Science topic

Seedling - Science topic

Very young plant after GERMINATION of SEEDS.
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I need help with a process and protocol to measure chlorophyll content in Arabidopsis seedlings grown in (-N) media. I also need guidance on how to perform the calculation.
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Katie A. S. Burnette,
Hi, how are you? Thanks for your reply! I haven’t started yet because I don’t know the process. I read that some people use 80% acetone and incubate the seedlings overnight, while others use ethanol without grinding the seedlings for 48 hours and then simply measure the chlorophyll.
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I recently sowed Eruca (Rocket plant) seeds in Murashige and Skoog medium. Unfortunately, most seedlings are etiolated after emergence and their growth is very slow. What could be the reason for this?
Note: The light and temperature conditions are quite suitable, and the seed germination potential is high. When we plant the seeds on a layer of paper towels, all the seedlings are completely green.
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Even if your light conditions are suitable, light may not be able to penetrate the MS medium effectively. This can happen if the medium is too dense or if the seedlings are covered with a layer that blocks light. Make sure the seedlings are not buried too deep and that the medium does not obstruct the light. It would be a good idea to test how the seeds would grow if they were just placed on the surface of the MS...
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Thinking of nursing Mansonia altisima seedlings
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You may need a complete, soluble fertiliser. Monitor the status of your plants using foliar analysis
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I am looking for some suggestions on appllying PAW to the vegetable seedlings for 2 weeks and compare the results with DI water?
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While not yet widely practiced on a large scale, research indicates that some individuals and researchers are indeed experimenting with using Plasma Activated Water (PAW) for daily irrigation of both ornamental and vegetable plants, with studies showing potential benefits like enhanced seed germination, improved plant growth, and increased yield across various crops.
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Hello.
For a research project, I need the following information:
1. What is the most appropriate time of day and season to measure the light intensity of the forest floor? Does ambient temperature interfere with recording light intensity?
2. What quadrature size should we use for sampling plants and seedlings?
3. What software do you recommend for statistical analysis of the interaction of vegetation, light intensity, soil factors, litter depth, and soil organic and mineral elements?
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Thank you for your answer
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Dear colleagues
To do my own research, I need the following two articles. Can any of my colleagues send me these two articles?
Soltani, A., Zeinali, E., Galeshi, S., Latifi, N., 2001. Genetic variation for and interrelationships among seed vigor traits in wheat from the Caspian Sea coast of Iran. Seed Sci. Technol. 29, 653–662.
Soltani, A., Galeshi, S., Zeinali, E., Latifi, N., 2002. Germination, seed reserve utilization and seedling growth of chickpea as affected by salinity and seed size. Seed Sci. Technol. 30, 51–60.
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Dear Farid,
I have no other option for the contact, I am sorry.
Good luck, best regards,
BS
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Hello everyone,
I am currently doing my research on herbicide resistance as part of my Ph.D. studies and plan to use the Chenopodium album as my model plant. However, I have encountered significant challenges with its germination.
Here is a summary of the problem:
  • The seeds of the Chenopodium album are not germinating as expected. Most seeds fail to germinate, and those that do germinate grow poorly.
  • I have already tried several methods to improve germination: Treating the seeds with gibberellin. Subjecting the seeds to cold stratification at 4°C.
  • Unfortunately, neither of these approaches had a noticeable effect on improving germination rates or seedling growth.
I would greatly appreciate any advice, protocols, or suggestions from anyone who has experience working with Chenopodium album or other species with challenging germination requirements. Are there specific pre-treatments or conditions that have proven effective for germinating these seeds?
Thank you in advance for your help!
Best regards, Mona
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  1. Seed Scarification: Use mechanical methods (sandpaper) or chemical scarification (e.g., sulfuric acid for 10-20 minutes) to break the tough seed coat.
  2. Temperature Fluctuations: Try a temperature regime with 20-30°C during the day and 10-15°C at night to simulate natural conditions.
  3. Light Treatment: Ensure seeds are exposed to light during germination, as Chenopodium album seeds are often light-sensitive.
  4. Pre-soaking in Water: Soak seeds in distilled water for 12-24 hours to soften the seed coat and encourage germination.
  5. Use of Plant Growth Regulators (PGRs): Try experimenting with cytokinin or auxin in addition to gibberellin to improve germination.
  6. Fungal Inoculation: Sterilize seeds with a 5% bleach solution to prevent fungal contamination that may hinder germination.
  7. Extended Stratification: Combine cold stratification with a warm period (10°C for 2-3 weeks) to enhance dormancy break.
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What is the source of energy for plants in the seed and seedling stages, prior to photosynthesis? The seeds have lipid, but also substantial carbohydrate. Do they use carbohydrate during germination? Also, general sources say the fatty acids are converted to glucose (using the glyoxylate cycle) to provide an energy source. But that would also require energy; why not just oxidize the fatty acid? The sequence of utilization must be known. My own area is mammailan metaboism, but I just finished reading "The terroir of whiskey" and became interested in how and when grants utilize their energy sources.
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Thanks for that information; it is interesting that the chloroplast development is so early. My question is, prior to the ability to use photosynthesis -- in the early seed or just germination stages -- how does this organism utilize two potential energy sources, starch, and lipid. I was assuming that it only used lipid, but that was because germination triggers the release of enzymes to break down the starch, but I have no references for this. Also, I understand that, with the glycoxylate cycle, it is possible for the lipid to be converted to glucose, but then why should the seed do that? It doesn't need to transport it anywhere. Perhaps a full Krebs cycle is not developed?
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Dear community,
One of our manuscripts has been waiting with the editor for over a year because of the "lack of reviewers." Sadly, the journal editor has repeatedly asked me for reviewer advice. By my heart, I believe in blind peer review, but I'm hopeless at this point. I want to share my manuscript's abstract and ask if anyone is interested in reviewing or advising a reviewer. Thank you in advance!
"Vigorous seedlings guarantee satisfactory production in the forward stages of the vegetation period. This study aimed to evaluate the impact of bio-based rearing water of two mosquito species (Culiseta sp. and Culex sp.) on tomato germination, emergence, and seedling quality. For this purpose, two distinct larval-rearing waters (LRW) (with diverse larval densities), and fry food-applied water (FFW) were used as bio-priming agents. The findings revealed that using bio-based rearing water could enhance the vigor of tomato seeds. When compared to the control group, all Culex sp. derived LRWs had a shorter mean time of germination (MTG). One Culex sp. derived LRW treatment resulted in the shortest MTG (4.35 days), whereas one Culiseta sp. derived LRW treatment resulted in the longest (6.20 days). There were no statistically significant differences in stem length but significant differences in plant length. Plant length was shorter in LRW and FFW than in the control. The stem diameters of plants primed with LRW were generally wider than the control. According to analyses of the plant length, stem length, and stem diameter measurements, the LRW and FFW treatments may have had a reductive influence on plant length but provided significant support for more thick seedlings, which are more beneficial for seedlings. Other germination and growth characteristics (vigor index of germination, emergence percentage, mean time of emergence, vigor index of emergence, plant length, stem length, leaf width, leaf length, stem fresh weight, stem dry weight, root dry weight) did not show significant variation among treatments. The application of LRWs may offer a novel way to improve seedling establishment and tomato growth."
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You need to find another journal
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We want to study the growth and development of plant roots under different soil moisture contents. Considering the advantages and disadvantages of several commonly used water control methods, we would like to seek your help to explore a relatively simple and accurate water control method for potted seedlings.
