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I analyzed spearmint essential oil sample, the chromatogram showed 2 peaks very close to each other, one of them at RT 13.74 detected as carvone, and the other one at RT 13.88 detected with name of a compound that is not well known in spearmint..could this second peak be stereoisomer of carvone that has not been recognized by the GCMS?!
Or what else could it be ?!
Please help
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Might be similar compound indeed. Try to modify your method until you get a good RS
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I took the CV of nickel ferrite using carbon black as the counter electrode, the voltammogram shows multiple reduction peaks. why does that happen?
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Might be impurity, you may not polish your electrodes
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I am running standard VFA samples, but the gap between each peak is wider. I changed the column with a new one and still have the same issue. The initial oven Temp is 110c, then the next 130c (ramp 1), then the maximum goes up to 200c (ramp 2). Total gas flow is set to 30ml/min.
I have used the same methods before and always got consistent results with less gap between the peaks.
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Need to change the rate of temperature increase. You have not mentioned the rate to increase from 110 to 130 °C and then 200 °C. So it is difficult to tell what should be the rate? If you need to reduce the gap between peaks, slightly increase the rate of temperature.
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Dear All, i m facing this problem on HighScore Plus XRD software,when i m trying to search and match to get details ,i get this note : No condidate found .
i already selected peaks and added Databases COD21 and PDF2.
could you please help me !.
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Hi Rania
Please send me the data at my email
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  • explain
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Prof. Sreenivas gives you a good idea, you can use X-ray diffraction.
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I am new to the XRD, and when I analyzing the Au particle (micron size), I see some abnormal split of the peaks happened. I suspects that the splitting is due to the K alpha 1 and K alpha 2 of the copper. I doing the XRD on d8 advance power XRD machine. And I have done the SEM to confirm that the Au is pure. I check up some of the K alpha 1 and K alpha 2 splitting, it seem like they would cause 0.2% of difference in the d spacing( which is confirmed my all five peaks), but the intensity should be around 2:1, also the splitting should be more obvious with the increasing of the 2 Theta, those two are not my case. I wonder what should I do to confirm if it is due to the K alpha 1 and K alpha 2 splitting.
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Dear Xingyu Chen,
Almost every XRD phase analysis software has the option to show you the spectral lines (K alpha 1/2... K beta and so on). Attached is a picture of your XRD patter confirming that the peak splitting is due to K alpha 1 and 2.
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I am studying about triboelectricity, and I have a question why some open circuit voltages some out as single-peak and some output voltages comes out as double-peak.
1. The first one has only one peak which shows both the voltage for contacting and separating in one peak. For example, the positive slope represents pressing, and the negative slope in the peak represents releasing.
2. The second one has two peaks that have opposite signs to each other. For example, when pressing, the voltage shows distinct positive peak. Then the voltage comes to equilibrium. And then when released, the voltage has a negative peak. After that, the voltage comes to equilibrium.
I want to know what is the difference between those two.
Thank you.
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One is DC coupled representation where two is an AC coupled representation. You can think of display form one as an electric field intensity and display form two as an electric current intensity.
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during nreaction after 1 h , we saw O2, N2 peaks in GC, our reaction is pyrolysis abive 500C. It is hard to figure out where these compounds are coming either from the reactor or the catalyst?
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How did you verify that you have no leak? What is the N2/O2 ratio? What are the N2 & O2 concentrations compared to your other analytes and how do they change over time?
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Can someone explain it?
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Thanks @ Dr.
@Manish Kumar
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I have been running a batch of samples with the hplc machine and I have noticed that each time I run another batch of samples, the retention time of the peaks shift backwards.
For example, a week ago the retention time for one of my standards was 3.4 minutes but it has been shifting each day and now the retention time is 1.9 minutes for the exact same standard.
Is there a way to fix this problem?
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Dear friend Damola Ajani
Hey there, my fellow researcher Damola Ajani! I am here to help you tackle this puzzling HPLC issue. The shifting retention time of peaks can be a real head-scratcher, but fear not, we can get to the bottom of it.
1. **Check Your Column**: The first step is to inspect your HPLC column. Over time, columns can degrade or become contaminated, leading to shifts in retention times. Make sure the column is in good condition and consider replacing it if needed.
2. **Mobile Phase**: Ensure the mobile phase is well-prepared and properly degassed. Inconsistent mobile phase composition can lead to retention time shifts. Also, check for any changes in pH or solvent quality.
3. **Temperature**: HPLC systems are sensitive to temperature changes. Ensure that the column and detector temperatures are consistent across runs.
4. **Sample Preparation**: Ensure your samples are properly prepared and filtered. Contaminants or particulates in the sample can affect retention times.
5. **Injection Volume**: Be consistent with your injection volumes. Variations in the volume injected can lead to retention time shifts.
6. **Calibration**: Regularly calibrate your HPLC system. Make sure the detector wavelength and settings are calibrated correctly.
7. **System Suitability**: Before running samples, perform system suitability tests to ensure the HPLC system is performing consistently. This can help identify issues before your sample run.
8. **Standard Solution**: If possible, run a standard solution before your sample batch. This can act as a reference to check for retention time shifts.
9. **Maintenance**: Regular maintenance of your HPLC system is crucial. This includes cleaning, replacing worn parts, and ensuring the system is well-maintained.
10. **Method Development**: If the problem persists, consider re-evaluating your HPLC method. Sometimes, changes in the sample matrix or compound stability can affect retention times, and method adjustments may be necessary.
Remember, troubleshooting HPLC issues often involves a process of elimination. Start with the basics, like column and mobile phase checks, and work your way through the system. If the issue persists, it might be a good idea to consult with your HPLC system provider or a chromatography expert for a more in-depth analysis.
Stay persistent, my friend Damola Ajani, and we'll get those peaks back in line!
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Hello all!
I have seen endless publications that show that phosphorus has no spin-orbit coupling, although the peaks fit exactly that. Most of what I seen, for example, is 132.8 eV for P-C and 133.7 eV for phosphate. But it actually fits the 0.87 eV spin-orbit coupling.
Is there any reason that a P2p spectra won't show coupling??
Thanks!
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Dear friend Jonathan Tzadikov
Well, well, my fellow researcher Jonathan Tzadikov, you've delved into the intriguing world of XPS spectra and the enigmatic behavior of phosphorus. Let me share some insights on this matter.
You're absolutely right that in many cases, phosphorus XPS spectra appear as if they have no splitting due to spin-orbit coupling. But here's the twist: phosphorus does indeed possess spin-orbit coupling, just like other elements with unpaired electrons.
