Science method

Precipitation - Science method

. Precipitation occurs when a local portion of the atmosphere becomes saturated with water vapour, so that the water condenses and "precipitates," in the form of rain, drizzle, sleet, snow, graupel, or hail.
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I am trying to extract gDNA from culturable endophytes isolated from Gum trees but have not been getting good result from the protocol attached. The endophytes are pigmented.
I used mycelia of endophytes cultured in broth. After centrifuge of precipitation step, the DNA pellete was contaminated with dark colour (dark pellete). So I did not proceed further.
I than repeat the extraction but this time I ground mycelia in liquid nitrogen and use the same extraction protocol. I obtained white precipitated DNA pellet unlike the previous one. Then I dissolved DNA pellete in milliQ water. The NanoDrop readings were well below A260/230 and DNA yield was very poor.
If anyone/experts of endophytes can help me with DNA extraction advice.
I am using fresh mycelia of endophytes cultured in both broth and on solid agar. Both still hasn't yield good result.
DNA extraction protocol attached.
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I have searched the web for some possible solutions and advice for your problem. Here are some of the results that I found:
  • A simple and efficient method for DNA extraction from grapevine cultivars, Vitis species and Ampelopsis by A. Lodhi, G. N. Ye, N. F. Weeden, and B. I. Reisch, Plant Molecular Biology Reporter, vol. 12, no. 1, pp. 6-13, 1994. This paper describes a method for DNA extraction from grapevine and related genera using cetyltrimethylammonium bromide (CTAB) buffer and polyvinylpyrrolidone (PVP). The method is reported to be effective for removing polysaccharides, polyphenols, and other contaminants that interfere with DNA quality and quantity. The method is also suitable for PCR amplification of DNA fragments.
  • A rapid and efficient method for isolating high quality DNA from leaves of carnivorous plants from the Drosera genus by M. Tretyakova, A. Romanovskaya, A. Shmakov, and V. Sizykh, BMC Research Notes, vol. 7, no. 1, 926, 2014. This paper presents a method for isolating high quality DNA from leaves of carnivorous plants from the Drosera genus using CTAB buffer and PVP. The method is claimed to be rapid and efficient, as it takes less than 3 h to complete and yields DNA with high purity and integrity. The method is also compatible with PCR amplification of DNA fragments.
  • A simple method for isolation of genomic DNA from fresh and dry leaves of Terminalia arjuna (Roxb.) Wight & Arn., a medicinal plant by S. Kaur, R. Ahuja, S. Kumar, R. Chaudhury, and A. Srivastava, Molecular Biotechnology, vol. 40, no. 2, pp. 167-172, 2008. This paper describes a method for isolating genomic DNA from fresh and dry leaves of Terminalia arjuna, a medicinal plant with high levels of secondary metabolites that hamper DNA extraction. The method involves the use of CTAB buffer with PVP and β-mercaptoethanol (β-ME), followed by chloroform-isoamyl alcohol (CIA) extraction and isopropanol precipitation. The method is reported to yield high quality DNA that can be used for PCR amplification of DNA fragments.
Based on these results, it seems that CTAB buffer with PVP is a common solution for extracting DNA from plant materials that have high amounts of pigments and other contaminants that affect DNA quality and quantity. You may want to try this method or modify it according to your needs and see if it works better than the protocol you attached.
Here are the references
: [A simple and efficient method for DNA extraction from grapevine cultivars, Vitis species and Ampelopsis] by A. Lodhi, G. N. Ye, N. F. Weeden, and B. I. Reisch, Plant Molecular Biology Reporter, vol. 12, no. 1, pp. 6-13, 1994.
: [A rapid and efficient method for isolating high quality DNA from leaves of carnivorous plants from the Drosera genus] by M. Tretyakova, A. Romanovskaya, A. Shmakov, and V. Sizykh, BMC Research Notes, vol. 7, no. 1, 926, 2014.
: [A simple method for isolation of genomic DNA from fresh and dry leaves of Terminalia arjuna (Roxb.) Wight & Arn., a medicinal plant] by S. Kaur, R. Ahuja, S. Kumar, R. Chaudhury, and A. Srivastava, Molecular Biotechnology, vol. 40, no. 2, pp. 167-172, 2008.
Annulohypoxylon sp. strain MUS1, an endophytic fungus isolate...
Good luck
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Which type of cloud is most likely to produce precipitation and process in which any product of condensation of atmospheric water vapour falls under gravity?
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Dr Raffaele Salerno thank you for your contribution to the discussion
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Antimicrobial material which is insoluble in water. When I dissolve in DMSO and diluted it with water(%10), it precipitated in the bottom of the tube. how can I use material for antimicrobial test?
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Surfactants do not "dissolve" - they emulsify and disperse
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I have experience in studying the impact of hydrogeology on catastrophic floods. An example would be the flooding in Europe in the summer of 2002. See my discussion "How is geodynamics and hydrogeology taken into account?". see my publication "Floods and droughts as a result of deformability of the geological environment" for details.
The water content of the rivers is formed by atmospheric precipitation and underground waters. Influence of underground waters on water content of the rivers cannot be measured. It is shown that the volume of underground water exchange is underestimated and can be commensurable with a volume of atmospheric precipitation. Change of level of underground waters is defined by changes of volume of the geological environment during geodeformations. It is offered to consider geodeformations as one of the reasons of floods and droughts. Studied the changes the gravitational field and geodeformations during droughts and floods in the Amazon in 2005-2006. Studied the hydrological regime of the River Nile. Shows the influence of geodeformation on the level of Danube and Dniester. Proposed detailed study the causes of floods in Europe in 2002. Influence of the Earth’s surface deformation on floods and droughts is very important and requires special detailed study. Changes in volume of rocks during Earth's surface deformation are accompanied by dilatancy which influence on the amount of drought and flooding has turned out to be significant. Study of the processes considered in the thesis gives grounds to expect that floods and droughts associated with deformations of the geological environment will be successfully predicted. Foto https://www.google.com/url?sa=i&url=https%3A%2F%2Fren.tv%2Fnews%2Fv-mire%2F1138805-v-chernomorskom-regione-turtsii-livni-vyzvali-navodneniia&psig=AOvVaw2SdhsJ2lm16vYlBvplRoZX&ust=1694020292799000&source=images&cd=vfe&opi=89978449&ved=2ahUKEwjyktC_-5OBAxWdEBAIHSPSCyEQr4kDegQIARBc
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Before the earthquake in Algeria (map), during the stretching of the earth's crust, convective clouds formed in the desert (water evaporated from the surface of the earth???). https://www.sat24.com/history.aspx Where did the water come from there that day?
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I have a sample in the dissolved state. Acetone acts as an anti-solvent to precipitate the substance from the DMSO solution. However, the recovery yield is low. Is there any method to collect the samples in maximum yield?
Filtration can't be used as it will decrease the yield. I'm using centrifugation, to collect the samples now. Does anybody have any suggestions?
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Even Xu Thank u. But, I'm working with chemical polymers.
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I am producing a flocculent precipitate when doing free radical polymerization of itaconic acid in aqueous solution, what should this substance be? How is it produced?The initiator is sodium persulfate at five percent of the total reactants, and the reaction temperature is 80 ℃.
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I don't think 5000 MW is a polymer, may be it is a true oligomer. You should search and find kinetics studies on MW evolution with respect to polymerization time. These are old studies. My Regards
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With the help of standardized Precipitation Evapotranspiration Index how we get return period of drought?
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This article might be helpful for you:
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We synthesized a peptide made up of 7 amino acids. After cleaving the peptide with TFA, we tried to precipitate the peptide from cold ether. However, it seems like our peptide is somehow soluble in ether. Are there any other organic solvents to precipitate peptides?
