Science topic

Prefrontal Cortex - Science topic

The rostral part of the frontal lobe, bounded by the inferior precentral fissure in humans, which receives projection fibers from the mediodorsal nucleus of the thalamus. The prefrontal cortex receives afferent fibers from numerous structures of the diencephalon, mesencephalon, and limbic system as well as cortical afferents of visual, auditory, and somatic origin.
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For researchers who have conducted transcriptomics using the adult rat prefrontal cortex, is it necessary to optimize the RNA extraction method? Additionally, what is the average weight of the rat prefrontal cortex, and how much RNA can typically be extracted from it?
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The average brain weight of a rat is 1.5-2 g, depending on the body weight and the age.
TRIZOL is a good option for RNA isolation; typical yields from brain tissue (mg RNA/mg tissue) are 1‑1.5 mg.
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Dear all, I am trying to do a synaptosomes preparation from Postmortem Human Prefrontal Cortex (frontal). I read few articles, they used 1 to 5 gram at the beginning. I started with low amount of frozen brain, around 300 mg (PMI < 4 hours). From 300 mg weight of prefrontal cortex, I generally obtain ~25 micrograms of total protein from isolated synaptosomes. 
Is anyone have any idea to increase the yield at the end (beside increasing the weight of the brain)? I do not have a high amount (weight) of human brain.
Each minced prep is immediately homogenized by applying 20 slow stokes using a teflon-glas tissue grinder (grinding chamber clearance is 0.15 mm). Then I use layering of discontinuous sucrose gradient.
I am thinking to use a glas-glas tissue grinder (grinding chamber clearance is 0.025 - 0.076 mm).
I welcome any idea.
Cheers,
Stella
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@citlali... It wasn't possible.
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In a recent study published in the journal "Brain Stimulation," researchers found that transcranial direct current stimulation (TDCS) applied to the prefrontal cortex of the brain can help reduce symptoms of depression in people with mild to moderate depression. In the study, participants received TDCS for two weeks, five days a week, for 20 minutes each session. Results showed that participants who received TDCS had greater reductions in depression symptoms than participants who received a placebo.
However, other studies have shown that the effectiveness of TDCS for treating depression is limited. In a recent study published in the journal "The Lancet Psychiatry," researchers found that TDCS applied to the prefrontal cortex did not produce any difference in depression symptoms between participants who received TDCS and participants who received a placebo.
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TDCS presents both potential and limitations in treating depression. The discrepancy between the studies you cited underscores the complexity of depression treatment and the need for further research. This means that TDCS as treatment necessitates more comprehensive studies to fully understand its efficacy and role in the context of complex psychological and health factors.
The relationship between depressive symptoms, sense of self, and overall health seems to be important in this sense ( ), putatively highlighting the multifaceted nature of depression. This type of research, including the sense of self in a bigger picture, contributes to our understanding of depression's broader impacts and may inform future therapeutic approaches, potentially including TDCS.
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My experimental design requires the isolation of the medial prefrontal cortex and amygdala from the mouse brain, but these brain regions are difficult to distinguish with the naked eye, even with the help of the atlas. How do you complete similar experiments?
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You can use this type of matrix to dissecate the amigdala. Is quite precise. You just need to see exactly the area to cut and keep.
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Below are a few early questions I am curious about understanding in the field of neurofeedback and brain activity.
1. So how *do* you actually create a control for neurofeedback?
2. Why is it easier for brain states to enter hallucinatory ones rather than high intelligence ones? May neurofeedback facilitate entering "high intelligence" ones, as in those, correlated with latent g?
3. How do you detect if someone's emotion is feigned or reptilian--what is the difference in neural signature, and can it be detected in neurofeedback and even trained to be selectively feigned or reptilian depending on the stimuli? A good example would be to create emotional distance, in other words, have a brain state correlated with feigning an emotion, about one's trauma, once they have processed it over and over again.  An example where it may apply in the opposite is to learn empathy and collaborative skills with other people. I've heard of the Duchenne vs Pyramidal smile but I'm curious if there are other ways of differentiating emotions, especially non-outwardly expressed ones.
4. What were the seminal papers leading to the fitting of the PING (pyramidal interneuron network gamma synchrony) model to the neural circuitry in the DLPFC? Is anyone aware of this model and how to train the relevant brain regions exhibiting this pattern, namely like in the DLPFC, to have higher power during working memory tasks?
5. Is the fact that individuals with ADHD exhibit gamma-band responses during stimulus encoding, that are uncorrelated with task performance, compared to controls, correlated to autistic traits?
6. What is the “auditory oddball task” and why is it important for comparing gamma oscillation differences in SZ and control patients?
7. What is the action of the medial prefrontal cortex vs dorsolateral prefrontal cortex and are the deficits more easily reversible in one region vs another? Which is more strongly implicated in SZ? Which in OCD?
8. What is the significance of 40 Hz activity in the human brain and why is activity in this band during working memory tasks correlated to increased performance?
9. Why are SZ brains showing high gamma band oscillations for “simple tasks” compared to controls?
10. Why is there late theta response in SZ compared to controls in tasks involving significant WM and rule-switching tasks?
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Thank you for the detailed response! I will process
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I have seen this black spot so many times while isolating the brain of B6 mice, but I still don't know exactly what it is or which specific region it is. It seems to be B6 specific or at least, it is absent from SJL brains.  
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Those are melanocytes in meninges. See the article below.
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Dear colleagues- we routinely record local field potentials in freely moving mice from hippocampal CA1 and prefrontal cortex with ~ 125um depth electrodes, but would like to record multi neuronal single unit activity (and LFP's) in lightly restrained or freely moving animals. We would like to use silicon based shank electrodes with 16 to 32 recording sites, with one and sometimes two shanks- we have Intan recording systems. We have found some possible commercial solutions, but they are quite expensive and seem to be single use only. I was wondering if anyone had come across some more "reasonably priced" silicon or similar arrays? I am aware of tetrode methods and the more advanced CMOS based electrodes, but think the silicon array would be best suited to our current studies.
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These articles may provide you some useful information
1. Ahmadvand, Tala, Sara Mirsadeghi, Faezeh Shanehsazzadeh, Sahar Kiani, and Mehdi Fardmanesh. 2020. "A Novel Low-Cost Method for Fabrication of 2D Multi-Electrode Array (MEA) to Evaluate Functionality of Neuronal Cells" Proceedings 60, no. 1: 51. https://doi.org/10.3390/IECB2020-07087
2. Pelkonen, Anssi, Cristiana Pistono, Pamela Klecki, Mireia Gómez-Budia, Antonios Dougalis, Henna Konttinen, Iveta Stanová et al. "Functional Characterization of Human Pluripotent Stem Cell-Derived Models of the Brain with Microelectrode Arrays." Cells 11, no. 1 (2022): 106.
3.Pérez-Prieto, Norberto, and Manuel Delgado-Restituto. "Recording strategies for high channel count, densely spaced microelectrode arrays." Frontiers in Neuroscience (2021): 869.
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We have found some evidence for behavioral habituation to repeated muscimol microinjections into the orbitofrontal cortex during an aversive operant procedural task. The effect seems to wear off after 2-3 injections (given every other day).
Has anyone seen this? Any potential explanations?
Thank you!
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There is no habituation to the effect of muscimol itself. It will always decrease neuronal activity. However it is possible to adapt behaviorally to the area of decreased neuronal activity.
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Currently we are working on a review that surveys the cognitive/neural mechanisms of tactile working memory. We propose a sensory recruitment model, which suggests that prefrontal regions interact with somatosensory cortex to encode, maintain and retrieve tactile working memory. Please leave your email address if of interests.