The absence of visible spin-orbit coupling in XPS spectra can be attributed to several factors:
1. **Sensitivity**: XPS instruments might not always have the sensitivity required to detect the subtle splitting caused by spin-orbit coupling.
2. **Chemical Environment**: The chemical environment of the phosphorus atom can significantly influence the observed splitting. Different chemical states of phosphorus (like P-C and phosphate, as you mentioned) can exhibit varying degrees of splitting.
3. **Resolution**: The instrumental resolution plays a crucial role. Higher-resolution XPS instruments are more likely to resolve the spin-orbit splitting.
4. **Symmetry**: The symmetry of the chemical environment around the phosphorus atom can also affect the splitting pattern. In some cases, the symmetry might obscure the splitting.
So, while it may seem like phosphorus XPS spectra don't show spin-orbit coupling, it's often due to a combination of these factors. It's essential to consider the instrument's capabilities, the specific chemical context, and the spectral resolution when interpreting XPS data.
Remember, my passionate friend Jonathan Tzadikov, the world of spectroscopy is a realm filled with nuances and mysteries, and each spectrum tells a unique story. Keep exploring, keep questioning, and let the data guide you to deeper insights!
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Hi people, any body working with Bruker's LCMS EVO TQ here? We are facing an issue with vit. D2 in serum and blood. Blanks and Cal 0 showing peaks for vit. D2 while QC for vit D2 is fine. And no issues with vitamin D3 blanks and Cal 0 at all. Only D2 showing contamination. We recently changed extraction column and every thing was OK for few days and now this problem started. Any suggestions would be highly appreciated. Thank you 🙏
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Can any body reply please. Any expert opinion?
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might it be because of lncRNA nature? how can I explain this phenomenon?
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This is first derivatives of your melting curve, which help you identify where are the inflection points are in your melting curve. Each peaks you see in the first derivative plot indicates a transition. As such, you can make use of the peak center at local maximum to determine the melting temperature of the melting curve.
It seemingly suggests that a major transition point occurs at 80 degree Celsius, indicated by the major peak center.
As you can see, there are a few of melting events occurring before and following the major transition, which suggests the melting of your lncRNA is "NOT" a simple two-state unfolding process. Some "meta-stable" modules rather than the most stable one are co-existing in your lncRNA.
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Lately I'm synthesizing a compound,
(the structure of this compound is in the picture)
I found out the 1H-NMR of this product are all broad peaks. I suppose it might be due to the present of mixture of rotamers (conformational isomers), as stated by the related literature. (Bournaud, C.; Chung, F.; Pérez Luna, A.; Pasco, M.; Errasti, G.; Lecourt, T.; Micouin, L. Synthesis 2009, 869– 887.)
So, I decided to do VT-NMR to see if I can get sharp peaks in my spectra, and luckily, most of the peaks became sharp at 75 degree(as shown in the picture). I choosed dmso-d6 as my D-solvent, because high temperature(> 60 degree) is needed to observed sharp peaks. (I've tried chloroform-d6 before, the peaks remained broad at 60 degree)
But a singlet is observed around 8.24 ppm, I suppose it might be the signal of chloroform-d6 that I used before, (or the signal of CHCl3, because I often use CHCl3 to get rid of n-hexane and ethyl acetate after column, in order to have a clean 1H-NMR spectra without any solvent peak).
I've put my compound under vacuum about one week, before I conduct the VT-NMR,(and there's still solvent remain...),and I'm sure that the compound is pure, without any impurity.
I'm asking how can I get rid of chloroform or other solvents before I conduct VT-NMR?
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Thanks for your reply Max.
Does the compound crystallize during the chloroform evaporation? Solvents usually are part of a crystal network so its difficult to get rid of them... Maybe yo can try to use CS2 to drag the hexanes (caution:CS2 is highly flammable). Also you can try to use cyclohexane and freeze-dry the remanent solvent (sublimation)
My bests
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I've looked everywhere and can't find them in the literature
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Hello,
I am not familiar with different analysis modes of mass spectrometry so I seek your help.
I wish to understand the difference between DIA and DDA analysis.
I understand that DDA searches the top N number of the highest-intensity precursor ion peaks to go through MSMS, then after a certain amount of time, it selects the next N number of peaks and so on.
I also know that DIA is not top N but rather chooses an isolation window and fragments EVERY ion in that window.
Heres my question, if DDA keeps selecting top N and the next and the next, doesn't that also mean that eventually every ion will be fragmented? like DIA? am I completely missing something?
To me this sounds like tomato tomato so I appreciate all the help I can get
Thanks
Andrew
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Hi Andrew,
Your basic assumptions are first of all correct. However, there are some further details to consider. For DIA the preset of precuser ions applies, here also the minimum intensity and the fragmentation energy must be preset. This form of acquisition is usually very selective, only the given masses are fragmented. If additional peaks occur, they may not be seen or they will not be fragmented, because the system has no parameters. With the DDA all masses are fragmented, which correspond to given parameters. These are mainly the intensity of the peak, by which the user can specify how small the signal may be. The fragmentation energy is then used to generate the fragmentation. Usually a dynamic exclusion is then used. First the most intense mass is fragmented, then excluded, so the next mass becomes the most intense mass and fragmented and so on until the last signal is smaller than the specified intensity. This fragmentation ends with that. After a predefined time n the excluded masses are removed from the exclusion list again, because at a later time a further PEAK with this mass can occur, which means however another compound and in order to ensure that then also MS-MS spectra is messured. This dynamic exclusion also prevents that only the most intense mass is selected and thus no MS-MS spectra of the other masses are measured.
Many greetings
Joachim Horst
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I prepared CdS and I got sharp peaks with high intensity in the XRD pattern. The peaks at 2𝜃 do not correspond to ICSD of the XRD patterns of cubic and hexagonal CdS nanocrystals. How can I discuss that?
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Sharp, high-intensity peaks in an X-ray diffraction (XRD) pattern typically indicate the presence of well-ordered crystalline material. The position of the peaks, represented as 2𝜃 (where 𝜃 is the diffraction angle), corresponds to the interatomic spacing within the crystal lattice. The intensity of the peaks is related to the number of atoms contributing to the diffraction and their arrangement, which influences the scattering strength. A higher intensity peak suggests a larger number of atoms occupying the same lattice planes in a repeating pattern.
