Science topic

Paleobiology - Science topic

Paleobiology or palaeobiology is a growing and comparatively new discipline which combines the methods and findings of the natural science biology with the methods and findings of the earth science paleontology. It is occasionally referred to as "geobiology".
Questions related to Paleobiology
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I'm now concentrating on molecular phylogeny. To create a time tree using BEAST, I need fossil data. I collected some pieces of fossils. However, they were discovered right on the surface, in dirts. I can't find the exact strutum, what I need, from geological map, owing to a complex structure in that area. Who knows what to do then?
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ni-hao
the wiser thing could be to collaborate with a palaeontologist. A fossil found ex-situ, i.e. outside the rock in which it was formed, can be tricky. Fossil can be reworked, i.e. become a fossil in a geological layer, which is subsequently eroded, with the fossil being redeposited in a younger layer. Geological maps are wonderful tools, but as any human design can be erroneous.
regards
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Paleontologists and biologists work as separate teams, however if they try to work together they can solve a lot of problems related to these two fields. Please let us know your opinion concerning this subject and how to fill this gap.
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Thanks for introducing this interesting topic!
Species is the building block in the systematics of Biology and Paleontology. So the’ gap’ between the two branches may be minimized with commonness in the facets of its definition. Paleontological species (with ambit spanning all past time planes other than the Recent) are morphospecies erected exclusively on hard part morphology that exhibits variations, and differs from other ‘look-alike’ morphospecies. The characteristic aspects of morphospecies are its stratigraphic occurrence and involvement in the changes of morphological features with time (cf. organic evolution and evolutionary lineage), save life activity. Paleontological species has the quality to be a phylogenetic species. On the other hand, the essential parameters of a biological species include sexual reproduction, interbreeding and reproductive isolation which are witnessed in ‘Recent’ organisms. Gene flow within the community is the most distinctive character of a biological species, which however, cannot document organic evolution. ‘Reproductive isolation’ due to geographical, behavioral or genetic differences is difficult to establish in fossil communities; moreover, it is difficult to adjudge if interbreeding of different fossil communities of a species reproduced fertile offspring.
Despite these differences, there are common areas that are to be explored to bridge the gap.
1. Extant species contains distinctive as well as common aspects of both paleontological and biological species and it records physiological and anatomical changes during the span of its geologic age. The changes need to be interpreted by both teams in terms of environmental, ecological, climatic and evolution to arrive at a common definition of species.
2. Fossilized dimorphic/trimorphic forms, conjoined (plastogamic) forms , adult-juvenile association in certain extinct species help in the recovery of life cycle with attendant sexual reproduction and gene flow through interbreeding. Such specimens though rare can be of joint interest; advanced techniques of DNA, RNA can be performed to know ‘blood relation’ between ‘partners’ and ‘offspring’. The will help in genetic classification of a species, which is the aim of both groups.
3. Fossil forms containing signatures of sexual reproduction in their hard parts should be treated on par with biological species, and these may be explored for genetic species based systematics.
best wishes,
Sanjay K. Mukhopadhyay
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Dear colleagues,
There is already a number of threads on predatory journals on Research Gate but not a specific one for the domain of Geology and Earth Sciences. So I thought it may be a good idea to start one. I'd like you to share here your experiences with predatory publishers so we make sure you and your colleagues around you know about this bad behavior which is very harmful for science.
My mailbox is slowly getting drowned by emails of predatory publishers and this makes me really angry. So today I will report the invitation I got from medwin publishers, who are notoriously predatory so this is definitely not their first feat. but I was invited to contribute to one of their new Journals.
To my opinion, Paleontology, in particular invertebrate paleontology, is unfortunately a field that struggles a bit nowadays with respect to the number of academics in position. The last thing that it needs is a journal that does not meet the scientific standards. Instead of publishing bad papers and books with these flaky editors, there has been two great recent initiatives to offer the possibility for open-access, with a respectable review system, and free for authors: PCI paleontology and the Journal of Cephalopod Palaeontology, while the excellent Palaeontologia Electronica remains more active than ever. Let's promote the good journals such as the three above that deserve it.
Links on Medwin publishers:
While it is of course not easy to clearly identify predatory publishers and journals, it could be a good occasion here to report any journal in the domain of Earth Sciences that has been reported as notoriously "predatory".
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Dear Nicolas
Raising awareness and having a discussion on predatory journals and alike (depending on the definition) is a good thing, but I'm not sure whether RG is the best place for naming, shaming and listing.
Yet, I’ll share some thoughts and practices that pertain directly or indirectly to this matter:
When I receive an ‘invitation’ from a predatory journal (or should we say anti-scientific journal?), I immediately mark the sender in my spam filter. With a bit of experience it takes about 1/10 of a second to recognize such a journal. I currently receive just a few invitations per week and this was much more in the past, so I assume it helps.
Occasionally I check Beall’s list https://beallslist.net/ when I come across a published paper or publisher of unknown reputation to me. This is not full proof, but at least provides some information to consider.
For the field of paleontology, I occasionally browse through the excellent journal list of Kenneth De Baets in order to find a suitable journal to publish. https://www.gzn.nat.fau.eu/palaeontologie/team/wissenschaftler/de-baets/journals-for-paleontological-research/
If the name of a journal in the field of paleontology is not on this list, it may be a good indication of an anti-scientific journal. This list is particularly useful to early career scientists in the field, since it contains also information on metrics, like impact factors, and that is considered very important by our administrators and funding agencies (but rather unscientific – other discussion).
I once wrote a critical comment in the newsletter of The Micropalaeontological Society (TMS) on a specific new journal in the field of paleontology by a predatory publisher and called for a reaction by editorial board members including the Editor-in-Chief that were also (esteemed) TMS members (see pdf for details). Perhaps surprisingly, this reaction never came. None of the editors took a stand. Perhaps some or most did not even know they were listed as editor. On the positive side: the journal was terminated after some years for lack of submissions.
