Science topic

Solvents - Science topic

Solvents are liquids that dissolve other substances (solutes), generally solids, without any change in chemical composition, as, water containing sugar. (Grant & Hackh's Chemical Dictionary, 5th ed)
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Welcome I need help with solving a certain problem. Maybe someone had the same problem as mine and have a tip. I have to prepare a calibration curves and make pharmacokinetic analize piperidine derivatives, which were synthesied. Purity all this compounds at least is 98%. They are free basis, acids or their hydrochlorid salts. During the preparation of the calibration curves compounds as a free form basis/acids, I noticed the appearance of two peaks (new in the dead volume and second in appropriate elution time). Peaks area of new peak increase with injected volume. All hydrochlorid salts eluted as a one peak in adequate elution time. Concentration probes: less than 0,2 mg/ml. Solvent used: for salts: water or water/ACN 1:1; for free: MeOH (they don’t disolve in water or water/MeOH mix and water/ACN mix) Injection volume: 1-10 µl. Column: Kinetex 2.6µm PS C18 100A, 100×2,1 mm Solvent A: water with 0,2% TFA (initial TFA concentration was 0,1%) Solvent B: ACN with 0,2% TFA (initial TFA concentration was 0,1%) Flow rate: 0,5 ml/min Also i tried on other column: Accucore RP-MS 100×2,1 mm (changing column helps a little, but many of free forms still have two peaks in chromatogram) Solvent A: 5% water/ACN with 0,2% TFA Solvent B: ACN with 0,2% TFA Flow rate: 0,5 ml/min Probabilities: - add buffer - solvent is so strong - altering the colmun but I don’t know which one will be better.
For me, the most interesting thing is when the same compound as a hydrochlorid salt elute as one peak, and as a free basic/acid elute in two peaks. Why some molecules, of the same compound have retention and interact with stationary phase and other moleculse say: "I dont like you, i'm out". Column isn't overloaded. I thought that additions in firts column have impact on retention and are saturating, but when i changed a column on "typical" C18 I observed two peaks. Please help.
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The appearance of two peaks for piperidine derivatives in their free base/acid forms may be due to differential ionization or interaction with the stationary phase; consider adjusting the mobile phase pH, adding buffers, or using a different column chemistry. Implementing gradient elution and optimizing injection volumes may also help improve separation and resolve the peaks.
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I have synthesized graphene quantum dots, whose precursor is citric acid, and I dissolved it in a mixture of dimethylformamide and ethanol solvents and obtained it during the solvothermal reaction, so I could not dry the resulting solution, what can I do cause I could not dry it at 40 C?
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@Paul Körner yes first I dissolved citric acid in the solution of dmf and EtOH then I put it in an ultrasound to mix well
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Want to know quantity of callus used, and types of solvents for extraction process.
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For LC-MS analysis, use about 2 grams of dried wild plant and callus samples, extracting with methanol at a ratio of 1:5 to 1:10. After soaking overnight, filter and concentrate the extracts for comparison.
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Hello!
I am looking for some hints on how to estimate the kinetics of phase separation in a mixture.
I regard a ternary immiscible blend of two polymers A and B in a common solvent C. The phase diagram of this ternary system has a binodal line and a spinodal line, and if I start inside the unstable region, the system eventually falls into two phases enriched by A and B. If the viscosity is high, this phase separation process takes more time. How could I extimate the typical kinetics of this phase separation?
I've heard of Cahn, Hilliard and Cook theory, but I am not sure if it is applicable. I can't get the idea of how to estimate the time of transition from a metastable state (let's say, prepared by intense mixing) to an equilibrium state. Could you please help me?
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To model the dynamics of phase separation, the nonlinear Cahn-Hilliard-Cook equation is used, which is not related to the molecular details of the system, but includes such macroscopic characteristics as the coefficient of interdiffusion, interphase and free energy. The modeling results allow us to distinguish four stages of the process - early, intermediate, transitional and final, each of which has its own kinetic features.
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Considering that I want the ZIF-8 nanoparticles to be placed inside/ on the fibers (which are electrospining ) and have a slow release when placed on the wound, what is the best way to add the nanoparticles to the polymer solution. The solvent is Hfip test.
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To disperse ZIF-8 nanoparticles in HFIP for incorporation into a polymer electrospinning solution, first functionalize the nanoparticles and create a stable suspension using sonication. Gradually mix this suspension into the polymer solution while adjusting electrospinning parameters to ensure uniform distribution and effective fiber formation.
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Hello! Does anyone know of a protocol for recycling the ionic liquid 1-allyl-3-methylimidazolium chloride (AmimCl)? The solvent was used for a chitosan-containing reaction, and the end product was washed with DI water, so now I am left with AmimCl in water. I trialed a salting-out method, but have not seen any liquid phase separation. What are some other recommendations? Thank you!
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Here are some recent studies and reviews from 2023 onwards that provide detailed protocols and insights into the recycling of ionic liquids, that may help you:
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I am getting gel like constancy and it melts during dying. what might be the reason?
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The gel-like consistency in your microsponges may be due to high polymer concentration, insufficient surfactant, inappropriate stirring speed, or rapid solvent evaporation. Adjusting these factors can help achieve the desired texture.
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I'm doing columm chromatography to isolate and separate secondary metabolic of Garcinia cochinchinensis seeds, but I'm with difficulty, some parts of the samples are adsorving by the silica gel in the moment of the elution. Is it a problem of temperature or used solvent? During the elution, the silica gel is getting colored and when I increase the polarity of the solvent, the silica continues colored and I don't obtained all separated sample. What was supposed to be 40 mg in the fraction, I get 8 mg for example. Is it a room temperature issue and the solvent evaporates creating air bubbles inside the chromatography column? Please, someone help me, I need isolate some compounds to defend my thesis :/. To work with columm chromatography is my main and painful difficulty in obtaining isolated and purified compounds.
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The first thing that comes to mind is that this is not an optimal eluent for the portion of the samples that are adsorbed by silica gel. Temperature, it seems to me, should not affect adsorption that much, unless it is too extreme. It might make sense to change the composition of the eluent or use step elution to extract the adsorbed part of the sample.
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Hello everybody;
I am particularly interested in understanding the specific experimental setup and data acquisition procedures used for the PL measurements of CsMnBr3.
As I am aiming to calculate the Photoluminescence Quantum Yield (PLQY) of CsMnBr3 and conduct other solution-based analyses such as cyclic voltammetry (CV) and UV-Vis spectroscopy, I would greatly appreciate any insights you could provide regarding the following:
  • Sample preparation for PL measurements:
  1. How were the CsMnBr3 samples prepared for PL analysis?
  2. Did you encounter any challenges related to sample deposition (e.g., in acetone or toluene) or potential PL quenching in solvents like water or ethanol?
#perovskite #PL #Photoluminescence #PLQY #Photoluminescece_Quantum_yield
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Pls check whether ur Perovskite is stable in methanol etc...acetone shudn't be used especially in uv vis Or PL...use Lewis bases like chlorobenzene, dmf, dmso.... Most of the Perovskites r stable in Lewis bases
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Greetings! I'm seeking insights from experts in reservoir engineering, particularly those involved in offshore operations. I am currently utilizing Cyclohexane for diluting solid poly(ethylene-co-vinyl acetate) [EVA] in petroleum industry applications, specifically for wax inhibition. I'm interested to know the industry's best practices for solvent selection in offshore environments. What solvents are commonly employed for diluting EVA in reservoir fluid sampling for wax inhibition purposes offshore? Any experiences, recommendations, or alternative solvents that have proven effective would be invaluable to my work. Looking forward to your expertise!