1. Weighing method. A commonly used method is to determine the amount of lost water through weighing and replenish it in a timely manner. But once there are too many biological replicates in our treatment group, it is time-consuming and labor-intensive, and we spend a long time in the weighing and hydration process. On the other hand, as plants grow, their own weight also changes, making the addition of water to each weighing method unscientific.
2. Moisture monitoring instrument. According to the moisture monitoring instrument, the soil moisture content was detected, but according to the several moisture detection instruments we purchased, it was found that there were accuracy issues. At the same time, the measurement value largely depends on the placement of the sensor probe and the influence of the watering position
3. PEG simulation. We would like to know how long PEG can be maintained, i.e. the validity period during treatment. We may consider combining short-term and long-term water control to determine if long-term testing is feasible.
4. After watering, control the water naturally. It can be used for short-term water control, stopping water supply after initial watering, and observing the plant's response during gradual water loss. But we believe that in this situation, there may not be significant differences in the root system, and a long-term water control situation is needed to make the root system different from the control group.
We sincerely invite everyone to help provide a scientifically feasible method for controlling water in potted seedlings. We are extremely grateful for this.
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Thank you very much for your suggestion. I will consider it carefully.
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I'm wondering how one handles demographic data that are incomplete to estimate status and trend. For example, consider a 5-stage plant population with stages 1) Seed bank, 2) Seedlings 3) Juvenile 4) Vegetative adult 5) Reproductive adult. For several years one might have yearly counts on all of these, but suppose in recent years, only seed bank data were gathered, or only reproductive adult data were gathered, or both. How does one make use of the full set of incomplete data to estimate status and trend for such a population? I had a plant species in mind, but this is a general question that could pertain to any plant or animal species with incomplete yearly stage, size, or age demographic data.
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The standard approach is to restrict the analysis to subjects with complete data on the variables involved in the analysis. The second approach is based on multiple imputation where missing values are replaced by two or more plausible values. The final approach is based on constructing the likelihood based on the incomplete observed data :)
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I am a researcher of Soil science department. 5 months ago I had planted wheat for my research. The research design was split plot design. it has 3 replications, each replication has 2 main plot treatment: Farm yard manure @20t/ha and Biochar @ 20t/ha, and each main plot had 5 treatments:
T1: no N fertilizer,
T2: 100% recommended dose of Prilled urea
T3: 50% recommended dose of Prilled urea
T4: 100% recommended dose of Neem coated urea
T5: 50% recommended dose of Neem Coated Urea
after harvesting of wheat crops, there were wheat crop stubbles left 20 cm above the ground level. The wheat crop residues were not removed and incorporated in the soil after harvesting in April 12. Now in April 20 I had planted Mungbean in the same research trial, and no external fertilizers are used and is grown under residual nutrients of previous planting. The temperature here is 40 degree celcius during sowing of mungbean. I had been thinking to use mungbean as a green manure to increase soil fertility and ground cover in irrigated condition. analysing this prepare suitable research topics that best suits for my research trial.
now after 10 days of sowing there is not enough seedling emergence and i have few seeds remaining that cannot cover all research plots homogenously. i have to take data of biomass of 1m2 from each plot and my re,aining seeds can cover 1m2 area only of each plot out of 12 m2. can i sow seedds to 1 m2 only for the plots that havenot germinated enough seedlings.
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Given the constraints of seed availability and the need to ensure adequate seedling emergence for data collection, it seems reasonable to prioritize sowing the remaining seeds in the plots where seedling emergence has been insufficient. This approach ensures that you can collect data from all plots, even if it means focusing on a smaller area within each plot.
However, before proceeding, consider the following points:
1. Randomization and Replication: Ensure that the decision to sow seeds in specific plots is done randomly within each treatment group to maintain the integrity of your experimental design. Additionally, ensure that you maintain the same number of replications for each treatment group.
2. Data Consistency: Since you're aiming to collect biomass data from 1m² areas, make sure that the areas where you sow additional seeds are representative of the overall plot. Try to select locations within the plot that are similar in terms of soil characteristics and microenvironmental conditions.
3. Documentation: Keep detailed records of which plots received additional seeds and the reasons behind the decision. This documentation will be essential for accurately interpreting and analyzing the data later on.
4. Potential Effects on Results: Recognize that introducing additional seeds to some plots may introduce variability in your data. While this may be unavoidable given the circumstances, it's important to acknowledge and consider this potential impact during data analysis and interpretation.
Given the circumstances, your research trial offers several potential research topics:
1. Impact of Wheat Crop Residues: Evaluate the effects of incorporating wheat crop residues on soil fertility, microbial activity, and subsequent crop growth (in this case, Mungbean). Compare the performance of treatments with and without wheat crop residues.
2. Effectiveness of Green Manure: Assess the efficacy of Mungbean as a green manure in improving soil fertility and crop productivity. Compare soil properties and Mungbean growth parameters across different treatments, particularly focusing on plots with varying levels of previous nutrient inputs.
3. Nitrogen Management Strategies: Investigate the impact of different nitrogen management strategies (e.g., varying doses of Prilled urea and Neem coated urea) on soil nitrogen dynamics, crop nitrogen uptake, and overall crop performance (both wheat and Mungbean).
4. Long-term Soil Health: Explore the long-term effects of organic amendments (Farm yard manure and Biochar) on soil health, including soil structure, nutrient retention, and microbial diversity. Monitor changes in soil properties over multiple cropping seasons to assess the sustainability of these practices.
Each of these research topics can provide valuable insights into optimizing nutrient management, enhancing soil fertility, and promoting sustainable agricultural practices within the context of your research trial.
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I have collected a quarterly data of height and girth for 2 years of the Melia seedlings planted . The data of initial height and Girth of each seedling was also collected. The trial was established in RBD with treatments of VC, FYM and Control. Total 48 seedlings were planted, the trial was divided in 4 blocks and each block contains 12 seedling. (4 seedlings of each treatment). I want to assess the growth performance of seedling under different treatment during course of time. how should I proceed for my analysis . Whether Mixed design ANOVA will be useful here. please suggest
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  1. Data Organization: Organize your data in a way that each row represents a single observation (a seedling in this case), and each column represents a variable (such as height, girth, treatment type, time, block, etc.)2.
  2. Fixed and Random Effects: In your mixed design ANOVA, the treatment type (VC, FYM, Control) would be a fixed effect, while the blocks would be a random effect2. The time (quarterly data for 2 years) would be a repeated measures factor2.
  3. Interaction Effects: You might be interested in the interaction effects between the treatment type and time. This would tell you how the growth performance of seedlings under different treatments changes over time2.
  4. Assumptions Check: Before running the ANOVA, check the assumptions of normality, homogeneity of variances, and sphericity. If these assumptions are violated, you might need to transform your data or use a different statistical test2.
  5. Post-hoc Tests: If you find a significant main effect or interaction effect, you can perform post-hoc tests to find out which specific groups differ from each other2.
  6. Interpretation: Interpret the results in the context of your study. Pay attention to the effect sizes, which tell you the magnitude of the differences between groups, in addition to the p-values2.
Remember, statistical analysis can be complex and it’s always a good idea to consult with a statistician if you’re unsure. Software like SPSS, R, or Python’s statsmodels package can be used to perform mixed design ANOVA1.
As for the growth performance of Melia seedlings, there are studies available that you might find useful34567.