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You could lyophilize the mixed solution TFA-ether that contains the peptide.
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Hello, could someone assist me in interpreting the results of the sequential Mann-Kendall Sneyer test? Indeed, according to Dufek (2008: Precipitation variability in São Paulo State, Brazil), "In the absence of any trend, the graphical representation of the direct series (u(t)) and the backward series (u'(t)) obtained with this method yields curves that overlap several times." In my case, I observe two to three overlaps, often with sequences that exhibit significant trends. Should I also conclude that there is an absence of trends in my dataset?
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Ma'Mon Abu Hammad Could you advise me on some documentation about this test?
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How can I train an ANN using current raster data (population, precipitation, DEM, land use) and use this model to predict future land use based on upcoming raster data (population, precipitation, temperature)?
I've been studying the relevant theory extensively recently, and I'd like to find a case study to see how it's practically implemented. Could you please guide me to where I can find similar case studies? I've noticed that many papers follow this approach, but I'm struggling to locate any code examples.
If there are no case studies available, I'd like to understand how to use raster data as inputs for an ANN and what preprocessing steps are needed, especially when dealing with multiple raster data inputs.
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Hi,
utilizing an Artificial Neural Network (ANN) to predict land use based on raster data is a potent application of machine learning in geospatial analysis. This approach involves training a model on historical raster data, such as population, precipitation, Digital Elevation Model (DEM), and existing land use, and then leveraging this trained model to forecast future land use patterns using forthcoming raster data containing parameters like population, precipitation, and temperature.
To practically implement this approach, you can follow these steps:
  1. Data Collection and Preprocessing:Gather historical raster data encompassing relevant variables like population, precipitation, DEM, and land use maps. Acquire future raster data with the same variables but updated parameters (population, precipitation, temperature). Ensure consistent spatial resolution, extent, and coordinate system for all raster datasets. Convert categorical data, like land use types, into numerical representations, potentially using one-hot encoding.
  2. Data Splitting:Divide the historical raster data into training and validation sets. The validation set helps in monitoring the model's performance during training. Organize the data as input-output pairs, where the inputs consist of combined raster data (population, precipitation, DEM, etc.), and the output is the corresponding land use category.
  3. Feature Standardization and Normalization:Standardize numerical features (e.g., population) to have a mean of 0 and standard deviation of 1 to aid model convergence. Normalize data within a specific range (e.g., [0, 1]) to prevent any feature from dominating the learning process.
  4. ANN Model Architecture:Design the neural network architecture with an input layer that matches the number of features in your raster data and output layers that correspond to the number of land use classes. Incorporate hidden layers with appropriate activation functions (e.g., ReLU) to capture complex relationships between input features.
  5. Model Training:Train the ANN using the training dataset and monitor its performance on the validation set. Optimize the model's parameters (weights and biases) using backpropagation and optimization algorithms (e.g., Adam, SGD). Utilize appropriate loss functions (e.g., categorical cross-entropy) to quantify the model's prediction accuracy.
  6. Model Evaluation:Assess the model's performance on the validation set using metrics like accuracy, F1-score, and confusion matrix. Fine-tune hyperparameters (e.g., learning rate, number of hidden layers, neurons per layer) based on validation performance.
  7. Future Land Use Prediction:Once the model is trained and validated, input the upcoming raster data (population, precipitation, temperature) to predict future land use patterns. The model's output will be a probability distribution across land use classes; you can choose the class with the highest probability as the predicted land use.
As for case studies and code examples, you can explore academic journals, conferences, and online repositories like GitHub. Many researchers have indeed explored this approach, but the specific code examples might not be readily available due to variations in dataset availability and implementation choices. Look for papers that discuss their methodology in detail; they often provide insights into the data preprocessing, model architecture, and evaluation techniques used.
If you find my reply is useful , please recommend it .Thanks
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Hallo,
I have produced citric acid crosslinked samples of magnesium and sodium lignosulphonates and tried to precipitate my samples as they were water soluble during washing .I tried to preciptate with 0,1M , 1M and 2M HCl but none of it caused precipitation of my sample.The pH of the crosslinked sample was between 3-4.
Could anybody please suggest any other methods to precipitate the sample or a possible reason for no precipiation.
Thank you very much
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Anumol James Addition of alcohol?
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I performed DLS on purified exosomes with an EXO SPIN kit (precipitation and size exclusion chromatography) the Z-average was too big and the result wasn’t good I should mention that to break up aggregations I do sonication before analysis. Does anyone have any idea? Could filtering through 0.2 µm be a solver?
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Hi,
Exosome size measurements through DLS tend to be variable , thus should be repeated several times in single as well as multiple different preparations, in order to reach a cumulative particle size range . Please pay attention towards QC report at the end of each measurement ('Good' report means acceptable results). Further you may need to modify the default DLS protocol method in order to fit EV measurements.
Filtering through 0.2um could be helpful but sonication will break up the EV particles giving incorrect sizes.
NTA is a better method to quantify EV size and concentration.
Regards
Neha
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Hi
I work on complex fe(iii)-tannic acid , but I find precipitate of blue-black color, although ph=2
Can any one help me?
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Dear Dr Sallam
The formation of a blue-black precipitate when iron(III) is mixed with tannic acid can be attributed to the formation of a complex between the two substances. Iron(III) ions (Fe³⁺) have the ability to form coordination complexes with various ligands, and tannic acid is a polyphenolic compound with multiple functional groups that can serve as ligands. The blue-black color of the precipitate suggests the presence of a specific complex that exhibits this color.
In a low pH environment (pH=2, as you mentioned), tannic acid molecules are likely to be partially or fully protonated, resulting in a higher concentration of positively charged species. These positively charged tannic acid species can interact with the negatively charged iron(III) ions, leading to the formation of coordination complexes.
The exact structure and composition of the complex formed between iron(III) and tannic acid can vary depending on factors such as the molar ratio of the reactants, the specific functional groups on the tannic acid molecules, and the conditions under which the reaction takes place. One possible complex that could contribute to the blue-black color is the iron(III)-tannic acid complex called "iron(III)-tannate" or "ferric tannate."
The blue-black color might arise from the interaction of the complex's structure with light, leading to absorption and reflection of certain wavelengths that result in this particular color perception. The complexity of the formed complex, along with its arrangement and electronic transitions, can contribute to the observed color.
If you're working with these complexes and observing the formation of a blue-black precipitate, it's likely that you are indeed forming a specific iron(III)-tannic acid complex. Characterizing this complex through techniques like spectroscopy (UV-Vis, IR, etc.) and elemental analysis could provide more insight into its structure and properties.
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Tell me, on which rim of the centrifuge (G) can the suspension of plant cells be precipitated without damaging the cells?
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Dear Ekaterina Anatolyevna Lapchenko,
Unfortunately, I do not have any experience or knowledge about this subject.
Best regards.
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I have been purifying a His-tagged protein first using Ni-NTA chromatography and then Gel Filtration. After purifying using Ni-NTA, the protein seems to be precipitated after keeping the protein overnight on ice (or even for few hours). The protein was eluted using a gradient of buffer using 500 mM Imidazole (in a buffer of 20 mM Sodium phosphate, 500 mM NaCl, 10% Glycerol, 1 mM DTT). I tried to remove the precipitation by centrifuging but it seems majority of it seems to be completely precipitated (very less in soluble fraction).
Any ideas? Thank you
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DTT reduces the Ni-NTA to Nickel solid making a brown precipitate. Did you observe that? Phosphate salts are have low solubility especially at cold temperatures in the cold room so if the sodium phosphate is precipitating, your protein is dissolved in it so it is precipitating with the sodium phosphate. Tris and Hepes are more soluble buffers and are better options and I think Tris is cheaper.