This brings me to a core problem with predator journals: as long as established scientists fall into the trap of being ‘honored’ by becoming an editorial board member we exacerbate the problem of predatory/anti-scientific journals.
I planned to keep this reply short – and utterly failed. I’m looking forward to seeing more responses.
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The similar wood, similar cones or epimatium, the similar leaves, the similar pollen. Why are not Glossopteridales, Umkomasiales, Pentaxylales or Cyatoniales included in Araucariales, Cordaitales and Ginkgoales? 
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No, Pentaxylales is totally different group, with a very typical or very specialized morphological as well as anatomical characters, which are not found in any group of fossil plants. It is also sometimes called or referred as 'Synthetic Group'.While other groups as you have mentioned, cannot too be clubbed into each other as each and every group has/have their characters of their own, which seperates them from each other. Birbal Sahni Institute of Palaeosciences, Lucknow, India;is the most apt, best and premier center with the largest data base (best library, best museum) in the world. I am very confident that your problem can be resolved at BSIP.
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Body size (total length or body mass) estimates, derived from linear measurements of skeletal elements (e. g. skull length, molar length, long bone diameter), are commonly used for paleobiological studies.
There is a trend to use Reduced Major Axis (RMA), instead of Ordinary Least Squares (OLS), due to the asumption of error distributed betweeen both the independent and dependent variable in RMA, instead of being considered only for the dependent variable as in OLS. However, some authors (e.g. Kilmen & Rodriguez, 2017) consider RMA has additional problems, and OLS can be used for allometry studies if the error of the independent variable can be ensured as low.
Please note that my question applies only to body size estimates derived from linear measurements. The choice might be different for other applications of linear regression.
Kilmer, J.T. and Rodríguez, R.L. (2017), Ordinary least squares regression is indicated for studies of allometry. J. Evol. Biol., 30: 4-12. doi:10.1111/jeb.12986
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Jorge -
I think you might research "errors
-in-variables" models which I think look at errors in the independent variables by making repeated measures. Not my area, but it sounds promising here.
Also, have you considered heteroscedasticity?
For regression of form y = y* + e:  
Cheers - Jim
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John Huntley and myself are currently guest-editing two volumes for Topics in Geobiology on the evolution and fossil record of parasitism and are having trouble finding a researcher to contribute a chapter on The Evolution and fossil record of insects as vectors and hosts for parasites. Insects are common hosts for various parasites and pathogens which in some cases can even cause characteristic diseases and pathologies in them. Would there be any (paleo)ecologists, paleontologist, parasitologists or evolutionary paleobiologist who might be able contribute such a chapter this year. We will sent it out for review in addition to reviewing it ourselves. Please sent me an private message or e-mail with a potential outline or potential contributors.
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Ken, what about George Poinar Jr.?
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Preferably if lives in Mexico or knows mexican specimens. I found several of them at "Sierra Huichola" (western Mexico) and I'm looking for someone to analyze them. You can see full catalogue at:
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As discussed recently on the Ichnology Facebook page, these are inorganically produced structures. The author of Palaeotrochis, Ebenezer Emmons, wanted to discover fossils of "Taconic" (latest pre-Cambrian) age, and in this case found pseudofossils. His collection was destroyed in the American Civil War. They are certainly worth studying as pseudofossils, and it would be interesting to read a new article about them; however, they are neither body fossils nor trace fossils. See:
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.. but not as size variation in identical dental formulae (as in several mammal species), but to differences in number of teeth...
I´m working with heterodontosaurids, a lineage in which several hypotheses of sexual dimorphism were made... but in this case, no examples of sexual dimorphism sustained by different dentitions in dinosaur lineages exists...  so I´m looking for examples in other lineages...
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Hola Marcos, como te va?
Los guanacos tienen diferente numero, porque las hembras no tienen caninos, no se si se da en otros camelidos.
Los caballos también tengo entendido, pero no estoy seguro
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In other words, does any other reptile group have similar teeth? or maybe some sort of mammal incisors that look similar?
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Thanks for your answers! I was trying to convince an amateur collector that a particular tooth was not that of a dinosaur, but a mammal incisor.
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   I have found a classification for the Brazil strain of Trypanosoma cruzi in two references: Brisse et al, 2000, who defines it as TcIIc (currently classified as TcIII) and Minning et al, 2011, who included it in the DTU TcI.
   Due to this divergence, I am wondering if anyone else has determined to which DTU Brazil strain belongs.
Thank you,
Gustavo
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The reason I stumbled on your post was b/c yesterday I was going through old papers on T. cruzi metabolism (1960's to 1990's) and was finding references to "Brazil" strain and I was checking it out myself. I'm sure that Minning et al's "Brazil" is the one I'm seeing in my references. Minning et al provides a reference for the strain, a 1982 article of S.C. Pan who describes it as a "low pathogenicity" strain and goes on to clone and grow it in culture. When he speaks of this strain he references three papers by himself, the oldest from the mid 1960s, so its my best guess as to when it was isolated. Thus, I have no doubt that Pan's "Brazil" is TcI b/c the evidence in Figure 3 in Minning et al is quite robust. The Brisse paper never actually analyzes "Brazil", it analyzes "Brazil NIH 1954" so I do not think it is a good idea to assume that they are one and the same. Also, I can't see the data for that experiment, so I can't determine how much I trust it, unlike in Minning where I do see the evidence. The good news is that in Brisse, the strain identities are listed as "available upon request" in the text, so if you are still not convinced you can contact the authors directly and learn the identity of "Brazil NIH 1954", which I'm guessing is a strain from Brazil isolated in 1954 and kept in some National Institutes of Health repository. Good luck!
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Does Anyone know if the presence of foramina within the longitudinal grooves on ungual claws is common in any type of dinosaurs? The mention of these foramina is rare in the literature (e.g. in a Theropod from France related to Allosaurus: Pérez-Moreno et al., 1993), but I have the doubt if it is that they are usually absent or that the authors do not bother to describe them. Thanks in advance!