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hello everyone, I am new in chip-seq. Recently I want to try arabidopsis thaliana chip-seq by following this protolcol:
I have applied 2 g of A. thaliana seedling to follow the steps describe above, and I used Qsonica Q125 sonicator instead of Sanyo Soniprep 150. However, I failed to shear DNA into <1000bp, most of the genomic DNA has not been broken (first picture), even after 10 minutes of sonication (70% amplitude, 20s/20s on/off, total on time= 10 minutes)
Actually, before I strated to perform this experiment, I tried to use ~7kb plasmid to test the sonication efficiency, and the result was pretty good (second picture).
what should I do? why my chromatin shearing is not working?
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Yes, the smear is likely RNA. The black arrow seems like gDNA, but it's too close to the well. Did you purify the DNA before loading it onto the gel, either by column or the phenol:chloroform method?
Sonication time really depends on the machine; in my case, it's 30 seconds on, 90 seconds off for 10-15 minutes. RNase is crucial to remove RNA contaminants, ensuring what you observed is sheared DNA.
I wrote a ChIP-qPCR protocol for Arabidopsis, which you can find at https://pubmed.ncbi.nlm.nih.gov/33421000/.
I hope it helps. Good luck.
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I need to get information about the number of chromosomes or DNA content.
I have seedlings from in vitro that were frozen at -20 degrees after liquidation of the culture. They are seedlings from controlled crosses between species.
Classical methods of counting metaphase chromosomes on slides did not work out.
We are considering flow cytometry, although we are concerned that frozen tissue will not be good enough for this.
Do you know any other methods, perhaps more molecular ?
We would appreciate any suggestions for useful protocols.
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Hi Aleksandra, I don't know whether you work with orchids (which is often your target group), but we have an experience with Flow Cytometry of deep-frozen (-70°C) tissues of Dactylorhiza. It worked unless the tissue thawed, it was thus necessary to chop it in the buffer immediatelly after removing from the freezer, and analyse as soon as possible. The results were suitable for interpretation of the ploidy level. The only challenge is the endoreplication, you must check how serious problem it is in seedlings.
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As part of my PhD project I am using sterile micro-propagated potato plants for experiments.
I do this by cutting nodes from a mother plant, growing in full strength MS media supplemented with 2% sucrose, adjusted to pH 6,4 and 0,8% noble agar.
The plants are then grown in the same media in a closed container with a breathable membrane in the lid.
The plants grow fine, but I get a lot of variation in the size of the new seedlings both within each container but especially between containers. Its seems like for some reason plants in some containers are just growing way faster and some are barely growing.
Anyone has experience with how to get homogeneously sized seedlings?
Thanks in advance!
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The cuttings can vary in performance for several factors. Assuming the medium is uniform, two likely factors are microenvironment and the cuttings themselves. Often your growth chamber will have some microenvironment differences (by the door vs in the back, sides vs center. You can change the positions of the containers to try and rotate them through all the different zones. Another possibility is the cuttings themselves. If the nodes vary in thickness or in distance from the main plant you might get performance differences. It could be worth tracking cutting size/distance to see if that is indeed important.
In the meantime, you can set a specific size parameter for your experimental cuttings and try to use uniformly sized and aged plantlets. Just be sure to propagate more than you'll need so you can discard the ones that are too big or too small.
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I want to know how we can avoid the effects of climatic changes during stem cutting in crops. I will cut the mature plants' stems from ground level to get new plantlets, but weather changes may affect the growth of new plantlets. Looking for scientific suggestions.
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Firstly it depends on the crop and the local environment. It is important to use crops and cultivation practices that are acclimated to the local environment. This may require active monitoring of the weather and overall conditions. For example, drought or dry weather require additional irrigation to ensure that plantlets have enough water to grow. Large changes in temperature may require using shade cloth or row covers.
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Dear all,
What are the best methodologies to find out the ectomycorrhizal colonization on roots? I am looking for a publishable methodology to have a tuber sp. percentages of my seedlings.
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There are several methods to quantify ectomycorrhizal colonization on roots, including:
  1. Root staining: This involves staining roots with dyes such as trypan blue, which will stain the fungal structures blue, allowing for visualization and quantification of ectomycorrhizal colonization.
  2. Root observation: This involves careful observation of the roots using a microscope to identify and quantify ectomycorrhizal colonization.
  3. Molecular techniques: PCR-based methods such as quantitative PCR (qPCR) and terminal restriction fragment length polymorphism (T-RFLP) can be used to quantify fungal DNA in roots, providing a measure of ectomycorrhizal colonization.
  4. Image analysis: Images of root systems can be captured and analyzed using software to quantify the percentage of roots colonized by ectomycorrhizal fungi.
It's important to note that different methods may yield different results and that the choice of method will depend on factors such as the specific research question, the resources available, and the expertise of the researcher. Additionally, it's important to follow established protocols and to use appropriate controls to ensure the accuracy and reliability of the results.
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I need the protocols for tagging tropical mangrove seedings. They need to be numbered and last for at least 10 years (3-4 year censuses).  The only tapes I've been able to find are Dymo tapes and I can control the length and punch a hole for securing it to the seedling.  We were looking for something to secure it to the mangrove seedling like zip ties or something similar.  We also need to purchase over 1000 of them, so price is a key issue.  Any suggestion would be greatly appreciated. If you have experience with long term mangrove seedlings surveys, other suggestions would be welcomed too.
Thanks to all,
Alia.
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Andrew's correct to the extent that no label and fixing can be completely relied upon over 10 years, especially in saline conditions and having to withstand wave energy from time to time. Conventionally the label itself could be of metal or engraved plastic, but metals will corrode in seawater and for the latter you'd need an engraving machine. The cheapest would be aluminium 'tree tags', which are small discs (about 3cm across) stamped with a number and that can be bought in the thousands. Perhaps you could paint them with a marine paint to make them more durable. In tree surveys tree tags are generally nailed to the trunk, the nail only partly driven in to allow for radial growth, but I imagine that better options in your case would be to have a loose attachment of wire or cord, or to fix the tag to a stake driven into the substrate adjacent to the tree. Perhaps an engraved wooden label would be best, or an adjacent stake could be engraved (you could then use local materials). A stake would also be easier to find than a label. Finally, if all else fails, you could engrave the tree itself!
Philip
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both the positive and negative effects of shade trees planted along side young cocoa seedlings on the field.
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We are working on extraction of apoplast from 2-week-old Arabidopsis seedlings.
We use vacuum infiltration-centrifugation technique.
Unfortunately, we have not been able to isolate apoplast without cytosolic contamination!
When we run SDS-PAGE, Rubisco bands are found!
Do you have any suggestions for improving our apoplast isolation without cytosolic contamination?
Does anyone have any successful experience with apoplast isolation from Arabidopsis?
Thanks
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Hi Pieter,
I was really excited to hear from you and I appreciate your tips.
I agree that the problem we encountered with the apoplast isolation was caused by seedling damage.
To address this issue, I have tried to apply less pressure during the vacuum infiltration and to reduce the centrifugation speed during the extraction (down to 800 *g). However, since I am working with two-week-old Arabidopsis plants that are cultured in half MS medium, the seedlings are very fragile and easily damaged during apoplast extraction.
My current research is focused on examining the presence of glucosidase enzyme in the apoplast under stress conditions that also exist inside cells. As a result, the cytosolic contamination of the apoplast extract is interfering with our research goals.