Your protein is least soluble when the pH of the solution equals the isoelectric point of your protein (pI) because the protein is uncharged at the isoelectric point. But for binding to Ni-NTA, the pH of the buffer has to be pH >= 7.8 because at lower pH, the polystidine tag is protonated and so it can't bind to Ni-NTA.
Plug your protein sequence into ProtParam to estimate the isoelectric point:
Try to avoid having the pH of your buffer being near the isoelectric point.
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In the past I have conjugated an acid to polyethyleneimine with percentage conjugation of around 25%. I wanted to increase this percentage, and so I doubled the amount of acid, EDC and NHS before this solution was added to the polyethyleneimine. After allowing to react in methanol, with no solubility issues, after I precipitated the polymer as normal in diethyl ether, I have found it is now insoluble in water or methanol. However, there was no suggestion of the polymer "crashing out" of solution in methanol while the reaction was stirring. Why is the polymer precipitate suddenly insoluble when this has never been an issue previously? The acid I am using is a simple phenylboronic acid.
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Yuri Mirgorod thanksnfor your help. Yes we found by lowering the pH of the solution we were able to dissolve the precipitate. Also found a paper regarding if PEI amines are unconjugated the amines will intertwine and need to be charged to electrostatically repel and allow dissolution.
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I test BOD of inlet sample of sewage water, in which there is no problem in inital DO but when i incubate it for 5 days, after incubation when i go for estimation of final DO, on addition of MnSo4 &Azide respectively the colour of bottle turns white insted of yellow & finally on addtion of H2So4 it totally yruns transparent. Whereas the other two samples of blank and outlet does not show such change.
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Dear Parvaiz,
Here is some additional information that may also be of interest. The brown precipitate is MnO(OH)2, containing Mn(IV), which forms when dissolved oxygen (DO) oxidizes the Mn(II) added in the form Mn(OH)2. If there is no DO in the sample after incubation, then the brown color will not form. Were the inlet samples sufficiently diluted so that some DO remained after the 5-day incubation? A dilution factor of 20-60 or more may be needed, depending on the sewage strength.
By the way, the azide is used to prevent interference caused by any nitrite present. If the lab sink has a U-trap made of lead, the unreacted azide going down the drain when you pour out the BOD bottles can react with the lead to form explosive lead azide (PbN6), posing a real risk to any plumber or other person who services or otherwise contacts the trap.
Best of luck with your work!
- Peter
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I am working on #RNA SELEX. During the process of converting RNA to cDNA, I found precipitation in the RT product. Can anyone suggest to me how to get rid of this precipitation? i am guessing I am not converting all RNA to cDNA; this precipitation might be the secondary structure formation. How to minimize this precipitate formation?
Thanks
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No, ethanol would not do anything of note, and the probability of 'leftover ethanol' being present should be zero.
Also, you state that your concentration is "very high, 3750ug" but this is an amount, not a concentration. 3750ug per what?
It would probably help, to be honest, if you provided a lot more detail about what you're doing at each step, and why you're doing it that way.
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I have precipitated out the protein using acetone from the alkaline-base buffer (NaOH + SDS+ EDTA + Beta Mercaptoethanol).
Desiccated Precipitates weigh more than the sample i.e for 2 grams of hair sample used, I am getting 2.6 grams of precipitates
Can one guide me on how can i separate my protein from the Desiccated Precipitates? Due to a limited budget, I can't use fancy techniques.
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You may also test meoh-chlorofom Folch precipitation method to get proteome as an interphase pellet...Alternatively, Trizol extraction could be beneficial...Trial and error-based approaches to get the highest recovery...
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I am doing Trend analysis. When I was doing Homogeneity tests ( Pettitt, SNHT test, Buishand, von Neumann) on Precipitation and Temperature time series using XLSTAT, I found that a great number of my Temperature data are inhomogeneous. Can anybody tell me How can I make them homogeneous data?
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Use normalization techniques such as min-max normalization or z-score normalization. Another method is to use feature scaling techniques such as standardization or normalization.
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I'm trying to reconstruct the time series of a weather station over the whole 1991-2020 period by using an external model as predictor.
I've successfully used ERA5-Land as predictor for temperature as the correlation with station data is quite high, however I'm struggling to do the same for precipitation.
What is the best alternative to reanalysis in this case? I was thinking about datasets of daily precipitation measured from satellite but the data seems to be quite coarse.
In my case I have the following requirements
  • Temporal coverage from 1991-01-01 onwards (at least until 2020-12-31, but extension to present is quite important)
  • Daily accumulated precipitation
  • Grid spacing lower than 0.25 degrees
  • Coverage of the Mediterranean area
You have any suggestions on which dataset I could use?
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Hello Guido,
try The Satellite Precipitation - CMORPH Climate Data Record (CDR) consists of satellite precipitation estimates that have been bias corrected and reprocessed using the the Climate Prediction Center (CPC) Morphing Technique (MORPH) to form a global, high resolution precipitation analysis. Data is reprocessed on a global grid with 8km-by-8km spatial resolution. Temporal resolution is 30 minutes over a 20 year period of record (January 1998–present). The output precipitation fields are produced on three different time-space resolutions to accommodate a variety of user requirements.
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We have been trying to detect cytokines from equine synovial fluid using milliplex equine cytokine/chemokine magnetic bead panel. However it is rather hard and the values are always below detection. Is there anyway we can improve our sample? Can TCA acetone precipitation help concentrating the proteins and would the proteins still be detectable if we use this method?
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With the Target 96 Immunopanels (INF, IO, IR) or the T48 cytokine panel you should be able to cover most (if not all) of your targets of interest.
Shoot me an email and I connect you to the closest sales person, if you are inetrested.
All the best,
Michael
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Hello, I tried to prepare 10g/L MnCl2 solution but it got precipitated. What can be the possible reasons?
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One possibility is that it is MgCO3 that is being precipitated with the carbonate being supplied from CO2 in the air. Are you using distilled or tap water?
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Hello all,
We cultured MSCs on calcium phosphate discs for 3 days and 7 days. We are seeing strange crystal-like precipitates or something of the sort (images attached). They are found wherever cells are found, or nearby cells, that are growing on the surface of the discs. We did EDS on these samples out of curiosity and the crystals appear to have a high concentration of NaCl, which indicates that they are salts.
I can't find any literature that shows this happening in their cell studies. Has anyone else seen this sort of thing happen in their cell cultures? I have no idea what could explain these results and I would appreciate some insights, or hypotheses, if any.
Thanks!
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Interesting observation! Based on your description, it seems like the crystals could indeed be salt precipitates. There could be several reasons for this, here are a few possible explanations. Media evaporation: If your cultures are not fully sealed or the incubator is not properly humidified, evaporation could cause the salts in the culture medium to become more concentrated over time. This might lead to precipitation, especially near cells which could act as nucleation points for crystal formation. Interaction with the disc material: Calcium phosphate could be reacting with components of the culture medium, leading to formation of insoluble salts. I hope these ideas help you in understanding and investigating this phenomenon further!
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I purified one protein using 3 different columns. The last column I used is Butyl 650M hydrophobic interaction column and I eluted my target protein with 50% propylene glycol. I need to remove propylene glycol and concentrate my elution. I tried to remove it with acetone precipitation, and methanol chloroform precipitation. However, both of them resulted in a significant loss of my protein.
I wonder If I can use dialysis or not...due to its water-absorbing characteristic...
I do not want to add additional steps like gel filtration chromatography...
Does anyone have any technical suggestions and ideas?
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Ultrafiltration...