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EVA in depressant-dispersant additives helps to increase the fluidity of highly paraffinic oil and petroleum products. Mechanism of action. The non-polar part of the depressant molecule is embedded in the paraffin crystal, the polar part of the molecule remains outside and repels other paraffin molecu les. Fixation of the polar part of the depressant molecule on the surface of the crystal, while the non-polar part is outside and isolates the paraffin crystals from each other, preventing them from enlarging and creating an ordered structure. Types of additives Depressant: prevents the sticking of paraffin crystals, but cannot prevent the onset of the crystallization process itself (there is a stratification of the transported petroleum product into two fractions - the lower one with paraffins and the upper light one)
Depressant-dispersant: obtained by introducing a dispersant into the depressor, which as a result allows to maximize the fluidity of highly paraffinic oil and petroleum products.
You are going to extract some reservoir fluid. Usually, for testing during drilling, a core sample of the deposit is obtained. It contains capillaries in which oil is located. It is not clear from your question why you need a solvent. EVA is already sold as a gel (glue) with a solvent. It is necessary to use the solvent in which EVA is already dissolved.
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I’m working with collagen protein in powdered form and need to dissolve it properly for SDS-PAGE. What would be the best solvent and protocol to ensure complete dissolution while maintaining the protein's integrity for electrophoresis? Any tips or recommendations would be greatly appreciated
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To prepare a collagen protein sample in powdered form for SDS-PAGE, dissolve the collagen in a suitable buffer that maintains its solubility and integrity. Start by weighing the required amount of collagen powder and dissolving it in a denaturing sample buffer, such as 1X Laemmli buffer (containing SDS and a reducing agent like β-mercaptoethanol or DTT), which breaks down secondary and tertiary structures. Heat the solution at 95°C for 5–10 minutes to ensure complete denaturation. If the collagen is difficult to dissolve, pre-dissolve it in a mild acid solution, such as 0.1 M acetic acid, before adding the sample buffer. Adjust the pH if necessary to avoid precipitation and centrifuge briefly to remove insoluble debris. Ensure the final sample concentration is appropriate for loading onto the gel for clear electrophoresis results.
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I need help with the formation of the cathode slurry for lithium-ion batteries using NMC material. When depositing it onto aluminum foil, it becomes brittle. I am using a ratio of 80:10:10 (NMC:PVDF:Carbon Super P) in NMP as the solvent.
Any suggestions on how to improve this?
I have attached an image of the unsuccessful result.
I appreciate your support.
Kind regards.
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Buenas Ricardo, good to know that the issue was solved :)
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My goal is to use the spin coating technique to deposit a thin film of a material dispersed in an NMP-based solvent on a glass slide. As the solvent is very slippery, its adhesion is very poor over the slide and I am unable to deposit it. How can it be improved?
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Cleaning the substrate thoroughly... Like sonicating with acetone... Then etching with strong acids like HCl or even with aqua regia... Then washing several times with DI water
If possible plasma clean it... (Best way)
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I am trying to analyze short peptides containing hydrophobic aromatic amino acids. The samples are insoluble in water or any organic solvent but only soluble in a very acidic solution such as water with more than 30% acetic acid.
So, in this case, I made a 20% acetic acid in DI water, which has a very low pH (1.8). I used it to dissolve my sample, resulting in a 0.1 mg/ml concentration. The HPLC mobile phase, however, is just an isocratic flow of 20% acetonitrile in water. I use a C18-column that tolerates pH in the range of 2-8 and the injection volume is 10 uL.
- Does the C18 column get hydrolyzed when my sample solvent has a pH that is outside the lower limit of the column pH range?
- In the case of me using a completely different mobile phase and sample solvent, how does it affect the peak shape? I expect to first see an "acetic acid" peak at the front" and then a compound peak and so on.
- Also, what happens if my compound is soluble in the sample solvent but much less soluble or insoluble in the mobile phase?
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Yes, the pH of the sample solvent does indeed matter in HPLC. It affects the retention time and peak shape
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Hello,
I have installed a new column on my GC. When I started to work with it, initially by passing only the solvent (heptane), the chromatograms are not looking as expected, as you can see in the attached file. Do you have any idea what could be the problem?
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Unexpected chromatograms after installing a new GC column may result from improper installation, insufficient conditioning, or incorrect temperature settings. To resolve these issues, check column trimming, installation height, and sample injection techniques.
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Question:I am conducting computational research on a ketone structure that contains two tetrazole rings and a carbon-oxygen bridge (CO). My goal is to remove the CO group and achieve a self-coupled product, similar to TKX-50, which involves the coupling of the tetrazole rings. However, I am encountering high energy barriers in this process, making it challenging to achieve the desired transformation.
Has anyone encountered similar challenges in overcoming high energy barriers during the removal of CO in similar systems? I am particularly interested in computational methods or strategies that can help lower these barriers, facilitate the self-coupling of the tetrazole rings, and provide insights into optimizing the reaction mechanism.
Additionally, any suggestions regarding non-metalic strategies, solvent conditions, or electronic modifications that may aid in lowering the activation energy would be greatly appreciated.
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You can reduce carbonyl group by wolff-kishner reduction by using hydrazine with sodium hydroxide.
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Moreover, do you first use a solvent (such as hexane or xylene) to remove the adhesive on the specimens, or do you work directly by taking the specimens from the sticky plate?
Thank you
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We do not undertake any DNA extraction
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Hi. i have a molecule it has both amide and ester bond. When i want to get second amide bond with ester part of the molecule by an amine, but it attacks to the amide bond also. In which conditions (temp, solvent, catalyst etc.) i can protect the first amide bond and make aminolysis reaction favour.
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Maybe need to try with another coupling reagents like HATU, T3P, ByBOP, DMTMM, EEDQ etc.
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is solvent system that produce distinct bands better or the one that spread the compounds over the plate as a smear ? . on which of the photos attached right or left TLC profile is showing better separation? As i read that the distinct bands mean better separation (as shown on the left photo) but they may also many compounds are co-eluted together and in the TLC profile giving one band . i doubt also that on the right TLC profile , the bands are spread more and this may mean that the polarity by this solvent system allowed good separation of the compounds of different polarities, achieving different Rf values on the TLC plate so please give me your opnion in that regard. Thanks
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as far as I can tell from the photos, both systems are not good enough. They do not provide sufficient separation of the components, moreover, the lower spot is clearly not in the analytical region for Rf calculation. I would advise further eluent selection in order to obtain clearer spots of the separated substances. If there are a lot of spots or the banding on the chromatogram persists, I would suggest using two-step chromatography with a 90-degree plate rotation
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BN nanoparticle, proper solvent, DMAc
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you surely do not want to dissolve your particles, because dissolving them means lose the particles. You might want to disperse them.
colloidal solution is not a particle solution and can be a micellar solution or a solution of macromolecules
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I need to prepare a stock of 10 mg / ml erythromycin to check the mic value. I am trying to dissolve 0.1g/10 ml of water but i can't dissolve erythromycin in water.
How can i prepare 10 mg/ml stock solution? Do i need to use a solvent that does not have an antibacterial effect other than water?