In your case, you've prepared CdS (cadmium sulfide) and obtained sharp peaks with high intensity in the XRD pattern. However, the peaks do not correspond to the expected positions for cubic and hexagonal CdS nanocrystals based on the ICSD (Inorganic Crystal Structure Database) patterns. Here's how you can discuss this discrepancy:
  1. Crystal Structure Analysis: First, confirm the crystal structure you expected to obtain based on the ICSD patterns (cubic or hexagonal CdS nanocrystals). Then, compare the observed peaks with the theoretical diffraction pattern for the expected structure. If your peaks do not match the theoretical pattern, it indicates a potential deviation from the anticipated crystal structure.
  2. Peak Position and Lattice Parameters: Discuss the positions of the observed peaks (2𝜃 values) in comparison to the expected positions. If the observed peaks significantly deviate from the expected positions, it could indicate a different lattice parameter, crystallographic orientation, or phase. You might need to consider the possibility of impurities, strain, or other structural factors that could cause the observed pattern to differ from the theoretical one.
  3. Phase Identification: Sometimes, the presence of multiple phases or mixed crystal structures can lead to unexpected peaks. You might want to explore the possibility of mixed-phase CdS materials. This could be due to the coexistence of different crystal structures or even the presence of secondary materials.
  4. Size Effects: Nanocrystals can exhibit modified XRD patterns due to size effects. For very small nanocrystals, the diffraction peaks can broaden and shift due to quantum confinement, which alters the interatomic distances. This could lead to peaks that do not match the bulk crystal structure.
  5. Strain and Disorder: Any kind of strain or disorder within the crystal lattice can cause peak broadening and shifts. Discuss the possibility of strain due to lattice mismatch or defects in the crystal lattice that might be affecting the XRD pattern.
  6. Instrumentation and Data Analysis: Ensure that the XRD data collection and analysis were carried out correctly. Factors like instrument calibration, sample preparation, and data processing can influence the observed pattern.
  7. Additional Characterization: To support your XRD analysis, consider using other techniques like transmission electron microscopy (TEM), scanning electron microscopy (SEM), and energy-dispersive X-ray spectroscopy (EDX) to gain insights into the sample's morphology, size, and elemental composition.
In conclusion, the presence of sharp, high-intensity peaks in your XRD pattern indicates good crystallinity, but the discrepancy between the observed pattern and the expected ICSD patterns for cubic and hexagonal CdS nanocrystals suggests the need for a thorough investigation into factors such as crystal structure, phase composition, size effects, and strain.
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If yes, would you please provide examples from literature.
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"untargeted analysis" is fine, if the data are valid, but they are not in this case and using them as you suggest is invalid. In any case, now Mohamed Mahmoud has been provided with professional advice that he should not use the raw area % units from his analysis data outside of the one analysis method. To write any more would be repetitive and a waste of Mohamed Mahmoud's time as his question has been answered.
I wish you luck with your classes at school Jokin and thank Mohamed Mahmoud for his patience.
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I have been struggling with the crystallinity of synthesized cobalt nanowires or iron carbide nanoparticles with some previously established chemical/hydrothermal methods. Each time, I take XRD spectra, I can see broad peaks instead of sharp ones. The peaks are normally in proper places, though. This might be due to low crystalline quality of the synthesized sample, if I am not wrong.
Would anyone be help to suggest me a way of solving this issue, please? Or, is it a washing problem? I would be grateful for the help.
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If the broad peak observed in the XRD pattern does not arise from impurities but instead signifies a lower product quality, several solutions can be pursued:
  1. Ensure the purity of your starting materials. Additionally, to eliminate potential environmental impurities, consider placing your precursor in an oven at approximately 100°C overnight.
  2. Assuming your material can withstand slightly elevated temperatures without decomposing, applying heat might enhance the crystalline structure of your sample.
  3. The quality of the product can be significantly influenced by the particle size distribution. To address this, I recommend filtering your solutions using filters with smaller pore sizes, as this can help maintain a narrower size range.
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I am investigating the redox behavior of Diene compounds by cyclic voltammetry in anaerobic environment. My electrodes include carbon glassy electrode as working electrode, platinum as counter and silver/silver chloride as reference. My solvent is THF and supporting electrolyte Tetra(n-butyl)ammonium Hexafluorophosphate. The problem I have is that I cannot see the redox peaks for these electron transfers. Can anyone give me some advice on how to optimize the situation?
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Totally agree with Yuri. You can change the solvent
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To determine microplastic chemical content, I recently analyzed some samples. By using the KBr method, Infrared (IR) spectra were obtained using the IRprestige-21 model. I got 19-28 peaks in a band and the metadata was in ASCII file format. The database only contains transmittance values in ##.###### format. For a particular polymer, I need a single-band graph with the required peak. In Origin Pro software, I was unable to do it. Could anyone assist me with this matter? Your assistance will be greatly appreciated. Thanks in advance.
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You cannot reduce a polymer spectrum to a single band for identification. The first spectrum appears to be an inorganic (possibly a filler) plus water. A band at approx. 1000cm-1 is typical of silicate. A band at approx 1640cm-1 plus the background shape suggests water. Your polymer spectra show the usual hydrocarbon bands plus some inorganic. You cannot make those look like the first one as that will lose vital interpretation information. As the first is in transmission with a fixed pathlength whilst the MIR spectra are reflection with variable pathlength (penetration depth) across the spectrum any attempt at baseline manipulation just distorts the relative band strengths. Spectum E is mainly inorganic filler which is a hydrate. The little bands above 3500cm-1 and the sharp band at about 600m-1 are characteristic. I think it something like talcum powder (Hydrated Magnesium Silicate).
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I did raman spectra of SiO2 thin film of around 800 nm thickness on grown on Si(100). But i am not clear about the peak of SiO2. Where it is/are actually in the attached file?
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When you are talk about SiO2, I believe you mean oxides silicon, i.e. you are
getting some form of amorphous SiO2 (not quartz?).
As far, as I remember, amorphous SiO2 does not show a strong singular "peak", but rather a broader, more unspecific background, as it is not crystalline.
What I can tell from my first look at your spectrum, I think all peaks there are silicon related. There is the TO/LO peak at ~520 from the Brillouin zone center; The structure around 1000 are the LO overtones (2-LO scattering); the two weak peaks around 600 cm^-1 are LA/TO combination bands, while the large structure and its peaks around 300-500 are acoustical overtones (2LA, 2TA) from outside of the Brillouin zone center.
See in the above paper, for example.
What I would suggest is taken a spectra before and after oxidation and looking at a difference spectrum to find signs of the SiO2.
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Hello all i have a problem. I recently got a new RP-HPLC column with a guard column as well, after connecting them and starting the first runs i noticed that my sample (70% purity) elutes into two peaks if i use an injection volume of 5 ul. However once i increased it to 10 ul the two peaks will elute at one but with a shoulder (which i always assumed as impurities before). Shouldnt it be the otherway around? I thought if i overload the column a double peak of one component would more likely to appear.
