Science topic

Mice - Science topic

Explore the latest questions and answers in Mice, and find Mice experts.
Questions related to Mice
  • asked a question related to Mice
Question
2 answers
We want to study the effect of High Fat Diet in rats.......
Relevant answer
Answer
Sure, to create high-fat diet mice or rat in the lab, you don't have to buy them from a vendor. However, you need to ensure the composition of the high-fat diet provided. For example, a standard chow diet (Control; 10% energy from lipids of soybean oil, 76% from carbohydrate, and 14% from protein; 3.8 kcal/g; n = 40), and a high-fat diet (HF; 55% energy from lipids of pork lard and soybean oil, 31% from carbohydrate, and 14% from protein; 5.2 kcal/g; n = 40)." I cite this composition from de Bem GF, Costa CA, Santos IB, Cristino Cordeiro VdS, de Carvalho LCRM, de Souza MAV, et al. (2018) Antidiabetic effect of Euterpe oleracea Mart. (açaí) extract and exercise training on high-fat diet and streptozotocin-induced diabetic rats: A positive interaction. PLoS ONE 13(6): e0199207. https://doi.org/10.1371/journal.pone.0199207.
  • asked a question related to Mice
Question
4 answers
Hi,
I'm working on the immunity of tumor. I injected tumor cells into the mice subcutaneously. After harvesting the tumor, I used percoll and isolated immune cells. Then I added trypan blue and counted cells using a cell counting chamber before flow cytometry staining.
I found in most of the papers, they just said "Count cells for staining". But they didn't say count which kind of cells. Because I saw there were different type of cells in the microscope.
Do I need to count all living cells, no matter how different the shape they are. Or do I just count one specific cell?
Many thanks.
Relevant answer
Answer
If this is for flow cytometry staining, count all the cells! Disregard any difference in cell type.
  • asked a question related to Mice
Question
4 answers
I'm trying to culture hematopoietic stem cells of mice, referring to an article, in which fibronectin-coated plates are used. Since pre-coated plates are expensive, I'm thinking about coating plates by myself.
I found that relatively wide range of amount is on the instruction manuals, such as, concentration of "5-30 ug/ml, 50 ug/ml", amout of "1-5 ug/cm2, 5 ug/m2", or sometimes "depends on the type of the cells". I searched on the internet for the correct answer, but I haven't found one.
Does anyone know the answer?
Relevant answer
Answer
Young Zhang Hello there
How should I prepare the stock concentration of commercially purchased lyophilised fibronectin? The instructions for use do not say anything clear. What should I reconstitute it with first and what should be the stock concentration ratio?
  • asked a question related to Mice
Question
1 answer
Hello
I am planning to deliver a cy5-labeled drug to mice, and then check its distribution in different organs. In case I wish to preserve the tissues for later research, will fixation (using 4% formaldehyde) damage the fluorescent signal of the cy5?
Does somebody have any experience with cy5 and fixation?
thanks in advance.
Relevant answer
Answer
It is a spectrum view florescent dye that uses wavelengths and laser lines emissions i doubt if it can be fixed or if it will be visible in a fixed tissue. I advise u keep the pictures or recorded charts
  • asked a question related to Mice
Question
4 answers
I have isolated cortical neurons from mouse pups ( day1) and seeded on poly d lysine coated wells of 24 well plated (120000cells/well) and cultured in a medium composed of Neurobasal A, Glutamax, pen/strep and B27. After 2 DIV the cells appears like neurospheres ans they started to show processes and get connected to each other. why neurosphere like structures appear in primary cortical neuronal culture?
Relevant answer
Answer
I found the same issue in my neuron culture. How did you solve it finally, Divya?@Divya Vipin Menton
  • asked a question related to Mice
Question
1 answer
just line, company etc
Relevant answer
Answer
  • asked a question related to Mice
Question
4 answers
Hello,
I'm having purity issues with my DNA that I extract from mice tails. Here's the protocol I use . I run a PCR after that to identify knock out mice, but my gel had a lot of smearing. so i decided to do ethanol precipitation and it still isn't great, as you can see in the file below.
I really am not sure how to approach this, the PCR has to be definitive because subsequent experiments depend on the KO genotype.
I would appreciate any suggestion, because i can't keep asking for tail cuts :(
Relevant answer
Answer
20ng is good but it would be good to know the od260/280 ratio as a check of the quality of the dna
  • asked a question related to Mice
Question
1 answer
We are doing primary osteoblast culture from mouse calvaria, but we always get those very big cells as shown in the red cycle of the picture, which takes a lot of areas and blocks the real osteoblasts to grow. Does anyone know what is those cells and how to get rid of them from the beginning? Thanks a lot!
Relevant answer
Answer
I can't see them very well, but it looks like they have multiple nuclei. In this case they are osteoclasts (which would be logical, because you'll always have some monocytes precursors in the calvaria).
From my experience, they don't interfere with osteoblast amplification and they have a short life span - 5 days maximum.
  • asked a question related to Mice
Question
1 answer
I injected AAV through mouse tail vein, but after one week when I sacrifice the mouse and extract the protein from heart, liver, spleen, lung, kidney and small intestine, I didn't detect the protein i injected. Is there something wrong? How to make sure my injection is successful?
Relevant answer
Answer
What is the turnover of your protein in vivo?
  • asked a question related to Mice
Question
1 answer
We need to use Doxycicline I.P injections in an immunosuppresed mouse model, but when I prepare the solution the pH drops (both in water and PBS), being unsuitable to use in mice.
Do someone can tell me which buffer use?
Thank you
Relevant answer
Answer
there are you tube videos of tail vein injections, how to inject, May be your injection procedure is not good at this moment.
  • asked a question related to Mice
Question
4 answers
I am seeking guidance on dissolving hydrochlorothiazide (HCTZ) for intraperitoneal administration to mice. HCTZ readily dissolves in dimethyl sulfoxide (DMSO), but I have encountered precipitation issues when attempting to dilute it with saline or Hank's Balanced Salt Solution (HBSS). Are there alternative methods or solvents that can facilitate the dissolution of HCTZ while maintaining its suitability for intraperitoneal administration in mice? Any insights or recommendations would be greatly appreciated. Thank
Relevant answer
Answer
Kosuke Osawa I used BD insulin syringes 30G 300ul volume (REF 328431).
  • asked a question related to Mice
Question
5 answers
Usually I culture mouse T cell with RPMI media and the mouse EC cell lines(C166---adherent cells) always culture with DMEM. I want to establish a in-vitro transendothelial migration model that mouse T cells migrate through C166 monolayer. So I want to know if DMEM medium affect mouse T cells activity and function. Could I use DMEM medium to culture mouse T cells in order to adapt the DMEM culture environment .
Relevant answer
Answer
One thing that I can tell is that you can´t cultivate EC with RPMI. I did it in the co-culture and lost my cells.
  • asked a question related to Mice
Question
2 answers
Hi, im looking for mice osteoblast cell line ( not MC3T3) for in vitro work. any suggestions?
Relevant answer
Answer
Completely agree with the first recommandation of Said Wahif, but beware that what is said about UMR-106 is at least incorrect in 3 aspects of the anwer:
1) UMR-106 is not from mouse but from rat.
2) It is not from bone marrow but from bone.