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The solubility of erythromycin in water is 2mg/ml while in organic solvent its solubility is far better. Therefore it is better to prepare its stock solution in organic solvents.
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In the literature, many studies on measuring antidiabetic activity have used different extraction methods and solvents. (various solvent concentrations also). What kind of extraction method and solvent do you recommend I use for alpha-glucosidase inhibition?
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Majority of plant based amylase and glucosidase inhibitors are actually the polyphenolic compounds, including phenolic acid and flavonoids. For an example, quercetin showed a significant enzyme inhibitory activity as equipotent as standard acarbose and voglibose. Based on that, I will suggest you to go with 70% MeOH for extraction, which will lead to partition of all water soluble phenolic acids and polar secondary metabolites.
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I think most of my compounds are non-polar, I tried solvent system 50dcm:50meoh, cannot separate at all, then add more hexane, using 70dcm:20hex:10meoh, better than before, but I don't know why, is that because non-polar solvent can add more affinity with sephadex? and how to adjust the ratio to get a better separation? at first I thought may be it's because of hexane, but when I add more hexane, like 50dcm:40hex:10meoh, still cannot separate more compounds, now I don't know how to do next step...should i add more meoh? and how does the size exclusion work in different solvent system? anyone can share some knowledge of sephadex lh20...I will be very appreciate it.
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In our laboratory, we prefer 20, 40, 60, 80 and 100 % MeOH based on the solubility of extract/fractions in Sephadex
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After our rotavap, our extract looks like a semi-solid and it is a very small amount. Our research teacher said that we should make the solute (our extract) a liquid before dissolving to a solvent. What are the step by step procedure in converting solid solute into liquid solute? How to calculate the concentration?
Can you please help me? I badly need this today
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A solid may be melt by heating, but be careful for any decomposition. For percent concentrations you must specify "by weight", "by volume", "mole %", etc. In your case I suppose that it is by weight (solid in liquid). For example, 20% corresponds to 20 g in a total weight of 100 g of solution.
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For the sake of recycling electrolyte of a polymer Li-ion battery, the salts like LiPF6 will be recycled with CO2 supercritical extraction method.
But how can we preserve the volatile organic solvent carbonates to be used again, as these solvents start evaporating as soon as a cell is opened?
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Ethylene carbonate is solid at room temperature, propylene carbonate is also very polar and certainly not volatile.
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Au3+ ions spontaneously reduce in water and other solvents like methanol or ethanol without using a reducing agent or any other external trigger.
Ref.
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methanol can be used as reductant.
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Editors: Dr. Ketan Kuperkar, Dr. Dinesh Kumar, Dr. Sapna Raghav, Dr. Anil Kumar, Dr. Mohammad Shahid Publisher: Springer Nature Overview: Deep Eutectic Solvents (DES) are an innovative class of eco-friendly solvents that are gaining increasing attention due to their low toxicity, ease of preparation, and wide range of applications. DES offers promising solutions in organic and inorganic chemistry, materials science, energy storage, electrochemistry, and environmental sustainability. This book will provide an in-depth exploration of DES's latest research, developments, and applications in various scientific and industrial fields. We invite contributions from researchers and professionals to submit chapter proposals on the following themes: History, Classification, and Synthesis of DES Physicochemical Properties of DES Organic and Inorganic Transformations Using DES Advances in Materials Science with DES Extraction and Separation Processes Using DES Biomass Processing and Sustainability with DES Electrochemical Applications of DES Gas Capture and Environmental Applications of DES Food Processing and Pharmaceutical Applications of DES Challenges and Future Directions in DES Research Chapter Proposal Submission: Chapter proposals should be sent to mshahid96@gmail.com and must include the following: Proposed chapter title List of authors A brief abstract (150-200 words) outlining the focus and scope of the chapter Submission Deadline: 21.11.2024
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Dear Dr Abdelkader,
Thank you for your interest in contributing a chapter. Though we have received propsals for most of the chapters, call for chapters is still open.
Please send you chapter proposal. Yes, single author chapter are also acceptable.
Best wishes
Shahid
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Reactants are soluble in only ACN, DMSO and DMF and my product should be insoluble in ACN. The imine bond forming is highly sensitive to water and I tried using Molecular sieves it break when I stir the solution also the conversion of the product is 50%.
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You can certainly use it, and for inspiration: (
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an organic solvent
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What is the background to your query? Why dissolve BaO2?
@Srinivasan: BaO2 dissolves with decomposition in acid.
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Hi, so i found out that there is a crystal formation on my triethylamine bottle. The crystals are light and will fall off the bottle with slight wind. The bottle are pretty much sealed im not really sure whats happening. All i can think is that someone in the lab recently changed the bottle storage from the solvent cabinet to the acid cabinet. Ive read somewhere on reddit that triethylamine cannot be stored together with acid as it can induce some kind of salt formation manifested as crystals. Ive wiped the salt and change its storage place however i wonder what is the salt, is it dangerous? Can i still use the solvent or no.
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I hope you're doing well! I wanted to touch base regarding the triethylamine storage situation. As you Fatin Safiudin know, triethylamine is a strong organic base, and keeping it next to acids is definitely not the best practice. It’s hygroscopic and can react with acidic vapors, especially in confined spaces, leading to the formation of triethylammonium salts on the bottle's exterior. The crystals you’re seeing are likely triethylammonium chloride if it’s near hydrochloric acid vapors, or a similar salt depending on the acid present.
First off, those crystals are generally benign, but it’s a good idea to clean them off to prevent any contamination. If you’ve moved the bottle back to the correct storage away from acids and wiped off the crystals, you’re on the right track! Just remember to use proper ventilation and gloves when handling it to avoid any skin or respiratory irritation.
As for the solvent itself, if the bottle is well-sealed, it should be safe to use. However, keep an eye out for any changes in odor, color, or clarity. If you Fatin Safiudin notice anything unusual, it might be best to discard it to avoid any internal contamination that could affect your reactions.
In short, clean it up, store it properly, and monitor the bottle’s integrity. That should keep everything in check!
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I am trying to get the dry form of streptomyces metabolites and since I will be testing their effect on specific cell lines, i need to dissolve them in a solvent that doesn’t effect the cells .
After getting the media filtrate ( cell free media ), liquid-liquid extraction was performed using ethyl acetate solvent and after shaking, i took the organic layer and dried it.
the problem now is in dissolving the dry ethyl acetate extract , several solvents were tested like DMSO, methanol, distilled water and growth media , but the metabolites didn’t dissolve in any of them .
what could be the possible reason for that ? And what should I do in this case ?
plus when doing the evaporation step I used the rotary evaporator but it was not practical as after evaporation I get a sticking residue which I have to collect using the solvent ethyl acetate again , what is the point of drying the solvent and adding It again to collect the sample afterwards ?
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Sounds like - you have a particular crystal form that won't dissolve (easily) - as said, redissolve in a different solvent, and start over.
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How can I easily determine the amount of dissolved hydrogen in an organic solvent. Are there colorimetric titrations for such problems?
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Dear Kevin Bethke, the classical titration in water is very common.
10.1186/2045-9912-2-1
However, in organic solvents some problems are associated, which is the case for most solutes.
NMR with special setup may be used according to the following paper (I couldn't attach it): "Quantitation and Monitoring of dissolved H2 via flow NMR at ... JY Buser · 2014". My Regards
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solution need for UV Characteristic
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Hello
You can use articles similar to your work. In the experimental part, the materials, methods and apparatus used are described. For example, you can refer to the following articles.