Thanks,
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I am interested in neuro leadership studies
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Hello,
My friend is preparing for a systmatic review in the neural basis of instruction-based learning. Instruction-based learning (IBL) refers to learning to perform tasks based on instruction rapidy. You will be responsible for part of the writting and editing (specifically the role of ACC and IFS). Leave your email address if you are interested.
Best
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We are interested in studying brain development /the effects of learning new skills in children. Please send more info.
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I don't believe there's much research in this area in humans. There are mice and primate studies
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For equipment testing purposes my research group wants to acquire an fMRI data set with frontal cortex activation, as anterior as possible.
What would be the most reliable (yet simple) task to achieve this in a single participant? Basically, I'm looking for the prefrontal equivalent of a rotating checkerboard.
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I am looking for a skilled personnel in Kuwait University that is familiar with antioxidant studies using ELISA kit or other techniques on rat's brain homogenate, particularly the hippocampal and anterior cortex regions.
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Hi Ahmed. I used to work with antioxidant assays on brain homogenates but not with commercial kits. The assays that I used are affordable and pretty much reproducible.
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Hi All,
I need to specify a few Regions of Interest (ROI) in the human brain providing their coordinates (x,y,z). What I am interested in at this point are anterior cingulate cortex, dorsolateral prefrontal cortex, posterior parietal (in or near the intraparietal sulcus) motor cortex, bilateral primary motor, cerebellar cortex, cerebellar dentate, left putamen, left thalamus, premotor cortex, ventral lateral nucleus, striatum, precentral gyri, postcentral gyri, primary sensorimotor cortex and some other.
Is there a publication (preferably one and online?) I can check these cooridnates in?
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Enrico Marani - does it have an online version?
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Hello everyone,
I wanted to label up serotonin fibers within CPF and AMG as target regions of raphe nucleus. I started an immunohistochemistry using anti-5-HT antibody, and I got a good staining of cell bodies in raphe nucleus, however, I was unable to detect the projections within the regions of interest.
For more information, I used:
* coronal sections of mice brain with a thickness of 40µm
* anti 5-HT antibody: 1:5000
* the activity was visualized with DAB
Please, let me know if you need further info.
Thank you in advance
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Thank you Fatimah
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Hello everyone, I wanted to ask you if you know any good paper that dig into the connection between medial Prefrontal Cortex and the Dorsal Hippocampus. Also if you knew some paper related to shizofrenia would be great.
Thank you :-)
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Hello everyone! I need to label mouse PV inhibitory neurons in the medial prefrontal cortex at an early post-natal time point (P7). However, I am experiencing some problems finding a good antibody to achieve this purpose, since these neurons still do not express PV at this time point (they only start expressing around P14) and I require a strong and, preferably, a nuclear labeling. Can you point me to good antibody for immunohistochemistry in frozen slices?
Thank you in advance for your help.
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try ab11427, rabbit polyclonal, for example see my older paper (tissue was fixed with PFA, not methanol). Very strong crisp staining. Good luck
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Hello;
In terms of learning and memory, do you think that proinflammatory cytokines such as TNF-alpha, IL-1beta, and IL-6 may act differently in the prefrontal cortex and hippocampus?
I've some data that shows TNF-alpha and IL-1beta are reduced in the prefrontal cortex but increased in the hippocampus in the animals with impaired learning and memory scores in Morris Water Maze and Novel Object Recognition tests. In my opinion, it may possible that the neurotoxin that I used may reduce live cells and cause to detect a lower amount of proinflammatory cytokines. However, since the level of them are higher in the hippocampus (as expected) I can not make any connection with that difference between prefrontal cortex and hippocampus.
Of course, there are some papers reporting the diverse role of those cytokines in different conditions, however, I could not find the proper and clear answer for my case.
Thank you for your help.
Kind Regards.
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Hello,
In may be due to the glial difference between the two regions. The ratio neuron/glial cell is lower in hippocampus than in prefrontal cortex.
Inflammatory reaction may also be different between region depending on neurotoxin injection mode. However, if there are papers on the opposite role of these cytokines in brain regions I am also interested!
Best Regards
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how can I download a free version of the book with this title:
Paxinus and franklin's the mouse brain in stereotaxic coordination
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Has someone heard about unexpected effects of sham when using tDCS? We are observing what seems to be a systematic inhibitory effect of 2 mA (30 sec ramp up + 30 sec ramp down) cathodal sham stimulation. We are stimulating the right ventrolateral prefrontal cortex. I did not believe this putative effect at the very begining of the experiment, but after running a lot of participants with an experimental task I know very very well, I am now about to claim that our sham condition is playing a role...
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Nice Dear Jovana Bjekic
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I'm interested in isolating RNA from mouse hippocampus and prefrontal cortex. My lab routinely uses the Trizol method for large pieces of tissue (eg, liver and intestine), ending with dissolving the RNA pellet in 200 uL DEPC water. For hard-to-extract tissues (eg, adipose) we reduce the final step to 20-50 uL DEPC water. Is this an acceptable modification for hippocampus, or should I reduce the volume even more? We usually aim to get at least 250 ng/uL RNA for reverse transcription but I'm wondering if this is possible with such a small piece of tissue. Are there any other modifications to help with yield?
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Hello Jessica! Incubating of the supernatant after Trizol will tend to increase the yield since it may give you low purity, impure precipitation of the RNA. For the RNA work, efficient dissociation of the brain tissue is a must. I would suggest to try Lysing Matrix E https://www.mpbio.com/116914050-lysing-matrix-e-cf. You can use any kit, but I used this kit previously to get great yield especially on a single dorsal root ganglion https://www.mpbio.com/112721050-rapidpure-rna-tissue-kit, Spin Kits. Trizol is dangerous especially chloroform, so suggest to change to spin column. It will retain RNA better, your 260/280 should be close to 2.0. Another suggestion is to immediately place your brain samples in RNALater Buffer, let it sit until it sunk overnight at 4C, then take the brain sample, lyse with lysing matrix, and then spin column. You'd have great result with this methodology and avoid using harmful chemical, chloroform. Let me know should you have any questions.
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What areas of the brain can be measured using EEG? What functions are appropriate and not appropriate to study with this method? Can the EEG record accurately activity in deeper brain structures and cortical areas along the midline (MPFC, Precuneus, ACC, subcortical structures)? What are the main advantages and disadvantages of this method?
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What we know by now, it is only appropriate to use EEG for cortex in connection to, not for deeper structures. But there are some newer methods of use of EEG which can give you some answers or at least an idea about the connectivity, functional and other questions, like source reconstruction from EEG (like sLORETA, for example), the graph theory applications, and also Transfer entropy analysis, Granger causality etc. For those analyses you also need to use high-density EEG, meaning more than 64 electrode positions, the more the better.
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I am trying to do some molecular analyses from brain tissue activated with DREADDs, and I am wondering how large is the spread of a single stereotaxic injection of the AAV-DREADD. For example, if I target the infralimbic or prefrontal cortex, what kind of volume am I expected to have DREADD expression in?
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The heterogeneity of DREADD expression and region of influence in disparate brain regions with different types and densities of neurons makes it rather difficult to answer your question with certainty. This is being much tricky when we talk about PFC and cortical layers with different neurons and other cells.
Also, differences in tropism of various serotype AAVs and pseudotyped lentiviral particles would be observed as one vector being effective in one area like PFC and the other would not. I suppose that even cell-type specific DREADDs would not be a definitive resolution.
Please check the histological section of the following paper:
However, back to answering your question, it has been reported that the IHC staining of CaMKII indicated that 70% of mPFC pyramidal neurons in the proximity of the injection sites were DREADD positive:
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To assay changes in synaptic protein complement, we want to harvest microdissected CA1 and prefrontal cortex slices from young (P5-P12) mice for Western Blotting (WB) of isolated synaptic fractions. We want to quantify total and synaptic GluA1, GluA2, NR2A and NR2B receptor expression.