3) Its not from a mouse model of OI but as described in the original reference (see links to the Cellosaurus entry for all info): "An osteogenic sarcoma induced in Sprague-Dawley rats by serial injections of 32P(18) has been maintained for several years of transplantation passage within the same strain of rats". So its from a radiation induced osteosarcoma.
Best regards
Amos Bairoch
  • asked a question related to Mice
Question
3 answers
I am wondering if I can make a genetically modified mouse to have breast cancer. I saw that mouse model named MMTV-ErbB2 can spontaneously develop breast cancer, but is breeding with these mice the only way to obtain breast cancer mice model with the gene modification of my interest?
Are there any easier ways like just administering some chemicals?
Relevant answer
Answer
Ali Saeed Al-Chalabi Thank you so much for your quick response! I will see if I can get cell suspensions of breast cancer.
  • asked a question related to Mice
Question
1 answer
Hello,
i have to transport some primary mouse hepatocytes in some 6 wells plates at 37 degrees celsius ideally. It's going to be a 45 min drive approximately.
Does anyone have any ideas or recommendations about how to transport the plates without inflicting lot of damages to the cells ?
Relevant answer
Answer
You may refer to the paper attached below for transporting cell lines in 6-well plate using an agarose gel-based method. The authors claim that this is a convenient method simplifying the transportation of live cells for long distance and it can maintain cells in good viability for several days.
This agarose-medium gel-based method is a useful and convenient way for transporting cells between cities and countries. The authors recommend that the time for cells transported by this method should be in 3 days (no more than 5 days) after the cells are covered with the agarose-medium gel.
Best.
  • asked a question related to Mice
Question
1 answer
ANIMAL BEHAVIOR AND ANIMAL PLAY
Animals have their own behaviors, and their special ways of playing. Compare and contrast the behaviors and play of canines, felines, equines, primates, etc.
More specifically compare and contrast the behaviors and play of ants, apes, bees, birds, cats, chickens, chimps, cows, dogs, dolphins, donkeys, ducks, elephants, fish, horses, lizards, mice, sea otters, and turtles.
Check out this PowerPoint about “Animal Play,” and then comment on what messages can be communicated by animals, and how these messages are communicated.
Relevant answer
Answer
Compare and contrast "Animal Play" with "Human Play."
  • asked a question related to Mice
Question
4 answers
My study focuses on developing a mouse model for the type II diabetes, narrowing in on a condition resembling chronic, late-stage diabetes. As such, blood glucose levels would need to be measured consistently over the course of the 16-week experimental period. I will be using C57BL/6 mice. With the welfare of the animals at the fore, I would like to know if it is safe to perform fasting blood glucose tests on a weekly basis. Will it overstress the animals, and perhaps serve as a confound the overall development of the condition?
Relevant answer
Answer
congratulation
  • asked a question related to Mice
Question
4 answers
I need to get cerebrospinal fluid from freely moving/behaving mice without stressing them. How would you do that?
Relevant answer
Answer
A novel chronic dural port platform for continuous collection of cerebrospinal fluid and intrathecal drug delivery in free-moving mice ( )
I hope this work can help you!
  • asked a question related to Mice
Question
5 answers
I'm experimenting on Swiss Albino mice and my goal is to make them obese. I don't know if there are any criteria to evaluate whether I have successfully grown fat or not? I read a few articles, they said that the weight of the fat was 40% higher than the control as success. Pls help me and thanks a lot.
Relevant answer
Answer
Ofcourse, there are standardized protocols for raising obese and diabetic mice in research settings. These protocols ensure consistent conditions for experiments and ethical treatment of animals. Specific guidelines may vary based on the research institution and the purpose of the study, but they typically include controlled diets, monitoring of weight and glucose levels, and appropriate veterinary care. Researchers adhere to these standards to maintain the health and well-being of the mice while conducting experiments related to obesity and diabetes.
  • asked a question related to Mice
Question
3 answers
I am interested in a mouse model of a controlled cortical impact that would mimic sports concussions by creating a mild TBI without any incisions, but I'd like to try and create specific coordinates and target specific brain areas. I figured I could use the eye as a landmark to find Bregma, but I can't seem to find an atlas for the head like you'd find for the brain or skull. Is there a reference for the average mouse skull size with measurements like the mouse brain atlas, or another effective landmark for locating Bregma without creating an incision?
Relevant answer
Answer
Thanks for your responses, Louis-Charles Béland and Demos Kynigopoulos. You are both correct in assuming I meant finding Bregma without making an incision. I clarified the wording of my question to reflect that, so hopefully it makes a little more sense. Those are both great suggestions and I'll take those into consideration as potential options.
  • asked a question related to Mice
Question
2 answers
How to prevent the death of mice after streptozotocin injection in the cerebral ventricles of mice for Alzheimer's disease induce?
Relevant answer
Answer
Thank you for your answer, it was a useful help.
  • asked a question related to Mice
Question
1 answer
I need to isolate live bacteria from mouse tissues. I have the "FastPrep-24™ 5G bead beating grinder and lysis system" and I will be using sterile tubes pre-filled with 3.0mm Zirconium beads. Tissue homogenates will be plated and assayed for bacteria growth. Has anyone done this and perhaps have a protocol or suggestions? I am concerned about bead beater settings, since I would not want to damage the bacteria with settings that might be too harsh.
Thank you!
Relevant answer
Answer
To use a bead beater to isolate live bacteria from mouse tissues, you will need the following materials:
  • Mouse tissue
  • Bead beating tubes (pre-filled with beads)
  • Bead beater
  • Sterile phosphate-buffered saline (PBS)
  • Sterile culture plates
Protocol:
  1. Prepare the mouse tissue. Dissect the mouse tissue of interest and place it in a sterile petri dish.
  2. Weigh the mouse tissue. Weigh the mouse tissue to determine how much PBS to add. A good rule of thumb is to add 10 mL of PBS per gram of tissue.
  3. Add PBS to the bead beating tube. Add the appropriate amount of PBS to the bead beating tube.
  4. Transfer the mouse tissue to the bead beating tube. Use sterile forceps to transfer the mouse tissue to the bead beating tube.
  5. Secure the bead beating tube. Tightly secure the bead beating tube to the bead beater.
  6. Homogenize the tissue. Homogenize the tissue for the recommended amount of time. This will vary depending on the bead beater and the type of tissue being homogenized.
  7. Transfer the homogenate to a sterile culture plate. Use a sterile pipette to transfer the homogenate to a sterile culture plate.
  8. Spread the homogenate on the culture plate. Use a sterile spreader to spread the homogenate evenly on the culture plate.
  9. Incubate the culture plate. Incubate the culture plate at the appropriate temperature for the bacteria you are trying to isolate.
Once the culture plate has been incubated, you can count the colony forming units (CFUs) to determine the number of live bacteria in the mouse tissue.
Tips:
  • To prevent cross-contamination, be sure to sterilize all of your equipment before beginning the procedure.
  • If you are not going to use the homogenate immediately, you can store it at -80°C.
  • When plating the homogenate, be sure to spread it thinly and evenly on the culture plate. This will help to prevent the overgrowth of colonies.
  • Incubate the culture plate at the appropriate temperature for the bacteria you are trying to isolate. Most bacteria grow well at 37°C.
Isolating live bacteria from mouse tissues is a relatively simple procedure. By using a bead beater, you can quickly and efficiently disrupt the tissue and release the bacteria. Once the bacteria have been released, they can be plated on culture plates and grown for further analysis.