Role of preparation conditions on the pseudocapacitor properties of SnO2 nanoparticles by co-precipitation method
Synthesis and characterization of SnO2 nanoparticles by co-precipitation method
Synthesis and characterization of tin oxide nanoparticles via the Co-precipitation method
Synthesis of pure SnO2 nanospheres by co-precipitation method
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I used DCM as the solvent. No extra solvent was added. The reaction was steglich esterification.
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Hi!
That´s because the DCU, the byproduct of the DCC is insoluble in DCM, which is great I think ;-)
Filtrate it out, and move on!
Good luck!
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since the reaction is sensitive with the presence of water.
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whate is the best solvent for Glutamic acid
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If you want to design an Ionic Liquid or deep eutectic solvent for lignocellulosic biomass hydrolysis, where to start, any advice will be helpful.
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Designing an ionic liquid (IL) or deep eutectic solvent (DES) for lignocellulosic biomass hydrolysis involves several critical steps. Here’s a structured approach to guide you through the design process:
### 1. Understanding Lignocellulosic Biomass
- **Composition**: Familiarize yourself with the components of lignocellulosic biomass, primarily cellulose, hemicellulose, and lignin. Each component has different solubility and reactivity characteristics.
- **Decomposition Requirements**: Understand the conditions required to break down these components into fermentable sugars. This includes knowledge of optimal temperatures, pressures, and reaction times.
### 2. Identifying Functional Groups
- **Target Functional Groups**: Determine which functional groups in the biomass are key to hydrolysis. For instance, cellulose contains hydroxyl groups that can participate in hydrogen bonding with solvents.
- **Reaction Pathways**: Identify how the IL or DES can facilitate hydrolysis, such as through protonation, coordination, or disruption of hydrogen bonds.
### 3. Selection of Components
- **Ionic Liquids**: Choose cations (e.g., imidazolium, pyridinium) and anions (e.g., acetate, chloride) that can solvate cellulose and hemicellulose effectively.
- **Deep Eutectic Solvents**: Identify hydrogen bond donors (e.g., urea, choline chloride) and acceptors that can form a eutectic mixture with a lower melting point. DESs are often easier to design and synthesize than ILs.
### 4. Property Evaluation
- **Solubility Testing**: Evaluate the solubility of lignocellulosic biomass in the chosen IL or DES to ensure effective biomass dissolution.
- **Viscosity and Density**: Consider the physical properties of the solvent, as lower viscosity can enhance mass transfer during hydrolysis.
- **Thermal Stability**: Assess the thermal stability of the IL or DES under hydrolysis conditions.
### 5. Experimental Design
- **Reaction Conditions**: Design experiments to optimize conditions such as temperature, time, and concentration of the solvent.
- **Hydrolysis Yield Measurement**: Develop methods to measure the conversion rates of lignocellulosic biomass to sugars (e.g., HPLC analysis).
### 6. Characterization
- **Chemical Characterization**: Use NMR, FTIR, or MS to characterize the resulting products and confirm the success of hydrolysis.
- **Physical Characterization**: Analyze the physicochemical properties of the IL or DES, including pH, conductivity, and thermal behavior.
### 7. Environmental and Economic Considerations
- **Green Chemistry Principles**: Ensure that the chosen solvents are biodegradable, non-toxic, and safe for the environment.
- **Cost Analysis**: Assess the economic feasibility of using the designed IL or DES on an industrial scale.
### 8. Literature Review
- **Research Existing Work**: Consult existing literature for examples of successful IL and DES formulations used for biomass hydrolysis. This can provide insights into functional groups, synthesis methods, and performance metrics.
### References and Resources
- **Research Papers**: Look for articles focused on ILs and DESs in biomass processing.
- **Patents**: Review patents for innovative formulations and applications.
- **Collaborations**: Engage with researchers and institutions specializing in biomass conversion and solvent design for practical insights.
By following these steps, you can systematically design and evaluate ionic liquids or deep eutectic solvents tailored for lignocellulosic biomass hydrolysis.
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Dear Community,
I have a molecule with an aldehyd group that I want to reduce to the alcohol. The molecule also has two esther groups. When I react the molecule with NaBH4 (1 eq.) under soft conditions (room temperature, 3h) no reduction is taking place, under harsh conditions (heat, over night) also the esther groups are reduced. [Solvent THF in both cases]
Does anyone have a recommendation for suitable reaction conditions for NaBH4 reduction? Or experience with NaBH4 reductions?
Best regards,
Christian
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Christian Schnurr There is evidence of ester reduction in systems using NaBH₄-MeOH and THF, as reported in this study: Jorge C. S. da Costa et al., Arkivoc, 2006, 1, pp. 128-133. DOI:10.3998/ark.5550190.0007.115. In my undergraduate thesis (2021), I worked on the reductive amination of an aldehyde using 2.0 equivalents of NaBH₄ in an acidic medium (with 10 equivalents of acetic acid (AcOH)), but in an ice bath (0 ºC). You could try optimizing the reaction conditions. Additional conditions are also discussed in this work: Periasamy, M., Thirumalaikumar, M., 2000. J. Organomet. Chem. 609, 1-2, 137-151.
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I want to prepare the compound 2,4-Di-tert-butylphenol (2,4-DTBP) for an MTT assay on MCF-7 cells
I want the drug preparation method, all detail like how much from powder compound and solvent also the serial dilutions and how to calculate all that
Thank you
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Step 1: Determine the Desired Stock Concentration
  1. Choose a high stock concentration for 2,4-DTBP that can easily be diluted for your assay. A common stock concentration for many assays is 10 mM.
  2. Calculate the amount of 2,4-DTBP required to make this concentration.
Step 2: Calculate the Amount of 2,4-DTBP for the Stock Solution
  • The molecular weight of 2,4-DTBP = 206.33 g/mol.
  • To make a 10 mM stock solution in DMSO: calculate
Step 3: Prepare Working Solutions for the MTT Assay
Decide on the final concentrations of 2,4-DTBP you want to test on MCF-7 cells in the MTT assay, e.g., 0.1 µM, 1 µM, 10 µM, and 50 µM.
  1. Start with the 10 mM stock solution you prepared.
  2. Perform serial dilutions in DMSO to achieve intermediate working concentrations.
Example of Serial Dilutions as follows
Let’s go step-by-step to make working solutions from the 10 mM stock:
  1. 1 mM Working Solution: Dilute the 10 mM stock 1:10.Mix 100 µL of 10 mM stock with 900 µL of DMSO.
  2. 100 µM Working Solution: Dilute the 1 mM working solution 1:10.Mix 100 µL of the 1 mM solution with 900 µL of DMSO.
  3. 10 µM Working Solution: Dilute the 100 µM solution 1:10.Mix 100 µL of the 100 µM solution with 900 µL of DMSO.
  4. 1 µM Working Solution: Dilute the 10 µM solution 1:10.Mix 100 µL of the 10 µM solution with 900 µL of DMSO.
These working solutions allow you to add small amounts to your cell culture medium to achieve the final concentrations needed for the MTT assay.
Step 4: Calculate Final Concentrations in Cell Culture Medium
  1. Determine the volume of the drug solution to add to your cell culture wells to achieve the desired final concentration.
  2. For example, if you have 100 µL of cell culture medium per well, and you want a final concentration of 10 µM:Use the 10 µM working solution prepared in the previous step. Add 1 µL of the 10 µM working solution to each well with 100 µL of medium to reach a final concentration of 0.1 µM.