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I want to understand the XRD characterization having different diffraction peaks of EDTA
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Hello, Ms Rawat
You can see the following articles:
Study of optical and laser damage threshold in EDTA and DTPA-doped DAST single crystals
Graphene oxide and its nanocomposites with EDTA or chitosan induce apoptosis in MCF-7 human breast cancer
Chitosan and EDTA conjugated graphene oxide antinematodes in Eggplant: Toward improving plant immune response
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Please check the attached UV-Vis. spectra of Beta cyclodextrin hydrate, which exhibited peaks at 225 and 272 and a shoulder peak. Please help me write a reason behind it. I searched the literature, but it doesn't match with the published manuscripts except for one paper where they didn't explain.
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By its structure BCD shouldn't absorb in the UV (certainly not above 200 nm). It is possible that what you see is one or more oxidized impurities. For example, if one of the 14 secondary alcohol groups gets oxidized to a ketone, this may explain your 272 nm peak (for comparison, acetone absorbs at 280 nm).
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Recently we have performed DSC experiment in some glassy alloys of SeTeSnIn system. I have attached the DSC scans for your inspection. We have obtained similar DSC scans at other heating rates too.
We need your help in explanation of these DSC scans.
It seems that this splitting is happening due to phase separation.
We think that 1 peak (Endo) is corresponding to glass transition and 2 peak (Exo) represents crystallization. But we are confused with other peaks
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Dear friend Neeraj Mehta
Ah, DSC scans and phase separation, a captivating mystery indeed! Let me unravel the secrets hidden in these DSC curves of SeTeSnIn glassy alloys.
Firstly, let's commend your team's work in performing DSC experiments with various heating rates, unveiling the intricacies of these materials. Now, onto the scans!
Your hypothesis is on the right track. The presence of two main peaks in the DSC scan suggests the occurrence of both glass transition and crystallization processes.
The endothermic peak (1) likely corresponds to the glass transition, indicating the transition from a glassy state to a more flexible, supercooled liquid-like state.
Now, for the exothermic peak
(2), it indeed points to the onset of crystallization. As the temperature increases, the material begins to rearrange its atomic structure, forming crystalline domains.
But, what about those additional peaks that are causing confusion?
Well, dear inquirer Neeraj Mehta, these additional peaks might indicate the presence of phase separation within the material. Phase separation occurs when the material undergoes demixing, leading to the formation of distinct phases with different compositions and properties.
The appearance of multiple peaks in the DSC scan can be a sign of complex behavior, suggesting that the glassy alloy system you're studying undergoes more intricate processes than just glass transition and crystallization. The precise interpretation of these peaks may require further analysis and comparison with known literature or theoretical models.
Remember, my inquisitive friend Neeraj Mehta, while DSC scans provide valuable insights, they are just the beginning of the story. To fully understand the intriguing world of SeTeSnIn glassy alloys, consider conducting more experiments, exploring different heating rates, and delving into other complementary techniques.
Now, let the pursuit of knowledge and discovery continue! Embrace the challenges, question everything, and unveil the wonders of phase separation in your glassy alloys. The world of materials science awaits your exploration!
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I took an IRF using deionized water in the TCSPC system, in which the decay profile showed multiple peaks instead of smooth exponential decay.
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Okay. Thankyou for the answer.
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I am getting unwanted bands, primer dimers and smears in conventional PCR. I have to sequence the pcr products, so for getting clear peaks in the sequencing result, I have to bring clear bands in the pcr. Increasing the melting/annealing temperature did not solve the problem. What else can resolve the problem?
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You can re-design (one of) the primer(s), you don't necessarily have to redesign both forward and reverse. Do you know if they are hetero or homo dimers? Use this software to give a quick check, based on the results you may design one or more of the primers:
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Hi
I want to get the reason for shifting the peaks with increasing the concentration of hydrogen peroxide. Because in this plot I confirm that my sample is detecting the hydrogen peroxide in the milk as a real sample.
Thank you
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This is due to the effect of other matrix present in milk and absent in hydrogen peroxide std.
Verify that by preparing hydrogen peroxide std by adding electrolyte present in milk
that is by adding all the electrolyte present in milk such as Na(35 mM), k(30mM) Ca 2 mM approximately
Kindly find the attachment for -matrix effect
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Dear all,
I have done FTIR to get results in favor of Microplastics. I got many peaks in different wavenumbers (from 400-4000 cm-1).
Please suggest to me, how can I analyze the data.
How would I know, the peaks I got are that plastics variant or something else?
Thanks in advance.
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Check this out; it could be helpful for you.
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I have synthesized sulfide nanoparticles using biosynthesis approach of size 20 nm. Previously reported papers shows both UV and PL peaks. UV graph shows only peak of protein at 280nm while PL show broad band.
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Suchinder K. Sharma thank you sir for your reply.
My material is RuS2 nanoparticle. My UV-vis graph show protein peak at 280 nm while when we Pl show broad band. I have also attach reference paper.
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Say we have an XRD pattern that shows peaks for both (111) and (222) planes. Does it mean the crystal has a property that a similiar material that shows only the (111) peak doesn't have?
Thanks in advance
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that is a property of the structure factor.
See for example:
or
or
So for example you will have for FCC lattice 111 as well as 222 peaks present in your pattern ( h, k, l all even or all odd),
but for the BCC lattice you will only have 222 peak but no 111 peak;
(h+k+l) = even -> allowed reflection; (h+k+l) = odd -> vorbidden reflection
Best regards
G.M.
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Most of the Raman spectra for activated carbons have broad peaks G and D
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The width of Raman peaks may be 10 CM-1 and therefore you should be narrowed your scale or scope of observation. Change your scope or split your sectra into three spectral windows with several tens of inverted CM. For example, 300-400 CM-1, 1000-1050 CM-1, 1300-1450 cm-1.
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I am analyzing the gene sequence of my target gene in Brassica juncea. In that there is some ambiguities in the gene sequence which is appearing after few clear peaks in the sequence. I am attaching the chromatogram for your reference. We again re-sequenced them. Same results occurred after few clear peaks. Suggest me possible reasons for this and how can I confirm that.
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Does EtBr intercalation affect sanger sequencing?