  • asked a question related to Mice
Question
3 answers
Hello, I am now doing the HE staining of mouse skin paraffin section, but my slices always looks like not being well stained by eosin. I tried different staining time and use the dyes from different company, but the result always the same.
The skin was cut at 6µm,and before deparaffinization I put the slide in the oven at 56°C for 1 hour. This is my staining protocol: 2x7min xylene, 2x10min 100% ethanol, 5min 90% ethanol, 5min 70% ethanol, 5min ddwater. 10min hematoxylin, 2sec 0.1% HCl, 5min tap water, 3min eosin, 10sec tap water, 10sec ddwater, 10sec 70% ethanol.
The dermis seems different form others staining result, and I don't know why.
Please help me! Thanks!
The first one is my staining picture and the second is the brain HE staining using the same protocol. The last one is HE staining from the aticle "Protective Effect of Chitin Urocanate Nanofibers against Ultraviolet Radiation" .
Relevant answer
Answer
I think your sections might be a bit too thick, which is why the epidermis and sweat gland structures look so dark. Try sectioning at 4 um, with a sharp blade.
  • asked a question related to Mice
Question
2 answers
We are trying to perform mouse liver biliary tree(bile duct) staining, is there a detailed protocol to follow? Any help is highly appreciated.
Warm Regards,
Liang
Relevant answer
Answer
Thanks Mamdouh. This is very helpful.
  • asked a question related to Mice
Question
1 answer
Hi, I am currently trying to isolate immune cells from mouse colon tissue for my project. For this purpose, I am using a protocol which includes ;
- Surgical removal of the colon tissue from mouse - Cleaning the tissue from surrounding fat and feces - Cutting the colon longitudinally and into small pieces (~4, 5 mm) - Incubating with 2 mM EDTA at 37C with mild shaking for 15 min x2 (removal of EDTA in between) - Washing the pieces in a strainer with 1X PBS x4 - Cutting the colon tissue into smaller pieces with a scissor - Digestion for 1 hour at 37C with digestion mix (1mg/mL Collegenase II, 2U/mL Dispase II, 80ug/mL DNAse I in DMEM with Glutamax) - 20 sec vortex - Quenching the rxn with 2 mM EDTA and washing with PBS/2%FCS - 10 sec vortex - Filtration (40 um) into new falcon to remove tissue - Centrifugation for 7 min, 1500 rpm.
At the end of this protocol, I always encounter formation of a slimy, white, powder like precipitate in some of my samples. These samples take quite some time to filter through 40 um filters and at the end, usually no cell pellet was observed in these tubes. I have previously tried to optimize the protocol by changing the concentration of digestion mix, digestion time, EDTA incubation time and washing the tissues after EDTA incubation with several ways, however none of my attempts stopped the formation of this precipitate. It appears to be happening randomly between my samples in every experiment irrespective of the genotype, treatment etc.
I couldn´t be able to pinpoint the source of error in my procedure, so my intention is to get the opinion of you, fellow scientists. Is there any other people present in this platform that also works with a similar protocol and maybe encounter similar problems? I am open to further discussion and suggestions.
Relevant answer
Answer
I can give you my opinion, although I am not an expert in the field. It can't be both slimy and powder... If its slimy my best guess is DNA so try to increase the DNase. If its powder, perhaps its calcium salts, so you can increase the EDTA or add a salt- cell cleaning solution. Do you have o picture of the precipitate?
  • asked a question related to Mice
Question
3 answers
It just came cross my mind - if matrigel is derived from mice, would there be an effect on the human organoids that we are culturing/generating? If so, how can we measure the changes? is there a human version of matrigel?
Relevant answer
Answer
Hello Yiling Guo
Matrigel has several disadvantages:
1. It may cause batch-to-batch variation in cultured organoids.
2. Given its origin, there is also a potential risk of transmission of animal pathogens.
3. Matrigel is primarily composed of tumor ECM components which is substantially different from that of normal tissues. The tumor ECM-based Matrigel may not provide the tissue-specific microenvironment for the organoids.
4. Matrigel is originated from mouse cells which will hamper its use in human clinical transplantation due to potential immunogenicity.
Given these limitations, you may want to look at Matrigel-independent organoid culture methods. You may want to refer to the article attached below.
Best.
  • asked a question related to Mice
Question
1 answer
hello everyone,
I want to know the gene function in human cells. For example, I input some cell, and the datanase can tell me the function of genes in the cell, especially the role of positive regulation or negative regulation, like https://www.informatics.jax.org/ (mouse). I'm not sure if I made it clear, thank you so much for helping me.
Relevant answer
Answer
Maybe you can try BioGPS, “A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function.” Please refer http://biogps.org/#goto=welcome for details.
  • asked a question related to Mice
Question
8 answers
We have injected GFP and td-tomato viral tracing injection in the mice brains to see axonal projections, and we are using tertiary butyl alcohol instead of ethanol for the dehydration process as well as xylene. But we are losing our fluorescence.
What we can do please suggest any other solution or any procedure.
So please, Thank you in advance.
I hope this will help us.
Note: We don't have cryostat with us.
Relevant answer
Answer
I am fixing them in PFA only, but we used a paraffin embedding system to take sections. Post-fixing in PFA we have to dehydrate the tissue and incorporate wax into it. For sectioning, we can't use PFA fixing alone.
  • asked a question related to Mice
Question
3 answers
Hi!
I have IP ed HA tag and Mouse IgG in two conditions of HUH7 cells. How come I see a band in the Mouse IgG lane around 78KD exactly the molecular weight of my desired protein that is HA tagged (even though I have tried an antibody for my western blot that is Rabbit so that I won't get cross reaction from same species that I did the IP with(which was mouse)). I don't see heavy and light chains.
Thanks everyone!
Relevant answer
Answer
If your anitibody isbcoupled to the resin by a thiolester bind or any other reducable bond,l and you're eluting your protein with a reducing agent containing buffer like mercaptoethanol/ dithiothreitol/TCEP that eould uncouple the antibody from the resin. If you are using a lot of resin/antibody that mightbe increasing your background with the rabit secondary. Also your are probing stripping and reprobing try using the rabit before the mouse incase your stripping is not working well.
  • asked a question related to Mice
Question
1 answer
I'm gonna do IF in old mouse frozen sections to detect the pP53 and P21 level. The tissues were fixed by 4%PFA at RT for 30 min, 20um thick. The 2 antibodies are made from mouse, whcih caused the background signal is strong and there seemed no positive cell detected. I tested the antibodies in cell line by adding etoposide( to induce senescence).Both of them worked well. So any suggestions to help stain in the frozen sections? Many thanks!
Relevant answer
Answer
Several solutions: 1. another 2 antibodies; 2. apply regents to get rid of autofluorescence; 3. wash for longer time after staining with antibodies.
  • asked a question related to Mice
Question
10 answers
I got this plasmid from Addgene (https://www.addgene.org/83481/) that I want to put into some mouse immortalized myeloid cells.
The basticidin resistance gene is driven by human phosphoglycerate kinase 1 promoter (hPGK). Will this be a problem?
Relevant answer
Answer
In Kang Jim Reed Have you resolved this? I’m having the same issue
  • asked a question related to Mice
Question
3 answers
I have nhe6 KO mice, confirmed via genotyping from their tail clips. I isolated BAT, iWAT, and gWAT from three controls and three KO mice. RNA isolation followed by cDNA preparation was performed from these isolated tissues. On running qPCR, I expected low ct values (high nhe6 expression) in controls and high ct values or undetermined ct values (may be?) for KO samples. However, shockingly! I got similar ct values (30-32) for both- controls and KO.