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Hello everyone,
I am having difficulties in purifying a polymer I synthesized through ring opening copolymerizarion of anydride and epoxide.
I am using a long chain alkyl succinic anhydride. I have used DCM and hexanes, but to no avail.
can anyone suggest a suitable solvent?
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Dear Riswat Musbau, you can use precipitation via the solvent/nonsolvent of couple, chloroform/methanol, as it is done in the attached file. My Regards
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Hello everyone,
I am a chemistry student working on my graduation project focusing on transition metal acetylacetonate complexes, specifically Fe, Mn, and Cu. I am looking for the best solvents to use for preparing solutions for electrical conductivity (EC) and UV measurements.
If anyone has experience or suggestions regarding suitable solvents or any tips on preparing these solutions, I would greatly appreciate your input!
Thank you in advance!
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Hi,
I would recommend using the same solvent for both measurements. FYI I would expect most M(acac)n to have no conductivity, but if you mean electrochemistry (CV) then acetonitrile, DMF, or DMSO would work for both e-chem and UV-Vis.
-Kyle
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I am currently simulating the extraction of 1,3-butadiene using NMP solvent (BASF) in Aspen Plus. I am encountering difficulties when entering values for the binary parameters. I have referred to the information provided in a specific paper for these values, but the results do not align as expected. Could someone please assist me with correctly inputting these parameters or provide guidance on where to find accurate data? Your help would be greatly appreciated. Thank you.
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you can deploy Copilot Simulating the extraction of 1,3-butadiene using NMP (N-methyl-2-pyrrolidone) in Aspen Plus can indeed be tricky, especially when it comes to entering accurate binary parameters. Here are some steps and tips to help you get the correct values and improve your simulation results:
Steps to Input Binary Parameters in Aspen Plus:
  1. Thermodynamic Model Selection: Ensure you are using the appropriate thermodynamic model. For 1,3-butadiene and NMP, the NRTL (Non-Random Two-Liquid) model is commonly used2.
  2. Binary Interaction Parameters: If the binary interaction parameters are not available in Aspen Plus, you can estimate them using the UNIFAC method or refer to literature values. The paper you mentioned might have used the UNIFAC method to estimate these parameters.
  3. Entering Parameters: Go to the Properties section in Aspen Plus. Select the Binary Interaction Parameters tab. Enter the interaction parameters for the NRTL model. These parameters include Aij, Aji, Bij, Bji, Cij, and Cji.
  4. Validation: Validate the entered parameters by comparing the simulation results with experimental data or literature values. Adjust the parameters if necessary to improve the accuracy of your simulation.
Additional Tips:
  • Check Literature: Look for recent studies or articles that provide binary interaction parameters for 1,3-butadiene and NMP. These can be more accurate than estimated values.
  • Consult Databases: Use chemical engineering databases or software tools that provide thermodynamic data and binary interaction parameters.
  • Simulation Settings: Ensure that all other simulation settings, such as temperature, pressure, and flow rates, are correctly set according to your process conditions.
References:
  1. Simulation of 1,3-butadiene extractive distillation process using N-methyl-2-pyrrolidone solvent: This paper discusses the use of the NRTL model and the estimation of binary parameters using the UNIFAC method. Korean Journal of Chemical Engineering
  2. Modeling and Simulation of 1,3 Butadiene Extraction Process: This study provides insights into the simulation of 1,3-butadiene extraction using NMP in Aspen Plus AIChE
  3. https://www.cheric.org/PDF/KJChE/KC29/KC29-11-1493.pdf
Good luck
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My team is trying to synthesize EuFeO3 using hydrothermal method. In the process we need to make a dissolved solution of Eu(NO3)3 · 5H2O. We have tried nano water, Ethanol and acidic medium. But All the solvent does not seem to work to dissolve Eu(NO3)3 · 5H2O. Can anyone please tell me a solvent which I can use?
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Dear Rafatul,
As it was already pointed out, Europium(III) nitrate it well soluble in water. However, Eu3+ tend to precipitate as Eu(OH)3 from water, thus you should acidify, e.g. by HNO3, the solution to be sure, that no Eurpium hydroxide is formed.
All the best for your research!
Thomas
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I have synthesized a film containing biopolymer(Soluble in DMSO) and TiO2 nanoparticles what solvent would be perfect to dissolve it ?
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It depends upon the polymer you used. Later on separate the film polymer from the NP.
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Using pyridine as a solvent, I carried out the di-imide reduction process using K2CO3 and p-tosylhydrazine. the formation of bacteriochlorin was confirmed after the appearance of an absorption peak at 749 nm in UV-vis spectra.
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You can check by adding stabilizers like ascorbic acid or BHT.
Conduct synthesis and storage under nitrogen or argon.
Switch solvent to DMSO or DMF and store at low temperatures (0–4°C).
Stabilize with metal ions like Zn²⁺.
Add bulky or electron-donating groups to shield reactive sites.
These can effectively minimize oxidation
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Hi everyone
I am working on MCF7 cell for anti-cancer purpose and I want to prepare the drug (secondary metabolites extracted from Aspergillus niger but these compounds didn’t identify yet) and I already downloaded my compounds with silver nanoparticles
My first question is which solvent is better with these compounds with nanoparticles is DMSO or Ethanol or FBS? or PPS And I want the exactly preparation method how i calculate the the quantities of compound powder and the quantity of solvent all these details
my second question is how exactly prepared like if there is centrifuge or vortex or filter (i want details )
Thank you
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Nail Besli I downloaded my compounds with silver nanoparticles by green synthesis and I don't know yet which the name of the compound yet I deal with an unknown compound
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Is there any solvent in which polyethylene(in powder/fiber form) is fairly soluble?
solvent other than xylene.
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Dear Tooba Abdul Ghaffar, PE is fairly soluble only at high temperatures (crystallinity and chains compactness work against ease of solubility). So, it is wise to try high boiling hydrocarbon solvents, such as naphta. My Regards
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I have a substance (Funalenone "1mg") from Aspergillus niger in powder form that I want to prepare to use in an MTT assay on (MCF-7 cell line). How do I prepare it and what is the best solvent for it?
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Hello Areej Alshamer,
Funalenone is soluble in DMSO. Make a stock solution of Funalenone of a higher concentration say 100mM in 100%DMSO, and make a series of dilutions from the stock (say 1nM to 100uM) using culture media or aqueous buffer. Please note that the final concentration of DMSO when you add Funalenone to the cells should be less than or equal to 0.1% DMSO in order to avoid toxicity caused to the cells by DMSO. Treat the cells with at least five dilutions of Funalenone.
If you need the MTT protocol, I have provided one below.
1. Plate the MCF-7 in a 96-well plate format at a desired cell density such that they are 80% confluent on the day of readout. If cells are overconfluent on the final day of the assay, you may end up with inaccurate results. So, optimize the seeding density for the 96-well plate format before you perform the MTT assay.
2. After 24 hours, when the cells have attached to the substratum, treat the cells with Funalenone by changing the media with treatment media at various concentration ranging from 1nM to 100uM (at least 5 concentrations).
3. Incubate the cells with the treatment media for 24, 48 and 72 hours.
4. After the treatment period, aspirate the treatment media and add MTT reagent to a final concentration of 0.2 to 0.5mg/ml and incubate in the dark for 1 to 4 hours for the formation of formazan crystals.