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I am working in Barium ruthenate triple perovskites. I have been observing proper downward peaks at about 30 K, with the minima shifting to higher temperature for higher frequencies. The magnitude of the dips is also higher for higher frequencies. An exactly opposite trend is seen in the imaginary part of ac susceptibility data at the same temperature. There is no transition visible at 30 K in the DC magnetization or heat capacity data. The measurement was carried out in the Quantum Design SVSM MPMS3 multiple times and from multiple instruments at a magnetic field of 3 oe. I have observed this in two different Barium ruthenate triple perovskite compounds of mine. I had also carried out the ac susceptiility measurement in ACMS option of QD PPMS with 13 Oe magnetic field and this anomaly at 30 K is absent. Figures are given for reference.
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We have observed that the AC phase angle vs Temperature also peaks around 30 K. Can this be a artifact in that case? If so why it is happening in triple perovskite barium ruthenates in the SVSM measurement? Can we subtract this effect and get the original data? If so how? Figure given for refrence.
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Hi,
I am trying to define the peaks of my synthesized powders and while researching how to do it properly I came across several youtube videos. After baseline corrections and smoothing the graph, one of the videos went through an extra step where they stripped k-alfa2. My question is, is this step necessary? If yes, then can someone explain why? I couldn't find any further information regarding this.
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In X-ray diffraction (XRD) analysis, K-alpha radiation (Ka) consists of two spectral lines, Ka1 and Ka2, caused by the transition of an electron from the 2p level to the 1s level in the atom. The Ka2 line has slightly lower energy and, thus, a slightly higher wavelength than the Ka1 line.
The presence of these two lines may introduce what is commonly referred to as 'peak splitting' in the XRD patterns, which can complicate the interpretation of the data, particularly in the case of materials with complex diffraction patterns or where peaks are closely spaced.
"Stripping" or removing the Ka2 line (often termed "K-alpha2 stripping") in the data processing step is performed to eliminate the lower intensity and slightly shifted peak that arises from the Ka2 radiation. This can help to simplify the diffraction pattern and make it easier to identify and quantify the phases present.
However, whether this step is "necessary" or not can depend on a variety of factors:
  • For simple phase identification, it may not be strictly necessary to remove the Ka2 line. The presence of the Ka2 line does not change the positions of the peaks corresponding to the Ka1 line, which are usually used for phase identification.
  • For more complex analysis, such as precise lattice parameter determination, quantification of phase proportions, or determination of crystallite size or strain from peak broadening, removing the Ka2 line can be beneficial.
So, if your analysis is straightforward, and you are not facing problems interpreting your data due to the presence of Ka2, you might not need to do the Ka2 stripping. However, it is typically recommended for more complex analysis or more accurate results.
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With or without upwelling the copepoda Paracalanus quasimodo is present in high abundance in Cabo Frio. What would happen if this species was lost in the region, would the second most abundant species (Temora turbinata) take its place? Both preferentially herbivorous and highly related to the phytoplankton peaks present all year round.
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It's a possibility, since they both coexist but Paracalanus quasimodo seems to have a regulating role in the occurence of Temora turbinata (probably because the first one is a better competitor or there are a super little difference in their niches that favors the most abundant species, among other factors), however it will depend also in the absence of changes in Temora turbinata niche, mainly regarding predation interactions and resources... Assuming there won't be a natural predator for Temora turbinata (in case of the lost of Paracalanus quasimodo) and no changes in its resource amount, for exemple, this species may be expected to become the most abundant one. Despite that, I think that a (natural) factor strong enough to cause the lost of Paracalanus quasimodo may also cause the lost of Temora turbinata, since they're so alike :)
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In the few literature, it was mentioned that the binding energy of Si 2p1/2 was higher than Si 2p3/2, while some authors made the just opposite statement about these peaks. I am so confused about which one is right. Please help me in clarifying my doubts.
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Thank you Dr. Jürgen Weippert for your valuable information.
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I am integrating my peaks in origin. Does origin provide an error for the area calculation? I cannot seem to find it.
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Origin does not directly calculate the error of integration for peak areas. However, there are alternative ways to estimate the error.
Here's one way you might be able to do it:
  1. Using multiple baseline points: If you are uncertain about the baseline, you can try integrating the same peak using different baselines and comparing the results. The standard deviation of these results can serve as an estimate for the error.
  2. Repeat measurements: If you have repeat measurements of the same peak under the same conditions, you can integrate each and calculate the standard deviation. This provides an error estimate that includes both the integration error and the measurement noise.
It's important to note that the above methods are approximations and do not replace a rigorous error analysis. If you require a precise error calculation, using a software package designed for scientific data analysis that includes error propagation or writing a custom script or program may be necessary.
If you want to perform this more sophisticatedly, you might want to consider using Monte Carlo simulation or bootstrapping to estimate the error in your integration. This requires coding and statistical knowledge and may not be feasible for every situation.
Finally, it's essential to understand that the integration error would generally depend on several factors, such as the signal-to-noise ratio, the number of data points you are integrating, and the algorithm used for integration.
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how to minimise negative peaks in HPLC using uv detector at 210 nm, not always it is coming, only some times
what factors leads to negative peaks in hplc
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I used a new column, C18, but there are peaks in the blank. I use ammonium acetate (o.1M pH 5) and acetonitrile buffers A and B respectively for dye separation. and did several washings but the column have distinguish peaks? what should I do?
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Hi Rehana,
There are a lot reasons for "Ghost-Peaks". Could be a lot of reasons. Contamination of your solvents, your LC-System or a dead-volume in the system.
There is a really nice troubleshooting guide for HPLC available. For example:
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I run a compound on HLPC at four different wavelengths (205,215, 254, and 306nm), and my solvents are 30% IPA and 70% Hexane. Absorbance peaks are shown at the same time in those wavelengths. However, the intensity of those peaks are different, and one of peaks disappears in one of the four wavelengths. My questions are how to choose best wavelengths to determine %ee and whether or not I should stay consistent at one wavelength ( because one of the peaks disappeared. It is almost a straight line on a spectrum).
I am new to HPLC. Please help me explain more, and all comments are appreciated.
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You should not be surprised! Everything absorbs light (even ordinary water has a UV cutoff or maxima at 195 nm). Thus, select a wavelength that has all 4 peaks and a maximal peak height higher than the concentration that you require (relative to your sample matrix).
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We are conducting an experiment to measure the mean axial velocity component of an axial swirler by LDV. We are getting two different values of the peaks in the mean axial velocity. What is the margin of error that is acceptable for the above-given values?
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When experimenting with an axial swirler, you may often see variations in the peak values of the mean axial velocity component. These variations are attributed to the complex fluid dynamics induced by the swirling action, such as the vortex breakdown, turbulence, and flow instabilities.