The questions here is-
Is it correct to perform qPCR on genomic knockouts? AND WHY?
Relevant answer
Answer
Alternatively, you might've included _too much_ cDNA in the reaction (cDNA synthesis buffer is inhibitory to PCR, so you want to dilute your cDNA after synthesis, ideally).
But like Ciaran Daly says, Cq values of 30-32 are far too high to be trustworthy: these correspond to countable numbers of target molecules (like, 5-20 targets per well) and are thus very susceptible to stochastic noise, mispriming and just general PCR shenanigans.
It would be helpful if you could provide more detail about your entire experimental set-up, since there are lots of places where things can go wrong.
How are you isolating the RNA?
What are your yields?
Are you QCing your RNA afterwards, and how?
What are your 260/280 values, and more importantly, your 260/230 ratios?
How much RNA are you using for cDNA synthesis?
How are you priming (oligodT, random priming, or both)?
Are you diluting your cDNA afterward?
How much cDNA are you using per well, assuming 1:1 conversion?
  • asked a question related to Mice
Question
3 answers
My study aims at developing an animal model for type II diabetes. I don’t quite understand the power calculation, particularly in regards to the values I would substitute into the equation, as it relates to the development of the animal model, and not the treatment of an already developed model. How can I go about calculating the number of animals I require for my study to develop this model?
Keep these things in mind:
- the proposed model is for type II diabetes in combination with its microvascular complications
- I currently have two STZ dosage mechanisms: multiple low dose (MLD X 5 days) and single moderate dose (SMD)
- for the SMD and MLD groups, there are 3 doses per group, as well as 2 controls, for a total of 10 overall groups (6 subgroups will be treated with STZ and 4 control groups)
- in order to validate the disorder and the associated complications, I will be euthanising 3 animals from each experimental group, fortnightly for analysis.
Relevant answer
Answer
The new site for sample size calculation is <https://sample-size.net/>. Unfortunately, there is no option for parallel group design, so I was unable to input the parameters you suggested with the corresponding figures in your answer. Can you kindly assist me?
  • asked a question related to Mice
Question
1 answer
I'm trying to measure OVA-specific IgE with a DIY ELISA, with an OVA coating. The issue I am facing is that since in the model I am using OVA-specific IgGs are produced in much higher concentrations than IgE, low dilutions of the serum get lower signal than higher dilutions. This reduces my signal significantly compared to my standard, which works great.
Would pre-incubating the sera on anti-IgG-coated plates help reduce that signal? And if so, has anybody done that before?
Thanks!
Relevant answer
Answer
Deplete the serum using protein A to get rid of IgG prior to the ELISA app. Collect the flow-through fraction resulting from the spin column or cartridge and dilute with the proper buffer and volume...
  • asked a question related to Mice
Question
3 answers
I am looking for VEGF A expression in mice placental lysates. However, according to the company (I use primary antibody from Abcam), I was supposed to see band 27kDa, however, I see 37kDa. They have shown 3 bands in mouse cell lines (27, 37 and 50 kDa). However, they say 27 kDa is a VEGF A protein. Could anybody please explain?
Relevant answer
Answer
You are seeing a band 37kDa instead of 27kDa because VEGF-A is glycosylated.
VEGF-A is known as a heavily glycosylated protein. The high molecular weight band (37kDa) that you see is the dimeric form (glycosylated) of the VEGF-A monomer. There is also a trimeric form (50kDa) of VEGF-A which is also heavily glycosylated.
Best.
  • asked a question related to Mice
Question
1 answer
we have done a PCR for adhesion molecules comparing lung tissue from healthy mice to inflamed mice. surprisingly, the RNA expression in the inflamed mice is much lower than the healthy ones. I don't know how to interpret this, we are ruling out technical problems. Has anyone seen this before?
Relevant answer
Answer
Did you normalize the data by comparing to a reference/housekeeping gene?
Not all gene expression is regulated primarily at the transcript level. Can you measure protein abundance?
  • asked a question related to Mice
Question
2 answers
I am trying to find out parasite burden of spleen in Leishmania donovani infected mice using limiting dilution assay. I have plated in serial dilution and in many replicates but now I am confused as to how I can analyze the data.
Can someone please help?
Relevant answer
Answer
I have tried 8 replicates of each of the 24 (1/5th) serial dilutions made from 1mg tissue/mL in 20% (FBS) Schneider medium. Initial infection in my animals was done with a low quantity of Leishmania donovani with only 1000 parasites and animals were dissected on the 6th week post-infection. Dilution culture was maintained until 21 days in continuous shaking at 22-24oC and yet no visual promastigotes were observed. only very tiny dot-like structures were observed with significant movements. However, the culture was not contaminated. I need to establish the limiting dilution method for a certain experiment and I don't know what else to do to make the transformation happen. Can someone please help?
  • asked a question related to Mice
Question
3 answers
Hi,
While we are doing genotyping of mice, we observed non-specific band which has main band size.
So we had 3 negative controls : (1) Taq only (2) Taq + primer (3) Taq +gDNA
Surprisingly, we got a 300bp~ band in (2) Taq + primer sample.
Is this a primer contamination?
Is it possible to have a 300bp~ band because of primer contamination?
Thanks in advance.
Sohee
Relevant answer
Answer
At this size, primer dimer is very unlikely. Seems like your primers picked up something with the enzyme - 16S primers eg could easily do that. Can try to run less cycles and/or run a blast search on your primers
  • asked a question related to Mice
Question
3 answers
Mice behavior after Tamoxifen injection: what does it look like?
Dear community, I will be very grateful for any clues about the issue. I was stacked with problems regarding mice's behavior immediately after an intraperitoenal injection of Tamoxifen.
Mice's behavior changes drastically after injection. They become much less active, sometimes with no movement at all; their eyes are squinted; some of them move only a couple of steps even after being touched by the experimenter. One interesting fact is that they sit separately, while normal mice are trying to get together. I observe such conditions even 24 hours after injection. In my previous experiment, I observed the same behavior after injection, and 13 of the 18 mice died. That was so frustrating. In my recent experiment, I used a completely new reagent, and I was extremely careful with the preparation of tamoxifen, including dosage and injection. I have even slightly reduced the injected amount, just by 0.005-0.01 ml. But still, the behavioral changes looked exactly the same. I am really perplexed because MANY articles use this concentration and dosage, and they refer to it as safe! One1 of the articles even declares that "Over several years, we observed a mortality rate of 3.7% after three injections of TAM (n = 4.080, adult"mice)" — they injected 100 mg/ 1 kg for three consecutive days! I saw the articles about the influence of tamoxifen on some behaviors (anxiety-like, depression-like, locomotion, etc.), but I cannot find a detailed description of the behavioral phenotype immediately (during 48 hrs) after injection.
If anyone can share their experience, I will be grateful!
Short information:
  • Mice: C57BL/6, 11 weeks old, 26–30 g.
  • Purpose: initiate targeted recombination in the active population of neurons in the brain. The cocktail of viruses was delivered to the brain; after four weeks of recovering tamoxifen was injected
  • Tamoxifen: fresh solution was prepared before every injection from tamoxifen powder (Sigma), dissolved in corn oil at 60 degrees for at least 2 hrs, shaked in a shaker every 10 min, covered by foil. The solution was completely transparent before injection.
