get a cell that functions right and doesn't have the right flow markers.  (If it was possible, it might still be valuable both as basic science result and cell therapy candidate, but I digress ;-)
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Hi, I am interested in doing pluripotency analysis of my mESCs, and want to include the earliest markers for differentiation. I do observe some form of differentiation in my colonies, but not sure as to which lineage they could belong to. I am looking for something that's probably before the neural lineage, but ahead of naive pluripotent nanog/oct4 expressing stage?
Many thanks.
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Dear Pooja,
I would suggest
Gata-4 (yolk sac endoderm and later cardiac marker) , GATA-6 extraembryonic endoderm and visceral endoderm
Sox1-neuroectoderm
T (Brachiury) - early mesoderm
loss of SSEA-1 and nanog as general sighs of differentiation
alpha-fetoprotein - endoderm 
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AraC doses.
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HL-60 is a pro-myelocytic leukemia cell line frequently used as a model for AML and we and others have tested AraC in this cell line since AraC, together with an anthracycline, is widely used for AML treatment. In our hands the IC50 is about 144 nM (see Pardee et al., Blood 119: 3561-3570 2012).
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I use the 4034 from stemcell. Seed cell are cd34+ from hES. 
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And you used a methylcellulose with many cytokines... Maybe yes, your red cells could potentially be some EryP-CFU and the other some G-CFU (granulocytes colony forming unit), but I suggest you to plate more cells (maybe prepare different plates at different concentration), because it's hard to tell. As you may know, on the website of Stem Cell (http://www.stemcell.com/en/Products/Popular-Product-Lines/MethoCult.aspx) you will find some stereotypical colonies, in order to have a reference for your results. It helped me a lot when I started.
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my cells doubling time around one day and i cultured them four days ago and they did not double or increase in number. they did not die neither. may be the medium is not enough? .
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As Rose said, it could be a mycoplasma infection, or cells have reached replicative senescence and won't proliferate further. If these are primary cells then I suggest not using them at higher passage (depending on cell type, primary cells shouldn't be used beyond P5-9).
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We are using alpha-MEM with 10% FBS and 1% penstrip. But growth is very slow.
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as Ms Miguel said: 
some of reasons like: high passage, donor too old, or early stage of primary culture, it grows very slowly.
- you can culture in small cell culture dish (they can interact with each other), and gradually passage
- Use some of growth factors specific for them (temporarily use) or specific medium for MSC from company to enhance proliferation
- or culture in DMEM/F12- FBS 15%
- or if hypoxia condition is available, you can culture short time within 2-3 days, followed by normal condition. 
however, growth factors/ FBS / Hypoxia condition are high or long, they may modulate gene expression and signaling pathways which might affect to results later.
all options are temporarily uses to enhance proliferation. later when getting enough cells, cells should be in normal culture condition before experiments.
Knowledge is too wide, just a few experience. I hope those help. :)
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I want to know if ILC3s specifically, and more broadly all ILCs can be reconstituted by adoptive transfer of bone marrow cells from a widl-type mouse to a lethally irradiated knockout mouse.
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Hi Mahima,
Yes, ILC3 should be reconstituted after BM Tx into lethally irradiated mice, though, as Diogo mentioned, the populations might be different than naive animals. In my hands, I see preferential reconstitution of Lti cells (Lin- Rorgt+ NKp46-) in mice reconstituted with WT BM and a lot of radio resistant host cells of this phenotype remaining. However, reconstitution of NKp46+ c-kit lo ILC3 as well as NKp46- c-kit- ILC3 is similar to naive mice. I transfer 5*10^6 total BM cells after radiation. Good luck.
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My aim is to isolate as much RNA as possible from a small amount of mesenteric arteries of rat (less than 100 um diameter) 4 fragments (less than 100ug) which then will be used for further cDNA experiment. Is that possible with this quantity?
Could I get any help what is the best Kit or Protocol to achieve the best results with the lowest amount of sample.
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Hi Ahmed, 
If you're not already, I'd look into getting RNAlater to preserve the RNA in between steps. Phenol-chloroform extraction can be a good second step. The paper by Rodrigo, Martin, et al that I'm pasting below looks like RNA isolation from the same tissue if you want to give it a read. 