It seems like it would be hard to get enough CA1 tissue. If you've had success doing this, could you please add a reference citing ug yield per P5-P12 CA1 and amount needed for Westerns.
We would obviously need synaptosomes but again, unsure of the feasibility for CA1, and even we get a usable yield, will it work on immature synapses and give enough yield at particularly young ages (P5-P7)?
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Thanks Heide, much appreciated.
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I am trying to inject MW 10,000 dextran into the orbitofrontal cortex. I am using a 13 microns glass pipette. I am injecting just with a regular syringe and a tubing, which is connected to the pipette. I fixed the brain in PFA, cut on the freezing microtome and I don't see any fluorescence. What could be the problem? Old dextran, need antibodies to amplify the signal or I have to image slides in any special way? Note: I am doing this for the first time! Thank you for your answers.
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Check if this link helps you.
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Does Deep Brain Stimulation work on the Amygdala itself or on connection between amygdala and medial Prefrontal Cortex too?
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It is only theoretical, but practical it is not possible. Everything you read, must not be true!
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Hi, I'm looking for non-surgical, non-traumatic models of prefrontal lesion in rat. I'm aware of rotenone, but because of peripheral issues I can't use this substance. I thought of 6-OHDA, but I'm not sure about prefrontal damage. Any help would be appreciated. Thanks!
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Dear Ernesto! With my pleasure. There is a method for exactly answering to your question. Please open an Attachment.
All the best,
Vladimir
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Dear Colleagues,
Are cognitive control and cognitive effort the same thing?
I am confused. In the neuroscientific literature on second language learning, the neural organization of cognitive control and cognitive effort seems to overlap (e.g., the anterior cingulate, dorsolateral prefrontal cortex, inferior parietal regions). At the same time, I have come across some results that make me think that cognitive control and cognitive effort are not the same thing.
For instance, I have found fMRI studies that reported increased "cognitive effort" (and therefore more widespread fMRI activation) in less proficient speakers of a second language (e.g., Abutalebi et al. 2018). At the same time, several ERP studies have suggested more "cognitive/language control" in highly proficient second language users. For example, Fernandez et al. (2013) have shown that higher second language proficiency was associated with a greater mean N2 amplitude (greater inhibition) on an executive function test. Another example: Rossi et al (2018) concluded that individuals with high second language proficiency require more cognitive/language control for their first language, even before they speak their second language.
I will greatly appreciate your help.
With my best wishes,
Monika
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Friends,
The difficulty to form and execute plans of action is diagnostic of large prefrontal lesions. The expectancy of reward activates many neurons, especially in orbital prefrontal cortex. All four major executive functions of the lateral prefrontal cortex (planning, executive attention, working memory, and decision-making) are prospective, “look” to a more or less distant future. The prefrontal cortex is rightfully called the “organ of creativity,” as it is capable of organizing novel actions and speech (it has “memory of the future,” Ingvar 1985). It is also capable of “imagining” what’s to come, and to estimate future risks and benefits. The stock market is moved up or down by the collective prefrontal cortex of countless investors. In sum, here is a brain structure that is literally driven by the future, eminently teleological. Many seem to ignore such an obvious fact. A bit of reflection is here in order, however.
For the self-respecting scientist, teleology is anathema and intolerable absurdity, because it reverses the natural temporal order between cause and effect. That reversal in the prefrontal cortex is only apparent, however, because for that cortex, as for the rest of nature, there is “nothing entirely new under the sun.” Thus, all new planning, all new creation, all new imagination, and all new decisions are based on history and prior experience. All of them are simply re-creations of the past.
Thus the absurdity is gone. But think of how dull, how witless, how plain and how barren would be a world without the prefrontal cortex!
Cheers,
Joaquín
J.M. Fuster and S.L Bressler – Past makes future: Role of pFC in prediction. J. Cogni. Neuroscience, 27: 639-654, 2015.
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I am an absolute proponent of the role of the prefrontal cortex in goal-directed behavior. I agree that the idea of goal-directed actions is neglected. In my opinion there may be two reasons for this. First, most of researchers still use paradigms in which the idea of goal-directed behavior is not used or unimportant. It is of interest that the manifestation of such paradigms can be found in the question presented because it can be derived from the question that the prefrontal cortex is only “the organ of the future” and the rest of the brain functions in a stimulus-reaction mode. This is not a case. The whole brain is the predictive organ because the function of the brain is the satisfaction of the organism’s needs and needs are always aimed at the future. For example, animals and humans feel hungry before there is a real shortage of nutrients in the organism or in novel and unusual situations humans and animals may feel stress and anxiety even if nothing happens, etc.
The other reason is that most of the mechanistic models of how pFC constructs goal-directed actions from the past and the present are still not sufficient to explain corresponding data. The article attached, to some extent, is an example of this. The article demonstrates the prefrontal cortex is strongly involved in goal-directed actions but the authors does not suggest specific mechanisms which the prefrontal cortex would use to construct and pursue goals. Such special mechanisms are necessary if pFC is the predictive system. Cognits and the PA cycle in itself obviously are not unique characteristics of pFC
My position is that the main function of the human prefrontal cortex is the formation of learned needs, which are so strong and long-term as innate needs and then the execution of goal-directed processes associated with these needs. The prefrontal cortex constructs the goal and the means of a goal-directed process jointly on the basis of the criterion of minimal construction costs.
Prudkov, P.N. (2010). A view on human goal-directed activity and the construction of artificial intelligence. Minds and Machines, 20, 363-383.
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Hi,
I would be thankful for any piece of literature introducing short, accessible and uncomputerised psychological tests for executive functioning and visual-motor processing. I am most interested in assessment of spatial and hierarchical planning.
Thank you
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Stephen, thank you for the reply. I didn't correctly express myself and have now corrected the question. I am not interested in one test which would merge all the functions but in all the tests available which cover the mentioned (not all in one test).
I am familiar with the Tower of Hanoi and I saw that the set can be bought online for a reasonable price, but was still hoping that other planning assessment tasks would be available.
Thank you for suggesting the Porteus Maze test, I will look into it.
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Hello, we are analyzing inflammatory markers (such as TNF-alpha, IL1B, IL6 and INF-gamma) in brain samples (hippocampus and prefrontal cortex) after an intra-peritoneal injection of LPS in C57BL/6 mice.
Despite the high increments of these markers described in the literature using this method, we obtain very low increments or no changes. We suspect that maybe the fact that our animals are housed in a SPF facility could be interfering. Has anyone using SPF animals had the same problem? Could you give us some advice? 
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hi Eva,
I followed 6 LPS injections (1 mg/Kg/day), sample collection 24h after the last administration. I didnt check the cytokine markers yet.. but i checked the expression of nfkb, ikk, amyloid beta which was expressed high and also the hippocampal LTP was significant reduced. based on these, it is pretty much sure that TNF alpha and IL-6 will be higher in the brain.
could you tell me which LPS you are using?
I am using LPS from sigma
If you are still struggling with the marker expression, then i recommend you to initially check the blood serum cytokine levels.
have a nice day
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I am doing experiments with rats and want to stain brains so that I can distinguish layers of the cortex.
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Thanks for the suggestions, I have NeuN and Cresyl going and will try the Cux1 & Ctip2 option!
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In the my project miR-516b-5p is my choice for study. There is a problem in this project and it is: miR-516b-5p has low expression in peripheral blood mononuclear cells of Parkinson patients! what is the reason????
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Thanks for your answer and guidance
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It is commonly stated that the prefrontal cortex typically is not fully functional until as late as age 24. If true, this must be an average figure.
If one considers young children that, due to circumstances, are required to act responsibly and independently, far beyond their chronological age, and how they continue through their adulthood to being very responsible and independent.