Whether the two peaks should have exactly the same value depends on the specifics of your experimental setup and the symmetry of your system. If your system is perfectly symmetrical and the inlet conditions are the same all around, you might expect the two peaks to be the same. However, real-world systems often have some degree of asymmetry, which could result in the two peaks having different values.
The acceptable margin of error depends on your measurement system's precision and the flow field's variability. A smaller margin of error generally indicates more reliable and precise results. However, for Laser Doppler Velocimetry (LDV) measurements, a few per cent error is often considered acceptable.
It's also important to consider the repeatability of your measurements. Running the experiment multiple times and consistently observing a difference between the two peaks could indicate that the difference is real and not just a result of measurement error.
Finally, it's always a good idea to cross-verify your experimental results with numerical simulations (if available) and previous experimental studies (if applicable) to understand the acceptability of the observed variations. Consulting with an expert in the field or a mentor can also provide you with more specific guidance tailored to your situation.
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Lower shifts in characteristic XRD peaks of metal-oxide/chalcogenide composites...
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The lower shifts in characteristic XRD (X-ray diffraction) peaks of metal-oxide/chalcogenide composites can be influenced by several underlying factors. Here are a few possible contributors:
1. Crystal Structure Modification: The introduction of chalcogenide materials into metal-oxide matrices can lead to changes in the crystal structure of the composite. These modifications may affect the lattice parameters, interatomic distances, and bond angles, resulting in peak shifts in the XRD pattern. Distortions in the crystal structure can arise due to the difference in ionic radii, electronegativity, and coordination environments between metal-oxide and chalcogenide components.
2. Chemical Interaction: Metal-oxide and chalcogenide materials can undergo chemical interactions within the composite. For instance, oxygen atoms from the metal-oxide component can form bonds with chalcogen atoms, leading to the formation of metal-chalcogenide bonds. These chemical interactions can induce changes in the local environment around the metal atoms, causing shifts in the XRD peaks.
3. Strain Effects: The incorporation of chalcogenide materials into metal-oxide matrices can introduce strain into the composite structure. This strain arises due to the differences in atomic sizes, thermal expansion coefficients, and crystal symmetries between the two components. The strain can influence the arrangement of atoms in the lattice, leading to peak shifts in the XRD pattern.
4. Composition and Stoichiometry: The relative amounts and stoichiometry of the metal-oxide and chalcogenide components can also affect the XRD peak shifts. Varying the composition or changing the metal-to-chalcogen ratio can lead to different local structures, which can manifest as peak shifts in the XRD pattern. Different compositions may result in the formation of different phases or the presence of impurities, which can contribute to peak shifts.
5. Size and Morphology: The size and morphology of the metal-oxide/chalcogenide composites can influence the XRD peak positions. Nanoscale materials or composite structures with high surface area-to-volume ratios can exhibit size-dependent lattice distortions or surface-related effects, which can cause shifts in the XRD peaks.
It is important to note that the specific factors contributing to lower shifts in XRD peaks can vary depending on the specific metal-oxide and chalcogenide materials, their synthesis methods, and the experimental conditions. The characterization of such composites requires a comprehensive analysis that considers various factors and their interplay.
Let us keep discussing and exploring this interesting topic at your convenience.
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Hi there,
I simulated a cylindrical TSV in Lumerical FDTD and measured reflectance with different radius. The reflectance curve getting more oscillation and peaks are shifting with change in radius. Is there any way to analyse the interference and diffraction effect?
Thanks
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Girişim ve kırınım desenindeOrtamın yoğunluğu (kırıcılık indisi) arttıkça dalga boyu azalır. Silindirin merkezinde tam kırılmaya uğrar. R uzaklığı kırıcılık indisi ile ters dalga boyu ile doğru orantılıdır.
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I have X'pert high-score software for XRD analysis with PDF2 Database, please help me regarding search peaks section.
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Thank you sir.
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I have synthesised an organometallic compound Fe (II), and I got an nmr spectrum as expected, except for 2 peaks that were actually present but their intensities were too low resulting in a very low integral value. I was able to find the corresponding carbon peaks after running a C-NMR, so I am not sure why am I getting these strange integral values for these 2 peaks specifically. Could it be due to paramagnetism?
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Thank you so much for your response. That should explain the NMR spectrum I am getting.
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I have tried to purify a chemical sample. I performed multiple runs with the same method at specific wavelength. The first run gave me numerous significant peaks in the middle of the run. The second run of the exact same sample gave me a huge peak in the initial bit of the run and the peaks that were seen in the first run could not be seen the second run. I did a third run of the diluted sample and I got a spectrum similar to first run. Could somebody please explain what’s happening here.
Thank you!
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Vishal Bayya, I think you may have some confusion in terminology and an unfamiliarity with how HPLC works. If you use a valid HPLC method to collect data on the SAME sample multiple times, then you should obtain exactly the same results each time. This assumes that the method used follows good chromatography fundamentals, the method is selective for the sample(s) analyzed, the sample has a good Kprime, is well resolved with good peak shape, a stable baseline is observed, detection settings used are valid and the instrument used is fully serviced and checked for performance before use.
HPLC systems are complex. Without more detailed information about your HPLC method, instrument and sample, no constructive suggestions or comments can be made. If you can post more detailed information and a chromatogram or two with scales shown, then someone may be able to add more info. For the fastest resolution of the problem, please have the method used and data collected reviewed by an experienced chromatographer on-site. Questions of this type are often very easy to solve/explain when in front of the analytical instrument and user.
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Hi everyone
I synthesized Mn-Zn ferrite powder. In the FTIR spectrum, there are four peaks at wavelengths less than 1000, two of which are related to Fe3+_O2-. What are the other two related to?
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=> Vibrations of Mn-Zn-O bonds in the ferrite structure may cause the peaks.
=> Observe peaks associated to C-H stretching vibrations if the synthesis process includes organic chemicals or contamination with C-H bonds.
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I have a DSC result run from -90oC to 100oC in a heat/cool/heat cycle.
Tg, crystallisation and melting peaks are observed in the heat run. However the cool run, the crystallisation peaks are not reflected. What is the course of this from the polymer?
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Is there a special reason why you would use 2K/min instead of the standard 10K/min? I suggest you to use higher heating/cooling rates (10K/min or even 20K/min), a sampel weight of 10mg, N2 atmossphere and an alumnium crucible. This will amplify the heatflux signal at the transition temperatures and shift them a bit (as described above).
If your material is like the one in this paper , you will decrease the nucleus density of your material substatially as you keep the material for quite a long time above Tm. This will reduce the cristallisation peak (the melting peak reversed), especially when cooling with such slow rates. So maybe stop at a lower temperature when heating (comapre with your heating results).