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Dear all,
I'm trying to stain actin filaments with Phalloidin Tetramethylrhodamine B isothiocyanate (TRITC) on C3H10T1/2 Cl8 cells (mouse embryo fibroblast).
I'm following a well established protocol of my lab. Cells are:
PBS washed
fixed with paraformaldehyde 4% 10 minutes
PBS washed
permeabilized with 0.1% Triton 10 minutes
 PBS washed
incubated with 50 ug/ml phalloidin in PBS for 30 minutes
PBS and finally water washed
air dryied and mounted with glycerol:PBS (9:1)
In the same experiment (same cells) in some glass coverslips are clearly visible actin fibers, well stained, while in other glass coverslips nuclei seem stained and instead of clear actin fibers I can see just a "cloud" of actin around the nuclei. Furthermore, boundaries of cells seem not well attached.
I repeated the experiment several times and I always have some samples not well stained (or fixed).
Does anyone has an idea of which experimental parameter I'm ignoring?
I have the feeling that is something related to fixation, but I'm confused about the nuclear actin. I read that phallodin shouldn't bind to nuclear actin, unless cells are stressed (Nuclear actin dynamics – From form to function, 2008), but I'm ignoring which stress cou ld be implied.
 
Thanks in advance.
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Dear Giulia,
My protocol is in the attached paper. It works well in plant, so why not in animal cells?
You need to use another buffer, better for cytoskeletal proteins -probably omitting EGTA-, and include the MBS  stabilization step. Also, try a mounting solution with PBS: glycerol 1:1 plus 0.5% p-phenylenediamine as antifade.
 If you have any question, don't hesitate to contact me.
Good luck,
Manolis Panteris
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Proliferation rate using MTT assay 
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Definately agree with Alomar blue for cellular activity. Second, we have had great success simply using LIVE/DEAD assays on 3D printed porous scaffolds. Simply take images on a fluorescent scope, then quantify.
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I wish to work on mesenchymal dental pulp stem cells.. I need to know the best procedure so that the viability of stem cells is maintained when extracted from dental pulp.
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Hi doc,
A nice place to start will be this article in JOVE . Not exactly the answer to your question but still of help, hopefully. 
Additionally, Razieh Karamzadeh is on researchgate and has been extremely helpful in guiding a beginner like me. 
Good luck with your DPSC isolation
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I want to transduct mouse Adipose Tissue-Derived Mesenchymal Stem Cells with lentiviral that expression GFP buttransduction don't succeed, GFP expression is not detectable .
I use working concentration for polybrene is 8 to 10 μg/ ml.microgram/ml) for transduced For 12 to 14 hours.
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Hi Hori, have you finally got your mADSCs transduced?
thanks
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do cells need some pre-treatment before adding antibodies?
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 Hello Agapi,
If you just need to characterize cells then no pretreatment is required.you just trypsinize the cells, wash in PBS (having 0.5% FBS to block non specific sites) and treat with antibodies of interest for half an hour. As you have two separate labels FITC/PE you can incubate cells in same tube with both antibodies. All other procedure is same just keep in mind to normalise FITC/PE background signal in unstained cells.
Hope it helps !
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I am working with human NSCs and trying to differenciate them, I was recomended PLL as a good coating material. Does someone have experience with PLL or PDL and could tell me something about it. Thanks!
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Hi Juliana,
I used PDL for  culturing HEK293 cells. I prepared a stock solution of 1mg/mL in MilliQ Water, and stored it at -20ºC. 
When I needed coating, I:
 - diluted the stock 1:100 in sterile H20
 - Filtered the solution (in a 0.4 micrometer filter and then in a 0.2micrometer filter);
 - Add enough solution to cover the surface you want to coat;
 - Incubated plates/flasks 2 hours to overnight at RT
 - Removed PDL solution, left for dry in a laminar flow hood (inclined and with the covers off) for 30-90 minutes (until completely dry);
 - Its ready to use, or it can be stored at 4ºC up to 2 months.