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Interesting...check with rweems@yahoo.com...
Jon
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Hi, can anyone help me to identify this vertical trace fossil? I really appreciate it. Info: it was found in an Early Jurassic (Sinemurian-Pleinsbachian) marginal marine setting and it was located in siltstones. The first photo (a) corresponds to a cross-section view, whereas the second photo (b) is a lateral view. Scale is 2 mm.
Thank very much in advanced!
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This trace impression showing :
1 -Rate of sedimentation with respect to time.
2-In upper and lower part decreasing and increasing size of width of digging materials
That happens when change in facies. Basically this type of structure occurs in sandy shore zone of marine environment where .That fossil can be skolithos or glassifungites.
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35 years ago, when I was a young boy of 15 years, I could find my first really interesting vertebrate fossil in the garden of my parents house at Ochsenhausen near Biberach/Riß (Southwest-Germany). The stone, a broken furnace brick, with a fossil fish (Holostei, cf. Hypsocormus sp.; see photo!) derives from the area of Holzmaden/Ohmden ("Posidonienschiefer", "Fleins"; Lower Jurassic, Lias Epsilon II3). The total lengths of this fossil fish (with the damaged skull elements) amounts to nearly 40 centimeter.
Do you have an idea, to what taxon this fossil fish of prey belongs to? Please give me informations and/or pictures for comparison with my fossil object!
Thanks Volker
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Dear Volker,
Nice to know that you has found "Das Holzmadenbuch" because I was photocopying it to send a copy to you!  You have seen how magnificent those fishes look in the photographs in the Holzmadenbuch.  Still, I will send you copies of a few descriptions of other pachycormiforms that have been mentioned for Holzmaden, so that sometime, you should send me your post address in a message.  
With my best wishes. 
Gloria
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Recently I found a fragmentary fossil bone in the "Upper Freshwater Molasse" of Southwest Germany (Middle Miocene, Mammal Unit MN 5/6). I don't know, from what animal (probably from a lower vertebrate: fish, amphibian or reptile) this bone derives and also what kind of skeletal element it belongs to!? The maximum length of this fossil bone is ~ 5,5 cm, the max. "width" ~ 1,5 cm and the max. "height" ~ 2,5 cm! Do you have an idea? => Please give me informations and/or pictures of similar bones for comparison!
Best regards, Volker
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Dear Volker,
At first glance, your material reminds me to a dipnoan jaw bone. See the attached photos for comparison (the photos correspond to Cretaceous Argentinian specimens).
All the best,
Sole
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I have recovered this specimen from oligo/Miocene horizon, the type of associated fossils belong to fossil fish and may be belong to fish othilith?
Note: the scale is 5 mm using the square that contained the specimen.
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Dear Mohammed! This specimen looks like a small fish otolith, however I can not determine it. If so, You may contact with Werner Schwarzhans (https://www.researchgate.net/profile/Werner_Schwarzhans) or with Bettina Reichenbacher (https://www.researchgate.net/profile/Bettina_Reichenbacher).
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If anyone could point me in the right direction regarding the attached fossil it would be greatly appreciated. 
It dates between 250-350ka and from around Northern Africa.
Cheers
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Dear Mathew 
Seems to be this is  a Lumbar Vertebrae (L1 – L5 ). Supiror articular focet & focet for tubercle of rib are laterally  model . Transverse process have been damaged. You can check  most o f the  aves & some of reptile  families &  which one have better heart shape vertebral foremen.
Best 
Aravinda..!
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I have heard several authors and seen several reconstructions that have portrayed some ornithischians, particularly heterodontosaurids and basal ceratopsians, as omnivorous. I was wondering, is there any positive evidence in support of this hypothesis? That is, beyond "well its possible that they could have been omnivorous based on their anatomy and the fact that a lot of living herbivorous animals have been documented occasionally eating meat" and more along the lines that "this evidence suggests these animals were most likely including some amount of animal matter in their diet". The only evidence I have been able to find so far is Farke's mention of how heterodontosaurid canines do not vary with sex or sexual maturity.
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moreover, consider size and mrtabolic rate to hipotesize on omnivory... several authors relate the small size in ornithischian dinosaurs as an indirect evidence of omnivory, together with anatomically plesiomorphic dentition. This kind of conclusions is arribed in Heterodontosaurids (See Sereno 2012) such as Heterodontosaurus (Norman et al., 2011), Fruitadens (Butler et al., 2010, 2012), Manidens (Becerra et al., 2013, 2016) and you can also look for this kind of reference in papers of feeding behavior in oprnithischia of Norman and Weishampel. I don´t remember if this kind of feeding is mentioned in Eocursor, Lesothosaurus, and stormbergia, but you can search the papers by your oun.
Cheers!
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Does the Ampullariid snail Lanistes show indeterminate growth. I find there is very limited biological and ecological information available on this genus
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Hey Ranjeev,  Good question - and I bet that nobody really knows!  The problem arises that because of the often severe Ca limits to growth, the snails are probably constrained most of their short lives - so it might appear as indeterminate in a Ca-rich habitat, or determinate in a less Ca-rich environment.  Sorry that I cannot provide an easy answer - but that is the nature of the beast!  Good luck! 
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This is in the Paleobiology Database for the Maastrichtian of South Dakota.  I am trying to identify these mollusks from the Fox Hills near Boulder, Colorado.  
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May be Gyrostrea subtrigonalis (oyster). 
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A big one and a small one.
I hope Paleontologists can told me.
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Quarzitic geoda with crystals, may be also with agate rim at the margin, it has nothing to do with fossils.
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Curious on the functional role of shell carina in freshwater gastropods
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Dear Ranjeev,
That's a difficult question and there is no simple answer to it. Shell sculpture (as well as shape) can be both ecophenotypic and genetically fixed, depending on the environmental conditions and the presence or absence of competition and predation pressure.