  • Concentration: 20 mg/1 mL of corn oil
  • Dosage: 100 mg/ 1 kg of weight, about 2-3 mg per animal
  • Injection: peritoneal, under slight isofluran anesthesia to reduce mice movement during injection; with 1 mL surynge and 27 G needle
Relevant answer
Answer
Glad that you've solved the problem, and thanks for the detailed report, this is very valuable information.
  • asked a question related to Mice
Question
1 answer
I need to stain mouse brain sections with c-fos and phospo s6 (which is rabbit). I'm looking for a c-fos ab (mouse) because I don't want to perform a multiple immunolabeling with primary ab originating from the same host species.
Relevant answer
Answer
If a rat antibody would also be possible then try 226017 from Synaptic Systems we use it with Invitrogens Goat anti-rat A21247 both at 1:1000 with good success
  • asked a question related to Mice
Question
5 answers
Hi, I am isolating primary mouse hepatocyte. The problem I am facing is sometimes I am getting very low viable cells (<50%). Sometimes I am getting really good number of viable cells (>80%). The problem is particularly occuring with one specific strain so this could be strain specific. But few other things that I would like to include. Whenever I am getting low cell viability although the liver gets pale in washing step and looks like digested in successive digestion step, but the liver does not inflate during the start of perfusion. Is it happening due to this? When I am getting good viable cells the liver generally inflate within seconds of perfusion. And also the liver looks clumpy even after it looks digested. But the clumpiness is not seen when I am getting good viable cells. Although I observed this thing in a particular strain I may not be right as well. If anything I am doing wrong. Please suggest.
Relevant answer
Answer
In my humble opinion, another possibility for this scenario depends on the way the cells were extracted from the liver sample.
Usually, cells obtained from a liver well perfused with collagenase (perfusion buffer) yield a good amount of viable cells if the resected liver is gently scraped.
Nevertheless, most of the research now stresses mincing the liver and exposing the liver to collagenase for prolonged periods to obtain cells. This practice has resulted in reduced viability of cells.
  • asked a question related to Mice
Question
1 answer
I'm not sure why I'm getting a lot of non-specific staining from a rabbit secondary only control DAB stain. It looks like the pattern of staining is picking up blood vessels from my guess.
I quench using 1.5% H2O2 diluted in MeOH for 30 mins followed by permeabilization and blocking with 10% horse serum and 3% triton. Overnight incubation of antibody in 2% horse serum and 3% triton followed by incubation of secondary antibody for an hour and then ABC solution for 30min. All of these steps include 3x 5min washes in PBS in-between.
I perfuse the mice with PBS and then 4% PFA followed by incubation of PFA overnight. 30% sucrose is added to cryoprotect the brains.
I'm not sure if this is in artifact from the perfusions or if something is going wrong during the staining itself. Any help would be appreciative!!
Relevant answer
Answer
Your peroxide, to kill endogenous peroxidase may be degraded. Try new peroxide. It seems to go off suddenly.
  • asked a question related to Mice
Question
6 answers
I had to perform an LC-MS to check the post translaltional modifications of my histone isolated samples from mice brain. Can anyone let me know that how to perform desalting of my sample for LC-MS...????
Relevant answer
Answer
Thank you Mr. Murat Eravci... This will surely help me out for the troubleshoots
  • asked a question related to Mice
Question
2 answers
Hi , I am looking for a full protocol for immunostaining of mouse pancreatic islets after isolation. I put them in RMPI after isolation. How can I prepare them for staining? and can I do costatining with two antibodies?
Relevant answer
Answer
Thanks Salah A.Alshehade
I want to understand do I have to do them in paraffin wax blocks or no? Because they will be suspended in media or washing buffer.
  • asked a question related to Mice
Question
1 answer
In order to study melanoma lung metastasis in aged hosts, we did RO injection of B16F10Luc2 melanoma cells (expressing firefly luciferase) into both young (16 weeks) and old (>2 years) mice. However, we noticed a fair amount of signals were coming from the eye area when doing IVIS on these mice meaning many of the cells injected were trapped in the eye and forming localized tumors instead of metastasizing to the lung. I wonder if this is a normal thing and if there are any ways to prevent this from happening.
Relevant answer
Answer
Retro-orbital inoculation of tumor cells is very likely to give rise to trapping of some of the injected tumor cells in the eyebed and hence tumor formation. It is better to introduce such cells via the tail vein. If a second population of cells needs to be injected i.v. as well (for example primary lymphocytes) these could be injected retro-orbitally (provided this is still allowed under the pertinent legislation). These should be primary cells in rder to avoid the problem raised in the question. It should be mentioned that detection of tumor cells in the lung upon i.v. injection is not a very good model for metastasis, its appearance most likely representing trapping of the tumor cells in the vasculature of the lung. It is a valid model to measure, for example, the potency of anti-tumor immunotherapy approaches.
  • asked a question related to Mice
Question
1 answer
What is the overall protein content in one mouse cardiomyocyte?
Relevant answer
Answer
Question is totally factual .I dont know extract figure
  • asked a question related to Mice
Question
1 answer
I use STZ 50mg/kg/day(ip) for 5 consecutive days to induce diabetes in mice. Solve STZ in 0.05M Citrat buffer pH 4.5. However, some mice died within 5 minutes after STZ injection. Autopsy results in mice revealed ascites. I have no idea why they die and produce lots of ascites. Does STZ cause ascites in mice?
Relevant answer
Answer
Did you ever get an answer to this question?
  • asked a question related to Mice
Question
1 answer
I want to isolate mouse bone marrow neutrophils to study neutrophil extracelluar trap, but the vechicle group always activation.
Relevant answer
Answer
Dear Dr. Chen Shuai
In the below attached paper, the investigators isolated neutrophils from murine bone marrow by negative immunomagnetic isolation using a complex antibody cocktail. Most importantly, cells obtained by this method are non-activated and remain fully functional in vitro.
You should try this antibody cocktail which is able to isolate highly pure mature neutrophils which remain in a resting state during the isolation protocol.
Regards,
Malcolm Nobre
  • asked a question related to Mice
Question
2 answers
We are currently working with MN9D cell line. MN9D cells are mouse midbrain that are Dopaminergic. We do several HPLC analysis on the MN9D cells for over 20 years and have always seen dopa and dopamine peaks. For the past month we have not seen any dopamine peaks in HPLC, but only dopa peaks, even in our control samples. We know it's not a HPLC problem because injected a dopamine standard and it shows nice sharp peak. We have kept all our conditions constant in terms of our cell culture method. Our Passages number are pretty low as well. I am not sure what is going on and why we don't see dopamine. Does anything have suggestions?
Relevant answer
Answer
You can try to:
Check the health and morphology of the cells under a microscope. Look for any signs of contamination, stress, or poor viability that could impact dopamine production.
Test a fresh vial of cells from an early passage to rule out genetic drift causing loss of dopamine phenotype.
Be sure the cells are being properly lysed and that dopamine is not being degraded during processing.
Run a spiked sample with added dopamine standard to rule out an issue with detection.
Check dopamine metabolizing enzymes - are they still expressing? Is dopamine being converted to downstream products before analysis?
Consider analyzing mRNA or protein levels of enzymes involved in dopamine synthesis to see if expression has decreased.