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We have a patient who developed ascites with G-CSF during mobilization and I wonder if any body has had such an observation. 
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with over 2000 autologous stem cell mobilizations, i have not seen serosistis with G-CSF mobilization
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I am using gefitinib to inhibit the EGFR. I want to perform RT qPCR on EGFR target genes to make sure the drug is actually working.
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Your MEKK1 sequence is:
>gi|2815887|gb|AF042838.1| Homo sapiens MEK kinase 1 (MEKK1) mRNA, partial cds
CCGAGCCCTGAGGCAGGCGGCGGCGGAGGAGCCCTCAAGGCGAGCAGCGCGCGCGCGGCTGCCGCGGGAC
TGCTGCGGGAGGCGGGCAGCGGGGGCCGCGAGCGGGCGGACTGGCGGCGGCGGCAGCTGCGCAAAGTGCG
GAGTGTGGAGCTGGACCAGCTGCCTGAGCAGCCGCTCTTCCTTGCCGCCTCACCGCCGGCCTCCTCGACT
TCCCCGTCGCCGGAGCCCGCGGACGCAGCGGGGAGTGGGACCGGCTTCCAGCCTGTGGCGGTGCCGCCGC
CCCACGGAGCCGCCAGCCGGCGCGGCGCCCACCTTACCGAGTCGGTGGCGGCGCCGGACAGCGGCGCCTC
GAGTCCCGCAGCGGCCGAGCCCGGGGAGAAGCGGGCGCCCGCCGCCGAGCCGTCTCCTGCAGCGGCCCCC
GCCGGTCGTGAGATGGAGAATAAAGAAACTCTCAAAGGGTTGCACAAGATGGATGATCGTCCAGAGGAAC
GAATGATCAGGGAGAAACTGAAGGCAACCTGTATGCCAGCCTGGAAGCACGAATGGTTGGAAAGGAGAAA
TAGGCGAGGGCCTGTGGTGGTAAAACCAATCCCAGTTAAAGGAGATGGATCTGAAATGAATCACTTAGCA
GCTGAGTCTCCAGGAGAGGTCCAGGCAAGTGCGGCTTCACCAGCTTCCAAAGGCCGACGCAGTCCTTCTC
CTGGCAACTCCCCATCAGGTCGCACAGTGAAATCAGAATCTCCAGGAGTAAGGAGAAAAAGAGTTTCCCC
AGTGCCTTTTCAGAGTGGCAGAATCACACCACCCCGAAGAGCCCCTTCACCAGATGGCTTCTCACCATAT
AGCCCTGAGGAAACAAACCGCCGTGTTAACAAAGTGATGCGGGCCAGACTGTACTTACTGCAGCAGATAG
GGCCTAACTCTTTCCTGATTGGAGGAGACAGCCCAGACAATAAATACCGGGTGTTTATTGGGCCTCAGAA
CTGCAGCTGTGCACATGGAACATTCTGTATTCATCTGCTATTTGTGATGCTCCGGGTGTTTCAACTAGAA
CCTTCAGACCCAATGTTATGGAGAAAAACTTTAAAGAATTTTGAGGTTGAGAGTTTGTTCCAGAAATATC
ACAGTAGGCGTAGCTCAAGGATCAAAGCTCCATCTCGTAACACCATCCAGAAGTTTGTTTCACGCATGTC
AAATTCTCATACATTGTCATCATCTAGTACTTCTACATCTAGTTCAGAAAACAGCATAAAGGATGAAGAG
GAACAGATGTGTCCTATTTGCTTGTTGGGCATGCTTGATGAAGAAAGTCTTACAGTGTGTGAAGACGGCT
GCAGGAACAAGCTGCACCACCACTGCATGTCAATTTGGGCAGAAGAGTGTAGAAGAAATAGAGAACCTTT
AATATGTCCCCTTTGTAGATCTAAGTGGAGATCTCATGATTTCTACAGCCACGAGTTGTCAAGTCCTGTG
GATTCCCCTTCTTCCCTCAGAGCTGCACAGCAGCAAACCGTACAGCAGCAGCCTTTGGCTGGATCACGAA
