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I'm a graduate student in paleoclimatology, but I only have a foundation in marine science. What textbooks should I read to gain a systematic knowledge of paleoclimatology?
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Holocene climate change, by Shaowu Wang. Lake sedimentation and environmental evolution, by Ji Shen. Earth System and Evolution, by Pinxian Wang. These are Chinese books. Sedimentology and Stratigraphy, by Nichols Gary. Both Chinese and English are available.
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Dear all,
I am doing this marine magnetic survey at a jetty/ barge, where the seabed is scattered with various dumped materials (proven from side scan sonar mosaic). After producing the QAS grid, I found the anomaly patches show a "survey line-following" trend, which means you could easily tell the survey line orientation etc by only looking at the QAS result. The result is so unreal and I couldn't figure out the main reason causing it. I have made a small assumption to trying to explain it (see picture 7 attached), and tried larger iteration number when producing residual grid.
I have attached the detail processing steps, together with illustrations to make this thing easy and clear for your understanding. If you need more information, please leave your comment and I will update you very soon. I would really appreciate if you could help me to understand this. Thank you in advance.
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Try to represent your data with a contouring software like "surfer" (by goldensoftware)
Good luck
Rainer
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This discussion is to record the maintenance, development, and update of the MATLAB module to detect and analyse marine heatwaves - m_mhw.
If you have any suggestions, requests, or questions regarding this toolbox, please feel free to comment or email me
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Great!
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CallforPapers
Attention, Please!
The journal, RIG (Revue Internationale de Géomatique, the International Journal of Geomatics), is pleased to invite original paper submissions on theories, methods, developments, and applications related to #geographic information, such as #GIS (Geographic Information System), #RS (Remote Sensing), and more. Papers can encompass theoretical or methodological studies of geographic information, as well as interdisciplinary applications in fields like agronomy, ecology, urban management, forestry, disaster science, geomorphology, marine science, meteorology, and others.
We would like to emphasize that RIG is now an open access journal published in English, and currently, there are no Article Processing Charges (APC) required.
For more information, please visit our official website: https://www.techscience.com/journal/RIG
For submissions or any further questions, please contact us via email at rig@techscience.com or dahlia.lai@techscience.com.
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Thanks for sharing. Possible to share the publishing house in my inbox? I could send my MSc article.
Regards
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My research topic entitled ”Biodegradation of Emerging Marine Contaminants” @FrontMarineSci will be closed soon. Please submit your articles before the end of June to the following link: https://www.frontiersin.org/research-topics/40915/biodegradation-of-emerging-marine-contaminants#articles
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Thank you so much, Please feel free to distribute the announcement in your department.
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I think it's an interesting question: both physical ocean and marine biogeochemistry are involved, and perhaps enlightening for marine ecosystems.
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@Fanyi Meng The book 'The Extreme Life of the Sea' by Anthony R. Palumbi and Stephen Palumbi might help you.
This article might also be helpful
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In general, there are several automated eddy detection algorithms. However, each identification method poses a multinuclear eddy identification problem, e.g., multiple SLA extremes. This problem can occur when multiple eddies are physically close together. We tried to solve this problem with the following paper "A new mononuclear eddy identification method with simple splitting strategies" and the paper "Technical Note: Watershed strategy for oceanic mesoscale eddy splitting" in Ocean Science, which can be downloaded from http://www.ocean-sci-discuss.net/11/1719/2014/osd-11-1719-2014.html. We hope these strategies be helpful for the investigations in ocean dynamics.
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Dear Everyone,
Could you please suggest me any Organisation/ company/ government that have fund/research grant for international research in aquaculture/ marine biology or related fields? (I can use the fund to do research in any lab/any country).
Thank your so much for your time. I really appreciate you time and answer.
Thao
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WWF
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I have a time series of monthly chlorophyll-a observations that spans from 1997 to present day. I have computed the p-value of the time series without removing the seasonality, and it doesn't quite show much of a trend. So, my question is, is the seasonality of the data affecting my computation, and if so, should I remove it? And, any recommendation on which methods that I should use to deseasonalise the time series.
I apologise if my question makes no sense. Thank you in advance.
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Well time series include serial correlations, trend & seasonality features. So any prediction or results are conditional on data treatment and/or model. you will need to qualify your conclusions by "de-trended series shows..." or "seasonally adjusted series shows..." or "De-trended and seasonally adjusted series shows...".
***in your question you rightly tell that you fitted linear model and the size of p-value...try models like Fourier curve (single or double)...good luck
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Dear everyone who might be able to help:
Hello!
I'm currently a student in marine science and I am writing my master thesis about Elasmobranchs and the big numbers that are being caught by small-scale fisheries in Brazil (Rio de Janeiro state, six sample sites, or better: landing sites).
My aim was, to get an idea of the species diversity/composition of the different sample sites, looking at sharks and rays that have been landed by fishers.
Because of unforeseeable events, the amounts of individuals sampled by me is pretty low, samples for each of the sites range from 1-20 individuals, in total I sampled 43 individuals from 14 species. My question is now: Does anyone have any suggestions what statistical analysis I can do with such a small sample size, that yields some interpretable and relevant results? I am open for anything that might contribute positively to the value of my thesis, in all directions. So far, I have been suggested to use EcoSimR for a co-occurrence null model, because it only utilises presence/absence data.
If there is some descriptive information for my problem missing, please let me know.
In any case, I'm grateful for all advice.
Kind regards,
Benoit Moreaux
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Dear Benoit,
If you are comparing your sampling sites, I would suggest using Dunn's tests. Dunn's tests work very much in the same way as a Kruskal-Wallis test (a non-parametric equivalent of the ANOVA test that does not assume normal distribution or equal variances) and is great for small sample sizes. However, unlike Kruskal-Wallis tests the Dunn's tests allow for post-hoc pairwise comparisons. There is an R package that allows you to perform Dunn's tests very easily:
Hope this helps!
Best wishes,
Dan
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I am currently conducting a coral conservation project where we 1) rescue corals (loose and broken fragments/branches) 2) transplant on cement+glass plates in nursery site 3) send them back to natural site to recover damaged/patchy reefs.
My question is, are there any specific distances when placing corals from each other?
The 2 pictures below are some of the corals that we placed at the damaged and patchy reef site.
I would normally refer to reference sites to estimate suitable density of transplant and the distance from each other. But i'm not sure if it can be applicable at restoration sites to reduce competition/stresses among growing corals.
Appreciate the recommendations and comments
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Hi, To a large degree the distance between the coral transplants will depend on the life history strategies of the species you select for your conservation project. The following paper should give you some ideas how to proceed:
Here is another paper that recommends that distance between coral transplants of branching species should be greater than 0.5 m, and greater than 0.2 m for massive species.
There are many manuals out there on coral transplant techniques, but the following one from Seychelles is one of the best. See page 44 for recommended densities of coral transplants.
file:///C:/Literature/Coral%20Reefs/Recovery/2018-Toolkit-CoralReefRestoration.pdf
I hope this helps a bit.
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Hi Everyone,
Does anyone have experience in working with haemocytes of P. vannamei or P. monodon? Could you please suggest me any effective method to prevent cell clumping when taking haemolymph out from shrimp?
Thank you so much.
Thao
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This is not for your species, but should help. Addition of some EDTA calcium/magnesium chelator, adjusted to neutral (pH7) or haemolyph pH should work. Add 1-2 drops of a 2% solution per ml. If the clumping occurs as you harvest the haemolymph, try starting with a small amount of 0.5% EDTA or EGTA in saline in the syringe or pipette You use to collect your sample.
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Dear All,
Can you help me in disseminating this EU Fisheries and Aquacolture Products Database?
The European Union (EU) Fisheries and Aquaculture Products Database of the EU database on fishery and aquaculture products, is NOW ONLINE! It is an information system on the commercial names of fishery and aquaculture products marketed in the EU. The database is the result of a pilot project that involves several partners, including the National Research Council - Institute of Marine Sciences (CNR-ISMAR) of Ancona (Italy), funded by the European Union and co-ordinated by the Directorate-General for Maritime Affairs and Fisheries (DGMARE). The project aims to provide a complete information system, available in all official EU languages. The purpose of this information system is to provide consumers and all stakeholders with information on fishery and aquaculture products through a centralized multilingual system. The information system focuses primarily on trade names. It also includes species names, FAO codes, marketing standards, catch zones and fishing gear. The system is a reference point for all users in the EU, whether they are consumers, traders, or control authorities.