  • asked a question related to Mice
Question
1 answer
Could bis (cyclohexanone) oxaldihydrazone soluted with water to feed mice induce demyelination model?
Relevant answer
Answer
Haohao Chen, anything that causes that much interstitial edema as to rupture the tender connection between oligodendrocytes and myelin sheaths can be expected to cause central nervous tissues to demyelinate.
The longest-known demyelinating agent is mechanical concussion with its shearing effects (Hans Schmaus, Munich, experimental spinal concussion of the late 1890ies; Bunge & Bunge's CSF-barbotage lesions of the early 1960s)
  • asked a question related to Mice
Question
5 answers
Has anyone seen anything like this? The female Ornithodoros turicata engorged on a mouse and this is how I found it after taking off the animal. Normally this doesn't happen and nothing protrudes from the genital opening after a female tick is fed. My guess is this is a pathology of some kind. Perhaps because of the internal pressure generated by the sucking action the vestibular vagina prolapsed/everted somehow... Any ideas?
Relevant answer
Answer
The inbreeding is a rather reasonable explanation.
  • asked a question related to Mice
Question
1 answer
DuoSet ELISA
Relevant answer
Hi, did you check in the datasheet?
  • asked a question related to Mice
Question
4 answers
I have tried lowering the Tm, worked on human DNA but not on mice DNA. Tried optimizing denaturation temperatures too. Any suggestions?
Relevant answer
Answer
Here are a few things you could try:
- Increase the annealing temperature
- Reduce the primer concentration
- Check your primer design for self-binding (there are several online tools for this)
- Consider designing new primers
  • asked a question related to Mice
Question
1 answer
Hello everyone,
I have the following question regarding the number of organoids in culture.
I performed a seeding assay with mouse tumor colorectal organoids. I seeded 2000 cells (dissociated from the organoids) and take pictures after 3 and 5 days. And then count the number of the experimental and control.
I observed a difference but the question is, Why is this possible? If I seed the same amount of cells and from this individual cells the organoids will grow, why the number of formed organoids can be different?
Some cells from a forming organoid scape and grow independently to form another organoid? Or some cells from the 2000 seeded cells do not grow and die?
All your comments are welcome
Thank you in advance.
Relevant answer
Answer
There are a few potential reasons why the number of organoids formed could be different between experimental and control groups, even when starting with the same number of seeded cells:
  • Variable viability of cells - Some seeded cells may die off before forming organoids, reducing the final organoid count. If there are differences in cell viability between experimental and control groups, this could lead to different organoid numbers.
  • Clumping of cells - Seeded single cells may stick together and form clumps, which then grow into a single organoid. More clumping in one group could reduce organoid counts.
  • Fragmentation of organoids - As organoids grow, some may fragment into smaller organoids. More fragmentation in one group could increase organoid counts.
  • Differences in organoid coalescence - Growing organoids may fuse together. Less coalescence in one group could increase organoid counts.
  • Variable organoid growth rates - If organoids grow at different rates between groups, faster growing organoids may appear sooner and be counted, impacting numbers.
  • Seeding technique inconsistencies - Small differences in seeding density or distribution could lead to differences in organoid development.
  • asked a question related to Mice
Question
2 answers
Hi, currently in our lab theres a lot of transgenic mice model generation, wich means a lot of breeding and lot of genotyping. We are using tails, we lyse them ON and run a PCR and a gel. The problem is since we got up to anywhere from 20 to 100 tails a day and they have to be genotyped for up to 6 genes this method is proving to be very time consuming.
Im trying to find a streamlined method that dosent involve so much man hours to complete.
P.S : we just have una qPCR machine but 3 normal thermocyclers dedicated to genotyping.
Relevant answer
Answer
I guess much of the work is in loading all the gels? You could develop qPCR probes for your six genes. Then you could scratch most of the gels, save for the occasional quality control.
  • asked a question related to Mice
Question
2 answers
Looking for a good STING/TMEM173 unconjugated, monoclonal antibody, reactive in mice for western blots, immunoprecipates, and potentially immunofluorescences. Ideally, I'm looking for antibodies for unphosphorylated and phosphorylated forms of STING/TMEM173.
Relevant answer
Answer
Russell Linscott that's what the conclusion I came to as well. I did find one through cell signaling that I plan to try on a western blot.
  • asked a question related to Mice
Question
1 answer
Any recommendation for TXNIP western blot? Adult mouse cortex samples
Relevant answer
Answer
Rabbit mAbs AEBA-20, RB30652 and 8A11 are supposed to react with mouse TXNIP in WB. They are available from BosterBio and antibodies-online, and no doubt others as well. These suppliers also have pAbs directed at mouse TXNIP.
  • asked a question related to Mice
Question
2 answers
I am planning to induce status epilepticus with a subconvulsive dose of pilocarpine. I have experience with the pilocarpine model but try to find out a subconvulsive dose.
Relevant answer
Answer
Thank you Espinosa
  • asked a question related to Mice
Question
3 answers
I am wondering to block the synthesis or at least suppress cholesterol in a mice model and I was wondering how to do it and which are the best options to avoid using the knock out mice.
Relevant answer
Statins or do your own siRNA against the mRNA of HMG CoA reductase.
  • asked a question related to Mice
Question
2 answers
What would be the impact if I removed the teratoma and kept the mice alive?
Relevant answer
Answer
We did that once, to test if the teratoma were malignant. It turns out, the mouse is easily cured by cutting out a large subcutaneous ESC teratoma and lived happily ever after.
  • asked a question related to Mice
Question
2 answers
I am running mouse amyloid beta 42 ELISA using the kit from Invitrogen. According the manufacturers guideline, the samples should be diluted so that the concentration of guanidine in final solution is <0.1M. Of note, the homogenization buffer is 5M Guanidine/50mM Tris. Even after diluting the sample to final guanidine concentration of 0.08M, I am seeing suppression of the standard curve. Has any one experienced this before? Thanks!
Relevant answer
Answer
Saif Wahid Thank you very much for your valuable suggestions! I do have some follow up question of your suggestions
Suggestions 1 and 2.. They kit does not come with a homogenization buffer, the used have to prepare the buffer. Did you mean to say homogenize with less concentrated guanidine buffer instead of the suggested 5M concentration? Because after homogenization, samples were diluted to final concentration of 0.08M guanidine in sample
As for suggestion 3, I ran another trial with BSA in the dilution buffer however with no success. I will try another run with BSA in the homogenization buffer. What concentration of BSA should I use? If you could suggest, that would be big help! Thanks!
  • asked a question related to Mice
Question
3 answers
My research aims to produce a novel mouse model for T2DM and I have two dosage techniques to administer STZ in C57BL/6 mice: single high dose (SHD) and multiple low dose (MLD). Within these groups, in my study design I have divided my animals into three subgroups:
- SHD: 75 mg/kg, 100 mg/kg, and 150 mg/kg
- MLD: 40 mg/kg, 50 mg/kg, and 60 mg/kg, each for 5 days.
When it came to the MLD groups, I basically sandwiched the standardised protocol provided by DiaComp of 50 mg/kg dose of STZ with a dose 10 mg/kg higher and lower. However, the ethics committee is requesting a substantiation for this and thus I would like to know if what I did is correct, and if there's literature to back this up, or if I should change my MLD dosage groups altogether. Please assist. Bear in mind, the model aims to assess the major microvascular complications, and thus the diabetic condition should mimic the later stages of the disease.
Thank you.