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Hi Everyone
I need to improve the solubility of Potassium Humates in hard water. Generally, potassium humates are soluble in hard water but within a few minutes, it has precipitated due to the complexation of humates with Ca & Mg ions. Can anyone help me to avoid this precipitation or sedimentation?
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I suggest doing the dilution little by little under agitation and heating and doing a treatment to reduce the hard water salts. You could decalcify using ion exchange resins to capture calcium and magnesium from hard water.
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The Impact of Climate Change on Water Resources..... how do you measure precipitation threshold to be classified as a storm event in louisiana?
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Let me answer your first Q about "The impact of climate change on water resources" - Climate change messing with our water resources is a big worry. it messes up how rain falls, makes crazy weather happen more often, and messes with how water moves around. need to understand how storms affect water supply, floods, and nature. It's all about dealing with climate change and how it affects our precious water!
In Malaysia, how we define a storm event differs depending on where you are and who's studying it. But generally, we do a few things to figure it out:
Step 1: collect rainfall data from various weather stations nationwide. measure how much rain falls and for how long, usually every hour or day.
Step 2: look at all that rainfall data to spot any cool patterns or trends. watch for crazy heavy rain that goes on for a long time – that's when it might be a storm event!
Step 3: Using historical data and climate patterns, set a certain level of rain that makes something a storm event in that specific area. this can vary depending on the local climate and the place's geography.
Step 4: Storm events can be classified in different ways – like how much rain falls in an hour or the total rainfall over a specific time period. It helps to understand what's considered a storm.
Step 5: Check older data to find past storm events. This helps to see how often and intense storms were in the past and if anything changes.
Step 6: with climate change messing things up, we must look at historical data differently and consider how storms might change over time. Use fancy climate models to predict future rainfall trends and how storms could evolve in the future.
Step 7: keep a close watch on rainfall data all the time and update our storm event rules regularly. This helps us adapt to any changes caused by climate change messing with our rain patterns.
Hope this could help! If we stay curious and keep studying our weather, we can better understand how to deal with storms and climate change's impact on our precious water resources.
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Hello, I am an undergrad trying to follow the methodology of the paper attached. I'm working with 50 mM phosphate buffer and 250 mM MgCl2 for hexokinase phosphorylation of CNF. I don't entirely understand why that concentration of buffer was used, and I keep getting Mg(OH)2 precipitates upon trying to get to pH 7.6. What could I be doing wrong?
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Often it is magnesium phosphate that is the precipitate. Usually you formulate your phosphate buffer to be the right pH based on the mix of mono- and di-basic phosphate that you add and then autoclave. You then add the magnesium when cold from a separate stock solution.
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Climate Data Operators (CDO)
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Dear Awad, to calculate seasonal precipitation Anomaly for 30 years using CDO you can do this as follows:
cdo ymonmean infile.nc outfile_climatology.nc #### The command "cdo ymonmean" is used to calculate the monthly mean of a dataset
and then
cdo ymonsub infile.nc outfile_climatology.nc outfile_anomalies.nc ####cdo ymonsub is used to calculate monthly anomalies from monthly climatologies
I hope this can help you
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Please somebody can share a script for ( to run on CDS toolbox editor https://cds.climate.copernicus.eu/toolbox-editor ) daily total precipitation data extraction on a point location for custom period (several years) ?
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Guyen Battuvshin, many thanks for your answer! I am just worring about "climate.daily_mean()" function - it is decleared to calculate only average value for each day, so here I see an issue.... or this function work in another way with precipitation data... Do you check results of this output?
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My polyurethane like polymer, when precipitated in ether gives a lower Mn while the same when precipitated in methanol gives a higher Mn. I have looked a lot in the literature to find some good explanation to it but seems to get nothing. Can someone please explain me.
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Dear all, in the precipitation process one should consider the binary state of solvent/nonsolvent mixture. In which solvent PU is being dissolved ? My Regards
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involving stations which have been set up recently in SPI mapping
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In addition to the excellent approach mentioned by Enda William O'Brien, which involves statistical adjustments based on available data, it is also possible to adopt approaches that take into account the scarcity of available data. One such approach is spatial interpolation, which is highly useful for estimating precipitation values in locations with insufficient data. By utilizing information from nearby stations with more complete records, it is possible to fill in the data gaps of recently installed stations.
Furthermore, historical data analysis from nearby stations with longer precipitation records can be employed to infer precipitation patterns in the area and fill in the data gaps of the new station, allowing for a better understanding of the climatic context in which the Standardized Precipitation Index (SPI) is being calculated.
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I have downloaded two types of half-hourly and three-hourly satellite precipitation data for the study area from Gportal. Now I have a question about those data, please help in this regard.
GPM_3IMERGHH half-hourly NetCDF file
3B-HHR.MS.MRG.3IMERG.20170322-S000000-E002959.0000.V06B.HDF5.SUB.nc4
Question 1: Does this file cover the amount of precipitation from 23:45 UTC of the previous day to 00:15 UTC of the current day or it represents the period from 23:30 UTC of the previous day to 00:00 UTC of the current day?
GPM_3IMERGHH half-hourly NetCDF file
3B-HHR.MS.MRG.3IMERG.20170321-S103000-E105959.0630.V06B.HDF5.SUB
Question 2: Does this file cover the amount of precipitation from 10:00 UTC of the current day to 10:30 UTC of the current day or it represents the period from 10:15 UTC of the current day to 10:45 UTC of the current day?
TRMM_3B42RT three-hourly NetCDF file
3B42.20170302.00.7.HDF.nc4
Question 3: Does this file cover the amount of precipitation from 22:30 UTC of the previous day to 01:30 UTC of the current day or it represents the period from 21:00 UTC of the previous day to 00:00 UTC of the current day?
GSMAP 1-hourly HDF file
GPMMRG_MAP_1703021800_H_L3S_MCH_04C.h5
Question 4: Does this file cover the amount of precipitation from 17:00 UTC of the current day to 18:00 UTC of the current day or it represents the period from 17:30 UTC of the current day to 18:30 UTC of the current day?
Kindest regards
Mahdavi
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Thanks to everyone, I got the necessary response from the support of the above products.
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I used linalool standard for estimating total terpenoid content for my plant sample, different linalool concentration has been taken and finally the supernatant has been discarded, the red precipitate ring is treated with solvent. while discarding the supernatant either micro ml of precipitate been drawn or left with micro ml of supernatant, due to this i am unable to draw a standard curve and the values are non-linear . kindly help me out to find a better way for doing this experiment
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Thank u for ur response Sir . But my work is to just estimate the total count of terpenoid using basic standard protocol. Now I switched to ursolic acid with some modified procedure for this estimation.
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  • Numerous studies have suggested that carbonation and serpentinization of silicate minerals are controlled by an interface-coupled dissolution-precipitation mechanism (e.g., Putnis, 2002, 2009, 2014; Plümper et al., 2012; Altree-Williams et al., 2015).
  • Moreover, this mechanism can lead to the pseudomorphic (isovolumetric) replacement of the parent phase by the product phase, assuming that the dissolution of the parent phase and the precipitation of the product are coupled in both space and time (Brugger et al., 2010; Putnis, 2009; Qian et al., 2010; Altree-Williams et al., 2015).
  • However, I'm curious about the question that "could the interface-coupled dissolution-precipitation mechanism necessarily also not lead to pseudomorphic texture generation?".
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The interface-coupled dissolution-precipitation mechanism, while often resulting in pseudomorphic replacement of the parent phase by the product phase, does not necessarily always lead to pseudomorphic texture generation.
This is because the generation of pseudomorphic textures depends on several conditions being met, including isovolumetric replacement, conservation of original grain boundaries, and retention of the parent phase's shape and size. These conditions may not always be met in all dissolution-precipitation processes.