For instance, in the Gyraulus species flock in Miocene Lake Steinheim the evolution of shape and sculpture is considered to reflect partly speciation and partly ecophenotypic variation (see Rasser 2013; attached).
In recent Melanopsis species of the Mediterranean, sculpture and shape are highly variable within single species, which makes species identification based on the shell alone sometimes almost impossible. Apparently, most of the morphological variability seems to be ecophenotypic (e.g. Glaubrecht 1993; Heller & Sivan 2002; attached). 
For another example, I suggest you also see Glaubrecht & Köhler (2004 and references therein; attached).
In summary, shell carination CAN indeed be a result of ecophenotypic plasticity but the difficult task is to prove it!
Best wishes,
thomas
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I have been calculating mechanical advantage of knees and ankles in extinct taxa in regards to locomotory efficiency.
I understand that MA is effort/load and in terms of my studies means that MA of 3rd class levers, the knee =  femur(E)/tibia(L) and in 2nd class levers =, the ankle = tibia(E)/pes(L).
However, I am getting results which are unusual for 3rd class levers in that they are consistently over 1.
Does this mean I am equating this wrong or that it shows that the knee is an inefficient lever in this scenario?
Thank you
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I assume that these are closed chain kinetics.  If the vertical ground reaction force is known and joint kinetics (moments) are known then you could calculate mechanical advantage (in sagittal plane) by calculating the moment arms using the joint moment divided by the vertical ground reaction force for each joint and compare moment arms between the joints.  I understand that this may not be experimental data, but this method should work with experimental data.
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This specimen found in the Badamu formation.
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I fail to see the spiral striae or the lateral furrows typical for Strigoceras on these photographs.
I am wondering if it could be Oxycerites species but those with stronger ribs are usually later than Bajocian. To my kowledge the Badamu Formation only goes up to middle Bajocian near Kerman (is this correct?) which makes it even less likely to be an Oxycerites.
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I am interesting in Paleozoic wildlife, specifically in the Silurian wildlife, in little animals. 
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Hi Victor,
While not my area of work, I read in this area as a hobby.  As a non-professional in paleontology, I would recommend Richard Fortey's book, Life. A natural history of the first four billion years of life on Earth. It is a fine book -- so well written -- and has as generous a section on Paleozoic (so, including Silurian) wildlife as any I have come across.
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How much percentage of a biogenic assemblage must be covered by a single species to declare it a monospecific assemblage? Does this value vary for living and fossil assemblages?
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Dear Suman, I think apart of the methodology to clarify dominance in an specific assemblage, your question have some theory discussion. If you found an assemblage where a species is dominant you can not say that that assemblage is monospecific because you have other species. Even, if that species is 99.99% of the abundance is not monospecific because there are other species with the 0.01%. The only possibility to be an "monospecific assemblage" is when you only found one species and in that case I will not call that an assemblage is just a population of that species.
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Can anyone help me identify the creature  of the picture, plant or animal? Thanks a lot!
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Zhang:
Without details of magnification and the source of the material nothing concrete can be said. Preliminary assessment rules out any plant or animal origin.
Best
Syed
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It can be an orthoceras?
Best,
Hakima
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Hakima:
I suspect this to be a piece of Crinoidal Limestone, though picture quality is not of desired expectation - Do check CaCO3 and other skeletal elements like Coral remains.
Best
Syed
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It could be a Gryphaea Sp?
Best,
Hakima
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Susheel:
Till Hakima furnishes age and locality of the specimens, it is advisable to have a look at this link for detailed insights about the related taxa.
Best
Syed
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I know, it is very fragmentary (3 pictures on the top), but it is very similar to the amiiform basioccipital, figured by Cavin et al., 2007 (also on the figure).
Any opinions are welcome!
Regards;
Márton
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to Adriana Lopez-Arbarello: no pores, no aortal facets. The specimen is very fragmentary, and it only resembles me to an amiid basioccipital. :(
to Matija Križnar: size is nearly 2 cm, correct :) a basioccipital is also symmetrical in dorsal/ventral view, isn't it? But anyway, I will check the bones aforementioned by You, thank You :)
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Dear colleagues
The attached file consists of an image which taken from paleogene phosphatic limestones of Pabdeh Formation in Lar mountains (south west of Iran). Nominated layer belongs to middle part of this Formation and based on planktonic foraminiferal studies (Daneshian et al., 2015) estimated Lutetian-Bartonian stage. Field and petrographic studies denote that there are some sedimentary structures such as: Hummocky cross stratification, cross lamination, ripple marks and amalgamation which can be categorized as tempestites. Please, if you find any mistakes in my opinion, could you please correct them?
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HI,
Please, read this article :
Pomar L., Morsilli, M, Hallock, P. et Bádenas, B. 2012. Internal waves, an underexplored source of turbulence events in the sedimentary record. Earth-Science Reviews, 111, pp. 56-81.
It can gives you more ideas.
Good luck
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What kind of environment does it indicate if winged fruits e.g. Acer, Ulmus, Engelhardtia, Cedrelospermum are extremely abundant in a paleoflora? Is there any reference?
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Jia:
This link with references therein should prove useful:
Best
Syed
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I have seen in several publications on paleoecology that the C3/C4 diet, inferred by carbon isotopes, is treated as exactly the same as the difference between browsing and grazing. Nevertheless it appears that the non tropical grasses use mostly the C3 pathway and tropical grasses use more the C4 pathway.  
So my questions are: Does a  C4 diet mean necessarily predominantly grazing behaviour? And is C3 diet clearly browsing or could it be both?
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A C4 diet indicates grasing, but only in the tropics. In the tropics many grasses, especially the savannah grasses, use the C4 pathway, while all trees use C3. However, outside the tropics most grasses also uses C3. For instance, the cows in Europe eat C3 grasses.