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Seedweeds are often a nuisance to sandy beaches, where tourist activities, water sports and swimming are conducted. Tonnes of seaweeds that had failed on the beach are collected and discarded. These biomaterials have immense potential for use in agriculture. Seaweed-based composts are manufactured and used for crop production.
The question articulates around how to use the macroalgae composts, alone or amended by the use of other growing media like perlite, coir etc...
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Seaweeds also contain lots of chloride and trace elements that they have accumulated fro seawater, e.g., As, Cd, I. So use with care on food crops!!
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I need to find out days 75% germination for research of my colleague. I have record of germination count of number of wheat seedling every 2 days from 5th to 15 th days. Is there is any formula that I can apply in the excel sheet or formula to calculate the days to 75% germination?
Or any other method to calculate the days to 75% germination?
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You simply record the day when 75% of seeds have germinated, assuming all seeds are viable (which can be tested prior to the experiment using the flotation test) :)
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Hello,
I am designing the experiment on application of Boron (H3BO3) on seedlings and checking if there's any result in blind plants.
Most teams use units kg/ha, only few mg/L.
I would like to convert the data from kg/ha to mg/L, is it possible? Can you please help me?
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Karolina Kacynel Karolina , The following link relates to "Methods Of Expressing Soil Test Results" from "Palintest" a UK company working in water analysis technology" By my reading they offer two ideas. But could be variations of of another.________ https://www.palintest.com/content-hub/methods-of-expressing-soil-test-results/#:~:text=Using%20these%20relationships%20the%20conversion,present%20as%20mg%2FL%20soil.
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Hi, we are conducting assays on the ubiquitination modification of a protein expressed in wheat seedling leaves. It is difficult to infiltrate the proteasome inhibitor MG132 into the the thin wheat seedling leaves. We want to know if treatment can be conducted by adding MG132 into the seedling culture solution. Can MG132 be absorbed by roots and transported into leaf tissues?
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@Donald Batten Thank you for your response. It seems unfeasible to treat wheat seedling leaves with MG132.
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I have collected several host-specific ecto-mycorrhizal samples from the field and I am willing to inoculate them (Spore suspension) into the same host seedlings to observe growth variation against controlled ones. I am having difficulties comprehending how to inoculate them? I have prepared spore suspension using distilled water dissolving some portion of the fruiting body (crushed). and stored them in refrigerator for later usage. Is my process of preparation good to go or there are more better ways?
Thanks In Advance
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Hello again, new friend Md. Abdur Rahman! Ectomycorrhizal fungi mostly spread with the growth of mycelium in the soil, so a spore suspension would not be the most natural way of inoculating. You could inoculate sterile wheat bran or sterile beet seed, incubate until the substrate is well colonized, and sprinkle that inoculum around the plant you want to infect.
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I have isolated a fungi species from the trunk of a tree species and I want to test whether this is the causal pathogen that created a canker on that tree stem. I am working on polybag seedlings and is confused about how to inoculate the seedlings.
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Speaking as someone who reviews a lot of papers that include pathogenicity tests, I have to ask if this is a pathogenicity test, or something else? It is tricky to use seedlings to prove a symptom seen on mature trees. You could do a stem inoculation, but to do that, you would almost certainly want to create a wound on the stem (like using a cork borer to make a hole) and then add the inoculum. Evaluating a resulting canker will be tricky, because it is such an unnatural system (young plant with wounded trunk). You would need to use a positive and two negative controls. One negative control would be inoculation with water (if you used a spore suspension to inoculate the pathogen) or an agar plug (if you used a culture plug to inoculate the pathogen). The other negative control would be a fungus known not to cause cankers on that host. The positive control would be a pathogen KNOWN to cause cankers on that host. After you incubate the inoculated trees, you would probably be measuring the length of the resulting lesion. The tricky part is that even with the no-inoculum control, there may be a lesion. With the nonpathogen control, there might be a lesion. So how do you evaluate the lesion produced by your test organism? How long is its lesion compared to the known pathogen? If it is comparable, you can suggest that your unknown can cause cankers, and I will more-or-less believe you. But if the lesion length is closer to the one caused by the nonpathogen, I will more-or-less disbelieve you.
Kouadri Mohamed El Amine is suggesting a detached stem pathogenicity test, and as a reviewer I would take a very dim view to that unless you had the proper positive and negative controls. Detached stems are, by definition, stressed plant tissue, and stressed plants behave differently than non-stressed plants. If you had the right controls, however, I would probably be OK.
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What are the Methods available for non-destructive biomass estimation of young Miyawaki plantations (young mixed plantations of tree seedlings with DBH less than 5 cm) in tropical condition?
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I have grown these sunflower seedling in bubble tray and I want to get suggestions, at how many days after showing, I need to transplant them in the field.
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Your seedlings suffer from etiolation, you can start transplanting now or two days later. Wish you luck.
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Saudi Arabia has announced plans to plant 10 billion native trees at a rate of one million per week. That's about 50 million trees a year. Is this really possible in the dry desert of Saudi Arabia? has the water requirement of these trees been calculated? In Iran and Khuzestan, which have more suitable conditions, in the warmer months, seedlings need to be irrigated 3 to 4 times a month. Almost every seedling needs about 1 cubic meter (1000 lit) of water in a year. Thus, 50 million trees in a year need 50 million cubic meters of water. If the amount of water needed to produce seedlings in the Nursery is added to this amount of water, a very large volume of water is needed each year. This amount will double for the second year and triple for the third year. Will this volume of water be easily supplied in the dry desert of Saudi Arabia? It seams, this is impossible with such a large scale! . We have to wait for the result. I hope and pray they succeed. for more information you can see the bellow : https://www.al-monitor.com/originals/2021/05/saudi-arabia-plans-plant-10-billion-trees-desert
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The Saudis are doing it, and if they are native trees local to the area, should only require a dingle watering when planting. We plant tree seedlings by the tens of millions each year in the arid West of the USA and only give them one watering when planting and that is all. The seedlings we plant are very small bare root or grown in Ray Leach "Cone-tainers" (Trademark) as the picture shows.
If you plant anything larger, then those plants would require a lot of water for a period of time to get established.
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A Mango growing publication from University of Florida recommends a total of 1.5-3 lb of 8-3-9-2 fertilizer for example. (680-1360 g)
My growing season is about 6-7 months (~26 weeks) and my fertilizer strength is about twice of the mentioned one 14-6-20-4 so let's just assume that I would need about half of the amount which is 340-680g
I prefer to fertilize every time I water a seedling, which is around 10L each week.
When we do the math we get a dose of 13-26g in each watering which is 1.3-2.6g/L.
Should I be worried about that much fertilizer in the irrigation water? (I'm using the most expensive fertilizers with no chloride)
I have very calcareous sandy soil mostly poor in almost everything.
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Both soil testing and foliar testing can allow the modification of the program to optimize mango nutrition.
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Other than the dead heart?
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The larvae attack the plant, especially the bases of the leaves, and burrow into them, which leads to yellowing of the plant, pallor and poor production. Severe infestation leads to permanent wilting, and the plant can be easily uprooted and an unpleasant odor appears as a result of rotting.
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I am trying to grow rice in a hydroponics system containing 5 % Hoagland's Basal 2 medium (Himedia). My seedlings are turning yellow after a few days of transfer to the nutrient medium. What could be the possible reason for this and how it can be resolved?