On the other hand, consider the child who has a "helicopter" mom or other overindulgent caregivers, and how everything is done for them so they often do not act responsibly or independent. This lack of character building then results in an adult who continues acting like a child who is undisciplined, unethical, and irresponsible.
Of course, a middle ground is needed for child development to result in an adult who is well-balanced.
Are my impressions supported by empirical evidence or well-founded theory? Is there a neuroscientific explanation re. the plasticity of the brain?    
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To define it as spontaneous production, the selection and the execution of new auditory-motor sequences appears insufficient. On the other hand, compared to numerous brain imaging studies on musical cognition, perception and musical development, there are few of them on musical invention which are, for the most part, confined to the study of already memorised performances and very few on musical improvisation in real time. In a brilliant work, a number of years ago Limb (2008) asked ten pianists to memorise a melody and, after having them lie in the tube of a suitably modified magnetic resonance machine and connected to a keyboard, he managed to have them reproduce a melody they had just learned, make a simple scale and, finally, improvise. Limb saw that the improvisation was correlated to the activation of a nerve network that included, among other things, structures such as the inferior left frontal gyrus, the anterior cingulated cortex and the medial prefrontal cortex. The most interesting evidence was the widespread ‘turning-off’ of the prefrontal areas, which are generally correlated to the conscious control of the activities in progress and responsible for interference in the capacity to concentrate. This experience of ‘turning-off’ is not yet sensorial and not yet perceptive; it is not an experience of emptiness, but corresponds to the activation of mental images that anticipate the specific action that leads to an internal emulation of the planned motor actions, very similar to what takes place in reality. As has been shown recently by Ridderinkhof and Brass, (2015), also with reference to the sphere of football, the comparison between the effects of the anticipated action and those of the internal emulation may generate an error signal that may encourage the improvement of the motor performance, even without the execution of the real movement.
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Dear Ubirajara,
thanks for your suggestion. Unfortunately I don't know the Bob Snyder's book "Music and Memory", but I'll try it. In my opinion, our brain, more than a reactive machine (as yet it was stated for a long time), it is a predictive machine, that formulates hypotheses, provides the consequences of actions and plays in advance. The evolution of motor schemes of behaviour has given rise to an natural logic underpinning prediction and action. In his long adaptive challenge, the human brain not only tuned systems for fast action reshaping, but also molded the entire musculoskeletal architecture and redefined the internal models of the body. 
In the original form of life that is jazz, narrating means directing time: a time of epiphanies and introversions, of intuitions and revelations, of syncopated rhythms and aesthetic insights, which appear and disappear on the edges of interference between consciousness and the unconscious.
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Hi all,
I recently ran a western blot using medial prefrontal cortex samples from PN17 rats. I followed the same protocol that other students have used in our lab (we prepare samples with RIPA buffer + phosphatase and protease inhibitor), and I see this weird double band where spinophilin (green) should be. I loaded 20ug of protein, and my primary antibody concentration for spinophilin was 1:1000. The red is stained for GAPDH at 1:3000. It's weird because with the same amount of protein loaded (and same protocol), in the cerebellum and POA, we don't see the double band. But we also see this double band in the amygdala as well. 
Is this simply a regional difference and therefore I need to change the amount of protein loaded? If not, does anyone know why this might be the case. I'd also appreciate any suggestions to improving the method. 
Thank you! 
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One could be modified (phosphorylated, acetylated...) . The real question is if you had pure spinophilin and preadsorbed the antibody, do both bands disappear (or if there is a knockout available).  Like any other immunocytochemical test, if your detection is sensitive and the antibody concentrations are too high, then you will unmask cross-reactive bands.  What happens if you dilute the primary?
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What do you think about a combination of four pharmacological agents from four different classes to ameliorate the negative/cognitive/pseudonegative symptoms of a schizophrenic psychosis, particularly the following combination: olanzapine (antipsychotic/neuroleptic), valproate (anticonvulsant/mood stabilizer), fluoxetine (SSRI) and modafinil (psychostimulant), leading to a net increase in prefrontal dopaminergic and noradrenergic, as well as serotoninergic, histaminergic and GABAergic neurotransmissions?
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A major limitation to such combinations is the accumulation of side-effects of individual drugs which constitutes a major burden on the human physiology, and may lead to non-compliance.
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Hi everyone, 
I am performing stereotactic surgery for mPFC in CD1 mice. The coordinates that I am trying to use is AP: +1.9, ML: +/- 0.3, DV: -2.5. Apart from this antero-posterior coordinates, I have also tried +1.6, +1.7 and +1.8. But in all these cases, I see enormous blood while inserting the cannula or even the injector. I see so many papers injecting drugs, lentivirus etc in mPFC using same coordinates, but none say a word about the blood. If anyone has experience on this, please share your experience here. Thanks! 
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This is unfortunately a very common problem. There is a few things you can do. Rather than using a drill to make a hole to insert a cannula or other instrument, I simply start the hole with the drill and then finish it with a 27g needle. I find that making the hole manually is more delicate and it gives you greater control over adjusting before you end up with a massive bleed. Depending on what you are doing, another tactic that people also use is targeting at an angle to avoid the problem completely. I have seen this done in papers, but have not tried it personally. I think this would be difficult with an infusion needle unless it was very stiff, and you'd have to practice adjusting your equipment to be able to insert at an angle. 
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From a neurobiological perspective, creativity is generated by a huge and intricate variety of cortical and subcortical activity, concentrated primarily in the ventral striatum and in the prefrontal cortex. If the basal ganglia produce continuous novelty, the prefrontal cortex transforms the latest news in creative behaviors explicit. In this workspace, countless expressions of harmony and disharmony neural accompany the emergence of phenomena of thought and behavior original. A multitude of intra-cognitive process scattered competing for access to a conscious workspace for filtering, communicate and exchange information.
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Yes, I think it is interesting to add that from an evolutionistic perspective, the central nervous system has selected two neural mechanisms, emotional and cognitive, which process distinct types of information. Once they reach the thalamus, these passages trigger different sequences: an initial one, with emotional significance, is elaborated in the amygdala; the following, with an affective significance, is elaborated in the gyrus cingulate of the limbic cortex and in the ventromedial prefrontal cortex. The cognitive organization, by contrast, contains other limbic structures, largely the hippocampus and the parietal, occipital and temporal lobes of the cortex. Among scholars there is widely agreement on the fact that this system is responsible for long term memory. The functionality of this system depends on the simultaneity of both types of elaboration on the dorsolateral prefrontal cortex. This region takes part in the control of executive functions as well as integrating the information which allows for cognitive superior functions. Furthermore, this brain zone planning strategies for appropriate behavior and execution through the motor cortex and is responsible of the temporal processes, working memory and vigilance that makes possible all higher mental functions.
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In order to perform a fMRI ROI analysis we need some prefrontal cortex region masks. Particularly, we are interested in the vmPFC, dmPFC, dLPFC and vlPFC. It seems that are a lot of different definitions for the same region. So, does anyone know how we can get it from the commonly used atlas (Harvard-Oxford or AAL), combining different labels? Or if anyone has already some of these masks, could it be possible to send to us?
Thanks very much in advance,
Fernanda
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Hi, maybe you can also try our atlas, you can get it in the following link: http://atlas.brainnetome.org
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The motor cortex is in the frontal lobe; the prefrontal cortex controls the main executive functions (executive attention, working memory, decision-making, inhibitory control); patients with substantial frontal lesions lack the will and capacity to formulate and carry out plans of action; certain actions are preceded by electrical signals in frontal cortex, even before the conscious experience of the intention to move.  All of this seems to justify calling the cortex of the frontal lobe, as a whole, “the executive of the brain” (I believe Pribram was the first to use the term).   I know, it is a metaphor, but has interesting connotations with regard to free will and the generation of willed action.  Further, it keeps misguided dualism at bay.