Additionally, the generation of pseudomorphic textures can be influenced by a range of factors, such as the rate of reaction, the nature of the parent and product phases, the solution chemistry, and physical conditions like temperature and pressure.
Therefore, while the interface-coupled dissolution-precipitation mechanism often leads to a pseudomorphic replacement, it does not necessarily always lead to the generation of pseudomorphic textures. There can be cases where this mechanism could result in non-pseudomorphic replacement, particularly if conditions are not conducive to maintaining the original form of the parent phase during the replacement process.
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So far I have found partial data, not a global coverage.
Data by station or simply a raster image would be great, as I need to calculate the average wind speed and precipitation by subnational region (for which I have a shapefile with the administrative boundaries).
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merci Mohamed !
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Hi ResearchGate community,
I am interested in using chemical flocculation to concentrate water samples for eDNA analysis. This is basically to avoid having to filter water.
I have come across interesting papers on this subject, however, people use chemical flocculation for the precipitation of entire cells (bacterial communities). I am wondering if this method can also work when we are dealing with environmental samples (cells + mitochondria + free floating extracellular DNA + mucous + fecal matter, etc). I would appreciate if anyone with experience with this could comment. I am interested in knowing what is the % recovery of this method.
Thanks
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Nucleic acids, lipid, and colloidal particulate material can be selectively flocculated from a yeast cell homogenate by the cationic polymer polyethyleneimine (PEI). Flocculation can occur from a crude homogenate, a homogenate clarified centrifugally, or by the prior use of sodium tetraborate (borax).
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Hello eveyone,
I'm trying to conjugate azide-MMAE compound to a protein. The azide-containg group is soluble in DMSO. The problem is when i combine all the ingridients for the reaction i get precipitation and only the protein remains (checked in MS analysis). My theory is that the amount of DMSO is so little in the total amount of the reaction that the organic compound is not soluble anymore. How do i prevent the precipitation of azide-MMAE, while also not denaturing the protein?
My reaction is as follows (for 1 ml, 37C, 550 rpm, 2hr):
50 ul of 50mM THPTA
25 ul of 20mM CuSO4
160 ul of 31.195uM protein
20 ul of 5mM azide-MMAE (stock is 50mM and diluted with PBS)
50 ul of 100mM ascorbic acid
and PBS to 1 ml
I would appreciate any assistance on this matter.
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One strategy may be putting a hydrophilic spacer that increases the azide-MMAE compound's solubility in aqueous media for successful click chemistry. There are many options...
Refolding after bioconjugation may be the second strategy...
Third, non-ionic, non-denaturing mild detergent may also be helpful to increase solubility for MMAE. But I am not sure if this alters the conjugation...
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I have tried to modify gelatin with methacrylic anhydride (MA). However, when MA was added into gelatin PBS solution, it will form milky emulsion and a kind of precipitation. after dialysis, the precipitation can be reduced in some extent, but still exists.
can I ask whether this is a normal procedure or what should I do to avoid the precipitation?
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Just a follow up on this question. I've had the same issue now and wanted to ask: Did it affect down-stream applications? Did you remove the precipitate by centrifugation? Or did you simply start over?
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Hi, I have monthly precipitation and monthly temperature (not classified as minimum and maximum). How can I calculate SPEI index using Rstudio? I have also additional inputs like year, months and latitude of the location where I am conducting research.
Thank you!
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Thank you very much, appreciated!
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Hello all,
I recently started to use peptides for cellular studies. Unfortunately, when I was designing the peptides I did not have a FITC tag to them (the peptide was synthesized by an external company). The peptides still have an -NH2 terminal that I can react with FITC-NHS pretty easily. But due to the small size I would not be able to isolate the peptide from unreacted/hydrolyzed FITC-NHS by MW cutoff as I would for proteins.
The peptides are not very cheap so I would seek alternatives than purchasing more tagged peptides. While I know I could purify it by HPLC followed by concentration / lyophilization, it's adding a lot of procedures to the pipeline and I'm considering if there could be alternatives. And so, I'm wondering if peptides could be precipitated by TCA/acetone precipitation similar to proteins?
While I believe the precipitation is dependent on the peptide structure, I used one of our peptides and tried it out - the precipitation worked (I saw visual white fluffs) and the peptide absorbance curve showed peaks at 214/280. The curve looked identical to the peptide solution (unprecipitated) but with a lower absorbance unit (22 AU compared to 5 AU post-precipitation).
My question is, is this way of isolating peptides legit? And if I used FITC-NHS, would FITC also be precipitated by any chance? Will the peptide lose stability / increase cytotoxicity during TCA exposure? I am not using the peptide for functional studies, just trying to visualize cellular internalization.
- If this way makes no sense I will refer to other methods. Thanks for any suggestions.
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Success depends a little on the hydrophobicity of your peptide.
I'd try dry Et2O first, esp. if the volume of reaction is small, so all water gets can dissolve in the ether. If it should not work, remove the ether and try isopropanol or ethanol: Begin with small amounts, cool and centrifuge, then increase the alcohol concentration until your labeled peptide precipitates. Fluorescein will precipitate sooner or later, too (pH dependent).
If you try Adam's suggestion, keep all fractions until you know that the operation was successful. For concentrating the peptide, use precipitation as above. There is a high chance that the fluorescein gets trapped on the column and is moving *very* slowly (which is in your favor).
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I would like to prepare a calcium carboxylate. The procedure is overbasing the carboxylic acid with excessive Ca(OH)2 than bubbling CO2 through it to precipitate CaCO3. Can I just throw some pieces of dry ice into the mixture? Gas cylinder is hard to handle.
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Could you not put he solid CO2 into a container and bubble the gas through the calcium hydroxide solution?
Throwing the solid CO2 into the solution may simply freeze it
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i would like to download Daily temperature data and daily precipitation data ERA5 reanalysis data, Anyone with a simple python code to help me kindly?
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Well, first, you'll need to register for an account on the Copernicus Climate Data Store (CDS) website: https://cds.climate.copernicus.eu/
After registering, follow the instructions to install the CDS API key on your computer: https://cds.climate.copernicus.eu/api-how-to
Next, install the CDS API client for Python by running the following command in your terminal or command prompt:
pip install cdsapi
Now, you can use the following Python script to download daily temperature and precipitation data. Make sure to replace the start_date, end_date, and output_file variables with your desired values.
import cdsapi
start_date = "2021-01-01"
end_date = "2021-01-31"
output_file = "era5_daily_temperature_precipitation.nc"
c = cdsapi.Client()
c.retrieve(
"reanalysis-era5-single-levels",
{
"product_type": "reanalysis",
"variable": ["2m_temperature", "total_precipitation"],
"year": [start_date[:4], end_date[:4]],
"month": [start_date[5:7], end_date[5:7]],
"day": ["01", "02", "03", "04", "05", "06", "07", "08", "09", "10", "11", "12", "13", "14", "15", "16", "17", "18", "19", "20", "21", "22", "23", "24", "25", "26", "27", "28", "29", "30", "31"],
"time": ["00:00"],
"format": "netcdf",
},
output_file,
)
This script will download daily temperature (2m_temperature) and precipitation (total_precipitation) data in NetCDF format for the specified date range. You can then use libraries like xarray or netCDF4 to read and analyze the data in Python.
Keep in mind that downloading large datasets may take some time, so be patient while the script runs. If you need data for a longer period or at a higher temporal resolution, you can adjust the parameters accordingly.
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An additional column comes with the data as follows:
- a number code of 5, 6, 7, or 8 for wind speed
- a letter code of F, E, I for precipitations (rain)
Many thanks in advance for letting me know what it means!