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Thank you! @Liane Terezinha Dorneles.
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I am searching for a method that allows to estimate the effect of exposure to PAR on establishment and growth of tree seedlings below a forest canopy, in a context where completely overcast conditions are hard to find.
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Hi,
I am also searching for a similar methodology. Did you received any?
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I want to conduct a shade tolerance - drought tolerance experiment for tree seedlings from seasonally dry tropical forests of northern Western Ghats
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I agree with Andrew-Pegman and Ryan William Orr. It is important to select the desired sized pot for tree crops as they are having long root systems. Based on the crop species you can select the pot size.
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I am using hydroponics to study seedling salt-tolerance of rice genotypes but my 15-days old seedlings are showing this symptom. Can anyone please guide me which nutrient deficiency or disease it can be? The symptom is showing in majority of plants grown in both control and stress...
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According to your problem necessarely should be nutrients deficiency, maybe nitrogen the most important, phophorous and potassium.
You can use more quantity of these chenicals and obtain a very green, vigorous and healthy plants.
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Has anyone else dealt with static electricity on Arabidopsis plates? The static causes the seedlings to root upwards. Passing your finger along the top of the plate causes the upward root to follow your finger and move. Sometimes the entire seedling will lift off of the media and stick to the lid of the plate. Since the seedling is not rooting properly, it makes drug selection difficult.
Media: 1/2MS + 0.6% agar + BASTA
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The best way to deal with static charge is increasing humidity. So if you're not afraid of contamination, you should put a humidifier in the culture room where you grow the Arabidopsis.
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Good day Scholars,
Studies have it that soluble sugars contents are more accumulated in the K+-deficient leaves, compared to the moderate or high K+ medium. Contrary to this, we found reduced soluble content in K+-deficient leaves (seedling stage).
What could be the possible reasons for such a contrary report?
Comments and suggestions are welcomed.
Thanks
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One often obtains results opposite from what is intuitively expected. I found birds dispersed seeds that were less viable than those left behind, for example. To ask what is the reason is teleological because there is no reason since we can never know unless the plant could speak or God told us. It is only possible to ask what or how, not why, in science experiments. So explain what you found and how you obtained your result and leave it at that :)
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Under the microscope, we can see that there are many red cells on the leaves of cotton seedlings. What kind of cells is it? What kind of function does it have?
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The subsidiary cells of the stomatal complex initially participate in anthocyanin accumulation. Anthocyanin-containing cells play a protective role against damage by infection-related reactive oxygen species and light-activated phytoalexins to the healthy tissues surrounding the infection sites.
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The permitted range of element concentrations in cowpea seeds using ICPMS can be found in the literature. However, there is no such range in the case of seedlings. Please let me know the range of concentration of major elements.
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Dear @Aswathi Raj K P Mineral contents in plant parts other than grain (seeds) are least documented in cowpea. You can check the below mentioned links that mention mineral contents in cowpea leaves:
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How many times greater will the elastic modulus of the trunks of mature urban street trees be than that of their seedlings? For example, Acacia confusa. Thank you for your generous help and suggestions.
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Philip John Wilson Thank you very much for the suggestion.
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I have always had trouble using square plates with media kept vertically. The sugar in the media leaks out in a few days even when thoroughly sealed with parafilm. due to which I am unable to study the morphology of seedlings. please suggest alternatives.
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@Matthew wheal thankyou for the answer. I can increase agar content. We did try to place the plates at 45 degrees, but the leakage persists.
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In the soil seed bank germination experiment, the plant seedlings died before being identified. How to reduce this phenomenon?
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Everything written above is true. Many factors affect the šeed germination in the soil under natural conditions. Proper experiment design, including seed species control, is important. It may be appropriate to perform your experiment in laboratory conditions with a smaller number of influencing factors.
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There is too much water in the germination tray in the greenhouse in winter, which affects the germination of seeds and the growth of seedlings. How to control the water well?
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If there is standing water and the number of trays are limited, you may put some water absorbing materials such as paper towel layers on the germination tray and remove it periodically.
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Which method will yield effective result? Is it the inoculation of the seeds or seedlings with PGPB?
I need detailed methods on how to inoculate the seeds as well as the seedlings in greenhouse and field trials.
PDFs will be appreciated. Thanks.
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I'm conducting a research on the effect of fire on mimetes fimbrifolius plant.. the challenge I have is to get a method to use to count the seedlings.. what constitutes a seedling in this regard ..
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I need recommendations for some North American native trees that produce very deep root systems ( probably more than 2 feet deep) during its seedling or young stage of life.
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We're trying to conduct a study on the effects of charcoal ash contaminated soil on the plant growth using Chinese cabbage as samples. Since we're in the middle of a pandemic, the conduction of the experiment is restricted to households and no laboratories are available. Any suggestions on what areas we should study that wouldn't require to travel to other places? Thank you.
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See this pdf
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Some farmers from Jhalawar, Rajasthan, India are facing the problem of wilting/withering of black cumin seedlings in patches (Images are attached). Soil of the region is medium black with around 8 pH.
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overwatering/cold
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I need to give salt stress treatment to Abelmoschus esculentus (okra).
The seeds are grown in soil and I am planning to subject the seedling to salt stress at two weeks old.
I am to stress before vegetative stage.
The treatment will be given using Nacl solution in concentration of 25mM, 50mM and 75mM.
Is it okay to commence the treatment on a two week old seedlings?
Will the Nacl solution be added as irrigation water or a foliar application?
How many days interval should I give for the treatment?
The treatment is expected to last for a period of two weeks.
I really need a guide and recommendation on how to go about the experiment.
Thanks in advance.
Regards,
Adedoyin
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I want to screen fenugreek germplasm for early seedling growth, particularly biomass. If biomass of seedling, during early stages like 7-21 days, is associated with seed weight or size, then I can avoid evaluating certain lines based on test weight or size of seed. Or these traits unrelated. Pulse crops may be useful reference.
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Dear all, I have a limited supply of Ginkgo biloba seeds from Japan. My purpose is to germinate the seeds and hopefully establish some G. biloba specimens in Costa Rica. What could be the best treatment to trigger germination and subsequently favor the seedling establishment and survival? I have access to these elevations for this purpose: 600, 1200, and 2300 masl. I have been told that the highlands (> 2000 masl) might be best. If you know a few tricks of the trade that you could share, that will save me a lot of time and effort, and some seeds too. The tropics could be challenging for temperate gymnosperms.
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I'm trying to isolate plant-growth promoting rhizobacteria (PGPR) that can promote growth in two conifer seedlings (Pinus ponderosa and Pseudotsuga menziesii). Like most PGPR isolation research, I'm screening bacterial colonies for their ability to produce plant hormones (indole-3-acetic acid-IAA, gibberellic acid-GA, and cytokinin-CK). Once I quantify the concentration of IAA, GA, and CK produced, how am I supposed to determine which isolate has the best potential to promote growth? I know high levels of IAA can have inhibitory effects, and too low of concentrations will have no effect. What concentrations of IAA, GA, and CK are physiologically relevant to conifer species and have been found to promote seedling growth? I can't seem to find a clear answer through literature review.
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Interesting...Following
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I am interested in identifying seedlings in the forest floor but I am currently concerned about the difficulty of the taxonomy in this life stage of plants. Is there any ID key or manual ? Is it hard or easy ? Thank you!