You can easely find the database site by copy and paste the following link:
Your suggestions, your directions, and more generally all your observations are very important. To help you with this task, we've created an online questionnaire that will take you a few minutes of compilation but will provide us with important information to improve and modify the web portal more effectively. The questionnaire can be reached at the following link (both in Italian and English):
Hopefully you will find the service offered by this useful portal, thank you for your cooperation.
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I will try of my best to disseminate its to the people related to my field of aquaculture and fisheries
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Do you know of any research on the impacts of structural changes of shallow nearshore areas to fish juveniles in temporal zones? By structural changes we mean small- and large-scale habitat changes caused by constructions such as ports, jetties, canals, nearshore wind farms, tidal energy facilities; (2) coastal protection structures, beach nourishment or any other shoreline modi cations; (3) underwater structures such as artificial reefs, cables and pipelines; (4) habitat changes caused by extraction, land reclamation, or habitat enhancement and restoration.
We are conducting systematic review on this topic and would appreciate help in getting grey literature. We are particularly interested in literature that is unpublished or not catalogued in the main academic databases - in English, Dutch, Danish, Finnish, German, Swedish or Spanish.
More info about the review here: http://www.eviem.se/en/projects/Fish-recruitment/. Thank you!
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Recreational and scientific scuba diving are for me insatiable passions. However, it came to my mind that we are currently experiencing a shift in underwater data acquisition thanks to the development of AUV, ROV, surface drones and acoustic methods. This interest is also linked with a shift in my career going from extensive underwater sampling by scuba diving to remote sensing by acoustic methods and the awareness that came with it. So my (heartbreaking) opened question foreseeing the end of the scuba diving era within few decades.
What is your feeling about this?
Which fields see the fastest changes?
Which remote or automated techniques already exist or will emerge?
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Hi Arnaud,
It depends on your research question. You apply what is most applicable, SCUBA for shallow water and remote and manned subs for deep. I would do both. If your career requires you to go deeper, then you need to find another way to continue working in shallow water. Best wishes, Bert
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Dear all;
I want to calculate the weight of anchor for a fish cage in the sea. This fish cage has a circle shape and is built by buoyant structures for floating on water surface, net is connected to this structure and an anchor to sustain the cage in the sea.
Would you please introduce some references for calculating the weight of proper anchor for this structure?
The schematic figure of this cage is attached with this question.
Best Regards,
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As indicater by George de Neef, there is no simple answer, as a proper design depends on a number of aspects:soil properties, cage characteristics and environmental conditions and economic design life of the cage and the risk percent to encounter higher loadings. I put below a list of relevant publications, I used in a recent advisory study. Happy industrious learning.
References:
Ágústsson G., 2004. Design considerations and loads on open ocean fish cages south of Iceland, M.Sc. thesis, University of Iceland, June 2004
Aarsnes J. V., H. Rudi and G. LoLand, 1990. Current forces on cage, net deflection, Engineering for offshore fish farming. Thomas Telford, London, 1990
Berstad, A.J.and Heimstad, L.F.(2015), “Numerical Formulation of Sea Loads to Impermeable Nets”, VI International Conference on Computational Methods in Marine Engineering MARINE 2015, Rome Italy
Berstad, A.J., Heimstad, L.F. and Walaunet, J.(2014) “Model Testing of Fish Farms for Validation of Analysis Programs.” Proceedings of the ASME 2014 33rd International Conference on Ocean, Offshore and Artic Engineering OMAE2014, (June 8-13 2014), San Francisco, California. OMAE2014-2464
Berstad, A.J., Walaunet, J. and Heimstad, L.F (2012), “Loads from Currents and Waves on Net Structures.”Proceedings of the ASME 2012 31st International Conference on Ocean, Offshore and Artic Engineering OMAE2012, (July 1-6, 2012), Rio de Janeiro, Brazil. OMAE2012-83757.
Berstad, A. J., Tronstad, H., Ytterland, A. (2004), “Design Rules for Marine Fish Farms in Norway.
Calculation of the Structural Response of such Flexible Structures to Verify Structural Integrity.” Proceedings of OMAE2004 23rd International Conference on Offshore Mechanics and Arctic Engineering June 2004, Vancouver, Canada. OMAE2004-51577
Berstad, A. J. and H. Tronstad (2005a), “Response from current and regular/irregular waves on a typical polyethylene fish farm” , Maritime Transportation and Exploitation of Ocean and Coastal Resources. Eds. C. Guedes Soares, Y. Garbatov, N. Fonseca. 2005 Taylor & Francis Group London. ISBN #: 0 415 39036 2.
Bessonneau J.S., Marichal D. 1998. Study of the dynamics of submerged supple nets (application to trawls), Ocean Engineering, 25(1), pp 563-583
Beveridge M. C. M., 2004. Cage Aquaculture, 3rd Ed., 2004 by Blackwell Publishing Ltd
Beveridge, M.C.M.B. 1996. Cage aquaculture, 2nd Edn. Fishing News Books, Oxford, p. 346.
Blendermann W., 1987 .An analysis of the hydrodynamic forces on cables and nets, Applied Ocean Research, 1987, Vol. 9, No. 4
Bratteland E., ed., 1988. Advances in Berthing and Mooring of Ships and Offshore Structures, Kluwer Academic Publishers.
Burrows R., R.G. Tickell, D. Hames & G. Najafian, 1997. Morison wave force coefficients for application to random seas, Applied Ocean Research, 19 (1997) 183-199, Elsevier Science.
Cairns, J. and Linfoot, B.T. 1990. Some considerations in the structural engineering of sea cages for offshore fish farming. In: - Acquaculture Engineering, Technologies for the future, Thomas Telford, London, pp. 63-77.
Carson, R.M. 1988. Engineering analysis and design of cage systems for exposed locations, in: Aquaculture Engineering:Technologies for the Future. Ing. Chem. Eng. Symposium series No. 111, pp. 77-96, EFCE Publication Series No. 66, Institution of Chemical Engineers, Rugby, UK.
Chalia s., 2014. A Numerical Simulation of Full 3D Model of Net-Cage Structure - Mooring Line Tension, International Journal of Current Engineering and Technology, Vol. 4, No. 4 (Aug 2014), http://inpressco.com/category/ijcet
Chen H., and Christensen E.D., 2015. Methods for current and wave interaction with fish cages: A
review. In Christensen, E. D., Sumer, B. M., Schouten, J-J., Kirca, Ö., Petersen, O., Jensen, B., ...
Burchard, H. (2015). D5.3 Interaction between currents, wave, structure and subsoil., MERMAID mermaidproject.eu, FP7 Theme [OCEAN.2011-1] “Innovative Multi-purpose off-shore platforms: planning, design and operation”
Cheslav B., B. Colbourne, N. Bose, W. Raman, 2009. Aquaculture Net Drag Force and Added Mass, Aquacultural Engineering 41, pp. 14–21.
Cifuentes C. and M. H. Kim, 2014. Dynamic Analysis for the Global Performance of An SPMFeeder-Cage System Under Waves and Currents, China Ocean Eng., Vol. 29, No. 3, pp. 415 – 430
Cremer M. C., H. P. Lan, and J. Chappell, 2008. Engineering Manual: U.S. Soybean Industry OCAT Offshore Ocean Fish Culture Cage, U.S. Soybean Export Council
Dept. of Agriculture, Food and the Marine, 2016. Protocol for Structural Design of Marine Finfish Farms, April 2016, Ireland
Gansel L. C., D. R. Plew, P. C. Endresen, A. I. Olsen, E. Misimi, J. Guenther, Ø. Jensen, 2015.