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My current research is working on shedding light on a possible new species that is found in the lower Pennsylvanian (Sharon Conglomerate) of Ohio. It closely resembles some species in a genus called Orthogoniopteris. The genus was erected by E.B. ANDREWS in "REPORT OF THE GEOLOGICAL SURVEY OF OHIO. VOLUME II. PART II. PALEONTOLOGY" (1875). [Parts of paper and illustration are linked files.]
It was found by ANDREWS near Rushville, Ohio along with rare species Palaeopteridium and Megalopteris, suggesting a seasonally dry setting. (Lower Pennsylvanian of Carboniferous)
My research suggest that nobody (apart from Lesquereux and a few others in the 1800s) has done work on this genus. I may be wrong. A.T. Cross did collect some specimens in the 1960s but may not have published anything.
Does anyone know of any emending or further study or references or anything else regarding the genus Orthogoniopteris?
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They could well be promising. It is necessary to remove a piece of the carbon layer, probably in the first instance using fine needles. They then have to be macerated with nitric acid probably with a little potassium chlorate added.  When they have turned a brown colour, they then need washing in ammonium hydroxide and then you should (with luck!) be left with the cuticle, which can be mounted on microscope slides for examination.  This is clearly a laboratory procedure and needs to be done with care.
To get larger pieces off, you need to macerate a piece of the fossil in hydrofluoric acid.  But that is nasty stuff and needs to be done by someone experienced in a lab specially set up with dealing with (and disposing of) that acid.
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Here is one fossil fish bone from the middle Sarmatian of Eastern Europe. I suggest that it belonged to a gobiid fish. Is it true or not? If yes, which genus and species it was?
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Hi Olesandr
Yes the size and shape reminds us of an Otolith.
Best
Syed
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Veller et al. (2002) classified the biogeographic methods in a priori, which allow data modification in cladograms, cutting and add taxa to getting a maximum adjustment of general area cladogram, and a posteriori methods with not allow alteration of cladograms and explain the incongruences after the analysis. In this classification BPA (Brooks Parsimony Analysis) is put in a posteriori method. Thus, is possible apply the time-slicing method of Upchurch et al. (2002) to a BPA of fossils taxa?
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Check out this publication
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paleotology
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Dear Xun
please see link below:
also Zhou et al.  (1995) which is attached
Regards
Massih
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I was reading Chatterjee & Templin 2004 and they mention that pterosaurs are classed as basal ornithodirans because of the hindlimb morphology and referenced Unwin & Lu 1997. After reading Unwin & Lu, there isn't mention to this basal relationship nor the hindlimb morphology. 
So my question is why are they classed as basal ornithodires based upon the hindlimb morphology?
Thank you
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According to Tatarinov the apomorphy of ornithodiras is mesotarsal articulation. This is the type of articulation when the joint is located between two rows of tarsal bones in contrast to crurotarsal articulation located between astragalus and calcaneus.
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Dear colleagues!
Can anybody help me with one biological/paleobiological question? Recent Nautilida, as well as many ancient nautiloids, have a cicatrix on their embryonic shell. During formation of the embryonic shell the area of cicatrix initially forms from organic material and later became calcified. Very likely, the shell with cicatrix was the basal type of cephalopod embryonic shell, the second type with protoconch could have appeared later. Monoplacophora is considered as cephalopod ancestor, but I have never seen cicatrix in their shells. Do you know any examples of cicatrix in non-cephalopod mollusks, especially in fossil or modern Monoplacophora?
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The photos of nautiloid cicatrix are from my own collection and from the article R.Chirat, S. Von Boletzky (2003) Morphogenetic significance of the conchal furrow in nautiloids: evidence from early embryonic shell development of Jurassic Nautilida
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Dear Dr.Bulot, dear Dr.Fuchs
Thank you very much for your help!
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AbduRazzak called this as Incertae sedis. From Wadi Musawa section, Jabal Ja'alan area,S E Oman.Middle Eocene.T hreev iews of sames pecimenx, 65.
Descyiption: External: Test cone shape with circular to slightly convex base. There are 14-18 triangular chambers arranged alternatively and divided by thick sutures orsepta.T he aperturei s roundeda nd surroundedb y a thick lip locateda t the top of the cone.
Axial section: Small sized glassy tube-like narrowing towards the top and infilled
with calcite. Periphery round slightly lobate. Sutures are straight. Aperture rounded raiseda nd su, rroundedw ith two lips.
Equatorial section: Rounded plate-like shape, divided into four triangular chambers.Periphery rounded with a thick margin.
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Dear colleague,
The gross morphology of your microfossils reminds me of Bolboformids (microfossils incertae sedis) which are recorded and described from marine Eocene to Pliocene sediments. You may check: Spiegler, D. & Daniels, C. von (1991): A stratigraphic and taxonomic atlas of Bolboforma (Protophytes, incertae sedis, Tertiary). Journal of Foraminiferal Research 21 (2): 126-158 or Murray, J.W. (1984): Biostratigraphic value of Bolboforma, Leg 81, Rockall Plateau. Initial Reports of the DSDP LXXXI: 535-539.
Best wishes, Mike
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Microscopically, it is easy to tell the difference between biotite and chlorite, but in field work we don't have the luxury of microscopy.
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Dear Paul,
You know very well that the terms 'biotite' and 'chlorite' include two very complex mineral groups that can be colored both very similar, and on the other hand, may occur in close parallel intergrowth.
In my experience, biotite and chlorite are distinguishable in the field work only in very specific cases:
1) The crystals (leaves) may not be strongly deformed (crumpled).
2) The crystals (leaves) may not be subparallel intergrown with each other.
3) The crystals (leaves) may not be strongly altered (discolored by oxidation, etc.).
4) The crystals (leaves) must be large enough so that you can stick with your fingertips or with a pair of tweezers.
If these conditions are met, then there is a trick in the field work to distinguish biotite- and chlorite leaves reliably from each other:
Biotite (and also muscovite) leaves jump into the starting position when trying to bend it or folding (elastic deformation).
Chlorite leaves remain in the bent position (plastic deformation).
Try it, you'll see: it works!