Kind regards,
Cesar on behalf of the Magnetics project team
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Thank you Geoffrey, it is much appreciated! césar
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I'm trying to assess protein interaction in a chelating sepharose column with nickel. When I added the first protein and collected the flow-through was everything okay. When I added the second protein, it almost didn't get through the column. Looking at it, it seems that my first protein is indeed binding to nickel but it clogs up the column since we can see the red colour only in the upper part of the column. Using 10 mM, 50 mM and 100 mM of imidazole I have a flow of almost 1 mL/h. When I add 500 mM of imidazole the flow gets faster and all protein comes out. This protein has a propensity to precipitate. I'm using 20 mM Tris 500 mM NaCl 10% glycerol as buffer. I'm wondering why this is happening and what should I do? Add a reducing agent? Is possible that my protein is forming some sort of complex with nickel?? Help
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You can try using batch method instead of column purification. Briefly, you take Ni-NTA-sepharose and mix it with your protein in a probe, incubate, and then do washing and elution by exchanging the buffer above the resin. It requires more effort than using column, but may work in your case.
Regards
Tomasz
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Hello erveryone.
I want to try different global and temperature models and their data that want time, longitude, latitude, and height as inputs. I already tried different models for zenith tropospheric delay and precipitable water vapor, such as the Gtrop, Gpt3, Gpt2w, and Hgpt2 models. But I want something that looks like these models, which give me pressure and temperature in output.
Is there another model other than the ones mentioned that I can use?
It's important to me that you try more models.
Thanks a lot.
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Greetings... Modern satellite visuals may help you with that if you can obtain them and analyze their climate data according to the climate bands.. Good luck.
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Now I want to access the two future simulations of temperature and precipitation in the CMIP6 dataset (in ssp126, ssp245, ssp370, ssp585 senario). It is only necessary to obtain the data for the Chinese region. Finally it will be carried out to calculate the annual average of rainfall and temperature for each province according to the regional boundaries of the Chinese provinces. How do I implement it?
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If you can understand Chinese, you can read one of my blogs: https://zhuanlan.zhihu.com/p/424218019. Simply, it is actually using CDO to cut .nc file by .shp files.
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I'm trying to start modeling asphaltene precipitation. Since I read studies related to asphaltene precipitation, I have found that modeling with PC-SAFT equation of state is most appropriate.
However, I don't have any software or MATLAB code that can model VLE and LLE for the system with multicomponents.
Would you please recommend me some free software or code for PC-SAFT EOS?
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You are looking for a graphical user interface? Unfortunately most implementations expect the user to use them from code.
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Why do western slopes of Western Ghats receive orographic rainfall and precipitation different from other parts of the water cycle?
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Western Ghats receive more rainfall than the Eastern Ghats because (i) Western Ghats receive rainfall from the Arabian Sea monsoon winds. As these winds blow over warm oceans, they bring abundant moisture. (ii) The Ghats do not allow the winds to cross over without shedding their moisture on the Western slopes. The Western Ghats receive rainfall through Mountain type of precipitation. The winds from the Arabian Sea climb the slopes of the Western Ghats from 900-1200 m. Soon, they become cool, and as a result, the windward side of the Western Ghats receives very heavy rainfall ranging between 250 cm and 400 cm. Due to orographic rainfall, the western side of the Western Ghats receives heavy rainfall, more than 250cm rainfall per year. The Western Ghats block rain-bearing winds which cause rainfall on the western slopes. Whereas South-west monsoon moves parallel to the Eastern Ghats, which cause less rainfall because in the Eastern Ghats unable to block moisture-laden winds. Winds from the Arabian Sea ascend from 900 to 1200 m up the slopes of the Western Ghats. They soon become cool and as a result, very heavy rainfall ranging from 250 cm to 400 cm occurs on the windward side of the Western Ghats. These winds descend and get heated up after crossing the Western Ghats. The high montage forest ecosystems influence the Indian monsoon weather pattern. The Ghats act as a key barrier, intercepting the rain-laden monsoon winds that sweep in from the south-west during late summer. In orographic rainfall, the windward slope of the mountain receives maximum rain and the leeward slope remains generally drier and is known as the rain shadow area.
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Why does orographic type of rainfall occur in Indian plains and peninsular region and difference between precipitation and rainfall?
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Orographic rainfall happens in tall mountains as the mountains act as a barrier for the clouds to travel from one place to other. Masses of moist air rise along on one side of the mountain, get cooled down due to condensation and form clouds.Winds coming from lakes or seas are moisture-laden. They are obstructed by the high mountain ranges coming in their way. They start going upwards along the slope of the mountains, the temperature of these winds drop and condensation occurs and rainfall takes place. The warm and moist air from the Arabian Sea is blocked by the Western Ghats and gets lifted over mountain ranges. As the air rises and cools, orographic clouds are formed resulting in precipitation and dry winds to blow over Peninsular India. Orographic rainfall happens in tall mountains as the mountains act as a barrier for the clouds to travel from one place to other. Masses of moist air rise along on one side of the mountain, get cooled down due to condensation and form clouds.Orographic rainfall is precipitation produced when the mountains of uplands act as barriers to airflow, forcing the air to rise and the moist air moving upslope coo down by producing clouds and precipitation. Orographic rainfall occurs in most of the world: Orographic rainfall occurs because of the obstruction of moisture laden clouds by the mountains and areas of high altitudes. These clouds are generally blown by the winds.Orographic rainfall occurs in most of the world: Orographic rainfall occurs because of the obstruction of moisture laden clouds by the mountains and areas of high altitudes. These clouds are generally blown by the winds.The difference between Rain and Precipitation is rain falls as water droplets, whereas precipitation can fall as snow, water, etc. Precipitation can take the form of liquid and frozen water or ice, whereas rain only happens when the precipitation is in the form of water.
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I have been following the paper https://doi.org/10.1039/C7NR06732A to synthesize them, but I could not synthesize microgels with a Polydispersity Index of less than 0.01. My microgels have a Polydispersity Index of 0.05 and an average hydrodynamic diameter of 750 nm, and zeta potential is also less, -2 mV. I first dissolved 0.25 g NIPAM and 0.009 g BIS in 20 ml of DI water under continuous stirring at 150 rpm in a nitrogen gas atmosphere at 70-degree temperature. After 30 minutes, I added 0.02 g KPS dissolved in 1 ml of DI water to the solution and let the reaction continue for 6 hours. Then it was cooled to room temperature and continuously stirred for 12 hours. Finally, I found that some portions of the polymer precipitated and some amounts dispersed in DI water.
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Practice and luck.
The authors may have made ten different batches with only one having a PDI less than 0.01.
Years ago, the PhD group I was in had many projects concerned with making microgels. Most people struggled to get good PDI values at first. It came with practice.
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Hello,
While concentrating my GST-tagged protein in a Merck 10kDa cutoff Centricon , the protein appears to be aggregating/precipitating. As is understandable when there is turbidity/whitish appearance in the column . Just simple mixing is just not helping.There is huge protein loss. The buffer I am using for buffer exchange has 50mM Tris-Cl (ph8) and 50mM NaCl. And I have kept the NaCl conc in lysis and washing buffer(for GST purification) at 200mM.
Am I doing the process wrong?
Any suggestions would be appreciated!
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I am no expert in this apporach. But how do you do the elution? Do you cut off the GST tag?