Drag of Clean and Fouled Net Panels – Measurements and Parameterization of Fouling, PLOS ONE
10(7):e0131051. doi:10.1371/journal.pone.0131051
Huguenin J. E., 1997. The design, operations and economics of cage culture systems, Aquacultural Engineering I6 (1997) 167-203
ISO 16488:2015, 2015. Marine finfish farms - Open net cage - Design and operation, International Standards Organization, 15 July 2015.
Kumar V., and Karnatak G., 2014. Engineering consideration for cage aquaculture, IOSR Journal of Engineering, Vol. 04, Issue 06 (June. 2014), V6 pp. 11-18.
Marine Scotland, 2015. A Technical Standard for Scottish Finfish Aquaculture, The Scottish Government, June 2015, Edinburgh
Mochet C., F. Paquereau, N. Decultot, 2014. Mooring Integrity: Forensics Programs on Used Mooring Connectors Lessons Learned, Present Practices & Future Developments, Deep Offshore Technology International Conference, Aberdeen, Scotland, October 2014., Paper DOT-2014-79
Norwegian Standard NS 9415.E:2009, 2009. Marine fish farms - Requirements for site survey, risk analyses, design, dimensioning, production, installation and operation, Norwegian Ministry of Fisheries
and Coastal Affairs, 10 Nov. 2009, published April 2010, Standards Norway
Rudi H., J.V. Aarsnes, and L.A. Dahle, 1988. Environmental forces on a floating cage system, mooring considerations. In: Aquaculture Engineering: Technologies for the Future. Ing. Chem. Eng. Symposium series No. 111, pp. 97-122, EFCE, Publication Series No. 66, Institution of Chemical
Engineers, Rugby, UK.
Sarpkaya T., and Isaacson M., 1980, Mechanics of wave forces on offshore structures, Van Nostrand Reinhold Co., N.Y., USA.
Siddiqui M. A., V. Nagarajan, 2016. Dynamics of a Single Point Mooring Marine Aquaculture Cage as a Simple Vibrating System, Intl. Journal of Maritime Technology,Vol.5, Winter 2016 (13-25)
Turner R., 2000. Offshore mariculture: Mooring system design, in: Muir J., Basurco B.,- Eds., Mediterranean offshore mariculture. Zaragoza: CIHEAM, 2000. p. 159-172 (Options Méditerranéennes: Série B. Etudes et Recherches; n.30
Zhao Y., T. Xu, C. Bi, G. Dong and S. Liu., 2012. The Numerical Simulation of Hydrodynamics of Fishing Net Cage, in: Zheng Jinhai, ed., Hydrodynamics - Theory and Model, Chapter 12, InTech, March 2012, http://www.intechopen.com/books/hydrodynamics-theory-and-model
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Or at least use the sentence waves above waves. If you can provide the source that would be great.
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1) Not exactly an internal wave, but the two-directional current system in the Bosphorus has been known for centuries.  Surface waters flow from the Black Sea to the Sea of Marmara, and bottom (much more saline) waters flow from the Marmara to the Black Sea at the same time.  Fishermen wanting a "free ride" to the Black Sea against the surface current would lower their nets to catch the lower flow.
2)  Fridjtof Nansen had a research ship named the "Fram", which may be the one that Dennis Mazur is referring to above.
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Good day! I would like to ask if what would be the suitable natural food for eyebrow gobies that would be very convenient for a short-term experiment. Your answers will be a great help for my undergraduate thesis. I am looking for a natural food that is very accessible, affordable and is easy to grow. I am having an experiment on the behavior of a goby towards food. I have three treatments, artificial, natural and the combination of both. I am still looking for the best natural food that I could use for this experiment. Thank you!
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I would suggest to feed them brine shrimp. It is easy to purchas brine shrimp cysts and let it hatch then use it in feeding.
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Hello everyone, 
with my immense pleasure, the college where I teach asked me to deliver a course of statistics for animal science/marine science/bioscience students (2nd and 3rd year of Bachelor's degree).
Can you suggest a good book I can use for the course, ideally tailored for animal/biological sciences?
Many thanks,
Andrea
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Hi Andrea,
you can find books of statistical methods by N G Das 
Regards
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I m wandering if the attenuation of visible light in lakes could be used as an indicator for the predation risk for zooplankton, while they do the diet vertical migration. 
I have searched on google scholar, not found any information on this subject, however, most articles have the basic data of fish biomass and light attenuation coefficient (Kd). 
I suppose if there is no direct link between those 2 factors of DVM. It might be good to do an meta-analysis for this kind of study. 
I just want to know is anyone have maybe study on the same topic? 
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Hi Anton, thanks so much for references, I will look into those papers
Just few drop of look, I see something very interesting in those articles. 
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I want to do a new research by using remote sensing and GIS with oil (identifying, detecting, or any other application?
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oysters, biofouling, air exposure
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Maria:
You may find this link useful:
Best
Syed
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One of the most famous lakes in indonesia, Lake toba got contaminated due to fishing nets. you can check the general situation through following link : https://www.pressreader.com/indonesia/the-jakarta-post/20170114/281681139571068
I have been looking for how to restore this kind of contaminated lake but I couldn't find any other case with the similar problem. Many cases are caused by pollution that reducing fishery productivity, however, in lake toba case, fishery is the problem. Does anyone of you have idea about restoration of this lake?
It seems that organic pollutant came into the lake water that causing leech and louse booming..
Thanks..
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    Usually these kinds of nets are called Ghost nets, since they drift around. They are also a problem to the open sea.
     As mentioned in the article you shared the fish dies eventually after struggling to set free from the net. As per my understanding- the more organisms die, the more BOD increases, which in turn causes anoxic conditions which kills more fish and cycle repeats. Lakes are a closed body of water where the impact will be higher and faster.
    The primary way to tackle this will be to physically remove these nets and  secondarily to implement laws  and awareness.I have found an article by FAO which states some mitigation methods, which might help you.
All the best!
Hope to visit the lake some day, hope it retains it's pristinely I saw via google images.
Regards,
Purva 
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I am looking for information relating to population level responses to diminished sea ice, specifically after the mortality event on Wrangel Is in 2007. I am interested in gathering literature from the Russian side of the Bering and Chukchi Seas. I have only been able to find the following 3 docs:
Kochnev (2002) Factors causing Pacific walrus mortality on the coastal haulouts of Wrangel Island
Kavry et al. (2008) New coastal haulouts of walruses--response to climate changes
Ovsyanikov et al. (2008) Unusual Pacific walrus mortality at Wrangel Island in 2007
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 Hi Anatoly,
Yes! Your emails were most helpful, so glad we connected. I will continue to follow your research here on ResearchGate.
Jenell
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The genus Ceratium and Dinopthysis are widespread species in marine water and its important of red tide phenomena in the marine environments       
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Thank you Malcolm 
But please  I will discus this subject with some scientists in phytoplankton  taxonomy.Also are this information is documented in British Museum. I hope you all the best 
Regards  
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I m looking for some literature that describes the method to measure the trophic level transfer efficiency in marine ecosystems directly on the field in-situ. 
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Hello. Have you had the opportunity to read the chapter   "Bevelhimer, M.S. and Breck, J.E. (2009) Centrarchid Energetics, in Centrarchid Fishes: Diversity, Biology, and Conservation (eds S. J. Cooke and D.P. Philipp), Wiley-Blackwell, Oxford, UK, doi: 10.1002 / 9781444316032.ch7"?
In my opinion, it can help you with your need.
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I would like to know the material that was used for Pico OWC turbine. May someone confirm please? Pico is a oscilating water column plant placed on Azores Island.
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Dear Surender. Thank you a lot! Any way, Had you some information about  use of aluminum alloy to manufacture OWC turbine type runner?
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Is the Fermentation a microbial process? Why does this reaction occur spontaneously despite that this reaction is an endergonic process? If it belongs to microbial respirations, what is the advantage of this reaction for microbes, to obtain hydrogen or others? But it is an endergonic process!
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Endergonic reactions are always coupled to exergonic reaction to make the system work, the overall difference in free energy must be negative. Part of the process is to build new cell material and require energy, that has to be supplied by the degradation of energy containing molecules into lower energy products.
That is why anaerobic degradation usually yields less energy, because the final products still contain a fair amount of energy compared to Carbon Dioxide and water, the normal end products of aerobic reactions.