Best regards,
Guenter
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I got this Megalodon tooth fossil. Size is approximately 15.5cm long. I found unusual marks on the root. Something scratched marks on the same position and has the same form or on a regularly. It`s like a tooth mark which caused by sharp teeth. Is that true tooth mark?
 
 
 
 
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I do not know whether these structures were made physically or biogenically. However, the term "tooth mark" is to be avoided because a "mark" generally refers to a physically made structure, while a "trace" is made biogenically. The term "bite trace" or "biting trace" is preferable to "tooth mark."
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I'm looking to identify very small spherical objects which were found in Upper Oxfordian black clay (Amoeboceras glosense Zone) in the Moscow region. They are 0.25-0.3 mm in diameter and occur in clay together with foraminifers, fish otolithes and embryonic shells of gastropods and bivalves. They are very abundant in Amoeboceras ilovaiskii Subzone and sparse in Amoeboceras glosense Subzone. They are spherical and shiny, with smooth surface, their internal structure seems to be grained.
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Upd. 14 March 2015
Dear colleagues, I apologize for the delay with SEM-photos. Now I can present these photos. The microspheres are not perfectly round. There are no any layers inside them. I also have attached the results of EDS-analysis. It seems that I was wrong when I thought they were solid before fossilization. These microspheres look like phosphatized eggs or cysts. Maybe it's something like Brine shrimp (Artemiidae) egg/cyst?
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Even if spherical objects are quite common in the fossil record, these look very intruiging to me. I have, together with my colluege Mats Eriksson, done some work on spherical things we thought were Cambrian embryos. We used the micro tomography facility, TOMCAT, at the Swiss Light Source (SLS) in Switzerland. This non-destructive method is a brilliant help in deciphering the internal structures of fossil material. The data set consists of 100-2000 tiff images (i.e digital thin sections) that is combined in a 3D-program ( I am using Voxler3), whereafter you can detect morphologic features down to about 1 micron and spot internal structures in situ in great detail. If you are interested in having a go on this, we can run a few of your spheres the next time me or Mats have beam time at SLS. Interested?
Cheers,
Fredrik
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Part of the Welsh Basin Hirnantia Fauna. The big one appears to be H. sagittifera - does anyone have a name for the small one at bottom right?
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Hi! I have been working with the Hirnantia fauna and it seems familiar to me, but I haven't found it in the associations from the Argentine Precordillera. Have you checked this paper?
Rong, J.Y., Huang, B., Zhan, R.-B. and Harper, D.A.T. 2008. Latest Ordovician brachiopod and trilobite assemblage from Yuhang, northern Zhejiang, East China: a window on Hirnantian deep-water benthos. Historical Biology 20: 137–148.
In figure 3 there is a damanellid indet that reminds me of it.
Do you have more specimens?
I think you could contact Robin Cocks, he has worked with this fauna many years and he is very kind. I think he will be interested.
Hope I could be of any help.
Karen
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We found a well preserved fossil fish in older Pleistocene lacustrine sediments composed of clastic varves. If there is anyone who can help, please, contact me !
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Hello!
I've seen quite a few papers on this topic on the Olexandr Kovalchuk's page.
You can have a look at his ResearchGate profile and publications, and maybe contact him and see if he's interested:
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I am interested in finding out if anyone has done a study on peanuts in southern Africa and can give approximate dates for their arrival in the area.
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Really peanats?
History
The domesticated peanut is an amphidiploid or allotetraploid, meaning that it has two sets of chromosomes from two different species, thought to be A. duranensis and A. ipaensis. These probably combined in the wild to form the tetraploid species A. monticola, which gave rise to the domesticated peanut.[4] This domestication might have taken place in Paraguay or Bolivia, where the wildest strains grow today. Many pre-Columbian cultures, such as the Moche, depicted peanuts in their art.[5]
Archeologists have dated the oldest specimens to about 7,600 years, found in Peru.[6] Cultivation spread as far as Mesoamerica, where the Spanish conquistadors found the tlalcacahuatl (the plant's Nahuatl name, whence Mexican Spanish cacahuate, Castillian Spanish "cacahuete," and French cacahuète) being offered for sale in the marketplace of Tenochtitlan (Mexico City). The peanut was later spread worldwide by European traders.
Or do you actually mean Bambara groundnut?
In West Africa farmers were already cultivating a plant from the same family, the Bambara groundnut, which also grows its seed pods underground. Vigna subterranea (also known by its common names Bambara groundnut, Bambara-bean,[2] Congo goober,[2] earth pea,[3] ground-bean,[2] or hog-peanut[2]) is a member of the family Fabaceae. 
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Hello every body.
First of all, season greetings !!!
I have been on a Christmas market and I have seen these “weird” fossils, I mean the central ones. They are circular with a central structure (helicoidal?). I am a Tertiary guy and I am not a specialist of Paleozoic fossils. The seller tells that are jellyfishes. For me it looks pretty much as a not well-preserved Ediacaran Tribrachidium. The sediment where it is preserved is sandstone. However, I know a little the area where it has been discovered. Confirmed by the seller, this is Devonian.
Is it a jellyfish ? Is there still Ediacaran fauna during the Devonian ?
Thank you very much for your answer and Happy new year.
Bastien MENNECART
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Dear Bastien,
This is an Eldonia, maybe an E. berbera (Alessandrello and Bracchi, 2003), from the Upper Ordovician of Morocco. This genus is well known from the Burgess Shale Fauna (Cambrian of Canada), the ordovician species from North Africa are the youngest members of this genus... Classification as medusae is not really clear, depending which author you will follow.
In contrast to the not very trustfull trilobite on your picture, the Eldonids and also the Scyphocrinites (Crinoid) are very well preserved specimens.
Best regards
Johannes
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I may suggest you to contact Kevin Page: kevin.page@plymouth.ac.uk 
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If I have an alignment of a protein family and know the topology for a phylogenetic tree, which computer program could be recommend for the restoration of the ancestral sequencies constituting for internal tree nodes?