Relevant answer
Hi Khan,
I'm sharing a paper with you that discusses what you need and points out that there are different variations in the induction of experimental diabetes in animal models between laboratories. My recommendation is that you conduct assays with at least three doses, for example, 50, 75, 100 mg/kg of STZ, and evaluate the glucose levels in your mices. This will allow you to observe the behavior and dynamics, and then determine which model best suits your needs. Also, please consider whether you want to induce type 1 or type 2 diabetes. Just administering STZ will resemble type 1, but if you add diet or nicotinamide, it will resemble type 2 diabetes.
Best regards, Jorge Armando
  • asked a question related to Mice
Question
2 answers
I am working on simple Y maze these days. I observed that most of my disease mice didn't show any spontaneous alteration in the experiment? However, some of the mice show some alteration. Could anyone suggest how to represent these data. because when I combined them together data has high SD.
Relevant answer
Answer
Thank you Wanjing Lai. I think the number of arm entry is also low.
  • asked a question related to Mice
Question
1 answer
I am trying to mesuare intracellular ROS with DCF dye in isolated lung cells from mice that have been treated with LPS for three days. The problem is that I have lower ROS production in LPS-treated mice than in naive mice, when it should be higher. We incubate the cells with 10 uM DHCF for 30 min at 37 degrees, then we wash the cells and mesuare the fluorescence by flow cytometry. Maybe there is another way to do it or there is something happening with the mitochondria? Maybe LPS induce mitochondria extrusion from the cell and we can not detect fluorescence?
Relevant answer
Answer
Depends on the concentrations you are using. Low exposure levels could be stimulating the ROS scavenging pathways while the low dose is not generating as much ROS causing lower total ROS. I would suggest transfecting with roGFP reporter plasmids and seeing if you get the same result.
  • asked a question related to Mice
Question
1 answer
I have an idea on how to dissect motor cortex from mouse and I'd like to find an article or a book, does anyone have some piece of information?
Relevant answer
Answer
Hi Joana,
You may find this 3D viewer tool from Allen Institute useful:
Hope this helps!
  • asked a question related to Mice
Question
2 answers
Hi everyone,
I would like your opinion on using the complete() function of the mice package on R.
Theoretically, after multiple imputations, analyses should be performed on each imputed dataset, and then the results of the analyses should be pooled (see attached diagram).
However, I consider the complete() function. In summary, it permits generating a unique final dataset using the results of multiple imputations previously performed with the mice() function. This strategy is easy, "inexpensive," and allows us to manipulate only one dataset.
This is a concrete example of the usefulness of this strategy. I am conducting mixed-methods research in which I want to interview some participants after analyzing their responses to my survey. If my respondent John Doe did not answer to an item of a scale, I would risk having 5 plausible answers from John Doe after multiple imputations (if m=5, or 20 plausible responses if m=20, etc.). However, the complete() function will summarize the different estimates into one dataset (instead of 5, or 20, etc.). Basically, during an interview, I will be able to question John Doe based on his scale score computed with NA replacement. So I lose precision, but gain in ability to exploit the answers.
However, this approach seems problematic, as the literature does not support it well. In fact, except for this paper by van Buuren et al. (2011, cf. section 5.2), I cannot find any source that supports this approach:
van Buuren, S., & Groothuis-Oudshoorn, K. (2011). mice: Multivariate Imputation by Chained Equations in R. Journal of Statistical Software, 45(3), 1-67. https://doi.org/10.18637/jss.v045.i03
Well, I'm stuck between a rock (a more rigorous approach, i.e. the pooling) and a hard place (a more practical approach, i.e. the complete() function). What do you think?
Hope to read you (and my apologies for my broken English)
FM
Relevant answer
Answer
I believe that "complete" just extracts the imputed data sets, and if you don't specify further, it will give you the first imputed set.
So it seems obvious that you shouldn't use this function and perform analysis or present descriptive statistics just based on this one data set, as you will drastically (depending on the amount of uncertainty in the imputations) underestimate standard errors and with that confidence intervals and p-values. Basically then you would be doing a weird kind of single imputation instead of multiple imputation.
So: Don't.
  • asked a question related to Mice
Question
2 answers
I performed a western blot using different tissues from the mouse(brain,lung,liver,spleen,small intestine, colon, kidney, testis). However, I observed a significant amount of background on the membrane. Why is there more background in the tissues during the western blot, but none in the cell line? What are the differences between them, and how can I reduce the background in tissue samples in the western blot?
For protein isolation, I used RIPA buffer containing a 1X protease inhibitor. I homogenized the sample using a rotor-stator homogenizer and then centrifuged it at maximum speed at 4°C for 30 minutes.
For western blot sample preperation, I diluted samples 50 ug in 16 ul RIPA buffer containing 1X protease inhibitor. I added loading dye with 0.2M DTT then I boiled it at 85 °C for 5 min.
I performed 2 hours blocking step and then incubated overnight with the primary antibody ( I prepared with blocking buffer)
I used primary ab 1:1000 for anti-A protein(from rabbit) and 1:6000 for anti-actin(from mouse) For secondary ab, I used 1:15000 anti-rabbit and 1:15000 anti mouse.
To reduce the background, I checked the antibodies by performing three separate western blots. In the first western blot, I omitted the primary antibody to test the specificity of the secondary antibody. In the second western blot, I used a lower concentration of the primary antibody: 1:2000 for anti-A protein (from rabbit) and 1:6000 for anti-actin (from mouse).In the third experiment, I used tubulin, but I didn't observe any difference.
Relevant answer
Answer
When you perform Western Blot detection for tissue lysates, there are signals from endogenous IgGs and nonspecific secondary antibody binding may obscure detection of proteins especially if you are detecting low abundant proteins or proteins of low molecular weight, which may be masked by IgG heavy and light chains generated during the denaturing and reducing steps of tissue sample preparation.
These IgG chains are detected by conventional secondary antibodies that bind to both IgG heavy and light chains. This problem is common while using tissue samples, but it is more pronounced in tissue samples such as thymus or thyroid that are part of the immune system and therefore contain a larger amount of endogenous immunoglobulins.
The solution to this problem is to choose a labeled secondary antibody cross-adsorbed against the species of the experimental tissue, if it is possible. For example, if the tissue you are using is human and the primary antibody is made in mouse, use a labeled anti-mouse IgG that has been adsorbed against human.
In another case, if you are using mouse tissue and this tissue containing immunoglobulins is probed with a primary antibody made in mouse, then the endogenous immunoglobulins should first be blocked with a monovalent Fab fragment of anti-mouse IgG.
Further, there are certain steps you need to follow which are given below.
1) High concentration of antibody causes high background. By diluting the antibody, only higher affinity interactions are sustained. The lower affinity interactions (to remotely similar epitopes) will not last at lower antibody concentrations. So, you reduce the concentration of your primary antibody still further. You may go up to 1:5000 dilution for the primary and for the secondary antibody you may use 1:20,000 dilution. Dilute the secondary antibody in wash buffer only, for example TBST, because diluting the antibody in buffer containing BSA or milk, due to contamination of bovine IgG, sticky immune complexes may form due to cross-reaction.
2) Never block with BSA or BSA-containing solutions because BSA is generally a weak blocker which may result in more non-specific antibody binding. Use non-fat dry milk instead for blocking. Proper blocking conditions may also help to prevent low affinity interactions.