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I am conducting a survey which i will use as primary research for my extended project. 
If you can you may, State which of the following is the most destructive fishing practice. You may also give a reason why you choose that.
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Hi Alex. I fear that the answer depends on what you understand by "destructive" and what are you focusing at when assessing the effects: endangered species, community-wide effects, ecosystem services, or other.
Destructive can be translated into a number of attributes as being non-selective in the target, persistent in its effects, or effective in removing individuals. From this perspective, explosives and cyanide are the less selective and effective, while ghost fishing is the most persistent and less effective.
When one comes to focusing on response variables to assess the severity of the effects, shark finning remove top predators that are both important in structuring the community, can eventually lead to the alteration of ecosystem services (for example through releasing prey fishes and thereby altering the balance between coral-dominated and algae-dominated ecosystems) and generally endangered.
Still one can put the question in the perspective of wide-scale management for conservation purposes. Then other practices like bottom trawling (cited in the previous post) and also drifting nets would have higher impacts. The former because of its spatial extent and pervasive effects through communities and ecosystems. The second because its impact on charismatic species like dolphins, whales and turtles, which raise public concern and trigger in-the-field actions.
Possibly a multivariate approach in which you combine the scores given under different criteria for each activity, tailored for the societal values rooted in your study area, would provide a more complete albeit perhaps not definitive answer.
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If this is also possible through remote sensing, then I think links with scientists working on Turtle would also be important...
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Thanks 
Regards Carmen 
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Dear all 
In order to pursue closed mesocosm study on zooplankton and phytoplankton, I'd like to know the amount of innoculum to be inoculated for mesocosm tanks with capacity of 100 liters.  Please also advice me with insights about closed mesocosm. 
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Hi Umer,
Thanks for sending the details. I’ll put my response here in case other people want to chime in with suggestions and comments.
I don’t know of any formulae for how much to dose a mesocosm/microcosm with, except for the work of Frieda Taub in the 1980s-90s (Taub, 1989, 1997), where she had cultures of particular species and counted in various numbers of each.
Taub, F.B. (1989). Standardized aquatic microcosms. Environmental Science and Technology 23, 1064-1066.
Taub, F.B. (1997). Unique information contributed by multispecies systems: examples from the standardized aquatic microcosm. Ecological Applications 7, 1103-1110.
If you think about why people use mesocosms, this makes sense. Mesocosms are usually intended to model some real-life environment on a smaller scale, with replications so you can do manipulative experiments with statistical analysis. Therefore the quantity inoculated will vary depending on your experimental question and which environment you are intending to model. Often people just use water from the site where they are working, without concentrating and dosing, so the density of organisms matches the environmental densities in the field.
There are a number of things you need to consider when deciding on your dosing density. You need a high enough density to allow you to take sample volumes with enough organisms to give statistically sound results, but it’s preferable if you don’t have so many organisms that the density is no longer environmentally relevant and starts to cause major changes in the conditions in the mesocosms (dissolved oxygen fluctuations, nutrient changes and so on). If you are expecting large decreases in the populations, think about whether you'll be able to get decent samples from lower densities. If you can, have a chat with a statistician about the likely power of the experimental design you are choosing, and what will be the best way of doing the analyses. If you are testing toxicants, have a look at papers by Paul van den Brink, Theo Brock and their co-workers for ideas on experimental tests in mesocosms. Alternatively, if you can find any reported studies similar to what you are planning, they may give you a guide.
My experience has mostly been with macroinvertebrates in freshwater artificial stream mesocosms, which are a bit different from tanks with plankton, but the issues above would apply to any systems. Another issue that regularly comes up in mesocosm studies is variability among the replicates, so the more replicates you can set up the better!
All the best, Anne
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Marin samples?
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My best guess is also for a squashed solitary tunicate. It almost looks as if the body has been mostly squeezed out of the tunic. 
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Can we make pearl from pearl oyster in only one year? How much shortest time it will take to produce a pearl? without the restriction of type and shape of desired pearl.
If there any literature about it especially reference to Pakistan then please do share with me. 
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I already have this link but THANK YOU for your contribution.
Regards!
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I'm looking for reference and formulae widely used for calculating emission of NOx and SOx in marine diesel engine, medium speed mainly
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The SOx emission depends on the sulfur content of the oil and not on the load of the engine. Hence you can calculate this easily with a mass balance. For NOx you will need a suitable model for the combustion process which is more difficult to deduce. At least you can look for some data in the literature to get an idea of how many NOx approximately you will have.
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In the recent years (5 to 10 years), the flow of groundwater toward a dam reservoir contains about 5 mg/L of H2S. This sulfur was absent in the previous years. The sulfur can corrode dam facilities. Is it possible to control entrance of sulfur (that is mainly derived from geological units) by some mechanisms? Is it possible to introduce some electrical charges in upper sections to change the Eh of groundwater? Does changing Eh values can change the position of Sulfur (S) in Eh/pH diagram so that a neutral S is achieved? 
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Dear colleague,
You can use hydraulic barrier to prevent such groundwater flow. This can be achieved through using surface water in the reservoir itself. 
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marine conservation
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Are you referring to Marine Key Biodiversity Area? and Marine Protected Area? They are practically the same. They may differ on the target species or resources to be protected and conserved.  MKBA could be a protected area focused on  an endangered species or a charismatic species with the likes of whale shark, marine turtle, dugongs, etc. An MPA on the other hand, tends to protect and conserve the whole area of reefs, seagrass or mangroves, or interconnected several coastal habitats, usually aiming to improve the conditions of the area, in terms products produced and services delivered.
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I just want to calculate biomass from marine trash plants/animals from boat/trawler, considering as quantitative method. Many things are discarded by fishermen. Those trash materials may be valuable or not. I want to collect the trash biomass monthly. 
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Sir, I just want to some standard method for my own work as a preliminary work.  
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I'd be grateful for any information on a robust in-situ method to estimate the biomass of a sediment-entrained macroalgal (Gracilaria sp.) mat. Importantly, the approach must not involve the physical removal of the mat from the benthos. Working water depth  ~0.5m.
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Looks like one has two potential options here.
1. Initially stain (e.g. using Calcofluor white) the plant in the field, then allow x time for measurable growth to occur (if that's what you're interested in). Return to the field, extract entire plant from benthos, take back to the lab and, using UVB photography techniques, estimate growth rate based on old (stained) tissue vs new (not stained) tissue. To estimate initial biomass, cut off all new tissue and weigh remaining plant.
2. As an invasive alternative, if possible, delicately remove plant (including below ground parts) from the benthos, weigh it, then delicately "replant" it. If one is interested in measuring growth rate/nutrient demand,  remember to allow an appropriate length of time for sediment physicochemical properties to equilibrate/stabilise before taking any measurements.
I'd be grateful on any feedback regarding either approach, particularly 2.
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Hi everyone,
I need some good article that review the current applications of remote sensing analysis applied to the marine sector.
In fact, I am curious about which type of systems are used (active or passive) and the spectral resolution required for most of the marine remote sensing techniques.
In particular, given that Landsat is free, its moderate spatial (30m for multispectral analysis) and spectral resolution is enough or we need more spectral resolution (hyperspectral, or MODIS-like sensors) ?
I imagine that water, filtering the longer wavelength is a major limit for multispectral sensors, especially in depth greater than 15 m (?).
Thx for any help!
Nic
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I'm currently researching Puerto Rico's military history and I'm hoping to gain some insight into daily routine or lifestyle of a Spanish soldier. Details such as how often drills were preformed, living conditions, morale etc. would be wonderful. 
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@Anicka: are you speaking spanish? - I guess this will be necessary to get information out of the Spanish National Archives (also I am not so sure if you will find the special information about Costa Rica you require).
You probably may find some information in: The history of Puerto Rico, from the Spanish discovery to the American occupation.
This book is also available as free pdf on: https://memory.loc.gov/service/gdc/lhbpr/08353/08353.pdf
If you speak spanish, I would rather go to the Archivo General de Puerto Rico, which, I guess, will have more information about Puerto Rican military history:
Hope that helps a bit.
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Is there any mini probes or devices which I can deploy to track real time changes of salinity in seawater?