GGAATCAAGAGAGCAATTTTAACCTTACTCATTATGGAACTCAGCAAATCCCTCCTGCTTACAAAGATTT
AGCTGAGCCATGGATTCAGGTGTTTGGAATGGAACTCGTTGGCTGCTTATTTTCTAGAAACTGGAATGTG
AGAGAGATGGCCCTCAGGCGTCTTTCCCATGATGTCAGTGGGGCCCTGCTGTTGGCAAATGGGGAGAGCA
CTGGAAATTCTGGGGGCAGCAGTGGAAGCAGCCCGAGTGGGGGAGCCACCAGTGGGTCTTCCCAGACCAG
TATCTCAGGAGATGTGGTGGAGGCATGCTGCAGCGTTCTGTCAATGGTCTGTGCTGACCCTGTCTACAAA
GTGTACGTTGCTGCTTTAAAAACATTGAGAGCCATGCTGGTATATACTCCTTGCCACAGTTTAGCGGAAA
GAATCAAACTTCAGAGACTTCTCCAGCCAGTTGTAGACACCATCCTAGTCAAATGTGCAGATGCCAATAG
CCGCACAAGTCAGCTGTCCATATCAACACTGTTGGAACTGTGCAAAGGCCAAGCAGGAGAGTTGGCAGTT
GGCAGAGAAATACTAAAAGCTGGATCCATTGGTATTGGTGGTGTTGATTATGTCTTAAATTGTATTCTTG
GAAACCAAACTGAATCAAACAATTGGCAAGAACTTCTTGGCCGCCTTTGTCTTATAGATAGACTGTTGTT
GGAATTTCCTGCTGAATTTTATCCTCATATTGTCAGTACTGATGTTTCACAAGCTGAGCCTGTTGAAATC
AGGTATAAGAAGCTGCTGTCCCTCTTAACCTTTGCTTTGCAGTCCATTGATAATTCCCACTCAATGGTTG
GCAAACTTTCCAGAAGGATCTACTTGAGTTCTGCAAGAATGGTTACTACAGTACCCCATGTGTTTTCAAA
ACTGTTAGAAATGCTGAGTGTTTCCAGTGTTTCCACTCACTTCACCAGGATGCGTCGCCGTTTGATGGCT
TATGCAGATGAGGTGGAAATTGCCGAAGCCATCCAGTTGGGCGTAGAAGACACTTTACAACGACAACAAC
ACAACAGCTTTTGCAGGCATCTGTTCCCAACAACTATCTGGAAACCACAGAGAACAGTTCCCCTTGAGTG
CACAGTCCATTTAGAGAAAACTGGAAAAGGATTATGTGCTACAAAATTGAGTGCCAGTTCAGAGGACATT
TCTGAGAGACTGGCCAGGATTTCAGTAGGACCTTCTAGTTCAACAACAACAACAACAACAACAACAGAGC
AACCAAAGCCAATGGTTCAAACAAAAGGCAGACCCCACAGTCAGTGTTTGAACTCCTCTCCTTTATCTCA
TCATTCCCAATTAATGTTTCCAGCCTTGTCAACCCCTTCTTCTTCTACCCCATCTGTACCAGCTGGCACT
GCAACAGATGTCTCTAAGCATAGACTTCAGGGATTCATTCCCTGCAGAATACCTTCTGCATCTCCTCAAA
CACAGCGCAAGTTTTCTCTACAATTCCACAGAAACTGTCCTGAAAACAAAGACTCAGATAAACTTTCCCC
AGTCTTTACTCAGTCAAGACCCTTGCCCTCCAGTAACATACACAGGCCAAAGCCATCTCGACCTACCCCA
GGTAATACAAGTAAACAGGGAGATCCCTCAAAAAATAGCATGACACTTGATCTGAACAGTAGTTCCAAAT
GTGATGACAGCTTTGGCTTGAGCAGCAATAGTAGTAATTGCTGTTATACCAGTGACGAGACAGTGTTCAC
CCCAGTAGAGGAGAAATGCAGATTAGATGTCAATACAGAGCTCAACTCCAGTATTGAGGACCTTCTTGAA
GCATCTATGCCTTCAAGTGATACAACAGTAACTTTTAAGTCAGAAGTTGCTGTCCTGTCTCCTGAAAAGG
CTGAAAATGATGATACCTACAAAGATGATGTGAATCATAATCAAAAGTGCAAAGAGAAGATGGAAGCTGA
AGAAGAAGAAGCTTTAGCAATTGCCATGGCAATGTCAGCGTCTCAGGTAGCCCTCCCCATAGTTCCTCAG
CTGCAGGTTGAAAATGGAGAAGATATCATCATTATTCAACAGGATACACCAGAGACTCTACCAGGACATA
CCAAAGCAAAACAACCGTATAGAGAAGACACTGAATGGCTGAAAGGTCAACAGATAGGCCTTGGAGCATT