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For model based Bayesian softwares I would definitely go for BEAST.
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This specimn found in the Badamu Formation.
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Hello Tayyeb,
I'm sorry to say that in my opinion, an identification based solely on the view given in this photo is nigh on impossible. For the positive identification of a species one needs  to see the shell or mold with ribs and whorls, and also views of the external side and the mouth aperture, or at least the molds thereof. Am I correct in assuming that the Badamu Formation is of lower Bajocian age?
I have however just found something here which may be of help to you:
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I know that in years past, it has often been suggested that predatory maniraptoran dinosaurs (mainly troodontids and dromaeosaurids) used their forelimbs to catch food. Indeed, Ostrom originally suggested that flapping behavior began as an extrapolation of the prey catching stroke. However, now that we know more about the anatomy of these predatory dinosaurs, specifically that many forms had large secondary and primary feathers on their arms and were incapable of pronating their hands, I am having a hard time seeing how the forelimbs could have been of any use in predatory behavior. There doesn't seem to be any way that they could have been rotated to grab prey, nor slash at conspecifics or larger prey items. Yet there has to have been some function for having flexible clawed digits in maniraptorans, as nearly all maniraptorans have well-developed hands, and indeed many early birds still had well-developed digits.
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I remember a poster at the SVP meeting in Berlin this year (2014) about the grasping capabilities of a non-maniraptoran coelurosaur:
SULLIVAN, Yu, Xu 2014, MANUAL FLEXIBILITY AND GRASPING ABILITY IN THE BASAL TYRANNOSAUROID DINOSAUR GUANLONG WUCAII. Journal of Vertebrate Paleontology, Program and Abstracts, 2014, page 237
Perhaps thinking about the hands of the sistergroup to Maniraptora within the Coelurosauria offers some interesting ideas.
edit: removed a typo
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I am confused as to how to interpret and use this equation. Is the bracketed equation (SL/1.8)h or SL/(1.8h)?
I have used the units 1.36 for h and 2.53 for SL and have results of:8.371m/s
Does this seem logical given the maths?
Hope this makes sense
Thank you!
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The Brackested Term is (SL/1.8)*h
The equation can be explained as follows:
The original Equation by Alexander, Langmann, and Jayes (1977) suggested for use in cantering or galloping animals
SL/h = 1.8*(u^2 / g*h)^0.39
(with u = Speed)
In Mammals SL/h is about 2.0 in the transition from walking to trotting and about 2.9 in transition from trotting to galloping.
According to Thulborn & Wade (1984) your use of
(1) V=[gh(SL/1.8h)^2.56]^0.5)
this Version instead of
(2) V = 0.25*g^0.5*SL^1.67*h^-1.17
(were in your case SL/h is 2.53/1.36 is 1.86) shows how important it is to use the the right equation. With Equation (1) the animal is about 30 km/h fast, with equation (2) it's a more moderate speed of 9.27 km/h
Even more fundamental critique derives from the difference in limb kinematics between dinosaurs and mammals (which were ultimately used by Alexander to derive his equation). (I remember a talk about this by Heinrich Mallison at Symposion about sauropod giantism at the centenary meting of the Paläontologische Gesellschaft in 2012, but all I could find on a fast search in the internet is the direct predecessor of the talk I remember; a talk at the SVP meeting in November 2011: http://dinosaurpalaeo.wordpress.com/2011/11/10/my-svp-talk-fast-forward-dinosaurs-part-1/)
P.S.: I hope I made no typo in the equations
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I'm interested in how to exploit cracks, microcracks, pits... found on skark teeth
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I was wondering if anyone had any information on barnacles (Coronulids and/or goose barnacles) on humpback whales in the Persian/Arabian Gulf? In fact anything on humpbacks from that part of the world would be useful to know.
I am working on a humpback whale that we excavated in Abu Dhabi (ca 5000 years old) and which has associated barnacles. However, there does not appear to be much known about these whales in the Gulf today. If you know anything about the diatoms associated with whales in this region that would also be of interest.
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It is not in the Persian Gulf though, have you seen the work of Barbara Avezuela?
regards,
Gloria
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I'm trying to estimate the speeds of dinosaur footprints using Alexander's 1976 formula (speed (m/s) = 0.25 x gravitational constant0.5 x Stride length1.67 x hip height-1.17
I'm using Microsoft Excel to produce a calculated table but I'm not sure how to input the data and equation.
I currently am using the gravitational constant at 6.673 then inputting this into my spreadsheet with the term
=6.673(0.5)*248(1.67)*2.48(-1.17) and the results do not seem correct (I got -4009.56
Does anyone know where I am going wrong and how to fix this?
Thank you in advance
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Its not just your units that are wrong! the formula you give has powers (speed (m/s) = 0.25 x gravitational constant0.5 x Stride length1.67 x hip height-1.17. But you numerical example implies you have multiplied everything.
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Hello all, I'm working on Cambrian molluscan systematics and can't seem to get my hands on a copy of the original family description or any more recent fulsome descriptions. Can anyone point me in the right direction?
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Sent!
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Does anyone know whether the correct binomen for the monito del monte is Dromiciops gliroides or Dromiciops australis? Looking at the taxonomic history of the species, it looks like australis was named a year before gliroides, and the holotype was never lost, so why do all publications seem to use the name D. gliroides? Was there some ruling from the ICZN or something that suppressed D. australis?
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The correct binomen is Dromiciops gliroides, because Philippi described the same species in 1893 as Didelphys australis, a name preoccupied by Didelphys australis Goldfuss, 1809 (= “Pennants New Holland opossum, a phalangerid”, according to Hershkovitz, Ph. 1999. Dromiciops gliroides Thomas, 1894, last of the Microbiotheria [Marsupialia], with a review of the family Microbiotheriidae. Fieldiana [Zool.], N.S., No. 93, page 26; the identity of the latter species remains obscure, though).