I have deployed probes to record changes of temperature and light penetration in the seawater before. However, I can't find any probes which can be deployed and record seawater salinity in real time.
Is there any such devices in the market?
Thanks for the attention.
Cheers,
Boo
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Thera miniature sensors produced by Star-oddi. Please look at http://www.star-oddi.com. I used temp sensors and they are quite reliable.
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Hello everybody,
Someone found this bone in the sea (Fethiye, Turkey). Is there anybody to identify it?
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Hello.
I think this bone is a hyoplastron.
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Has anyone tried to get wave information (e.g., period) from a Hobo accelerometer? We had some mounted ~70 cm above the bed at 6 m water depth, and I'm curious if the data could be used for an undergraduate project.
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Hi Emily:
In theory you can relate accelerations to wave motions hence deduce wave characteristics from measured accelerations (some wave boys use this principle to "measure" waves). Whether you can get wave information from the accelerations or not, will depend on the accelerometer specs and in its response to wave motion. For the later is very important how the sensor is moored and how this mooring affect its capability to "follow the wave".
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Is there any formula for that? This relates to the carbon cycle in water.
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Any body can provide the formula to calculate original total organic carbon (TOC) from present day TOC.
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Currently working on Marine mollusk, kindly guide me. How to get population status of any marine mollusk.
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We use a grid-plus based sampling design for benthos in the Wadden Sea. I attached the publication. Depending on your question/effort you can increase or decrease the grid size. For looking at growth, mortality and recruitment patterns etc. you need to keep it up for several years.
Good luck!
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Recently I found folliculinidlike epibionts on series of deep-sea tanaids (exceeding 4000 m) and as I noticed Folliculinidae are mostly known from shallow-water areas. Does anybody known records of those ciliates from deeper parts of the oceans?
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Ok, the first question was not very lucky so I am updating it - maybe it will be just easier to ask you for identification of those epibionts (Bryozoa or Ciliates?). They are deep-sea forms, with transparent and greenish lorica, size about 0.3mm
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There are n number of references describing energy cascading hypothesis put forth by  Kolmogorov. According to this theory (hypothesis), the disturbance in the system is propagated though large eddies to small scale eddies till the viscous forces take over inertial forces and subsequently it is dissipated by the viscosity of the medium. Now i have problem visualizing this process.
For example if we consider a water column (sea system) using layered approach ( topmost layer close to the sea surface and bottomost layer close to seabottom) and lets say surface is perturbed vertically by a huge stirrer e.g wave breaking which is removed after some time:
how should the distribution of eddies be visualized in such a system ? Will it be like smaller eddies enclosed within larger eddies for each layer  or  larger eddies formed close to surface and smaller eddies in the subsequent bottom layers? 
Any explanation in this respect is appreciated.
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Filippo:
Thanks for your interest in the debate. The point here is IDEALIZED turbulence, and you talk about physical oceanography which contains much more processes, and turbulence is only one small element, however extremely important if it comes to deep-sea mixing when the time scales involved are of climatological relevance. Further, the case you skech contains thermal and maybe haline stratification etc. But the initial question was about idealized turbulence in the sense of Kolmogorov and Landau, if I am not in error. Maybe the attached papers give you a hint where to go, or you have a look into the collection of papers in the book MARINE TURBULENCE, Cambridge U. Press 2005, edited by Baumert, Simpson, Sündermann.
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Hi all,
I'm looking for references regarding the implementation of WW3 for the NE Atlantic by IFREMER. I have access to the hindcasts through the IFREMER ftp but I can't find any reference regarding the implementation. Can anyone help with this. 
Thanks in advance!
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Hi guys,
the latest hindcasts are at
if you are looking at rectangular grids, yes the latest reference is Rascle & Ardhuin (2013). For the triangle-based grids, there are extra coastal effects described in Roland and Ardhuin (Ocean Dynamics 2014) :
And if you are interested in infragravity waves
the proper paper would be Ardhuin et al. (Ocean Modelling 2014)
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Using OpenFOAM or Star CCM+
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What method are you planning to use? LES? RANS?
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I'm starting a research project on modeling salinity pollution in coastal waters caused by desalination plants and methods of reducing salinity of returned water in desalination plants. I appreciate If you would let me know about the most suitable software for modeling desalination pollution and information about similar projects.
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Hi,
I think that the MIKE software developed by DHI has a module for modelling problems such as desalination. Also, the MOHID program, developed by Maretec / Insituto Superior Técnico in Portugal (http://www.mohid.com/) has a similar module, as it can simulate the trajectory and dilution of fluids associated to outfall jets.
I hope this can help.
Regards,
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I need to measure PAR value of particular depth using Giovanni Level 3 products of PAR and Diffuse attenuation co efficent 490 nm.
Please suggests to me any models or equations are available to measure that particular depth PAR using the Level 3 products of satellite data.
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First I believe you may also be able to obtain K_PAR from the level 3 Giovanni. The equation that you need to use for PAR is:
PAR(z) = PAR(surface)*exp(-K_PAR*z)
There are many assumptions in this equation (mostly due to the fact that PAR is the spectral integration of spectral irradiance and the spectral irradiance attenuates differently through the water column) but it will be  a good first guess. 
Good luck
Collin
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From Ocean color algorithms, for retrieval of chlorophyll the band ratios used are 443/555 (low chlorophyll content), 490/555 (medium chlorophyll content) and 510/555 (high chlorophyll content). This is because at different concentrations of chlorophyll the value of radiance at 555 nm doesn't change much. But why the ratios cannot be like 555/443, 555/490, 555/510??are there any reasons why we shouldn't take the ratios as i have mentioned above??
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I send back link as requested, shall you find it in keys ocean color nasa:
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I want to determine light intensity profiles at different depths (down to 1000m) in the North Atlantic ocean. Is there any databases which provide this information ready available?
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Dear Peter,
You may find other indications in Paulson and Simpson (1977) JPO 7, 952-956 and in Prieur and Legendre (1988) in "Toward a theory on biological-Physical interactions of the world ocean" (Elsevier, New-York). But the best for you is the climatology of mean optuical properties of Simonot and Letreut (1986), JGR, 91, 6642-6646 that will provide you the Jerlov's coefficients for the North Atlantic basin
Best
G.C.
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These specimens were photographed just after collection. A generic identity may suffice.
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Hi Amed,
What deapth? Looks like Mesothuriidae to me, at least the first two
cheers- yves
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My thesis is regarding marine macro-invertebrates and I'm wondering if there is an existing database for it.
Thank you! :)
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You can see also the European register of marine invertebrates including also the closest areas such as south mediterranean coast
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Hello experts,
I'm trying to apply one-step nonlinear model predictive control (NMPC) for 3 degree of freedom nonlinear model of the ships(the system is nonlinear affine). The state weighting matrix  is selected to be diagonal. The problem i face is that the controller can not track the position states due to the zeros corresponding to them in the control matrix g(x) (see the attachment). 
i think changing the matrix Q, may lead to a solution but i couldn't do that by trail and error and i don't know any technique for selecting it.
Thanks in advance
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As a general advice I would say: when you are setting your MPC problem up you should choose your weighting matrices based on the following criteria:
- stability and feasibility of the underlying problem should be achieved. 
- elements of the weighting matrices should be first normalized and then magnified based on their importance.
Generally for the first criterion there is no solid theory in the context of "NMPC" based on my best knowledge, although some results may be found in the literature.
Regarding the second factor the simplest way is to consider physical features of all states and obtain the maximum and minimum values they will achieve in the normal operations. Alternatively, you can first design a simple controller (e.g. PID) and run the system in different points, then you can estimate min/max of each state. Finally, you can first normalize all states and so on....
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How can we measure the deviation of acoustic waves in water due to change in speed of sound within water caused by changes in pressure, temperature and salinity.
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As you know, ray paths
1. follow straight lines wherever the gradient of the sound speed is zero (constant sound speed);
2. bend wherever the gradient of the sound speed is non-zero (changing sound speed);
3. bend smoothly wherever the gradient of the sound speed is non-zero and finite (smoothly changing sound speed);
4. bend discontinuously wherever the gradient of the sound speed in infinite (at a reflective boundary or interface between distinct layers.