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Yesterday, I prepared the minimum medium Yesterday, I prepared the minimum liquid medium for the screening of bacteria that have the ability to degrade naphthol and use it as a single carbon source which is composed of:
1,0 g K2HPO4-2H2O
1,0 g KH2PO4
5 g NaCl
0,3 g (NH4)2SO4
0,3 g MgSO4-7H2O
20 mg CaCl2
5,0 g ZnSO4
2,3 g FeCl3
5,0 g MnSO4
1,0 g (NH4)6Mo7O24
This is the composition that suits my bacteria, I was inspired by this article: https://sci-hub.se/10.1016/j.jhazmat.2010.06.101
Biodegradation of naphthalene by strain Bacillus fusiformis (BFN)
but the problem is that after autoclaving, there was the precipitation of the components at the bottom of the bottle .
can I add before autoclaving a solution of cacl2 so that there is no precipitation? and how much can I add of this solution in 1 liter of minimum media ?
Please give me all the tips I can do or avoid to succeed in this medium
Than you .
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Dear Manel Moumene,
Try to prepare the medium by fractioning the solutions, one way in this particular case would be to prepare four solutions:
1. Phosphate salts (adjust the pH of this solution),
2. NaCl, Mg, Ca and sulfate ammonium,
3. Zn, Fe, Mn and Mo
4. carbon source solution.
Sterilize separately and collect them all at room temperature. Storing the reconstituted medium in the refrigerator can generate precipitation, so I do not recommend preparing large volumes.
Good luck
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Indicators like precipitation intensity, duration, geology, etc.
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first,you have measure the rain precipitation and the runoff or seeps into the groundwater, and then you can model the ralation between them.
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I would like to synthesize SnO2 nanoparticles from SnCl4. Having problem with ppt washing. Precipitates washing away during cleaning. Please help with expert opinion or suggestions.
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What is your washing media? Water? Try using some organic solvent like alcohol. your unreacted reactant may be soluble in that. Do check if your ppt is also soluble or not?
Also after drying do check the phase purity by XRD or any other analytical method. Hope it works..
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For my research purpose i have prepared polyquaternium 7 with 41 - 45 % solids and viscosity in the range of 2000 - 45000 using 70 % acrylamide and 30 mol % DADMAC
polymer solution itself is clear and transparent but when i mixed it with CAPB and SLES solution it precipitated and gives haziness to the solution
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Dear friend Tushar Deore
In your case, the addition of polyquaternium-7 can cause haze or precipitation in the formulation.
There are several possible reasons why polyquaternium-7 may be causing haze or precipitation in your SLES-based formulation:
  1. Incompatibility with other ingredients: Polyquaternium-7 may be incompatible with other ingredients in your formulation, particularly anionic surfactants like SLES. This can cause the polymer to become insoluble and precipitate out of the solution.
  2. pH sensitivity: Polyquaternium-7 is sensitive to pH and may precipitate out of solution if the pH is not in the appropriate range. In particular, it may become insoluble at lower pH values.
  3. Temperature sensitivity: Polyquaternium-7 can also be sensitive to temperature and may become insoluble or precipitate out of solution if the temperature is not appropriate.
  4. Concentration: Polyquaternium-7 is a high-molecular-weight polymer, and at high concentrations, it may become more difficult to solubilize in water-based systems.
To address the issue of haze or precipitation in your formulation, you may want to consider adjusting the pH of your formulation, reducing the concentration of polyquaternium-7, or using a different polymer that is more compatible with your surfactant system. You may also want to consult with a formulating expert to help identify the cause of the issue and develop a solution.
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I am trying to purify a heterologous protein with His tag in yeast but I am facing issues with binding my protein to Ni-NTA beads. Please suggest some methods to purify my protein of interest.
These are the conditions I have followed
My protein of interest was precipitated from Pichia X-33 cells culture supernatant (400 ml) on day 4 using 60% of ammonium sulphate. The precipitated protein pellet was dissolved in 6 ml of buffer (Tris-20 mM, NaCl-500 mM, pH-8). 6ml of dissolved protein was dialyzed in 3 cycles of dialysis (Buffer: Tris-20 mM, NaCl-500 mM, pH-8). Dialyzed protein was purified using Ni-NTA agarose beads. My protein PI:6. I have used the same dialysis buffer with 20 mM and 40 mM imidazole for washing.100 and 300 mM imidazole for elution. My protein is not binding to Ni-NTA agarose beads. I have tried at pH:7.4 also. In all the cases it's in flowthrough.
I have attached the gel image also.
.
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You need to reduce the salt concentration.. 500 mM is very high.
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In the adsorption removal of heavy metals, we typically focus on kinetics, thermodynamics, and isotherm. What about the studies that are commonly used in the precipitation technique?
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In the precipitation technique for removing heavy metals, some of the commonly studied aspects include:
  1. pH: The pH of the solution plays a crucial role in the precipitation of heavy metals. The solubility of the metal ions is affected by the pH of the solution. Hence, the pH needs to be optimized to achieve maximum precipitation efficiency.
  2. Precipitant concentration: The concentration of the precipitant used in the precipitation technique plays a significant role in determining the efficiency of the process. The concentration needs to be optimized to achieve maximum precipitation efficiency.
  3. Reaction time: The reaction time of the precipitation process is another important parameter that needs to be optimized. The reaction time determines the extent of the precipitation process.
  4. Temperature: Temperature can also affect the precipitation of heavy metals. The solubility of the metal ions decreases with an increase in temperature, hence, higher temperature can lead to better precipitation efficiency.
  5. Mixing speed/agitation: Adequate mixing speed or agitation is necessary to ensure that the precipitant and metal ions are uniformly distributed in the solution. This helps to ensure that the precipitation process is efficient.
  6. Co-precipitation and Post-precipitation treatment: In some cases, unwanted impurities may co-precipitate with the target heavy metals. Also, the precipitate formed may require further treatment to improve its quality, stability, and recyclability. Hence, co-precipitation and post-precipitation treatment are important aspects of the precipitation technique.
Overall, the optimization of these parameters can improve the efficiency of the precipitation technique for the removal of heavy metals.
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I am using RUSLE model for determining erosion in watersheds of Nepal. I want to know the level of erosion due to precipitation in monsoon. So can I use precipitation of only monsoon months (June- September) in the model instead of average annual precipitation ?
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who can support me on the revised R factor estimation in the RUSLE
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How to downloads Global Precipitation Measurement data in R????. Your help will be appreciated
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To download Global Precipitation Measurement (GPM) data in R, you can use the R package rGPM. Here are the steps to follow:
Install the rGPM package by running the following code in R:
install.packages("rGPM")
Load the rGPM package by running:
library(rGPM)
Download the GPM data using the downloadGPM() function. This function takes several parameters, including the date range and geographic coordinates of the area you want to download. For example, to download GPM data for the month of January 2022 for the area between 30 and 35 degrees north latitude and 80 and 85 degrees east longitude, you can run the following code:
downloadGPM(start_time = "2022-01-01", end_time = "2022-01-31",
bbox = c(30, 80, 35, 85), outdir = "/path/to/output/directory")
This will download the GPM data for the specified time period and location and save it to the specified output directory.
Note: You will need to sign up for a NASA Earthdata account and obtain an API key to use the rGPM package. You can do this by following the instructions provided in the rGPM package documentation.
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I found a discrepancy in ERA5-Land precipitation product. The monthly data is in theory the daily mean precipitation in meters per day. The problem is that when computing this from the hourly data the result is not the same value. I computed this for several months and grid-points, and I found in each case a discrepancy. Does anybody know why this discrepancy exists? Is there a problem/issue with the ERA5-Land product? If that is the case, which product is "correct"?
There another person got the same discrepancy, then in the comments, another researcher got also the mismatch in the precipitation values.
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Hi,
I use the ERA5-Land product and compare the hourly data with the monthly data of the same product ERA5-Land. This is a reanalysis, there is no forecast. I downloaded the data (monthly and hourly) two weeks ago. In theory, these datasets must be equivalent since one is the monthly mean of the other. See: https://essd.copernicus.org/articles/13/4349/2021/
Best,
Santiago
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I am trying to do bias correction for rainfall data using the ‘qmap’ package in R.