5. After incubation, solubilize the crystals into a colored solution with the solubilizing solution which may include either dimethyl sulfoxide or acidified isopropanol solution, or a solution of 10% SDS in 0.01M hydrochloric acid.
6. Measure the absorbance at a wavelength of 570 nm.
7. IC50 value may be calculated from the graph constructed by plotting cell survival versus Funalenone concentration.
Please note that IC50 stands for half-maximal inhibitory concentration, and it's a measure of how much of a drug is needed to inhibit a biological process by half. It is a widely used and informative way to measure a drug's efficacy and potency.
Good Luck!
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Using ethanol as the extraction solvent based on initial experiments. For dissolving DPPH, I am currently using methanol. Should I expect any differences if I were to use ethanol instead?
4o
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Using the same solvent for both extraction and the DPPH assay ensures consistency and prevents solvent-related interactions that might interfere with the antioxidant activity measurement.
So, I suggest you use ethanol as the most suitable solvent in this case.
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we are tried all different concentrations of polymer (Polysulfone) and solvents (NMP & DMF) to synthesis FO membrane. but unfortunately every time polymer penetration occurs across the fabric that results in poor water flux in FO testing.
kindly guide a way through which we can avoid penetration of solvent across the support fabric.
thank you
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First of all, sorry for late response.
In our work, we applied different types of polymeric hydrogels, and we did not noticed any penetration of the particles.
According to our experimental work and our readings, this issue does not exist in the application of hydrogels as draw agents because it is a solid dry material, which swells with water without dissolution.
The phenomenon of reverse diffusion of solutes occurs when solutions are applied as draw agents, and it is called reverse solute flux. This issue is widely discussed in previous studies.
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Hi All,
I am currently using GROMACS to simulate high salt concentrations but I am running into an issue with gmx genion. If I have a 30x30x30nm box and want to use -conc to bring it to say 4M, then I encounter the error: Not enough replaceable solvent molecules! Any thoughts or adivice are greatly appreciated. Thank you.
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Adding an "-rmin xx " to the genion command also works.
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I am synthesizing an organic compound (isoquinolinone) that has both trans and cis isomers, which are very similar in structure. Despite trying various solvent ratios for separation, I have not been successful. What alternative methods or techniques could you suggest for effectively separating these isomers?
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you can deploy Two Minute Separation of the cis- and trans-Isomers of Vitamin K1 without Heptane, Chlorinated Solvents, or Acetonitrile
also some advices from AI Here are a few alternative methods you might consider for separating trans and cis isomers of isoquinolinone:
  1. Chiral Chromatography: This technique uses a chiral stationary phase to separate enantiomers and geometric isomers based on their interactions with the chiral environment12. It's particularly useful for compounds with subtle structural differences.
  2. Supercritical Fluid Chromatography (SFC): SFC uses supercritical CO₂ as the mobile phase, which can offer better resolution for isomers compared to traditional liquid chromatography3. It's also environmentally friendly and efficient.
  3. High-Performance Liquid Chromatography (HPLC): Using a specialized column, such as a C18 or silica column, with an appropriate gradient of solvents might help achieve better separation2.
  4. Gas Chromatography (GC): If the isomers are volatile, GC can be an effective method. You can use a non-polar or slightly polar stationary phase to achieve separation.
  5. Crystallization: Sometimes, crystallizing the mixture under different conditions (temperature, solvent, etc.) can lead to the selective crystallization of one isomer over the other.
  6. Preparative TLC (Thin-Layer Chromatography): This method can be used for small-scale separations. By optimizing the solvent system, you might achieve better separation.
  7. Recrystallization: If the isomers have different solubilities in various solvents, recrystallization can be a useful method to separate them.
Separation of Isomers of Vitamin K1 Using Normal Phase HPLC
Separation of Isomers of Vitamin K1 Using Normal Phase HPLC (thermofisher.com)
Best wishes
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When I use vaspsol calculation in of a alcohol in presence of solvent ( H2O ) that OH bond of alcohol always breaking. What is the reason? I am playing with POTIM, ISMEAR etc. still that problem exists... DO you have any idea why its happening? Or how can I change my INCAR Tags ?
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Check for Computational Convergence Issues: Sometimes, insufficient convergence in electronic structure calculations or inappropriate initial geometry can lead to unexpected bond breakage. Ensuring proper convergence settings and carefully checking the initial molecular configuration may help in addressing this issue.
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Hello. I am currently working on lactide modification, and would like to take this article as reference: A Bifunctional Monomer Derived from Lactide for Toughening Polylactide | Journal of the American Chemical Society (acs.org)
The author uses TLC to monitor the reaction, (Lactide + NBS, substitution of H to Br) but skip the details. I wonder how to visualize lactide/product after TLC since the compound is not UV-active or have any good functional group for dye to react.
Also, I am not sure which solvent should I use for this system.
Appreciate the help!
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Thanks and sorry for the late reply!
I end up just collect/purify samples and use H NMR for that project. I would definitely try your solution for similar projects.
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if we use an organic solvent how we will distinguish that the toxicity is due to the plastic not due to the solvent used. Please guide
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Dear Itrat Zahra, since toxicity is the subject of the study then water is the best choice and avoid halogenated solvents. My Regards
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For better purified extraction of phytosterol (beta-sitosterol) from Cissus quadrangularis and quantity of sample needed for extraction
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Methanol
Is the suitable solvent
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Hello am working on protein recovery from spent grain. I have gotten the protein concentrations using Bradford assay. but I need to determine the total protein content. I used the formula of protein concentration multiplied by volume of extraction solvent. Is this method correct?
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if the concentration of your protein after Bradford evaluation is 0.5mg/mL and the final volume of your extract is 8mL for example !!
Yes you should multiply this concentration by the final volume to have the total amount of the protein in the extract: This is 0.5mg/mL x 8mL = 4mg
But, after doing the previous operation, you should have the amount of spent grain (powder) that you used to carry out the extraction, in order to express the concentration correctly: for example, if 5g of spent grain were used to obtain the above 8mL; then The final amount of protein will be 4mg/5g; this will give 0.8mg of protein/g of spent grain
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use of ethyl acetate as a organic solvent has proven to give good product after extraction along with use of NaCl. Currently with the same system there has been enormous loss which one cannot understand, any thoughts on this
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Loss during extraction with ethyl acetate and NaCl can result from:
  1. Emulsion Formation: Prevent emulsions by adding alcohol, centrifuging, or mixing gently.
  2. Volatile Compound Loss: Use a rotary evaporator at low temperatures under reduced pressure.
  3. Poor Phase Separation: Increase NaCl concentration to improve organic-aqueous separation.
  4. Inadequate pH: Adjust the pH to optimize metabolite partitioning into the organic phase.
  5. Low Solvent Affinity: Test other solvents or mixtures if ethyl acetate isn’t efficient.
  6. Incorrect Solvent Volume: Optimize the solvent-to-sample ratio for better extraction.
These adjustments should reduce the loss and improve extraction efficiency.
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I am working on polymer, i want to make film of PVDF so i made solution at 65 degree but it turns into gel when left for sometime at room temperature in open atmosphere. i am using DMF as solvent. what could be the reason of this gel formation also the film is not transparent as it should be. it is white in color?