The key parameter in all cases is the gradient of the sound speed (emphasis on gradient). So the relationship that you want to explore quantitatively is the relationship between the 1) gradient of the sound speed, and 2) degree of ray bending.
Presumably you are most interested in case (3) above, smooth ray bending.  A simple example for mathematical analysis occurs when the gradient of the sound speed c is constant in water depth z (dc/dz = constant, not equal to zero), and zero in the horizontal direction (when there is no horizontal ray bending). Then it can be shown that the radius of curvature R of the ray path in a vertical plane is
  R = - 1 / (dc/dz X ray_constant)
Where dc/dz is the vertical gradient of the sound speed c, z is positive downwards (i.e., z increases with depth), and the ray_constant is constant at all points along the ray,
  ray_constant =  cosine(theta(z)) / c(z)
   theta(z) = angle of the direction of the ray path; with theta(z) = 0 degrees for a horizontal ray
  c(z) i= vertical sound speed profile as a function of depth z
These equations can be found in equations in Hovem’s article in link provided below (see his equations (1) to (4))
More generally, for other kinds of vertical sound speed profiles c(z) that have changing vertical gradient dc/cz, you may need a
1. ray-trace programme to see and quantify the effect of changing sound speed on ray bending (mathematics of general ray bending are also described by Hovem). Ray-trace programmes that you might consider using can be found for download in the second link provided below; and you may need to
2. develop a measure of the overall measure of the effect, degree, impact, or sensitivity of ray bending which, when applied to the outcome of ray-traces forecast by the ray-trace model, assesses the deviation of ray paths to particular changes in the gradients of sound-speed profiles, in a way that is especially suited to your particular application.
Ronald
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And if, what are their web sites?
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Experiments - I'm not sure - but in Australia both these groups are certainly well set up to detect changes... http://reeflifesurvey.com/ and http://www.redmap.org.au/
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we are trying to study Na/K pump on squid giant axon. But can not fish one in florida during summer time. So we are trying to get one from Woods Hole Marine lab. Just wonder how long it can survive in the sea water via shipping?
Thank you
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Hi Pengfei!
Please, see the attachment. For further information, refer to: Gilbert, D.L; Adelman, W.J; Arnold, J.M. "Squids as experimental animals". The attached file was extracted from this book.
I hope it helps! (Please uovote if you liked)
Best
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I have a PhD student working on developing a model for estimating overhead cost of building ships.  He has many good papers but they all date to 1990s and early 2000s. He needs more recent papers on ABC and their advantages on conventional cost systems and models. Thank you. 
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REZA:
GARY has provided you with his work -- and this may be all  you require.  However, you might also consider simply contacting the earlier authors -- by phone or e-mail and ask if they have any suggestions [Gary has given you what he had, so the other authors remain to "chase."}  This technically-termed  "informal literature search" approach is often surprisingly effective.  Personally, however,  I have found it usually more effective to first do a "formal literature search" that is aimed at articles that have cited the  either the earlier articles at hand, or those provided by Gary.    Looking at these in turn, you may then identify cites of their work and further continue until you have citations and even pre-prints of work in press.   This "follow-the-citations-forward" process is well-known to research librarians (aka, "Information Scientists")....                                                                                                              One way to start the process is to Google the word Scholar  and in the resulting scholar related articles find and open "Google Scholar."   When this is opened, then type in the authors names for any article you have at hand in the format: Cokins G, Nextauthor H (or whatever).   I did this entering Cokins G and added terms "and up front costs of building ships"   My second result [orders may be slightly different with each person] was that below which is Cited by 114 which you then click-on, and sort through for articles of interest to further click-on...  
ALVAH
[BOOK] Performance management: finding the missing pieces (to close the intelligence gap)
G Cokins - 2004 - books.google.com
... 85 Activity-Based Management Model Design and Principles: Key to Success 98 Operational
(Local) Activity-Based Management for Continuous ... Gary Cokins garyfarrns@aol.com (I welcome
your e-mail.) ... modeling the data into information, and Web-reporting it to users. ...
Cited by 114 Related articles All 3 versions Cite Save More
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In a European/UK context.
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I use the numerical model Mike21 and Litpack to study the effectiveness of the breakwater.
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Please help me  know this
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Indeed, those are extended tentacles. The pink indicates damage and that regeneration (growth) is going on. Species: Fungia fungites.
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Offshore waters of Pakistan
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Dear Dr. Kazmi, this is a squid yes.... if there is a picture taken on the dorsal and ventral side, it might be good. Fins can at least help one to narrow down on the family and then structures in arm, suckers, hectocotylus, all can be helpful in identification. If your specimen is from Arabian sea, yes, Todarodes genus has been reported. May be the attached file might be of some help. All the best..
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I am interested in the tolerance to low salinity in marine invertebrates early life stages. All the studies I have come across so far always use chronic osmotic stress although organisms in the field are likely to be exposed to episodic osmotic stress. I am inclined to assume that chronic osmotic stress would be worse than episodic stress (in marine species, not estuarine) but would like to know what other researchers think on that subject.
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Hi Agnes, 
I agree with Seyyed and Ray, if an animal survive the initial salinty stress, a long term salinity challenge will likely have consequences for the energy budget of this animal. The rate of change is crucial, as it will determine the immediate survival of the animal as this must somehow maintain homeostasis within tolerable levels. This is, of course, specie-specific. The magnitude of the salinity change (osmotic gradient) is also important, as some animals (crabs) are able to osmoconform over a wide range of salinities, not investing much energy.  Some of our work, might be of interest as we talk about short and long term responses.
Urbina M.A, Schulte P. M, Bystriansky J and Glover C.N. 2013. Differential expression of Na+, K+-ATPase a -1 isoforms during seawater acclimation in the amphidromous galaxiid fish Galaxias maculatus. Journal of Comparative Physiology B. 183(3), 345-357.
Urbina M., Paschke K., Gebauer P & Chaparro O.R. 2010. Physiological energetics of the estuarine crab Hemigrapsus crenulatus (Crustacea: Decapoda: Varunidae): responses to different salinity levels. Journal of the Marine Biological Association of the United Kingdom 90, 267-273.
All the best, 
Mauricio
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East Pacifdic,West Pacific,Southwest Atlantic and Southwest indian ocean subpopulaton were listed as as Critically endangered,Northwest Atlantic leatherbacks were listed as least concern & northwest indian ocean & southeast Atlantic subpopulation were listed as data deficient.
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Dear colleagues, MTSG web page (link below) include the last assessment done in 2013, using leatherback subpopulations: The text of the MTSG is "Globally, leatherback status is now Vulnerable. East Pacific, West Pacific, Southwest Atlantic, and Southwest Indian Ocean subpopulations were listed as “Critically Endangered,” Northwest Atlantic leatherbacks were listed as “Least Concern,” and Northeast Indian Ocean and Southeast Atlantic subpopulations were listed as “Data Deficient.”
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We started a crowdfunding campaign on indigog recently and we still need some help regarding outreach. we already wrote to a lot of newspapers and radio as well as some blogs, but most of them did not get back to us. Does someone has maybe some tips or do know a journalist who might be good to approach? Check out our Ocean Sampling Day Project on indigogo!
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I'm trying indiegogo now. I research child abuse effects on the brain and feel it is intuitive for lay people. It is tough to get people in your networks to respond. 
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What are the best satellite or aircraft remote sensing techniques for monitoring and mapping submerged aquatic vegetation?
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The best solution is to use hydroacoustic from a boat:
Winfield, I. J., C. Onoufriou, M. J. O’Connell, M. Godlewska, R. M. Ward, A.
F. Brown and M. L. Yallop. 2007. Assessment in two shallow lakes of a hydroacoustic system for surveying aquatic macrophytes. Hydrobiologia 584:111-119
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I'm looking for the latest EU-recommended standard limits for trace metal contamination in sea urchins.