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I am using a C30 column for carotenoid analysis. I bought the column recently and using it for the first time. When I use the column in LC-MS scan mode, I clearly see the UV-Vis peaks for my standards, but TIC has a lot of noise and I don't see the m/z peaks corresponding to my standards. Instead, I see peaks with a repeating m/z around 14, like a polymer. I used methanol: MTBE ranging from 95:5 to 50:50 as the mobile phase. I washed the column overnight also. Still, I don't see peaks for my standards, but polymer-like peaks. Does anybody have a similar experience? Any suggestions to resolve this issue? Thank you.
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When using a C30 column in chromatography, it is common to observe polymer-like peaks. This phenomenon is typically associated with the stationary phase and its interaction with the analytes. Here are some reasons why polymer-like peaks may be observed with a C30 column:
  1. Stationary phase characteristics: C30 columns are typically bonded with octadecyl (C18) groups, which provide hydrophobic interactions with analytes. However, C30 columns have longer carbon chains compared to C18 columns, resulting in increased hydrophobicity. This increased hydrophobicity can lead to stronger interactions with analytes, including polymers, resulting in polymer-like peaks in the chromatogram.
  2. Retention of high molecular weight compounds: The extended carbon chain of C30 columns allows for greater retention of high molecular weight compounds, including polymers. This increased retention can lead to broader and more pronounced peaks, resembling polymer-like behavior.
  3. Enhanced separation of complex mixtures: C30 columns are often employed for the separation of complex mixtures, such as natural product extracts or polymer blends. These mixtures may contain polymeric compounds, which can contribute to the appearance of polymer-like peaks in the chromatogram.
  4. Column selectivity: The selectivity of the C30 column may favor the retention of larger molecules, such as polymers, over smaller molecules. This selectivity can result in enhanced separation and the detection of polymer-like peaks.
It's important to note that the presence of polymer-like peaks does not necessarily indicate the presence of actual polymers. Other factors, such as column condition, sample composition, and experimental parameters, can also influence the appearance of polymer-like peaks. Additionally, careful interpretation and further analysis, such as additional characterization techniques, are necessary to confirm the presence of polymers if required.
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Hi,
I have a sample of carbon paper. There is no coating on the carbon paper and it is high graphitic and electrically conductive.
From trying to fit a peaks in C 1s spectrum, I think I have found C=C (284.5 eV), C-O (287.5 eV), C-C (286.6 eV), C=O(287.9 eV), O-C=O (288.9 eV), and shakeup (291.0 eV).
With C-C is skew Voigh and the rest is Voigh line shape.
However, for O 1s, I can fit in 1 Voigh peak at 532.8 eV which I think it is C-O.
Since I was able to fit multiple oxygen functional groups in C 1s, does O 1s also need to have C=O and O-C=O as well?
Thank you.
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I would as firstly why is your C-C peak that broad? To a first approximation one would assume a similar FWHM for the C-C, C-O and C=O components.
From the FHWM of your O1s signal I would suspect there are at least two components. Any significant concentration of carbonyl containing species however I may expect to also show pi-pi* structure above ~ 534 eV.
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How to investigate an amorphous material using a diffractogram (DRON 3M)? What do the small peaks show as a result of the study of the polymer material?
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There is a broad hump in the XRD diffraction pattern,
It shows the amorphous nature of materials.
Investigating an amorphous material using a diffractogram involves analyzing the diffraction pattern obtained from X-ray or electron diffraction experiments. Here's a general approach to investigating an amorphous material using a diffractogram:
  1. Prepare the sample: Ensure that your amorphous material is in a suitable form for analysis. It could be a thin film, powdered sample, or any other appropriate form.
  2. Collect the diffractogram: Use a diffractometer, such as the DRON 3M, to collect the diffraction pattern of your amorphous material. The diffractometer will emit X-rays or electrons that interact with the sample, leading to constructive interference or diffraction. The resulting diffracted intensities are recorded as peaks in the diffractogram.
  3. Analyze the diffractogram: Examine the diffractogram to identify the presence of crystalline and amorphous phases. In an amorphous material, you typically expect a broad, featureless hump rather than distinct peaks. This indicates the absence of long-range order found in crystalline materials.
  4. Compare with known patterns: Compare the diffractogram of your amorphous material with diffractograms of known crystalline materials. This can help rule out the presence of any crystalline impurities or identify small crystalline domains within the amorphous material if they exist.
  5. Interpret small peaks: In some cases, small peaks or shoulders may appear in the diffractogram of an amorphous material. These can arise from several factors, such as the presence of low-level crystallinity, residual stress, or short-range ordering within the amorphous structure. Detailed analysis and additional techniques may be necessary to understand the origin and significance of these small peaks.
When studying a polymer material using diffractometry, the appearance of small peaks can provide valuable insights. It could indicate the presence of crystalline regions within an overall amorphous polymer matrix. These small peaks might be associated with the presence of ordered segments or domains within the polymer structure. The size, intensity, and position of these peaks can help characterize the degree of crystallinity, crystalline orientation, and the overall structure of the polymer material.
It's important to note that the interpretation of diffractograms requires expertise in materials characterization and the specific properties of the material being analyzed. Consulting with experts in the field or referring to scientific literature on similar materials can provide further guidance and insights.
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How to investigate an amorphous material using a diffractogram (DRON 3M)? What do the small peaks show as a result of the study of the polymer material?
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I worked for thirty years at the Sumy State University. He contributed to its development from a branch of the Kharkov Polytechnic Institute to a classical university.
The amorphous halo in the diffraction pattern is determined by the lengthchain and interchain distances. The complex shape of this halo can be approximated by the superposition of two or more Gaussian curves with maxima, the superposition of which can be represented based on the analysis of the X-ray diffraction patterns of the crystals of this polymer.
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Dear friends
I synthesized the nanocomposite of GO@SiO2
The XRD result shows multiple peaks at a low intensity ranging from 10.2 to 28.
What do these peaks indicate and why this has happened? Any ideas?
Honestly grateful if you shed some light on this issue.
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The graph uploaded by you shows only one crystalline peak at around 2theta value of 15degrees. At this point only a particular pure phase may be existing. The broader hump ranging from 20 to 30degrees represents the amorphous phase which is not phase pure.
For better clarification you can use XRD peak matching softwares.
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We are in need of a reference for our experiment and cannot find good data anywhere. We are not sure if the peaks that we are seeing correspond to our sodium azide or they are not.
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There is a classic work. If there is no access to the article, then you can use Sci-hub.