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Dear Anshika Passi, if you want to work with high concentrations, other alternative solvents and fruitful information in the following RG thread dealing with a similar question. My Regards
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I am optimizing a molecule in solvents where I am getting the following error:
"Inv3 failed in PCMMkU"
I have searched for the error and got some solutions like using "surface=sas" and "surface=ses", however, none of these solved the problem.
Can anyone suggest any other alternative solution?
Thanks in advance.
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add this line in your input file:
surface=sas
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is it safe to use for extraction purpose?
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Yes, isopropyl alcohol can be used as an extraction solvent for leaves, effectively dissolving a wide range of both polar and non-polar compounds. It is particularly efficient for extracting bioactive compounds compared to other solvents like ethanol.
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Recently, we were trying to synthesize stannous-surfactant based catalyst for our polymerization process. The method it self was simple, by mixing SnCl2 dihydrate solution with surfactant solution until we obtained the precipitate according to literature. Previously we attempted to synthesize it with distilled water as solvent but the result obtained was unsatisfactory. Then we re-attempted the synthesize using ethanol 96% as solvent, but the EDX result showed strong deviation from our theoritical calculations. What could went wrong ? Should we change the metal, surfactant, or solvent ?
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We have obtained and studied such salts. They are obtained better in water. The main contribution to obtaining such salts is made by hydrophobic interaction, i.e. interaction mediated by water.
Your problem is poor determination of tin content by the EDХ method. In this method, organic molecules are decomposed by high electron energy. It is advisable for you to replace the analysis with a chemical method for determining tin, for example, spectrophotometric.
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I am working on extracting BTX from simulated water using deep eutectic solvents.Using DOE, factors of interest such as time, solvent mass fraction, temperature and speed were varied. On carrying out the runs I noticed the DES extracted B, T or maybe just one of then and gave a negative value for xylene.
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@Abdelhak Maghchiche thank you so much for your answer and possible solution. I have had to repeat some measurements but have the same negative result for especially xylene. Under most of the conditions, I get positive extraction for benzene & toluene, then negative extraction for xylene.
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While measuring zeta potential of nanoparticles in 0.001 M NaCl or 0.01MKCl , do we need to adjust pH of solvents to around alkaline conditions or pH won't matter here?
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Why, when I access the site using your link, does it say that it is not available for our country?
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I used betaine-urea solvent (NADES) to increase enzyme activity. This solvent preserved the activity of the enzyme. In the examination of the fluorescence spectrum of the enzyme structure, a decrease in emission intensity was seen.
How can the activity of the enzyme be still maintained by reducing the intensity and opening the structure?
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It is possible that the solvent acted as a fluorescence quencher of surface-accessible fluorescent (mainly tryptophan) residues.
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Can you please advise on what is the proper solvent for DPPG?
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Do you think that everybody knows your research subject? Please be more general and explicit your problem when you ask a question.
I found this molecule (or ion?) dipalmitoylphosphatidylglycerol (DPPG),which is a surfactant. The ionized form is probably not soluble in DCM (dichloromethane).
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dispersion of silver nanoparticle powder
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You can disperse nanoparticles in your essential oil. It seems that you have problems with the stability of the suspension. Make it more viscous by adding a polymer that will not spoil other desirable properties of the suspension.
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I saw in an article that the prepared plant aqueous extract was filtered with a suitable filter paper and then diluted to a certain extent and used directly in experiments. Of course, it is normal to work this way. However, is it correct to express the results in μL/mL? However, how could they have calculated how much to dilute the aqueous extract since it was used directly in the experiment, because a stock solution was not prepared since the extracts were not in powder form?
I also saw such a procedure in another study: "2 g of the plants were weighed and 100 ml of distilled water at 100 ° C was added to them and left to infuse for 10 minutes. After the infusion process was finished, it was filtered through filter paper and the supernatant part was stored at 4 ° C for use in experimental studies." However, while doing the experiments, how could this liquid extract be prepared in concentrations of "1 ml of plant extract with concentrations of 50, 250, 500, 750 and 1000 μg/μl" and 20 µl of plant extracts (0, 10, 50, 250, 500, 1000 µg/ml) in these ratios? Because this extract is in liquid form, so in order to dilute it in µg/ml, doesn't it need to remove the solvent of the extract and turn the extracts into powder?
I am asking these questions because I will be conducting a study on herbal teas and will be using the tea extracts I have prepared in liquid form. Therefore, I need to know the correct method for their use.
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In the context of bioactivity studies using aqueous plant extracts in liquid form, it is imperative to consider the appropriate expression of concentrations and the preparation of test solutions. It is common practice to process plant extracts without evaporating the solvent, thereby maintaining the extract in a liquid state. In such cases, it is appropriate to express concentrations in microlitres per millilitre. This unit represents the volume of extract added to a given volume of medium, which is common practice when testing liquid extracts directly without isolation of individual bioactive components.
A major challenge is the accurate preparation of these extracts for experimental use, particularly when concentrations need to be expressed in units such as µg/µL or µg/mL. Regardless of the liquid state of the extract, dilution to specified concentrations can be achieved without converting the extract to a powdered form. This is known as serial dilution, where the initial extract is treated as a concentrated solution and diluted progressively with water or an alternative solvent. Such dilutions are straightforward when working with volume-to-volume (v/v) ratios, commonly expressed as microlitres of extract per millilitre of solvent.
It is of utmost importance to quantify the dry weight of bioactive compounds in the liquid extract in order to express the concentration in µg/µL or µg/mL. This can be achieved by chemical analysis methods such as gravimetric analysis, spectrophotometry or chromatographic techniques that determine the concentration of specific compounds in the original extract. In the absence of precise knowledge of the mass of bioactive compounds, the concentration can be estimated on the basis of the total soluble solids or active constituents, which can be measured directly in the liquid extract.
For example, if chemical analysis indicates that 1 mL of the liquid extract contains 1000 µg of bioactive compounds, subsequent dilutions can be made accordingly. To prepare a solution with a final concentration of 100 µg/mL, 0.1 mL of extract must be mixed with 0.9 mL of solvent. This approach ensures that accurate and reproducible concentrations can be achieved for bioactivity assays, even without drying the extract.
In summary, when working with liquid extracts, it is both appropriate and widely accepted to express results in µL/mL. However, conversion to µg/ml or similar units requires prior quantification of the active components in the extract. To ensure accurate and consistent experimental conditions, especially when dealing with complex herbal infusions or tea extracts in bioactivity studies, it is essential to employ proper chemical analysis and to follow careful dilution protocols.
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Hello everyone,
I am facing a consistent issue in my NMR spectra with an unwanted peak appearing at 1.25 ppm. This peak seems to vary with the amount of sample: it becomes more pronounced with smaller sample amounts and diminishes when the sample amount is larger.
Here are some details about my attempts to resolve this issue:
1. Ensured the purity of my solvent.
2. Thoroughly cleaned the NMR tubes.
3. Used fresh samples.
4. Heated the samples in an oven at 100°C.
Despite these efforts, the peak persists. Could anyone provide insights into the potential sources of this peak and suggest effective strategies to eliminate it?
Thank you in advance for your assistance!
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The impurity could be t-butanol. We occasionally see this as an impurity in our analyses. In D2O it shows as a singlet at 1.25 ppm. We are not 100% sure about the source of the contamination, but it is likely from the coating on disposable centrifuge tubes and pipette tips.