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Dear Joaquin,
I disagree as this concept suggests that decisions are made in the frontal lobe, and the rest of the brain and body slavishly executes whatever command is sent from “central headquarters”. So in my view, instead of keeping dualism at bay, it introduces a new kind of dualism (or even a homunculus to the malicious reader). More embodied approaches to cognition emphasize the dynamic interaction between brain parts and the body in the creation of behavior. I have written a paper on the origins of behavior with Aaron Schurger (attached). Also, I’ve written a paper with Dan Burnston and Pim Haselager (in which we build on your work on monkey physiology) that frames the role of the frontal lobe in terms of regulating autonomous sensorimotor and decision processes, rather than the initiator of behavior (also attached). Maybe your suggestion is compatible with these considerations, but at face value it suggests a more amodal, detached and disembodied framework.
Best regards,
Sebo
PS. Apologies fore the shameless promotion of my own work, but I believe these papers are relevant in this discussion.
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The rats will be subjected to chronic alcohol vs controls. The brains will be collected, RNA extracted and the levels of candidate genes will be analyzed by RT PCR.
Which areas of the brain are most promising to see the meaningful differences.
Factors to consider:
Some important areas don't contain cell nuclei. Some important areas are small and hard to locate and collect. Shall we first separate brain areas and then freeze? Or freeze, then cut and cut out frozen areas?
So the question is: among the areas related to chronic alcoholism, which ones are easy to locate and collect? 
I think cerebellum, striatum,, hippocampus and  prefrontal cortex, but my knowledge of brain areas and of alcohol research is limited. Please help!
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Hi Max!
Ron Paletsky used to kill mice  fast and freeze brain immediately in some specific liquid to avoid degradation. How he extracted specif tissue I do not know. Then I, guess, you can do cryosectioning following by dissection. After sectioning you fix in ethanol and dry you samples. This allows you to avoid RNA degradation in the process of dissection. Do you have dissecting scope? Laser capture microdissection would be the best, let me know if you will use this option, I can help.  
It would be interesting to know opinions of people who are experts in brains.
Best!
Julian Rozenberg
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I am trying to induce LTD in the prefrontal cortex of anesthetized rats (300-350g). The stimulus protocol I found suggests applying a 900 pulse train at 1Hz frequency using 70% maximal amperage. For some reason, this paradigm has produced a depressed stimulus evoked LFP in some rats, or a potentiated LFP in other rats. Any suggestions??? 
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Not only age but also  the kind of anaesthetic might interfere with plasticity. We prefer ip injection of a pentobarbital mixture instead of, for example inhalation of isoflorane (which seems to decrease synaptic responses). 
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Dear Researchers,
I have to use the nuclear, cytoplasmic and mitochondrial extract for my studies involving m-RNA and protein in brain isolated parts (striatum, substantia nigra, hippocampus, prefrontal cortex).
I have no much budget to purchase kits for the same like of Thermo scientific (http://www.thermofisher.com/order/catalog/product/78835?ICID=search-78835)
I wish to prepare chemical solutions for extracting them.
Kindly tell me the exact good and short reliable protocol to perform that involving ease and reproducible results...
Thanking you
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Thanks Rafik for the advice
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I need to implant my electrodes in the mPFC. After removing the skull and dura, there is a big vessel in the place where I have to implant my electrodes. I know if my electrodes damage the vessel, it will cause bleeding, but there is no space for me to cross the vessel.  So what I do stupidly is that I remove the vessel on purpose and wait for several minutes until it stops bleeding, then I implant my electrodes.
My question is whether someone knows if during implantation there is no bleeding, whether during the rat's recovery, the bleeding could happen again and clot and block my electrodes. Also, whether the vessel I damaged could grow back along my electrodes. 
The third question is three days after surgery I find there is yellow liquid coming from the brain. And the rat doesn't move too much. Does that mean the rat has inflammation? What should I do?
Thanks for your reply!
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Hello Béatrice,
I checked the poor rat today. Although he moved normally, but the brain problem seemed more severe. I still don't know what happened to him. I did 7 surgeries and 2 of them had this kind of problem. The other's problem was less severe, but I don't know why. I should ask the vet perhaps.
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I'd like to fluorescently stain for activation of GABAergic neurons in the mPFC- but have a few questions.
1) When looking at the mPFC, would it be best to use antibodies for FOS and GABA, or FOS and GAD67? What are the advantages or disadvantages to each? 
2) Are there any particular antibodies you would recommend for this?
3) Any tips and tricks as far as staining goes? TBS or PBS? Dilutions?
Thank you in advance!
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Hi Sara,
I would use FOS and GAD67 antibodies. GAD67 will label all the cells that are GABAergic wheres, GABA will also label the vesicles and axon terminals that contain GABA not just the cells. For antibodies I would check Journal of Comparative Neurology Antibody Database at:
The rest should be just standard double-labelling immunohistochemistry.
Best wishes, Refik
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I found three major approaches of the neurological mechanism of attention:
a)mirror neurons related with association areas and the develop of a specific task,  
b) lateral intraparietal cortex on forced decision task 
c) dorsal prefrontal cortex in taks related with working memory 
Is there another important approach? Are these systems related? Is there a better paradigm to understand attention process on a neuroscientific poinf of view?  
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Dear Roberto,
Let me offer you my humble thoughts on the subject after long study and research experience on it in human and nonhuman primates:
1. Attention is the cognitive function that makes optimum use of limited neural resources for the most efficient use of information in perception, memory, intelligence, and language.
2. It has two major components served by different but interconnected neural structures: (a) an inclusionary component that coincides with what is commonly called the "focus of attention"; and an exclusionary component that serves to inhibit or suppress what is distractive, irrelevant or inefficient.
3. Attention and its two components has very deep biological roots, because all nervous systems and their parts, at all levels of the nerve axis, have certain capabilities and limitations.
4. Thus, for example, the knee reflex is a precursor of attention, because it involves the contraction of extensor muscles and the concomitant relaxation of flexor muscles. Or, on the sensory side, take the retina.  Ganglion cells in the center of their visual receptive field are excited by light on it, whereas those in the periphery are inhibited.  In both cases, sensory and motor, the push-pull of excitation and inhibition has the effect of optimizing contrast and efficiency.
5.  Likewise, at the cognitive--cortical--level, a push-pull of excitation and inhibition can be observed during cognitive performance between areas in both perceptual and executive cortex, as well as as in association areas.
6.  The interplay of the two components of attention can be most vividly demonstrated in executive (prefrontal) cortex.  At its lowest hierarchical level, in the frontal eye and head fields, the push-pull of excitation-inhibition takes control of eye and head movements to ensure eye-fixation and audio-location.
7.  At higher prefrontal levels, attention control (part of cognitive control) serves the higher cognitive functions, facilitating what is in the focus of attention and inhibiting surrounding sensory or internal "noise," interference and irrelevance.
8. There, at cortical levels, the dorsolateral prefrontal cortex is in charge of the inclusionary aspect of attention (focus), whereas the ventrolateral prefrontal cortex is in charge of the exclusionary one (inhibitory control).
9. This applies even to the highest form of attention, which is working memory; indeed working memory is not another system or form of memory.  It is attention focused on an internal representation for a prospective action, choice or decision.
10.  None of this excludes subcortical areas from attention; far from it.  Visual attention, for example, can be increased by mild electrical stimulation of the mesencephalic reticular formation (Fuster, Science,1958).  Limbic influences enhance attention in neocortex by conveying emotional impact to perception and memory.
11.  ¿Can we attend to several things at the same time ("in parallel")?  Yes we can, but not with the same efficiency to all.  The most efficient attention is serial, or at most "by multiplexing."