3) You will generally get a higher background if you are using PVDF membrane. Therefore, washing carefully is very important. Wash the membrane 4 times for 5 minutes in TBST with gentle shaking, using a generous amount of buffer.
4) Are you using fresh buffers? If the buffers are too old, you may face such a problem.
5) Another point to note is that too high of an exposure may also lead to this problem. Therefore, it is advisable to check different exposure times to achieve an optimum time.
6) Finally, as mentioned by Denis Komarov use less amount of lysate (10-20ug) to be loaded on the gel unless you are detecting low abundant protein.
Best.
  • asked a question related to Mice
Question
2 answers
Can anyone share tissue processing protocol for mice brain ?
Relevant answer
Answer
Thank you for the response. I am looking for a protocol for tissue processing, starting from transcardial perfusion to parrafin embedding of the tissues.
  • asked a question related to Mice
Question
1 answer
I am working to develop a Mac Elisa protocol that is able to capture the level of Immunoglobulin M (IgM) in mice infected with fungus T. marneffei. I've been mainly running into trouble with false positives from unspecific binding, but I've also had the opposite problem where I got a negative signal from a known positive control. As such, I've been tinkering with the concentration and incubation time of the reagents, including running a couple of concentration grids, but haven't found much success. I am wondering if anyone on here has much experience running or troubleshooting Mac Elisas, and has anything to suggest trying out! Thanks!
Current protocol:
Step 1 (Coating): Anti-mouse IgM polyclonal antibody (5ug/ml), 100ul overnight @ 4 C
Step 2 (Blocking): Blocking buffer, 200ul for 2 hours at room temperature
Step 3 (Sample incubation): Mouse plasma (diluted 1:20), 100ul for 1 hour at 37 C
Step 4 (Antigen): Detect anti-MP1P mouse-IgM with Recombinant MP1P (0.1 ug/ml), 100ul for 1 hour at 37 C
Step 5: Detect immune-complex with Biotinylated anti-MP1P mouse monoclonal antibody (MAb) (1:1000), 100 ul for 1 hour at 37 C
Step 6: Detect biotinylated anti-Mp1p mouse MAb with Stretavidin-HRP (1:2000), 100ul for 30 min at room temperature in the dark
Step 7: Detect HRP with TMB, 10 min at room temperature in the dark
Step 8: Stop activity of TMB with HCL 0.3M
Relevant answer
Answer
Here are some suggestions based on my experience with ELISAs:
1. Check the specificity of your reagents: Make sure that all of your reagents, especially the primary and secondary antibodies, are specifically reacting with the intended target (i.e., IgM) and not cross-reacting with other proteins in the sample. Cross-reactivity can cause false positives or negatives.
2. Optimize the concentration and incubation time of reagents: As you've already tried, optimizing the concentration and incubation time of reagents can help improve the assay's sensitivity and specificity. You might want to try different concentrations of the reagents and compare their performance. Also, consider using appropriate controls (e.g., negative controls, positive controls) to monitor the assay's performance.
3. Use appropriate blocking agents: Non-specific binding can be a common issue in ELISAs. In addition to blocking buffers, you can try adding milk or bovine serum albumin (BSA) to the blocking solution to reduce non-specific binding.
4. Consider using a different detection method: Instead of using streptavidin-HRP, which can sometimes give rise to non-specific signals, you could switch to a different detection method like alkaline phosphatase (ALP) or horseradish peroxidase (HRP)-conjugated secondary antibodies. ALP tends to produce less background than HRP and can be a good alternative.
5. Ensure proper washing steps: Washing steps are crucial in removing unbound material and reducing non-specific signals. Be sure to perform thorough washes after each step, and use appropriate wash buffers (e.g., PBS-Tween).
6. Validate your protocol with known samples: Test your optimized protocol with a set of known samples (both positive and negative controls) to ensure it's performing correctly. This will help you identify any issues before proceeding with unknown samples.
7. Consider consulting experts or literature: If you continue to encounter problems, reach out to experts in the field or consult relevant literature to gain insights into successful Mac ELISA protocols for detecting IgM in mice infected with T. marneffei.
8. Evaluate the possibility of sample contamination: Sample contamination can introduce false positives or negatives into your results. Make sure to handle samples properly, and consider testing your samples for potential contaminants.
9. Assess the impact of dilution factors: Diluting samples can affect the accuracy of the assay. Try comparing the results of undiluted and diluted samples to determine whether dilution is causing issues.
10. Monitor assay performance over time: ELISA performance can degrade over time due to reagent degradation or changes in experimental conditions. Regularly assess the assay's performance and make adjustments as needed.
By addressing these points, you may be able to improve the reliability and accuracy of your Mac ELISA protocol for detecting IgM in mice infected with T. marneffei. Good luck with your research!
  • asked a question related to Mice
Question
4 answers
Hello! I am planning to perform the Object Location Memory Test for mice. I have done the Novel Object Recognition Test before with a protocol my former lab used (four days in total: 1 day of habituation, 2 days of training (same objects) and last day of test (switching one object for a new one).
Which protocol would you recommend for the OLMT? I have seen different ones but I wonder if there is a main one people usually follow.
THank you!
Relevant answer
Answer
Hi Ícaro,
Thank you so much for your feedback and for sharing your protocol.
Indeed I do agree with you and think the best would be to use the protocol of the NORT I was using and just change location instead of object.
Thanks a lot again!
Regards,
Blanca
  • asked a question related to Mice
Question
2 answers
Can anyone share the tissue processing protocol for SEM/TEM of tissue slides of mice?
Relevant answer
Answer
Thankyou so much
  • asked a question related to Mice
Question
2 answers
Hello -- does any one have any recommendations for medication delivery vehicles (food items) that have worked well for C57BL6/J mice. The drugs we plan to use are somewhat bitter. Our study also needs to avoid foods with fat so we cannot use nut butters, chocolate, or dairy products.
Thanks in advance.
Relevant answer
Answer
Hi!
I have done it in mice chow (AIN93M diet).
In this paper we discuss drug route, jelly is a interisting option but I have never tried:
Good luck!
  • asked a question related to Mice
Question
1 answer
Do I understand correctly that heterozygous Pmel mice have twice as less cells that carry anti-gp100 TCR? This should be right because of the allelic exclusion. If so, can one combine both homo and hetero mice in one experiment (if doesn't have enough homo) just by doubling the number of transferred hetero cells?
Relevant answer
Answer
It is not necessarily the case that heterozygotes produce half as much of the mutated protein. Other factors will also influence production such as environment and other protective or deletarious background factors
  • asked a question related to Mice
Question
2 answers
AS the cd4+ T cells of OT-II mice are specific for chicken ovalbumin 323-339 peptide,OVA protein plus Aluminum hydroxide adjuvant can lead to the specific proliferation of Th cells,why some articles also plus LPS to induce immune? Does LPS induce the non-specific proliferation of Th cells?
Relevant answer
Answer
Hello Rui Zhao
LPS induces the activation of dendritic cells throughout the engagement of toll-like receptor 4 (TLR4). LPS-activated dendritic cells show increased capacity to process and present pathogen-derived antigens to activate naïve T cells. The dendritic cells which are antigen-presenting cells communicate with T cells both directly and indirectly. These dendritic cells require OVA+LPS in vivo to activate naive OT-II T cells ex vivo. Therefore, you will come across in some studies that LPS is used as an adjuvant when immunizing OT-II mice with OVA.
Best.