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Hello everyone,
I am running a DFT calculation on a cationic molecule that was optimized in the gas phase, and I am trying to calculate frequencies in a solvent. My problem is that my calculation stops almost immediately without any error message. I tried both increasing and lowering the %mem and %nprocshared, but it doesn’t seem to make any difference. It also doesn’t seem to be a problem of free memory. I will add the start of the input file and the output file.
Any suggestions are greatly appreciated.
The input file:
%nprocshared=4
%mem=4GB
%chk=posmetabutylsolvent.chk
# freq geom=connectivity scrf=(cpcm,solvent=chloroform) bp86 def2svp empiricaldispersion=gd3 scf=xqc
Title card required
1 1
The outputfile (log) ends in:
Error on total polarization charges = 0.01698
SCF Done: E(RB-P86) = -1697.90030406 A.U. after 18 cycles
NFock= 18 Conv=0.22D-08 -V/T= 2.0122
QCSCF skips out because SCF is already converged.
Range of M.O.s used for correlation: 1 778
NBasis= 778 NAE= 139 NBE= 139 NFC= 0 NFV= 0
NROrb= 778 NOA= 139 NOB= 139 NVA= 639 NVB= 639
Number of processors reduced to 2 by ecpmxn.
Symmetrizing basis deriv contribution to polar:
IMax=3 JMax=2 DiffMx= 0.00D+00
G2DrvN: will do 82 centers at a time, making 1 passes.
Calling FoFCou, ICntrl= 3507 FMM=T I1Cent= 0 AccDes= 0.00D+00.
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Hi Itay,
I would try first "%nprocshared=1".
Second -I would check where are your chk files stored - maybe you have a permission problem with the path to the chk-files.
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In my lab, we receive dry DNA constructs in a 96 well format plate. We resuspend the DNA using a pipette, adding solvent down each row. I want to use an instrument with a 96channel head to dispense solvent into all the wells at the same time, with tips hovering over the wells instead of dipping into the wells, so that I may re-use the tips. I need to check for splashing or well-to-well contamination due to the use of this instrument.
My idea is to use a powdered form of fluorescein sodium salt, put it in a 96 well plate in a checkerboard format, use the instrument to dispense solvent into all the wells, ensure the dye is dissolved, and then use a plate reader to check for absorption or fluorescence between the wells with dye, and blank wells. Does this experiment make sense? If there is no splashing or well to well contamination due to the 96channel head, I should expect to see fluorescence/ distinct absorbance maxima for the wells with dye while those with only solvent, should not have fluorescence/ different absorption peaks. Also is there a good way to measure out equal but quite small quantities of this dry powder form dye into a plate.
Basically, I need to resuspend a dry material and then take some sort of measurement between blanks/controls and the resuspended material and I need to test this cheaply.
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Continuing on Adam B Shapiro answer I will suggest going 10-fold to 100-fold higher in the wells containing fluorescein in the beginning and adding a buffer to the ones that don't. Simply because if a splash occurs it will be of small volume.
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I used several solvents and measured the absorbency and determined the total phenolic content, but the results were similar after dropping them on the titration curve; What is the reason, please help
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Can you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I appeared to have very large mg/g values compared to Can you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I appeared to have very large mg/g values compared to dCan you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I showed very large mg/g values compared to the studentsCan you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I appeared to have very large mg/g values compared to studies Can you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I appeared to have very large mg/g values compared to studiesCan you help me with that.... I dried the vegetable extract, for example, 20 g was prepared in 200 ml and I got a dry extract weight of 3.2 g. To determine total phenols. I dissolved 1mg in 10 ml of methanol. I took 0.3 ml of the extract with 1.5 reagents and 1.2 ml of sodium carbonate according to the standard method. It was measured at a wavelength of 765 nm. The equation of the calibration curve for gallic acid y = 0.0076 X. The results were shown from 1 to 1.42. I showed very large mg/g values compared to studies.
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Organic solvents like methanol, ethyl acetate... are easy to remove by rotavapor. But, water is difficult! I put my aqueous extract in a beaker inside the oven with a light temperature of 50 ° over 10 hours, and I recovered my crude extract.
Does the lighter temperature of the oven might also damage sensitive substances?
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Yes, you can use an oven with a low temperature to remove water from an aqueous extract.You’ll need to set the oven to a low temperature, typically between 50°C and 80°C (122°F to 176°F), depending on the sensitivity of the extract. Spread the aqueous extract in a shallow, heat-resistant dish or tray to increase the surface area, which helps speed up the evaporation process.
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If you don't understand my question let me know
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When performing thin layer chromatography analysis of calixarene, the solvent systems used include diphenyl ether, toluene, xylene, chloroform and methanol, dichloromethane/methane system, and ethyl acetate and petroleum ether can also be used.
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I need to do some experiment with it in liquid form.
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Anuruddha Mishra My guess is that you want to disperse this material; not dissolve it. If you really want to dissolve it, then there are 2 main ways:
  • In hydrochloric and sulfuric acid, especially when fluorine is present
  • Molten sodium hydroxide
If the former (dispersion) then the 3 steps from a powdered material are wetting (the use of a surfactant as mentioned by John Francis Miller above), separation (the key and difficult step; sonication is the norm), stabilization, if rapid agglomeration occurs after relaxation of sonication (a zeta potential issue that may be solved either with an appropriate concentration of an ionic stabilizer - phosphate e.g. Calgon is normal for inorganic oxides - or sterically with a polymer e.g. 50 kDa PEG or PEI). More on dispersion in this webinar (free registration required):
Dispersion and nanotechnology
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To find an ideal solvent for electrospinning of carboxymethyl chitosan I searched through many articles but most of them included addition of some polymers such as PVA or PEO to the solution (except one by Sohofi et. al 2014). I tried dissolving carboxymethyl chitosan into aqueous solutions including acetic acid, Dimethyl Formamide, DMSO etc. but as a result only droplet spray and arc formation is observed, I'm unable to establish a stable taylor cone jet or nanofibres. Please provide me insights for electrospinning of only Carboxymethyl chitosan without any polymeric addition.
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Please try HFIP
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I work on MCF7 cell cell for anticaner purpose and I wa to do drug preperation
the drug ( secondary metabolites extracted from Aspergillus) My question which solvent is better with these secodary metabolites DMSO or ethonal or FBS ? And I want exactly the method for preparation like if there is a centrfige step or just use virtex and amounts of powder of compounds and amount of solvent all these details
thank you
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The choice of solvent for dissolving secondary metabolites extracted from Aspergillus for use on MCF7 cells can depend on the solubility of the metabolites and the intended use. Here's a general guideline for preparing these compounds:
Solvent Selection
  1. DMSO (Dimethyl Sulfoxide)Advantages: Excellent solvent for many organic compounds, including secondary metabolites. Disadvantages: Can be toxic to cells at higher concentrations. Only at High concentrations. Recommended Use: Typically used at concentrations of ≤0.1% in cell culture to minimize toxicity.
  2. Ethanol Advantages: Good solvent for a wide range of compounds, less toxic than DMSO at higher concentrations. Disadvantages: Can still affect cell viability and behavior at higher concentrations. Recommended Use: Typically used at concentrations of ≤0.1% in cell culture to minimize toxicity.
  3. FBS (Fetal Bovine Serum)Advantages: Biologically relevant, less likely to be toxic to cells. Disadvantages: Limited solubility for many compounds, can introduce variability due to the complex nature of serum. Recommended Use: Typically not used as a primary solvent but can be used to dilute the drug further after initial dissolution in DMSO or ethanol.