12.  As with any cognitive function, when attention activates a certain area or areas beyond a certain level, we are conscious of the function and its content.  But consciousness, an almost obligatory companion of attention, is not a cognitive function per se, but a phenomenon (subjective awareness) of a shifting focus of high cortical network activation.
I hope these thoughts are helpful, at least as working hypotheses. 
Cheers, 
Joaquín
Publication: J.M. Fuster.  The Prefrontal Cortex (5th edition). Elsevier, 2015.
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If I want to lesion serotonergic neurons by this method to check DRN role in effects of amygdala stimulation in prefrontal cortex activity. How long should I wait from the 5,7-DHT injection until the second part of the experiment?
Thanks!
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We also can't find 5,7-DHT anywhere and have scoured the internet over the past few months.  Foreign chemical distributors that pop up online when you search for it have told us they no longer have it.  Anyone know of a source?  Or an alternative selective neurotoxin?  SERT-SAP doesn't work at terminals.     
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I am currently in my Honours year and my project used TMS on the right Temporal-parietal junction and right dorsolateral prefrontal cortex and observed it's effects on social cognition. We did not find significant results and I am just trying to explain why in my discussion. One of the reasons why I believe we did not achieve significant results is because the left hemisphere also is involved in social cognition and compensated for the disruption in the right hemisphere. My literature search has not yielded any studies that investigate lateralisation with TMS and was wondering if any actually existed??
Any help at all would be greatly appreciated!
Regards,
Kerman
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Dear Kerman, it definitely does.
1) As a general rule TMS does not have only local effects but also effects on remote areas that are connected (anatomically and effectively) to the stimulated area. Most cortical areas are connected to the contralateral hemisphere via the corpus callosum, therefore you will have a considerable impact also on the contralateral hemisphere. For a general idea on how a single TMS pulse affects the whole cortical mantle in a state-dependent manner you could check the seminal work by the Tononi group:
2) The pattern of callosal connections will somehow determine the topography of the impact. Since most callosal connections are with homologous contralateral areas (the same area on the opposite hemisphere), and only a minority seem to be hetronymous (non-symmetrical connections), it turns out that a good deal of the remote effects on the opposite hemisphere are on homologous regions. Evidence for this is widespread in the TMS literature, I will summarize the points that are coming to my mind right now:
a) short-latency transcallosal effects, mainly studied in the motor cortex and generally referrd to as transcallosal inhibition. Originally described in:
b) short-latency transcallosal effects between heteronymous regions (check for example:
c) TMS-EEG data
d) TMS-fMRI data. Check, just as an example, the data from concurrent TMS-fMRI:
or the data fromoffline TMS-fMRI:
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Who knows how to induce epileptiform activity in prefrontal cortex slice using field recording? I tried Mg-free ACSF but did not see any spike.
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high potassium, Bicuculline
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I'm looking for an antibody that nicely identifies GABAergic neurons (of all types). We have been using an anti-GAD67 (Millipore) or an anti-GABA (Sigma) antibodies with results leaving a little to desire. I'd be very thankful if you can help me find a good one. Our mouse brains are perfused in 4% PFA.Thanks a lot! Anne.
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Hi Anne, indeed a difficult question... But in the cortex and other areas we obtained quite a good staining using the Sigma polyclonal anti-GABA A2052... not sure if it is the same one you refer to. Anyway, staining conditions might be important:
- blocking O/N at 4 °C with 5% NGS, 0.2% TritonX, 1% DMSO
- primary anti-GABA 1:1000 O/N at 4 °C in blocking (5% NGS, 0.2% TritonX, 1% DMSO)
- O/N wash in TBS-T (1x TBS with 0.2% TritonX)
- secondary in blocking 1 hr at rt
I think the 1% DMSO helped a lot for the penetration of the Ab, provided your sections are not thicker than 30 um, otherwise we raise the DMSO to 2%. The Triton all the time is also helping for specificity. And for this Ab we had to wash very long to get rid of background. We always pretreat slices with 50 mM NH4Cl for 1 hr at rt to remove at best aldehyde-dependent background fluorescence (if your signal is not too strong, then this allows you to push a bit more the microscopy).
I have to say the MSNs in the striatum were not efficiently labelled with this Ab...
We also labelled specific subtypes of GABAergic neurons with parvalbumin (the most common basket cells and the large chandelier cells) and calbindin (the typical bitufted cells), which are pretty easy and efficient stainings (we use the monoclonals from Sigma).
Don't know if this is of any help, but good luck!
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I would need a paper or video that it shows me to dissect with accuracy the prefrontal cortex of mice for synaptosomes
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Thank you so much for your answers. 
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Can anyone elaborate upon the left prefrontal cortex retrieving simple information encoded whereas the right pre frontal lobe is able to retrieve difficult encodings. suggesting that the left side of the brain is suited to recollecting memories whereas the right side of the brain is more specialised in the area for familiarity-based traces that contain less detailed information. 
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basic ref. :
Craik, F. I., Govoni, R., Naveh-Benjamin, M., & Anderson, N. D. (1996). The effects of divided attention on encoding and retrieval processes in human memory. Journal of Experimental Psychology: General, 125(2), 159.‏
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Iidaka, T., Anderson, N. D., Kapur, S., Cabez, R., & Craik, F. I. (2000). The effect of divided attention on encoding and retrieval in episodic memory revealed by positron emission tomography. Journal of Cognitive Neuroscience, 12(2), 267-280.‏
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Naveh-Benjamin, M., Craik, F. I., Guez, J., & Dori, H. (1998). Effects of divided attention on encoding and retrieval processes in human memory: further support for an asymmetry. Journal of Experimental Psychology: Learning, Memory, and Cognition, 24(5), 1091.‏
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Naveh-Benjamin, M., & Guez, J. (2000). Effects of divided attention on encoding and retrieval processes: Assessment of attentional costs and a componential analysis. Journal of Experimental Psychology: Learning, Memory, and Cognition, 26(6), 1461.‏
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Guez, J., & Naveh-Benjamin, M. (2006). Divided attention at encoding and retrieval for once-and thrice-presented items: A micro-level analysis of attentional costs. European Journal of Cognitive Psychology, 18(6), 874-898.‏
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I want to provide a picture of which are the areas of prefrontal cortex I am mentioning to the readers of my review. However, google-ing (even on google.scholar or pubmed) could not help me find official coordinates or location discriptions of the vmPFC, dlPFC, orbitofrontal cortex etc.
I would think there should be an official map of this, how else can people state that they find something in e.g. the vmPFC?
Thank you very much for reading my question. I'd very much like to hear your advice/opinion!
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Hi Stephanie,
Prefrontal cortex was originally defined based on the projections of the thalamic mediodorsal nucleus. When you see references to the medial PFC it generally refers to the infralimbic, prelimbic and anterior cingulate cortices, while lateral PFC generally refers to various parts of the insular cortex including the granular (visceral), dysgranular (gustatory), and agranular (associative) parts. Orbital or orbitofrontal, cortex has four parts (medial, lateral, ventrolateral, and ventral) and is usually considered separately from PFC.
For a discussion of the various parts and their location in rat and monkey, see:
  • Uylings HB, Groenewegen HJ, Kolb B. 2003. Do rats have a prefrontal cortex? Behav Brain Res 146: 3-17
For cytoarchitectural definitions in the rat, see:
  • Krettek JE, Price JL. 1977. The cortical projections of the mediodorsal nucleus and adjacent thalamic nuclei in the rat. J Comp Neurol 171: 157-92
  • Cechetto DF, Saper CB. 1987. Evidence for a viscerotopic sensory representation in the cortex and thalamus in the rat. J Comp Neurol 262: 27-45
  • Allen GV, Saper CB, Hurley KM, Cechetto DF. 1991. Organization of visceral and limbic connections in the insular cortex of the rat. J Comp Neurol 311: 1-16
And to anticipate your next question about how visceral sensory and motor areas are involved in cognitive function, you may want to check out:
  • Craig AD. 2002. How do you feel? Interoception: the sense of the physiological condition of the body. Nat. Rev. Neurosci. 3: 655-66
  • Saper CB. 1996. Role of the cerebral cortex and striatum in emotional motor response. Prog Brain Res 107: 537-50
  • Nieuwenhuys R. 1996. The greater limbic system, the emotional motor system and the brain. Progress in brain research 107: 551-80 (and Neuwenhuys is at Nijmegen, if I'm not mistaken)
Hope this helps,
Rick
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I have found several imaging studies, but I am looking for more information on how this specific neurotransmitter could mediate PFC activity.