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Follow my project report, you can able to find the reference
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We are now performing experiments in the laboratory with marine mussels to estimate the tenacity of the byssus threads to natural (mangrove roots, rocks) and artificial substrata (glass, ceramics). We want to construct a Stress- Strain curve, and estimate the tensile strength and the chemical composition of the byssus, and also to evaluate the surface  of broken threads using electronic microscope images. The mussel species are from the central Mexican Pacific and never been evaluated.
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Hi there,
This paper may help: Lowen et al 2013 Vol. 475: 135–143, 2013 doi: 10.3354/meps10106
Good luck,
Katie O'Dwyer
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Phytoplankton are the important sink of carbon dioxide, and field trials are under process to trigger their growth artificially
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Dear @Abhijit, "he first method (atmosphere-ocean flux) is based on the measurement of CO2 partial-pressure differences between the ocean surface and the atmosphere. Partial pressure is the amount of pressure that a particular gas such as CO2 within a gas mixture (the atmosphere) contributes to the total pressure. Partial pressure is thus also one possibility for quantitatively describing the composition of the atmosphere." The article Measuring exchange between the atmosphere and ocean follows!
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We have collected this specimen from sea. Is it algae or anything?
Please help me to identify this plant. 
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It looks like a gorgonian, but it would be useful to have photos of sections under the microscope ....
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Part of my research presently is using ArcGIS 10.0 in Hypsometric analysis. But I need to know how the relative area (a/A) and relative elevation (h/H) are calculated so as to obtain hypsometric curve.
Please answer in regards to
where a = area above a particular contour, (how this is calculated)
          A = total area of the sub watershed above the outlet
Also, I would like to know does h represent minimum elevation of a sub-basin and H the maximum basin or sub-basin elevation.
I will be glad if someone can give me detail explanation on how to do this using ArcGIS or any other methods.
 
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There is an excellent freeware script for ArcGIS called Calhypso by the Unersity of Granada and UGR-CSIC (Spain) that does an easy and automated hypsometric analysis and can compute multiple hypsometric curves for basins.
You can find the softare here
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Mostly can be seen in coral reefs in the small Pacific Islands, coral meadows.
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Climate change makes rise in seawater temperature.Rising sea temperatures cause changes in pH and some chemical parameters.
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There are so many approaches to measure NEP (e.g. statistical, biogeochemical, remote sensing etc.). How is NEP associated to carbon sequestration?
Biologically fixed carbon could be retained by the system at a varying scale (from seconds to 1000s of years). Which one can be considered as real sequestration?
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For my studies, I define NEP as primary production above and beyond metabolic needs of the primary producers (or all primary carbon that can be consumed or lost in the system). NEP can then be utilized by primary consumers or enter the detrital part of the system. I then breakdown the detrital pathway as detrital consumption or export out of the system. After all of these terms have been taken into account the residual carbon (NEP) should enter the remaining path....burial. This is the pool that can be considered sequestered given a defined timeframe. Very over simplified, but this sheds some light on my hierarchy.
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I want to know the reason.
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Thanks Maljkovic, I found the answer in this paper.
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Looking for groups/individuals seeking to apply ANN/CAS to forecasting marine ecosystem indicators spanning multiple trophic levels.
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Randall,
That's great, I need to look into in detail. Shame I missed your reply. Had one of our young minds with Beth Fulton all of Feb 2014 (Artur Palacz). Hope you had a chance to meet.
I was publishing the question above to see if we can find colleagues out there that might be having parallel headaches with ANN validation through observations, so that these guys learn from each others headaches.
Ivo
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My friend sent this picture to me and asked for the scientific name of it.
Can anyone give its scientific name, or suggest how to identify it?
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plz see the head region
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Might be contamination either bacterial or fungal in a variety form looking like an insect. Rather than testing others knowledge could you not give some clues to get correct reply from others.
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There are many studies about the negative impacts of rising sea levels due to climate change. Are there any studies on the positive side of this phenomenon?
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Thinking for a while about this question allows me to realize that we need to test the flooding hypothesis by the increase of sea-level. We live in a habitable planet. Sea level may rise and temporary cause destruction to the coastal cities around the world. However, this will not last for long. Diversity of species (species richness) will increase due to warm and more humid climate. The earth will recover so fast similar to the fast diversification occurred after the K/Pg boundary when diversity and radiation of species increased only 50 ka after the asteroid impact (Pospichal, 1996). We are going to see many positive effects, however, not in our time. This probably will take from hundred of years up to thousands of years.
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Any suggestions and articles
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I think system dynamics methodology will be better for modeling and evaluating scenarios, strategies, and policies in complex situations such as marine environment
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In marine protected areas, does anybody know or study what are the impacts of anthropic activities (propellers, pollution, drilling, tourism...) on Gorgona species like Leptogorgia sarmentosa?
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Hello Virginie
I'm sure that if someone know or study what are the impacts of anthropic activities on Gorgona species like Leptogorgia sarmentosa, Didier AURELLE who work on Gorgona will know him or her. http://www.cigesmed.eu/Nouvelle-traduction-Didier-AURELLE. You can also contact Stephane SARTORETTO who is well interested in the taxonomy and ecology of Gorgonian. They are both on researchgate.
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Most of the current research is geared towards modeling, measuring, and predicting the aerosol formation caused by waves breaking at sea. What purpose do these models serve apart from the exchange of gases in aquatic environments?
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The scatterring produced by gases and aerosols in the atmosphere are very important for remote sensing techniques in the visible and near infrared regions. Aerosol particles visible in satellite imagery can also be used to study dust storms, wildfire smoke, volcanic ash and urban pollution dispersion. Aerosols also influence the earth radiative heat budget and are one uncertainty in studies prediction global climate change. That´s is a very short answer to your question. The are several books about atmospheric aerosols. Ex: http://www.amazon.com/dp/3540262636/ref=rdr_ext_tmb
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Such as public-available database or government agencies.
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USGS has a searchable database of monitoring stations. Are you in Florida? Check DBHydro run by the water management districts.
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Indicators
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Best way forward to answer this question is to focus on studying the impact of submarine volcanic eruptions through the switching on of hot seawater. For example the submarine eruption of the El Hierro volcano in the Canary Archipelago from October 2011 to March 2012 documented by Wikipedia (http://bit.ly/IE19El_Hierro). Fish kills is an obvious visual impact but what about the rest of the marine ecosystem?
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The rate of acidification is higher in the Persian Gulf. I will appreciate getting guidance on best methods to determine argonite unsaturation.
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Thanks Jeff I have pH and total alkalinity, temperature, salinity data. I will download CO2SYS and try using it. Will update you guys on outcome.
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Check out these drafts recently released by the Australian and Queensland governments on the strategic assessment for the GBR coastal zone...
We are also working on a systematic conservation planning project specifically for the GBR coast (where development threats are numerous) as well. This is looking at cumulative impacts of all development types on values of the GBR that include corals. Check out the documents at for more info
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I'm learning how to manipulate and analyze satellite derived Chlorophyll data. Going through literature I haven't figure out yet whether it is convenient to log-transform data before manipulation or not. I'm using Globcolour, GSM merged data for a small ROI in the Caribbean.
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It entirely depends on the application and the specific data at hand. On a global scale, chlorophyll-a follows a lognormal distribution, meaning that it can vary over several orders of magnitude (say, from 0.01 to 30 mg/m**3). However, it is possible that for your small study area the data have a more limited range (e.g., from 0.1-1 mg/m**3), in which case transformation may not be necessary.
There are at least two reasons why you may want to log-transform:
1) For mapping/plotting. Depending on the software you're using, you may want to transform simply for better visual display, as some programs are not able to display lognormally distributed data very well since they use linear binning in the color palettes. In this case it's just a visual trick.
2) For analyses: many statistical methods assume that:
a) The univariate distribution of your data is normal, and
b) The bivariate relationship with other possible explanatory variables is linear.
Log-transforming Chl-a takes care of that statistical assumption.
But only you can determine if this is necessary, depending on the range and the variance of the specific data subset you have extracted.
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I have encountered single cells of the marine diatom Chaetoceros sp. in estuarine surface water samples, and I have found them single always, in a two years time. Is it a specific property or they tend to be solitary due to difference in environmental parameters?
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I have a given wave time series measured at a given position in a wave flume. I would like to know how to determine the wave series that has to be generated at the flume paddle in order to reproduce my measured time series. I appreciate any help on the topic.