TTCTTCTTGTTATCAGGCTCAAGATGTGGGAACTGGAACTTTAATGGCTGTTAAACAGGTGACTTATGTC
AGAAACACATCTTCTGAGCAAGAAGAAGTAGTAGAAGCACTAAGAGAAGAGATAAGAATGATGAGCCATC
TGAATCATCCAAACATCATTAGGATGTTGGGAGCCACGTGTGAGAAGAGCAATTACAATCTCTTCATTGA
ATGGATGGCAGGGGGATCGGTGGCTCATTTGCTGAGTAAATATGGAGCCTTCAAAGAATCAGTAGTTATT
AACTACACTGAACAGTTACTCCGTGGACTTTCGTATCTCCATGAAAACCAAATCATTCACAGAGATGTCA
AAGGTGCCAATTTGCTAATTGACAGCACTGGTCAGAGACTAAGAATTGCAGATTTTGGAGCTGCAGCCAG
GTTGGCATCAAAAGGAACTGGTGCAGGAGAGTTTCAGGGACAATTACTGGGGACAATTGCATTTATGGCA
CCTGAGGTACTAAGAGGTCAACAGTATGGAAGGAGCTGTGATGTATGGAGTGTTGGCTGTGCTATTATAG
AAATGGCTTGTGCAAAACCACCATGGAATGCAGAAAAACACTCCAATCATCTTGCTTTGATATTTAAGAT
TGCTAGTGCAACTACTGCTCCATCGATCCCTTCACATTTGTCTCCTGGTTTACGAGATGTGGCTCTTCGT
TGTTTAGAACTTCAACCTCAGGACAGACCTCCATCAAGAGAGCTACTGAAGCATCCAGTCTTTCGTACTA
CATGGTAGCCAATTATACAGATCAACTACGTAGAAACAGGATGCTCAACAAGAGAAAAAAAACTTGTGGG
GAACCACATTGATATCTACGGCCATGATGCCACTGAACAGCTATGAACGAGGCCAGTGGGGAACCCTTAC
CTAAGTATGTGATTGACAAATCATGATCTGTACCTAAGCTCAGTATGCAAAAGCCCAAACTAGTGCAGAA
ACT
Select the portion of the sequence you want to reproduce and apply the primer program: http://www.ncbi.nlm.nih.gov/tools/primer-blast/index.cgi?ORGANISM=9606&INPUT_SEQUENCE=AF042838.1&LINK_LOC=nuccore
This procedure will give you the adequate primers
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i want to differentiate mesenchymal stem cell into neuron 
do you advise me to use bone morphogenic protein 9 or not .
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 Hello
BMP9 acts to stimulate hepatocyteb proliferation and maintain the cholinergic phenotype within basal forebrain neurons , inhibit hepatic glucose production, inhibit enzymes of lipid metabolism, maintain metabolic homeostasis of iron and synergize in the generation of hematopoietic progenitor cells
References in links 
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Hi everyone. I've been working with MACS for isolation of UCB CD34+ cells for quite sometime and now I have a problem in my hands that I cannot understand or solve. Usually after the isolation, the cell viability is high (at least 80%) and somehow now,me and my colleagues are getting viabilities of 50% and lower.