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serotonin supresses dACC output and enforces vACC output.
dACC has reciprocal projections with amygdala linked to learning about dangers and threats to our survival and well-being. dACC activates amygdala and vACC inhibits amygdalar response.
In addition serotonin directly inhibits anger, active avoidance and agressive response by supressing the output of amygdala.
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We all know that PFC is affected due to Major Depression. But i want to know which region of PFC is majorly affected?  Is it the VMPFC or the DLPFC? Because, most of the literature has focused up on DLPFC? Is that more correlated to depression than VMPFC?
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ventral anterior cingulate cortex (vACC) signals when things go well for us (it signals well-being: gaining safety, social and biological rewards, reaching a comfort zone or goals, feeling liked and accepted, satisfied, at ease), so it is underactive in depression. vACC induces serotonin release in DRN so has causal effect on feeling fine when upregulated and feeling down if suppressed. In contrast pregenual ACC (pgACC) is overactive in negative feelings of regret, when missing someone or feeling sorry. In addition worries and anxiety stimulate dorsal ACC (dACC) which further inhibits vACC.  dACC warns us about potential dangers and negative consequences such as pain, loss, harm. dACC signals to rest of brain when things go bad or wrong for us (i.e. getting negative feedback, rejection). So dACC and pgACC are overstimulated in depression.
DLPFC is known to be deactivated in depression because its neuronal spines get smaller and the lack of dopamine lowers DLPFC function. Thus the cognitive capability to learn new things and find out new ways to get out of current suboptimal state (pain, hurt, loss or failures) is weaker in depression. (when feeling down because of circumstances or because of drop in dopamine and serotonin signaling in brain).
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In Descartes' Error -- Antonio Damasio cites a study by Fulton and Jacobsen and evidence that certain kinds of damage to the ventromedial prefrontal areas can result in markedly reduced social interactions and indifference to one's future. What about the immediate present? Does the spontaneous sensory perimeter also lose its affective appreciation? Or is this mainly about projected future moments and directed behavior?
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I completely agree withBéatrice Marianne Ewalds-Kvist  that on ‘theory of mind’ tasks the medial prefrontal cortex (mPFC) plays a key role in the social understanding of others and with Kuan-Hua Chen that vmPFC patients only focus on the immediate-present goals (keeping money in the Trust Game) and ignore  the future negative consequences of  choosing again the same stimuli. I think, however, that it could be useful to take also into account some laterality effects that could play a role in these behavioural patterns.
According to some authors (e.g. Fuster J, The Prefrontal Cortex,Academic Press, London, 2008) there is some evidence of laterality in orbitomedial function with more right-sided than left-sided involvement in social/emotional functioning. For instance, Miller et al. (Dementia, 1993) contrasted the neuropsychological and behavioural characteristics of  patients with right and left fronto-temporal degeneration (FTD) and showed that in right-sided patients emotional and behavioural disinhibition were in the foreground, whereas no similar disorders were found in patients with left-sided FTD. More recently, Gomez-Beldarrain et al. (J Cogn Neurosci. 2004) have shown that patients with right frontal lesions are unable to assess and use advice to make predictive judgments. All these findings are consistent with the previously reported data, but stress the greater role played by the right orbital and medial PFC in emotional processing.
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 Greg Miller " Many details of the process of memory recall are not known (or are disputed). Even so, some researchers say it's time to revise some aspects of the standard view—such as the notion that the hippocampus is not involved in retrieving older episodic memories, and that memories become fixed and unchangeable once transferred to the neocortex. Newer work suggests a far more fluid role of memory, and one in which retrieval plays a crucial role in shaping memory over time"
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Maybe some of you might like my ideas on this question.
Just have a look! You don't even have to leave RG!
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Damasio et al. propose that somatic markers (feedback signals representing homoeostatic and other bodily states) play a pivotal role in our decision-making processes. The ventromedial prefrontal cortex (VMPFC) is identified as the cerebral module of most relevance to the somatic system. Emotions are understood by SMH advocates as the feeling of the bodily states reported by the markers. Sufferers of damage to the VMPFC have consistently demonstrated anomalous emotional dispositions accompanied by poor decision making (both time-costly and poor outcomes), in the absence of further detrament (no loss of iq, working memory...). The role of emotions in decision making is proposed to be that of restricting the options put up for conscious consideration, based on biasing signals from the body. There is here a suggesting of tacit learning by the body, prior to conscious knowledge. (See the Iowa gambling task)
Smith and Elsworth (1985) and apparently others since then have identified six "cognitive appraisal dimensions" that can help distinguish emotions. Certainty, pleasantness, attentional activity, control, anticipated effort, and responsibility are all features of appraisal patterns underlying distinct emotions, and helping to define them.
Thus, we may find that certain emotions such as happiness and anger may share more relevant features than two emotions of the same valence (positive/negative). Since happiness and anger both construe appraisals of certainty and a sense of individual control over the situation, such cognitive dimensions might play a bigger part in determining the nature of the decisions made than the simple positive/negative valence distinction alone.
Do such considerations necessary undercut the Somatic Marker Hypothesis? Is there room for it to accept such dimensions to our emotions, without selling itself short?
Many thanks
Adam
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Dear Adam, there is no evidence for somatic states directly influencing appraisal. The influence should be by means of brain systems. The problem is that functional anatomical hypotheses as the involvement of ventromedial PFC in appraisal do not distinguish between a brain system that instantiates the somatic feeling and a brain system that makes the cognitive appraisal. This kind of distinction is made in the attached paper that proposes that the neuronal network makes the cognitive job and the astroglial network instantiates feelings.
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Hello,
I would like to know what housekeeping genes one can use to discern gene expression changes in prefrontal cortex of Alzheimer's patients by qRT-PCR.
Many thanks.
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Hi Cemil,
you could check hu Hprt1 or hu GAPDH, maybe also hu Pgk1!
Cheers and good luck!!! 
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I found strong prefrontal projections to the lateral habenula in humans, with high fibre tract density around AM. It is possible that the PFC-LHb projections form collaterals in AM. AM is known for reciprocal connections with hippocampus, prefrontal cortex and retrosplenial cortex. What is its role?
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In general most research in rodents has focussed on spatial paradigms because it is easier to implement with rodents but some good evidence also indicate that, like in humans, the role of the anterior thalamus in general (ie not limited to tha AM) is not limited to the spatial domain.  Here are those evidence: Wolff et al., 2006 ; Marchand et al., 2013 (you can find both papers in my profile) but also a very interesting work from Law et al 2012 ( http://www.ncbi.nlm.nih.gov/pubmed/23025833 ).
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There seems to be a conflict, or at least confusion, in the literature whether the vmPFC and OFC are, in fact, separate areas. Additionally, the exact, or at least popularly accepted, location of these areas, seems quite elusive. Is this really a topic of contention, and is there any literature attempting to reconcile the many definitions and locations?
Thank you.