My daily observed data is collected from 1981 to 2014 at the point (station) scale. To downscale the future data, I extracted the variable for corresponding locations from GCMs, including historical and future period (1981-2100).
The observed and GCMs data are detected the relationship and estimate the parameters of downscaling future data. But when I do that using qmap package, the results are poor. The output data is aggregated to monthly scale, and evaluated the performance of different GCMs with root mean squared error (RMSE) and correlation coefficient (r). From the results, I found that the bias correction even decreased the r. Additionally, I also provide the boxplot for month and annual precipitation. The above results are based on the fitQmapRQUANT method in the ‘qmap’ package. I also tried to other methods (fitQmapDIST, fitQmapPTF, fitQmapQUANT, and fitQmapSSPLIN), however, the results are still poor.
Does anyone get such results or I am doing it in the wrong way? How can I apply "qmap" to downscale daily precipitation data with my observed data?
Thanks in advance
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If possible applie Quantile Mapping in daily value of precipitation, fir extreme value. For mean regimen use delta method
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I am trying to grow Pichia pastoris X33 in the basal salts medium provided by Invitrogen. However, on adjusting the pH to ~ 4.50-5.00 using ammonium hydroxide and addition of PTM trace salts, a heavy precipitation in the media is observed. Why is this so and how can this be avoided?
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Fateme Frootan if that didn't work with you then you can modify your chemical in defined media by using the model described in;
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When I try to prepare 1M MgCl2 solution using anhydrous magnesium chloride (AR), the solution will exotherm (obviously) then produce some white precipitates (supposedly Mg(OH)2), followed by some black precipitates which cannot be dissolved after adding HCl. I would like to know what these black precipitates are, could they be MgCO3, or something else? Also, the water used for dissolution is the Ultrapure water.
Thank you for your answer :-D
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The black precipitation is actually a burned particle. The anhydrous magnesium chloride is hygroscopic. Use the MgCl2.6H2O is more suitable for molecular biology.
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Hi there,
are there ways to recover back the purified protein that was precipitated because of too much centrifugation? Since I forgot to shake my protein sample which was in a concentrator during the pause of centrifugation, it eventually precipitated and the protein concentration was very low. This protein was already purified by several columns.
Thanks.
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Thanks
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i am try to synthesize the schiff base compound from aniline derivatives and vanillin use ethanol as a solvent and i am try first without catalyst no precipitate form then i use glacial acetic acid also no precipitate form but when i use sodium hydroxide as catalyst the yellow -white precipitate form with deffer melting point than reactant but when i mentoring by TLC the spot appear in vanillin and the elemental analysis of C,H,N give result deffer from my product can you help me ?
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Qasim Qayyum Kashif ok thank you
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we have a process to precipitate CaCO3 we need to control product particle size
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Precipitated calcium carbonate (PCC) and nano calcium carbonate (nano CaCO3) are both forms of calcium carbonate, but they are not the same thing.
PCC is typically produced by the reaction of calcium hydroxide and carbon dioxide, resulting in the precipitation of calcium carbonate crystals. These crystals are typically in the micron-sized range, meaning they are much larger than nano-sized particles.
Nano calcium carbonate, on the other hand, is characterized by its small particle size, typically less than 100 nanometers. Nano CaCO3 can be produced by various methods, such as precipitation, sol-gel, and gas-phase synthesis.
Therefore, PCC is not considered to be nano calcium carbonate, although it may be possible to produce nano-sized PCC particles using specialized techniques.
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I am looking for observed rainfall data in different regions, such as the USA or Europe or Africa or China.
I will be thankful for any kind of help.
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I usually go to Google and search for weather data for the location of interest. I can usually find the monthly values for max and min temperatures, precipitation depth, and number of wet days. I then enter that information into our online weather generator (https://forest.Moscow fst.wsu.edu) and generate a hundred years or so of daily stochastic climate to drive our erosion models. For example, here is the information for Cairo: https://www.holiday-weather.com/cairo/averages/. I can send you more information on this method if you are interested.
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I've extracted PHA in chloroform using soxchlet extraction method at 65 degree celsius and tried precipitating the dissoloved polymer in cold methanol (70%), but could'nt see any precipitation. I've tried this method many times but not able to see the polymer. Is there a problem with my extraction method or the produced polymer is so low in concentration that I'm not able to get the precipitation.
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Keep the Ice cold methanol precipitant (with PHA & chloroform) inside the freezer for 10 days. You will be able to observe visible precipitations!
FTIR and RAMAN to get data
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Hi,
i am starting my master thesis And I am doing polymer synthesis following by precipitation method (dissolution in solvent, non solvent precipitation, centrifugation) repeated 2-3 times. I have some impurities in my NMR analysis.
So I want to know if precipitation method in cold ethyl ether is enough to purify a polymer chain ? if yes, it the best procedure to do a good purification through This method?
Example: addition drop by drop is important ? Stirring fast also ?
Is it better than soxhlet extraction ?
Another suestion regarding the purity of final product. Is GPC can confirm the formation of product ? How can I confirm clearly that the reaction work and the product is formed (in complement with NMR) ?
thanks
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Hello Saya Bird,
the purification depends on the polymer and the side products/impurities, which you want to remove.
Additional purification methods might be following:
Dialysis; I used this to remove some salts, which could leave the polymer solution through the membrane of the dialysis tube, whereas the polymer remained in the tube.
Fractionated precipitation: I used this to separate blockcopolymers from homopolymers or different moecular weight fractions of the same polymer from each other. You add a non solvent to a polymer solution and the less soluble polymer (depending on their chemistry in the case of block copolymer) or the polymer with the higher molecular weight (in the case of different molecular weights) precipitates first as a polymer gel.
There are also methods, that require more elaborate equipment, like preparative GPC or separation by LCCC.
If your separation does not remove the impurities, maybe add the solvent slower (drop by drop, as you mentioned) and use another solvent (or non-solvent). Maybe you polymer precipitates so easily, that the impurities are trapped in your solid polymer. If the polymer precipitates slower the impurities may stay dissolved (similar to the case of fractionated precipitation).
The confirmation of your product also depends on the polymer. Maybe some groups on your monomer were changed by the polymerization, which could be detected by IR-spectroscopy.
For the chracterization of polyurethanes (as an example), remaining isocyanate groups can be titrated.
If you use a new method to obtain a known polymer, you can also compare it's properties with literature values (i.e. the glass transition temperature via DSC) to get a hint if the reaction might have worked.
There are plenty of complex and simple methods to characterize a polymer, but it depends on your polymer if you can use them.
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Hello Dear scientific community, I want to apply AI methods for rainfall-runoff prediction. However, I am still stuck in the database construction for model input. I have selected the precipitation and temperature factors, I have the data of vegetation cover and soil type but don't know how to use it as input.
  • Is it possible to enter different inputs with different column numbers, for example, is it possible to integrate the LULC and soil type with precipitation and temperature.....?
  • If someone is familiar with this subject, Please advise me
Thank you,
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Muhammad Saadullah Thank you so much for responding to my question. The information you explained to me was useful.
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  1. I am trying to increase the media’s calcium content to provoke microvesicle release but everytime I try to add it into the media it precipitates out of solution. I’ve tried using stock solutions and adding them slowly in to the media (serum free) and all I get is precipitation. Any help would be greatly appreciated.
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Hi,
I'm currently trying to do the same thing and I also get precipitation after a few days or immediately after thawing, and it gets worse with heating. Did anyone find a solution?