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In our recent work we realized that In root outer cell layers there were Fulvic acid compounds bound to heavy metals. It’s really weird to see such a compound in root tissues of rice seedlings growing under hydroponic culture! I hope if any expert could explain this result. Everyone knows that plant systems are unable to form Fulvic acid or at least no one has yet observed or claimed this in the literature. Our XANES result showed that this compound doesn’t carry any carboxylic group and is very much similar to FA structure. It would be appreciated if anyone of you could explain this finding.
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Okra seedlings were raised.
Pathogen inoculation was done during sowing.
This was followed by biological control.
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Dickson quality index (DQI) = total dry mass / (Shoot:Root ratio + SQ)
Where, Sturdiness quotient (sq) = plant height / root collar diameter
How effective is it to calculate DQI when pathogen inoculation was done while seed-sowing, followed by biological control (Trichoderma/ Pseudomonas/ Botanicals application)?
Thanks!
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The formula for the Seedling vigour index is given as:
Seedling vigour index I = Germination (%) × mean seedling length
Seedling vigour index II = Germination (%) × mean seedling dry mass
In the paper quoted below, The seedling length was taken on the 7th day.
Referred paper:
Kumar, B., Verma, S. K., Ram, G., & Singh, H. P. (2012). Temperature relations for seed germination potential and seedling vigor in Palmarosa (Cymbopogon martinii). Journal of Crop Improvement, 26(6), 791-801.
But, we, in our research did the thinning out on the 7th day and raised only one model plant per replication (of particular treatment) for the next 9 days i.e. 16 DAS. We did destructive sampling of the model plants on the 16th day. So we don't have the length and weight data of the sample plants on 7th day but only on the 16th day.
Shall we proceed to calculate the Seedling vigour index of thinned out seedlings only (on day 7th)? Or combine both data directly (of 7th and 16th day)?
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Generally, 5-10 days depending on the culture media/condition.
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Hello.
I'm working with germination of various species of a genus, while analizyng the data I have found a correlation:
The bigger the seed of a species, the range of time the seeds germinate is wider.
The smaller the seed of a species, the range of time the seeds germinate is shorter.
Trying to explain this, i have a tought... This could be 'cause a bigger seed have more chances to resist dormancy and so, so they can have the "option" to germinate in diferent times, so the seedlings don;t compete between each other.
Does this make sense? Any one have a peper or some reference that back up this tought?
I'll love to hear your toughts and your help with the literature.
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Seed size and sometimes seed color can have a great variation in seed germination.
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I have had some success germinating Ginkgo seeds in Costa Rica. I would like to know recommendations to secure seedling establishment. Right now they are in 1.5 L plastic bags on organic soil at field capacity. Do they need a fertilization supplement? What could be the best tips to share to secure seedling growth and establishment? How long could they take to reach a size amenable for transplantation into the field?
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Dear Sanjoy and Andrew, thank you for your observations. Sincerely, GA.
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We generally use 50 X 50 m or 100 X 100 m quadrats to calculate the basic ecological parameters within a hectare of land. Within 50 X 50 m or 100 X 100 m quadrats, we used to laid 10 X 10 m quadrats for sampling tree species, 5 X 5 m for shrubs & seedlings, and 1x 1 m for herbs.
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Quadrat size could vary according to study priorities. If keeping the size of the quadrat aside for a while, the answer to this question is multifaceted as the quadrat method is used frequently for several ecological studies (assessment of populations, communities, species diversity and biomass estimation etc.) and the number of plots may vary accordingly.
For ecosystem studies (E.g. species diversity studies), it depends on the saturation level of species-accumulation curves. If the species accumulation curve of the sampling dataset shows exponential growth, it means you need to continue sampling in a given area until the point where the curve reaches its saturation (flat) level. Indeed, pre-defined standard sampling protocols play a crucial role in the saturation of species-accumulation curves and the number of quadrats to be studied.
I hope it is helpful to some extent.
Cheers
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I think to improve the growth of pomegranate seedlings when they planted in the orchard soil because some of seedlings may be died or growth weakly. The rooting stimulants were applied to get out more roots of cuttings, therefore I hope the ability of these stimulants benefit the transplants when were planting.
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Yes, biostimulants can promote rooting, and hence the overall growth of transplants in the field. Mycorrhiza, PGPRs, humic acid, polypeptides+amino acids, seaweed extracts, etc. can be useful plant biostimulants.
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I have few young mango seedlings that I had moved to the ground way too early. My soil is calcareous and very alkaline. I have been trying several combinations of fertilizers but I apparently made things worse.
This time I'm interested in finding out the deficiencies that cause new buds to cease growing and freeze. Giving a balanced fertilizer (18-18-18 with chelated micros didn't help).
Looking at the nutrients responsible for cell generation/elongation made me focus on Boron/Calcium/P maybe/Zn?
Could it be that some seedlings just won't respond well in very alkaline soils?
The soil as the test shows is mostly calcium but I would take that with a grain of salt, as multiple fertilizer applications/irrigations and the layers of vegetable compost must have changed a lot since then.
Can you think of anything else please? More precisely the nutrients that are crucial for cell generation and elongation. Also the ones that are more likely to suffer when overfeeding NPK.
I find this one very tricky as it seems to be an extra silent deficiency where symptoms are hardly visible.
Let me know your thoughts please. Thanks
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Thanks Kouadri Mohamed El Amine I have. Seaweed extract/FA/HA/Amino acids.
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Here is my soil test. As you can see Calcium is an issue and pH is quite high.
Let's not focus on micronutrients for now please. I'm trying to help very young mango seedlings get established, and I'm worried about P fixation.
What would you pick as an NPK of choice. Suppose we start from a balanced ratio like 18-18-18 for example, would you rather prefer more N, more P or more K or any other combinations of those?
Again, the goal is to help very young seedlings get established, they're actually up to 1 year old from planting the seed.
Thanks
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In high calcareous soil for 1 year mango tree better to fertilize with FYM and Vermicompost for initial dose
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Hello,
Does anyone have any advice on how to measure soil moisture or hydraulic conductivity in a microbial greenhouse experiment? Seedlings will be grown in D40 cones and half of the sample will be given a drought treatment using drip emitters.
What is the most efficient and reliable way to measure soil moisture or hydraulic conductance in dry soil in a greenhouse setting?
Thanks.
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Soil moisture metres could help.. Measurements can be done at prescribed intervals
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Dear Researchers!
The attached images are stably expressing GFP fused target proteins in Brassica rapa young seedlings (Note: leaves were treated with Clearsee solution prior to imaging, to remove autofluorescence). I have three questions to ask.
1. In figure A, what are those strong signalled round shapes (different in numbers) found inside the cells?
2. In figure B, Is it ok to have GFP signals in stomata pores or those are artefacts?
3. In figure C, what are those fluorescence holes on the cell surface?
Can anyone help me in this regard?
Thanks in advance!
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Is it living of fixing material? For the organelles location higher magnification (not digital zoom) are required. Please, provide details of the filtres and negative- positive control.
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Hi. I'm growing Arabidopsis thaliana on ágar medium (0.8%), aiming to extract some enzymes of the seedlings 120 hours after germination (just 5 days). Do I need to prepare the MS medium? Or can I just grow the seeds in the agar medium without the MS medium?
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I appreciate your attention Matthew and Krzysztof, I'll test.
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Dear colleagues,
300 accessions of Dolichos lablab have been screened for drought tolerance in the green-house based on Augmented block design.