I have done a systematic study where I have change a set of parameters:
- change Microbead kit
- change column lot
- change type of column (LS and MS)
- Use higher concentration of DNAse for thawing MNCs (50ug/mL)
- change MACS buffer: 2%FBS + 2mM EDTA, instead of 0.5% BSA
- Put MNCs in complete media overnight at 4ºC or at 37ºC
Still, no improvements were seen...
We use frozen MNCs in recovery media, that were obtained from Ficoll density gradient separation.
Can please anyone have an idea of how to overcome this? Did this ever happen to anyone?
Thank you for your help!
Márcia
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Hi, Marcia
I had same problem and used a little different protocol from yours.
Here is my thawing medium and protocol;
Thawing medium; DMEM-LG, 1%PEN/STREPT, 0,1%DNase (10mg in 10mL DMEM-LG for DN25 sigma product)
Protocol; (all procedure on ice) frozen cells dissolved immediately in 37C water, then transfer in 50 mL tube, add 100 uL thawing medium and gently shake for 3 minutes, then add 200uL thawing medium and gently shake for 3 minutes, then add 400uL thawing medium and gently shake for 3 minutes, 800uL..., 1600uL, Repeat the protocol until the medium 20 ml. then you can centrifuge the cell. So that aggregate formation is prevented
Also my MACS Buffer;
%0.5 BSA
2mM EDTa
PBS
I hope it helped. Good luck with,,
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I'm working tissue engineering and need Tilapia scale collagen powder raw material for fabrication scaffold , any body knows which company sell that?
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Dear colleague
you can contact this company!
 Address:No.496,Zhongshan Road, Wuhan, Hubei, China
good luck
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The epithelial-cell layer that lines the intestine often needs to be repaired, a process that is initiated by intestinal stem cells, which reside in the crypts in the intestinal wall.
We are puzzled by a case where we excised part of the small bowel transplant and pathology showed extensive ulceration, with only 5% of mucosa preserved, and absence of crypts. Serosa and muscle layers are well preserved.
Would MSCs help regenerate the mucosa? Do you believe the absence of crypts is prohibitory?  
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Interesting question that could be answered perhaps only by trying it.
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Can stem cell implants help schizoaffective disorder?  If so, what is the closest location to Richmond, Virginia?
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There was one study published a couple of years ago from Mount Sinai in Newyork, elaborating on possible course modelling & disease modification via stem cells for schizophrenic patients. 
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I was wondering if anyone could provide me with some information about the cryopreservation of human bone marrow stem cells. 
If you are doing the slow-freeze method, what is the largest volume you can successfully freeze? Every article I've come across always mentions volume sizes of 1-2 mL, and are usually vague about anything larger than that. 
I've also seen some variance in optimal freezing cell concentrations. 
Is it possible to freeze a volume of cells in the 125-250 mL range? What preserving reagents do you recommend (serum-free)? What cell concentration would be recommended?
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1 million MSCs/ mL using culture medium and DMSO 10%.
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I'm performing a western blot testing for alpha-SMA. I purchased the antibody from abcam (ab5694), and was wondering if it could be incubated at room temperature; and if so, how long it should be incubated? 
My understanding is that certain antibodies can degrade at room temperature. Therefore, I wanted to see if someone had already figured out the optimal time for primary antibody incubation. 
Thanks! 
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Thank you everyone!
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Hello.
As the title describes, we are looking for the BL21 E.coli strain to use it for a demonstration and experimentation with bacteria and protein isolation in some high school classes in Biology lesson.
Does anyone know a way to get access at those cells ? Is there any institute or university or even a person that can send in Europe and more specific in Greece some cells in a micro-tube ? 
Thank you very much.
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Hi Nick,
you will need chemically competent BL21 cells for your experiments and I'm not sure if everything you need to make competent cells is available at a high school lab.
Therefore, it will be the easiest solution to just purchase competent cells from a company such as NEB:
Best,
Sebastian
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Hello everyone,
I currently use Sendai virus to reprogram my fibroblasts and PBMC to iPSCs. As I have translational aspirations, I need to switch to other approaches. Any thoughts about episomal plasmids? or other non integrative methods? What do you do in your labs?
Thank you!