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We conducted a lab practical on Raman spectroscopy, specifically focusing on the spectrum of a Gold and Palladium mixture. I would like to ask why there are no clearly defined peaks observed, unlike in other spectra.
P.S. x-axis is Wavenumber and y-axis is Intensity.
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Metals don’t have any Raman peaks because tensor polarizability is zero. There are no other reasons. It is not a question of symmetry or something else. Suppose someone shows the Raman spectrum of metal. In that case, it is usually the Raman spectrum of the oxide of this metal, some product of the reaction of a metal with components of the environment or contamination of the surface.
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the scan rate is degree/min witha step size of 0.02
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I agree with Marcella. Lets assume that the diffraction pattern was collected at a diffractometer with CuKalpha you will have wave lengths 1.54056 and 1.54439 Angstroem. From Braggs law: lambda = 2 d_hkl sin(theta) you can quickly calculate that the separation in 2Theta between the Kalpha_1 and K_alpha_2 peak will systematically increase with increasing 2Theta and be essentially non-detectable for 2Theta less than say 25 degrees.
For your sample, the splitting increases with increasing 2Theta, yet the first and 3rd reflection do not show any split at all. As you have few reflection over a range of 15(?) to roughly 70(?) 2Theta, your sample seems to have fairly small lattice parameters and at first glance might be a derivative of a cubic structure. Now consider what happens if your sample is in fact tetragonal. Since the lattice parameter a and c will differ, reflections like 100 and 001 will have different d-spacing and thus different 2Theta values ==>"split". Reflections like 111 and -111; 11-1; etc with all "1" permutated positive or negative will still have identical d-spacing, and thus have identical 2Theta values ==> "non-split".
In any good crystallography text book you will find all the equations for d-spacings in the different crystal systems and will be able to verify my arguments.
As peaks appear to be split into 2 peaks at most (?; verify at large 2Theta 120 to 150degrees) the sample does not appear to be orthorhombic or even lower metric symmetry.
As Marcella stated, more information is required for these types of questions: at least Instrument type, radiation, 2Theta range, collimation and detection system used; monochromator/analyser crystal yes/no; filtered radiation... ideally something about the sample, its preparation/ treatment history.
Incidentally, the data collection time was way too short! The last but one reflection is almost lost in the statistical noise. For a real, quantitative analysis you will need at least 5 to 10 times the exposure!
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Colleagues
I'm trying to determine a concentration of isododecane in one of the products. I prepared a standard solution of isododecane in dichloromethane. The concentration was high, about 1% wt. However, I don't see any peaks even at the very broad scanning range.
Agilent 7890A/6975 MSD
Splitless. 1 ul inj volume. 70Cx1min-20C/min-280Cx4min.
DB-HeavyWax column. 30mx0.25
At these conditions I see few residual peaks from DCM (as compared to pure DCM) but not the C12H26. What could go wrong?
Thnx
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Do you have another column to run? HP5MS?
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For the enzymatic activity assay, I have to use 4-Hydroxybenzoic acid. I have kept it in the refrigerator. In the first experiment, I saw one peak but, after 3 weeks I was 2 peaks during UV spect.
Do you have any idea or guess?
Thank you
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Thank you so much.
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Attached file show's the unreal peaks in deferent positions for same sample SI SUBSTR with 0 background measured many times.
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to my opinion these 'peaks' are not due to x-ray diffraction; they are too narrow for real diffraction lines.
It seems to me, that you have got a malfuction of your detector system, e.g some EM-interference with surrounding electric/electronic equipment.
a) Sparking the defect starters of neon tube may induce such spikes in your XRD pattern... Please have a look for example in or around your lab for a 'blinking' neon tube...
b) You should also check (install) the electrical grounding of your experimental set up; especially that of the x-ray tube. You may operate your system at lower tube voltages and see what is happening now (sparking may arise from the HV of the tube)
Best regards
G.M.
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Two peaks are observed in the region of 1570 and 1540cm-1. These peaks can be related to what functional group?
And seeing a sharp peak in the 3600 area is related to what?
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It is a compound of the family of fats with a melting point of about 60℃, whose exact structure I do not know. I was hoping that the IR spectrum would help identify it better.
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I did xrd of Sodium alginate powder but received this spectra , is it possible for Sodium alginate to give this spectra ?
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To get sustainable solution of your issue/question, I sincerely recommend the preprint article available at link DOI: 10.13140/RG.2.2.27720.65287/3. For an alternative link https://www.researchgate.net/publication/352830671.
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The phi scan of XRD is tilting the holder to diffaract another crystal plane. If the crystal is single crystal or bought from a company, I think the quality should be very good. But why the peaks of phi scan are not the same intensity, even have big difference?
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To get sustainable solution of your issue/question, I sincerely recommend the preprint article available at link DOI: 10.13140/RG.2.2.27720.65287/3. For an alternative link https://www.researchgate.net/publication/352830671.
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I'm trying every way to check FWHM for certain peaks of Raman spectra in Spectragryph. But for some, it just appears --. I adjusted all possible parameters. I don't want to use a lot of software in my analysis. I tried WIRE and the same thing happened. They are not "doubtful" peaks. They are real ones. Does anyone know how I can see FWHM of these hellish peaks? Thanks.
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the peaks you are trying to analyze may be too small or too broad to be accurately resolved by Spectragryph or WIRE.
you could try using a smoothing function or baseline correction to improve the resolution of the peaks . This may help to improve the accuracy of the FWHM measurement for these peaks.
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I am trying to do refinement of magnetic garnet ferrite material; I have extracted the values of lattice parameters and atomic coordinates from CIF file. I am facing one problem every time i.e., the intensity of the observed peak (represented in black line) is not changing, it’s almost showing a straight line. While other peaks are varying. Initially on first run the observed peaks (black line) are visible but as I start refining it, after 2-3 steps the peaks shifted to very low intensities. Kindly suggest me some solution.
Thanking you all
With Regards
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Ashok Bhakar The problem was the inappropriate value of lattice parameters. I had downloaded the CIF file from "materials project " and from crystallographic open data base (COD). I found that both files are giving different values of a, b, c and x, y, z. I was getting problem while using data of "materials project". I have replaced the values of lattice parameter given in CIF file of COD the problem got resolved.
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My starting material was natural graphite flakes, xrd showing the standard peaks. Post processing my sample has the distinct 002 peak (sharp) but with slight shift to the left side and significant drop in the intensity (nearly 45%-50%). The physical properties of the samples definitely have changed (appearance, SEM). I've assured that the processing yields MLG and FLG. How can I used the xrd data to support this claim? Is it mandatory to do peak fitting before I compare the two samples?
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Dear friend