In this screening project, two consecutive experiments were conducted to involve 10 weeks each. In each experiment, the project involved drought inducing period by withholding water as well as water supplying period to induce plant recovery.
Both quantitative and qualitative data were collected during germination and seedling stage of the plants. The data included chlorophyll content, height of the plants, number of leaves, wilting%, overall wilting scales, recovery%, shifting and folding of leaves etc.
I would like therefore to request for your advice on the best approach on data analysis so that I can determine the best drought tolerant genotypes.
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When transplanting tropical seedlings, it's very common for the taproot to get damaged. I was wondering if there is any information on the effect of the taproot on the resistance of seedlings, and whether the plant would be able to regrow a replacement root that goes deep in the soil. Thanks
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Hi Dr Ben Aymen . I hope the following link could help: https://www.thespruce.com/what-is-a-taproot-4125537
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Hi! It’s been weeks since I try to figure out how to manage missing value in SPSS and R. what I have read is that there are types of missing value and few approaches to manage the missing value. But I was unable to find the right answers.
My experiment is, there are two factors which are spacing (plot) and fertilizer (subplot) treatment for Terminalia seedlings. The experiment has three replications, each subplot has nine seedlings. The experimental design is RCBD. Unfortunately, there are some seedlings that are died in the experiment.
So, my questions are the dead seedlings is count as missing value? Do I have to exclude the dead seedlings data from the dataset for further analysis such as normality test, ANOVA, Post Hoc and Regression?
I have read that in SPSS there are options for missing values but I just wondering is that the correct method to manage the dead seedlings data. Are there any references to manage data of dead seedlings in the experiment? I try to find it but had no luck.
Please help me.
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Muhammad Ishfaq was right in the sense that you have replications. At the end of the day, you need averages to estimate your experimental error, treatment effects and to also suggest if there are significant differences among the treatments.
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Dear colleagues, fellow scientists and students,
I am working on establishing of protocol for BioID in plants. I am aware of already existing protocols such as cell culture, the transient transformation of tobaccos and root culture. For our purposes, we will need to work with seedlings and I was wondering if someone ever tried to perhaps transfer the seedling onto solid MS media enhanced with biotin. Could that work? What would be a good concentration to start with? I'd be grateful for any insights or links to relevant literature backing up the yes-no argument.
Thank you and all the best in your research!
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Tomás María Tessi Thank you for your input!
That is exactly what we wanted to do initially however we need to do a treatment to plants that should be 24-48h and I do not think the plants will survive it. Or they would be so stressed that the whole experiment will be biased.
So I am thinking about alternative methods. But perhaps I can do the treatment and transfer them to the liquid MS+biotin as biotinylation itself is 2-6h.
Thank you and good luck in your research too, maybe I just needed to look at it from different angle :)
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We have sufficient seeds of 120 rice genotypes. We want to evaluate the genetic parameters related to early seedling vigour through replicated trials of these 120 genotypes. We didn't want to use Augmented design. Can anyone suggest us the appropriate experimental design for the same? I shall be highly grateful.
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This depends upon seed available with you. If you do not want to go for augmented then conventional will work.
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Most of the farmers are broadcasting Urea at the time of puddling. Is this is the best time to apply urea just before transplantion? Actually, urea is not persists for longer time, roots are also not well developed in this stage, and seedlings are not also properly established in the soil to uptake nitrogen from urea. So, could please suggest me which is the best time to apply urea, at puddling time or after 1 week of transplantation ???
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Yes
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The Arabidopsis wild type plants transformed with the transporter gene construct (gene + PBI121) has given me the T0 seeds. The T0 seedlings selected with kanamycin (50 mg/L) when placed in soil, grow up to the silique stage after which the plants are getting wilted and eventually die. Anyone could help me with this?
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Dear @Suhas Karle Whether all your T1 plants got wilted at siliquae stage? If so, then there is a greater possibility of management and diseases issues. Even to rule out all these possibilities, you should have grown the parental type as the check!
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I am working on the micropropagation of Tea, I need to speed up the growth of my seedlings in a short period of time. I need to know which kind of hormones I should apply in my growth medium. I was very thankful you are considering my problem.
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Giberlin, Auxin and ......
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I am performing research on tomato seedling for which I need to measure the seedling height ( root length + shoot length ) and diameter. Is there any procedure we should follow to measure the root length of seedling and also from which point should we measure the seedling diameter?
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For measuring height, use a calibrated measuring scale. For measuring diameter you can make a cross section and measure the diameter under a microscope.
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We use the standard method with TRI Reagent and chloroform. The ratio of RNA from leaves is about 1.6-1.7, but from roots and hypocotyl it is only 0.8-0.9. Do you know any efficient system for purifying the isolate from undesirable compounds?
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Use CTAB-lithium chloride method as it is robust.
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I am trying to interpret foliar analyses of sugar maple tree and seedlings using Diagnosis and Recommendation Integrated System (DRIS) approach. To do this you compare observed:optimal ratios of foliar nutrients. I am looking for literature on optimal ratios for sugar maples.
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I got an article using DRIS - Wood ash application in sugar maple stands rapidly improves nutritional status and growth at various developmental stages. It's in my profile.
You can also look for Masson et al, 2019, Variation in soil and foliar nutrition status along a forest edge–interior gradient in sugar maple forest fragments. Canadian Journal of Forest Research.
Roch Ouimet did a bunch or work with DRIS.
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I isolated the pathogen from okra seedling infected by damping off and observed macro conidia under microscope but could not know the species.
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Mª Angeles Zorrilla Lopez-Perea
f. sp. is abbreviation of forma specialis.
Thanks!
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Hi I am trying to establish a germination assay for Arabidopsis. I grew Arabidopsis seedling in MS medium and medium with Gibberellic acid (GA) as a positive control
However I didn't see any difference. What do you think I could change?
Medium: Murashige and skoog (4.4 g/l ) Sacarose (10 g/l) Agar (8 g/l)
GA Concentrations: 1 µM and 100µ M
I prepared a stock solution of 10 mM in water and I added to adjust the pH (NaOH 50%)
I sterilized the seedling and placed them in the medium immediately. I checked them after 72 h
Thank you :)
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GA is not a control; it is a treatment. You need to set up different concentrations of GA :)
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We have to study the root anatomy of almost 480 plants, 80 plants after every 2 months for 1 year. Kindly suggest whether should we plant the seedlings in pot in greenhouse or in experimental plots in natural conditions? Which will give us better results.
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The plants in greenhouse and in pots can only remain around 4 months, afterwards as mentioned there is deterioration in the roots and the substrate degrades. However, it depends on the objective pursued, because in these conditions the plants will be better cared for than in the field. Likewise, both methods can be combined and are valid. In the field, its root system will develop better and consequently the aerial part, but they will be subject to climatic and herbivore threats
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I am planning to induce the different osmotic stress using PEG-6000 and plants will be grown in hydroponics till 14-15 days to study the root's parameter.
But while inducing the stress using PEG-6000, do I need to germinate the seeds first and then transfer to the hydroponics ? or Can I directly germinate the seeds under stress from the very beginning (i.e. putting the sterilized seeds on the media)?
I wish to mimic the field conditions for the study since I will use the selected genotypes for field experiments.
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Do both, then you can separate out the effect on germination and growth
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I'm doing MDA (malondialdehyde) experiment with Arabidopsis seedlings under different salinity stress and the reaction turns yellow, the absorbances are within the range, but I still have the doubt of the veracity of my data. Is it normal to take this color and not pink or red on plants?