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Have you seen the papers by Price on this topic? If not, start here:
 D. Ongür, J.L. Price
The organization of networks within the orbital and medial prefrontal cortex of rats, monkeys and humans
Cereb. Cortex, 10 (2000), pp. 206–219
For a more recent take, with more on functional considerations, see: 
Haber, S. N., & Behrens, T. E. (2014). The neural network underlying incentive-based learning: implications for interpreting circuit disruptions in psychiatric disorders. Neuron, 83(5), 1019-1039.
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I am confused about the long-distance expression of ChR2. Recently, I injected AAV-ChR2 in ventral hippocampus of mice, After 4-6 weeks, I recorded the light-stimulated EPSC from prefrontal cortical slices. The ChR2 expression is good in vHIP, however, I had few fibers labelled to evoke blue light induced responses in prefrontal cortical slices~ Could someone help me?
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YFP-tagged CHR2 seems to work better than mCherry, especially in the distal projections, though perhaps there have been improvements in these newer variants.
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I want to micro dissect the brain of rats and mice to isolate hippocampus, prefrontal cortex and other brain parts. Can help me out to find the best video on micro dissection of brain either in youtube or any other website? Thank you.
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Hi Lakshmi Narendra,
You could refer to a book by Palkovits on brain maps. The title is : Maps and guide to micro-dissection of the rat brain.
If you would prefer videos as suggested by Ramirez-Franco,  Jove is a good place to look. Take a look at these as well:
Hope this helps!
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It is now well established that rodents exposed to chronic stress display apical dendritic shrinking in prefrontal cortex and hippocampus as well with no change in basal dendritic arborisation. I read numerous articles showing this neuronal specificity but nobody discuss it. So why such a specificity?
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Hi Thomas,
Your question is interesting.
Lately the authors of two articles [REDD1 is essential for stress-induced synaptic loss and depressive behaviour Nature Medicine, 2014, doi:10.1038/nm.3513]and (Multiparametric optical analysis of mitochondrial redox signals during neuronal physiology and pathology in vivo, Nature Medicine, 2014, doi: 10.1038/nm.3520) elucidated your question. Kristie at al al reported that prolonged, ‘hypoxic’ stress is associated with neuronal atrophy of cortical and limbic structures due to increase of an inhibitor of mammalian target of rapamycin complex-1 (mTORC1) in rat PFC. A decrease in phosphorylation of signalling targets of mTORC1 is implicated in protein synthesis-dependent synaptic plasticity deficits. Breckwold at al outlined that mitochondrial redox signal participate in neuronal physiology and disease. During ‘hypoxic’ stress they undergo ‘spontaneous ‘contractions. The contractions are amplified by acute or chronic neuronal insults.
In my article (AS Nikiforova, Stress-induced gastrointestinal motility is responsible for epileptic susceptibility, Medical Hypotheses 82(2014);442-451) I postulate that stress has two phases (mental and emotional). The first phase is ‘non-recognizable’ by CNS i.e. the circular muscles react by prolonged, involuntary high in force ischemic contractions and suppression of their phasic contractions during an uncontrollable stress. A positive feedback loop from gut caused by activation of morphine-receptors’ (MOR) endogenous mediator-modulators sustain the vicious cycle by involving peripheral and interconnected peripheral/brain circuits. The MOR receptors are situated on the surface of glutamergic neurons but not on GABAergic neurons. They endogenous agonists have powerful effect on connection between nucleus Tractus Solitaries (NTS) and dorsal motor nucleus of vagus (DMNV). The opioid peptides inhibit all of the glumatergic currents between the NTS and the DMNV without of need for increasing the activity of cAMP pathway. The inhibition makes synapses unavailable for modulation and low level of c AMP activity keep the MOR inaccessible intracellular compartments. The MOR agonists are available for activation resulting in decrease in the net charge of GABAergic input to DMNV neurons and by thus increase the afferent/efferent input/output of non-cholinergic/non-adrenergic neurotransmitters. The circular ischemic contractions produce specific electrographic changes in gut motility that are mechanotransduced continuously along the engaged circuits. The continuous circulation ensure memorization of the patterns. Due to the suppression of the phasic circular muscles’ contractions the circuits are deprived from ‘burst’ signalization that appears on the depolarised potential of the slow wave. This deprivation might be responsible for apical dendritic shrinking in PFC. Moreover, COOK SC and Wellman CL (Chronic stress alters dendritic morphology in rat medial prefrontal cortex doi:10.1002/neu.20025) reported about reorganization in pyramidal neurons in layer II-III of medial PFC. The authors found out a significant alteration of apical dendrites in stressed animals (the number and length of apical dendritic branches was reduced by 18 and 32% respectively. On the other hand, basiliar dendrites were not affected. Murmi at al (Changes of spine density and dendritic complexity in the prefrontal cortex in offspring of mothers exposed to stress during pregnancy doi:10.111/j.1460-9568.2006.05024.x) found out that the development of layer II-III of pyramidal neurons in dorsal anterior cingulate (ACd) and orbitofrontal cortex (OFC) is significantly affected in offspring of mother exposed to stress during pregnancy. The results showed lower spine density on the apical dendrite as well as in both cortical areas a significant reduction of dendritic length was found in apical dendrites.
Regards,
Assia
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Or in other words at what sampling rate can I equate blood in a volume of tissue containing capillaries to be stationary?
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Functional near infra red spectroscopy (fNIRS) is exactly the reason I am asking for the capillary blood flow velocity. It seems most of the work has looked at the BOLD vascular response. There is about a 4-8 seconds lag between an event and the vascular response. Consequently, the fNIRS signal
Is low pass filtered at 0.14 Hz.
There is however a local response as well. Without the vascular response the brain really does not have a whole lot of oxygen surplus. So, if the blood flow is slow enough and the sampling rate fast enough, one may be able to pick up the local response of the oxygen level to the use of oxygen by brain cells that are using it to burn fuel. It turns out that the capillary blood velocity is in the order if 0.8 mm pet second. So, at 800 samples per second a volume of. Blood in the capilaries would only have moved about a micrometer. Pretty stationary if we can sample that fast.
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Based on what I found on web pages, it seems it's not. But since mPFC has intensive neural connectivities with limbic structures, it involved in functions (e.g. cognitive control, memory, emotional regulation etc.) that are usually related to limbic system, and often to be found to have structural/functional abnormalities in psychiatric disorders along with limbic structures. However, generally speaking, it's not a part of limbic system. Can I say that?
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It is much more important to see the functions (!), i.e., systemic approach, then looking at (older) anatomic drawings and 'pedigrees'. For example, the orbitofrontal cortex (OFC) - a part of the 'lower' prefrontal cortex (PFC) -, and/or the anterior cingulate cortex (ACC), are FUNCTIONALLY bridging limbic functions (and structures) towards the frontal brain. One of their (ACC, OFC) function is to control limbic activity. Some authors thus see them (these portions of the PFC) as "most" limbic part of the frontal/prefrontal brain, others call them the "upper limbic" system (or the upper limbic "level", out of three), or the "most cortical" (i.e., "most prefrontal") part of the limbic system.
Because of these bridging functions, many authors define said parts of the PFC - with close bonds to core limbic areas - as part of the "paralimbic" (or" perilimbic") brain.
Hope that helps. Tobias
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Anyone tried DARPP-32(Thr34 and Thr75) on mPFC tissue? Does frozen tissue from fresh decap work for these assays?
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Surely it works fine if you have quickly transferred the tissue to appropriate thermal conditions (< -20C at least). I always transfer the fresh tissue immediately to centrifuge tubes onto liquid N2 during brain dissection and then to -80C. Virtually, any piece of brain is enough for running a blot with 25 ug of protein. Particularly, I haven't tried the mPFC though I got good immunodetections (total, Thr34 and Thr75) using only 1/3 of total PFC. Just make sure you are gonna use an appropriated lysis buffer with protease and phosphatase inhibitors if you want to keep the phosphorylation sites intact. Good luck!