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Hi Marc. I think this can get really complicated. The wave train (spectra) evolution from the paddle to the measurement location will depend on the spectrum bandwidth and nonlinearity (Ursell). For Ur>>1 significant (nonlinear) energy transfer and phase modification can take place in a relatively small distance. On the other hand, there are some experimental evidences of recurrence (quasi-periodic return to the initial conditions of the system) in deep water. I would suggest you to revise the literature regarding recurrence [e.g., Fermi et al. 1951; Elgar et al. 1990 JGR]. Hope this could be of any help.
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I want to work in the Palk Strait region in India.
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The standard method you are looking for and Sezer is most probably referring to is ISO 13903:2005 entitled "Animal feeding stuffs -- Determination of amino acids content". The Indian standard IS/ISO 13903:2005 is available online here https://law.resource.org/pub/in/bis/S06/is.iso.13903.2005.pdf
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I know the researchgate from Jill Baker. I hope to get your comments for my trouble now. I want to introduce transposon Tn5 to marine bacteria. I think electroporation is the effective and simple way to introduce DNA into host livin cells. But now I get trouble. Before electroporation, it need to wash cell by poration buffer and then resuspend cells in the buffer. My marine bacteria seemed to be very sensitive. Normally, cell will be washed by ddH2O containing 10% glycerol. I tried to take colony from agar plate and suspend into ddH2O containing 10% glycerol, and then spread on the agar plate. But no colony appeared on the plate after incubation. I think my bacteria were lysed in this condition (no salt). I also tried to use other electroporation buffers containing MgSO4, sucrose, HEPES, glycerol. And I aslo checked bacterial viability under this condition. But no colony appeared. Now I donot know how to treat this marine bacteria suitably before electroporation.
Thanks alot
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Hey Nguyen!
Not sure if this could be done, but if the treatment with buffers is a problem in electroporation, have you considered trying transformation by heat shock? It's quite simple as well and you could see if it works with your marine bacteria.
If you find a way to solve your problem, please let us know. :)
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For about 3 years we have video monitored wild lobsters. The purpose of video surveillance is to obtain detailed information about the activity of the lobster, in light of the different seasons and different environmental conditions.
The lobster house with the video camera is situated outside in the sea. For details, see link attached.
We would like to mark/tag individuals to enable data on individual level. We would like to get suggestions for marking techniques of wild lobsters which could be identified on an underwater camera. It is important the the marking is ethical and ensure that the lobster don't endure pain or suffering.
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For spiny lobsters, colleagues of mine have used colored cable ties attached around the base of the antennae. They're easy to apply, come in multiple colors, relatively easy to identify underwater or in aquaria/mesocosms. You might be able to buy or make them fluorescent but the fluorescence signal would likely be lost underwater. The cable ties typically don't get fouled or wear off which can be a problem for some carapace marking systems.
If you're worried about loss through molting, there are a few papers that report use of sphyrion tags in lobsters. My recollection is that another paper used streamer tags to track tagged lobsters that had been released in an attempt to gauge tag loss (double tagging with streamer and sphyrion), but I haven't read these papers in a couple of years and I likely forgot some details. Try google scholar on sphyrion tag and homarus. The sphyrion tags are invasive and there is some tag loss. Moriyasu's paper indicates that mortality to tag loss isn't too high if you tag at intermolt as opposed to premolt. I think Lander's work indicates good tag retention through several molts.
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I am going to analyse coral transect pictures with this program CPCe that I just downloaded. What is the best way to utilize this software? Are random points better or uniformed points?
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Hi Yen Yi,
the programmers provide instructions on their homepage: http://www.nova.edu/ocean/cpce/index.html and a QuickStart PDF: http://www.nova.edu/ocean/forms/cpce_quickstart_guide.pdf
Regarding your question if you should use random or uniformed points: I would go for the random selection since you exclude biases from potential patterns (like sand strips or linear wave impacts or whatsoever) that might be present in the uniform selection.
Furthermore, I can recommend an article by Pante & Dustan (2012) on how many points should be used in Point-Count Assessment:
Good luck with your analysis!
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I used toluene to extract oil and grease in my sample. The reading output is in Abs 400.00nm and C.
The amount is the same, for example sample 1: Abs 400.00nm is 0.067 and for C also 0.067...
How do I do a concentration vs absorbance graph? I use 5g of my sample and same toluene
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How did you calibrate your instrument?
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I'm wondering if anyone has successfully used remote sensing (preferably multi-spectral aerial) to monitor/map near surface marine health? Specifically in the pacific north-west of north america.
I'm wondering if there is a known bandwidth that is provides reflectance from the seaweed, but not the water...
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Dear Cameron, if you are interested in near shore ecosystems there are three major problems in using Ocean-Color products, one is that these products use the blue section of the electromagnetic spectrum where there is major absorption by the Colored Dissolved Organic Matter (CDOM), which will interfere with the reflectance of chlorophyll. Other is that these products are 1km of spatial resolution, which may imply problems with land adjacency effects if your sites are near shore as Ana point out. A third one could be that near shore waters may be too shallow and the radiation in the blue penetrates deeper than for instance the red, which may imply problems with bottom reflectance contamination.
Although not studying microalgae but phytoplankton these two studies use a spatial algorithm using also the green besides the blue to ameliorate some of the problems I have just described.
Le, C., C. Hu, J. Cannizzaro, D. English, F. Muller-Karger, and Z. Lee. 2013. “Evaluation of Chlorophyll-a Remote Sensing Algorithms for an Optically Complex Estuary.” Remote Sensing of Environment 129: 75–89. http://dx.doi.org/10.1016/j.rse.2012.11.001
Le, C., C. Hu, D. English, J. Cannizzaro, Z. Chen, L. Feng, R. Boler, and C. Kovach. 2013. “Towards a Long-Term Chlorophyll-a Data Record in a Turbid Estuary Using MODIS Observations.” Progress in Oceanography 109: 75–89. http://dx.doi.org/10.1016/j.pocean.2012.10.002
Le, C., C. Hu, D. English, J. Cannizzaro, and C. Kovach. 2013. “Climate-Driven Chlorophyll-a Changes in a Turbid Estuary: Observations from Satellites and Implications for Management.” Remote Sensing of Environment 130: 11–24. http://dx.doi.org/10.1016/j.rse.2012.11.011
This other study below uses a NASA nonstandard product, fluorescence line height (FLH) to infer chlorophyll. The product used is based on an algorithm that uses the red section of the spectrum where there is less absorption by CDOM, less issues with bottom contamination, and the spatial resolution is better (250 m).
Moreno-Madriñán M. J.and A. Fischer. 2013. “Performance of the MODIS FLH algorithm in estuarine waters: a multi-year (2003–2010) analysis from Tampa Bay, Florida (USA).” International Journal of Remote Sensing. 34: 6467-6483.
Hope it helps,
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Can i do random sampling and how do I lay random points?
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Thank you
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The plant was collected from the low marsh (Spartina alterniflora) zone of a New England salt marsh.
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Thanks! S. maritima looks like the correct ID to me.
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What is different about the two types? Structure?
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Certain sponge species are adapted to freshwater environments. Their skeleton types allow them to live in either hard or soft sediments. Their pores allow them to filter the water around them for food. Inside the sponge, there are flagella that create currents so their collar cells may trap the food.
They're Iso-osmotic in Seawater i.e. have same osmotic pressure as seawater thus their ability to survive in marine systems.
Its fundamentally a structural adaptation to their habitat range.
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The ability of some harpcticoid copepod to convert diets intake into EFAs must be related with certain specific enzyme during the process takes place.
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Thanks for your respond. Is ELISA the only option? How about using SDS-PAGE?
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While I am performing marine microalgae (with and without aeration) culture in log phase light, a green color precipitation formed like cyanobacteria. After 5 to 7 days the culture is normal. Does anyone have suggestions?
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Well, if nutrients are depleted and they become normal, the ones that disapoear need to have radically different nutrient needs compared with the rest. Therefore, i am wondering if you are left with diazotrophs when they are normal? Please, use the microscope.