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Hi,
I'm currently using Alexander's 1976 formulae to determine dinosaur speeds from trackways.
The trackway I have in question is 11 tracks long. To determine the speed, do I use the formula on each set of prints and their stride, or just the one set?
Thank you,
Danny.
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You could measure the stride length for each step cycle - 3 consecutive imprints (or sets of manual + pedal imprints in case of quadruped animals) = 1 step cycle, 11 imprints = 9 step cycles - and then do an averaging over all step cycles (mean stride length).
If the trackway pattern shows considerable variation (e.g. curves) you should rather calculate distinct velocities for different parts of the trackway and discuss that.
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I am working on reconstructing the vegetation dynamics of a Middle Pennsylvanian dryland environment. I need to find an existing reconstruction of the plant that bore Taeniopteris leaves -- it need not be wholly 'accurate', but a good estimate would be nice.
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Hi Arden
In the 1980's we did some paleobotany work out here in the Permian (Leonardian= Kungurian) of west Texas- Google Sergius Mamay. Also, see http://www.gigantopteroid.org/html/articles.htm . These may at least point you in the direction. I know this is somewhat later than what you are interested in.
Cheers
Kurt Stropoli
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I'm interested in finding the most up-to-date and/or the most used qualitative/quantitative method for recording of alveolar resorption (associated with periodontal disease). The method should be applicable to archaeological human remains.  
Thanks in advance!
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I hope This  given book may help you to get information on this present topic
The Archaeology of Human Bones
By Simon Mays
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We are looking for an Eocene specimen from Hordle (SE England). It was published in the "Upper Eocene Flora of Hordle, Hants" (Palaeontrographical Society, 1924). We would acknowledge any information about where such collection could be housed.
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I think you should also ask Margaret Collinson.
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Does anyone know of any sites in the fossil record that represent either a colonial rodent colony or a microfaunal "pocket" that accumulated via material flowing into an already-present rodent burrow? One would think that because of their burrowing habits and gregarious behavior, colonial rodents like prairie dogs, tuco-tucos, and the like would be almost "ready-made" for fossilization, but I am unaware of any specimens or sites being documented as such in the literature.
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Thank you both so much for your help, this has really given me a good direction to go in.
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These features occur in disk-shaped concretions in what we suspect are deep water turbidites. I have not seen the rock myself, and alI have is this picture. We are working on more precision on the age of this unit, it may be as young as Upper Eocene.
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This is a nice trace trace fossil, best refereble to Rhabdoglyphus Vassoievitch, 1951, not a body fossil. The photo isn't great (the lighting doesn't bring out details), and the specimen might be water worn, which perhaps obliterated some details of the transverse ridges at the top and bottom of the picture. The exterior of the specimen is dominated by transverse ridges and doesn't consist of the screw-like whorls of Helicodromites Berger, 1957. Nereites has a longitudinal central depression and two lateral lobes that consist of a series of leaf-like depressions. 
MacGabhann (hi, again!) correctly notes that identification really requires knowing if this is the top, side, or base of a bed (determinable in part by slabbing).
If the bottom of a bed (which seems possible), it is important that the six or so transverse ridges in the middle part of the trace below the large crack and "SSE" of the bottom of the yellow pen cap seem to show a steeper upper slope (to the top of the photo) and a more gentle slope toward the bottom of the photo. This sort of roughly cylindrical tube with transverse,  closely spaced ridges that mark the outer edges of invaginated "calices" occurs in relatively small traces (to 8 mm wide) on bed bases that are referred to Rhabdoglyphus ichnosp. b by M. Ksiazkiewicz (1970, Observations on the ichnofauna of the Polish Carpathians, p. 283-322, in T.P. Crimes and J.C. Harper (eds.), Trace Fossils, Geological Journal Special Issue 3, Seel House Press, Liverpool). The gentle curvature shown in the photo isn't reported in other Rhabdoglyphus, as far as I know.
R. ichnosp. b was reported to have a long range (Senonian-Paleocene) in 1970 in "flysch" facies, but maybe runs higher.
Vallon's observation that the trace seems to be composed of backfills is borne out by the sections through the backfills at the top of the photo.   
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To identify a species we can use different methods, among which we can highlight the holistic identification (considering the general appearance of the individual to determine), the browsing (comparing with images or collections) and keys. Identification keys have been widely spread in neobotánica among all users since it allowed to spread and manage information generated by specialists who have worked in the flora of a geographical area or in a given taxon monograph. So, the information can be used by other researchers not –specialized in that taxon (eg specialists in other areas such as ecology, agronomy, anthropology , medicine ...) by students, amateurs and other users of the plants. In short , it has been a major instrument to democratize the specialist knowledge and allow other uses.
In contrast, in paleobotany , key usage has been rather anecdotal, with few exceptions, most aimed at students and amateurs. The identification has focused on browsing and holistic identification (which could also be called expert-identification).
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It is true that the botanical taxonomy is mainly based on sexual characteristics and to identify a specimen, often can be available the information of the whole plant. Traditional keys are often supported in these sexual characteristics, thereby providing taxonomic information (such as order or family). Consequently, in addition to its primary function of identifying a specimen, the keys provide support for taxonomic assignment. But this kind of traditional keys has a limited role in many cases.
The alternative is the field keys (see for instance Lawrence & Hawthorne, 2006) based on the best characters for the determination rather than the best characters for the taxonomy. For example, in tropical trees is often difficult to see the flowers, so that the determination must be based on features of the leaves, bark or even other as odors. There are other examples, such winter woody plants keys (for example Schultz, 1999 ) based on characteristics such as morphology of the shoots or leaf scars. The latter, relatively speaking, would not differ too much from a genus-form.
Therefore, I agree that traditional classification schemes are not applicable to fossil plants, but it could be possible to generate keys designed specifically for form-genus, applying field-key schemes and targeted to the species (that is, leaving aside the taxonomy unless it is linked to useful features for identification).
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