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Carlos Frey, The yellow color most likely is due to sugar interference. I got the same issue also with tomato samples. I adjusted the protocol, and the reaction turns to pink color. If you wish, I can send you the protocol.
Best
Maria
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In the early non-bearing years, if we measure the average leaf area (not the LAI!), can we screen the the seedling population for fruit size?
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Probably, you can develop a coefficient and with that, can be calculated.
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This layer normally maintained 1.5-2.5 cm thick. If it become less than 1.5 cm and around 1.0 cm, whats is happen?
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Hi there,
I have an experiment in which the root-tip angles of 6 lines of Arabidopsis seedlings have been measured every 2h from 0-14h.
How do I compare the change in root angle along the time course of the experiment between groups so that I can see which specific lines have a significant difference in root angle and at what time this occurs.
I have tried a repeated-measures two-way ANOVA using SPSS but cannot work out how to see which specific lines differ from one another at each timepoint - any help would be much appreciated!
Many thanks.
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There is a complication to the repeated measures aspect (that I only have a passing knowledge of), that standard tests don't account for. Because the roots' current position (angle) reflects previous growth, the time course of root angles is not strictly independent.
As an extreme example, a root tip that currently points horizontally is much less likely to grow upwards than downwards. The angle at the subsequent time point is not independent of the last point.
I'm not sure what the statistical method is to deal with time-dependency is, but I'm sure you can find a statistician who can suggest a way of dealing with it.
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I have conducted a repeated-measures ANOVA and a Tukey post hoc test. The data I have is for 3 seedling mutant lines, I am comparing their root growth over a timecourse of 19 hours. Within each group, there are 35 seedlings measured at each time point. The Tukey test gives an indication of significance between the seedling lines, however does not show at what time this significance occurs, therefore I have been trying to find this out using a one-way ANOVA at each time point, which doesn't make sense as each seedling is repeatedly measured.
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make interaction between "3 seedling mutant lines" with time (including time levels, for example 1, 2, 3, ... etc.)
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I have been doing work on seedling stomata. the old images cannot be measured in um but can in pixel. so I need to convert the measurement to um.
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Use a piece of known length and measure it with the lens, so you can find um how many pixels
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Following an experiment where Zea mays and Cucurbita pepo seeds were planted individually and together, results showed a positive allelopathic effect on germination and seeling lenght as both seeds had 100% germination when planted together as against 92 and 96% when planted individually. The seedling length was also positively influenced by this interaction.
My question now is:
Why do the allelopathic produce this positive effect?
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Thank you all, I'm grateful for your contributions, it helped broaden my knowledge.
I actually found the under listed and felt it really answered my question of Why do the allelopathic produce this positive effect?
In the experiment, the following are possible:
1. Their exudates may act as an antifungal that controls attack on seeds.
2. The exudates may act as seed priming agents.
3. Positivity in seedlings length be may be a result of early germination advantages or early competition.
4. Their exudates may also be a source of plant nutrients for the seedlings.
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Abdul-Baki and Anderson (1973) (SVI-I= Seedling length X Germination and SVI-II= Seedling Dry Wt. X Germination) formula is most used in studies.
My question is that seedling length at which day is to be considered, can i take the SVI for 30 and 60 DAS.
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Could you please send me this reference (Abdul-Baki and Anderson (1973)) ? I'm trying to understand certain details about seedling vigor indexes, too.
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someone postulated wheat landraces for possessing the Sr-gene Sr24 at seedling stage. what would have been the field response if there was no Pgt race in the field?
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Dear Drs. Okolo & Dr. Mohamed,
Thanks for your response to my queries!
One of our collaborator postulated Sr24 gene in seedling evaluations for some landraces, however, those lines were susceptible in the field evaluations due to the presence of Pgt virulent race (TTKTT) in the Pgt population.
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What could be the best age for transplanted rice seedlings to inoculate with Blast? Seedlings were ten days older during transplanting, and plants are in Greenhouse.
In the literature, I found 12/22/48 days after transplanting. Any recent experience?
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Muhammad Shahedul Alam 3 or 4 is fine; actually 4 is more logical!
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Bell pepper seedlings have been planted in cocopeat and perlite beds, but the lower leaves have begun to necrosis. What could be the cause?
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It may be nutrient deficiency/ pH.
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The aquatic oligochaete worm, Branchiura sowerbyi Beddard, feeds on decomposing organic matter in the sediment in freshwater. This aquatic worm is not a pest and reported as a beneficial organism in rice fields. However during recent years in the northern region of Iran, some farms with a high density population of this aquatic worm have problems. In these farms after a while, the overall field gets thinned and farmers have to do re-transplanting. It seems that the high density population of this worm in the field has negative effects on young seedlings roots. These seedlings are going to die after a while and cause thinning in the field. Are these negative effects really caused by B. sowerbyi? Are there rice fields in other areas with the same problem? What would be a non-chemical solution to reduce these negative effects in these farms? We are searching for other possible reasons and a solution and we would be grateful for any type of helpful advice.
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Thank you so much for the paper. I read it and it was so helpful.
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I am trying to examine how fire is interacting with woody plants having height less than 30 cm and root collar diameter less than 3.2 cm. I have two categories of saplings 1) seedlings and 2) juveniles of clonal root-sprouters and root-crown resprouters. As part of this I would like to see the impact of fire on seedlings and clonal resprouters separately. My question is, if sapling's root collar (RC) is visible it is not difficult to differentiate them but what if they RC is not visible?
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Use number of leaves
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We have sown seeds of wild rice Oryza nivara, O. rufipogon, O. sativa f. spontanea and aromatic landraces of cultivated rice, Oryza sativa L. sub-species indica in beds having an unpuddled soils after harvesting wheat crop in the second week of July, 2020. However, the seedlings after germination turned mostly yellow and in some accessions it was white in colour. Even after application of urea and micronutrients (Hipower solution) the seedlings could not recover.
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It may be nutrient deficiency and acidic soil pH.
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Clavibacter michiganensis susp. michiganensis was recovered from damaged lettuce seedlings in greenhouse and confirmed by PCR with two different methods.
I have heard about natural infection of Cmm on brassicas (Chinese cabbage), but not on Compositae plants.
Other species of Clavibacter can infect solanaceous plants (potato, eggplant, peper), legumes (alfalfa, beans), Poaceae (wheat, corn), reported on sugar beet. Several non-solanaceous plants, e.g. Datura stramonium, Chenopodium album and Amaranthus retroflexus, have been identified as reservoirs for epi-phytic survival and spread (Chang RJ, Ries SM & Pataky JK (1992) Local sources of Clavibactermichiganensis subsp. michiganensis in the development of bacterialcanker on tomatoes. Phytopathology 82, 553–560).
Is there any reports about Cmm as lettuce pathogen?
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So lets say you have a new report.
It would be good to isolate the pathogen. Confirm Koch's postulates
As for the proper identification the use of physiological multiple tests and PCR analysis would be wonderful.
The seed sources might be analyzed for seedborne presence and prevalance.
This can be done on diagnostic media after surface disinfection to find the internally seedborne presence.
Finally a look at the ability to treat to eliminate the internally seedborne presence might be recommended.
Doing this I believe you would be able to have an excellent research contribution.
As Alex says bacteria diseases of this type seem to be becoming more damaging lately.