Science topic
Marine Ecology - Science topic
Interested in Marine Ecological research like demersal living resources and their community structrure. Primary productivity, Food chain, etc
Questions related to Marine Ecology
Does the Kelp Forest have a potential for being a good marine pollution sink?
Artificial intelligence (AI) is a rapidly advancing tool. It is heavily reliant on programming languages, data manipulation and analysis. As colleagues in the field of oceanography, I would like to know your opinions on the use of AI in this field. Furthermore, I would appreciate any recommendations for publications that could support your viewpoints.
It is important to be transparent about the limitations in terms of programming for the diferent subfields of oceanography, such as physical, chemical, biological, ecosystemic, and geological; how the incorporation of AI may lead to new disparities in scientific research; and how careful you would be with the use of these tools.
Thanks for your times!
I am hoping to get some help in identifying these flakes found in a sediment core from Trondheimsfjord, Norway. They are approximately 1mm thick. and 1-2 cm diameter (biggest, but most are broken into smaller flakes). They are solid, but easy to break. They react with HCl on light grey 'top side' but not on dark, rusty (?) 'underside' (see photos). Are they worm burrow linings? They only occur between 26-28 cm down core (although the core is only half a metre long) from about 500 m depth in the fjord. Thanks for your thoughts!


Hi all, I will appreciate if you could direct me to a paper where I can find the stomach pH in crustaceans. I am sure it will vary between species, yet any data will be useful and much appreciated.
Thanks
Hello! Between mid-April and throughout June2017 we carried out an extensive sampling to estimate sea urchin settlers through collectors placed on the bottom floor along the Sinis Peninsula (Westcoast of Sardinia , Italy).
We placed 100 collectors at five metres depth, on rocky bottom and Posidonia oceanica meadows, inside and outside the Marine Protected Area of Sinis (according to the method described by Tomas F, Romero J, Turon X, 2004) to evaluate settlement and recruitment of sea urchin Paracentrotus lividus in two contrasting habitats in the Mediterranean (Marine Ecology Progress Series 282: 173-184). Altogether we collected about 500 samples kept at -20 deg. in 70% alcohol. Moreover, we characterized sampling stations calculating habitat and landscape metrics.
However we found many other species of organisms, especially polychaetes, molluscs, crustaceans, other echinoderms, etc.
At the moment we lack resources to perform taxonomic work on these communities.
We are happy to send over the samples to anyone who could be interested. Considering we do have all the environmental data metrics, it would be great to identify biodiversity hot spots in the study area once we have the taxonomic data.
If interested, please contact me at: s.farina@fondazioneimc.it
Cheers!
Hi,
As I konw, like stable isotope, amino acid compound-specific isotope analysis, these methods can all used to identify the habitat use and geographic origins and migration of migratory species.
Can you tell me other methods also can be used to do this area. may be otolith of fish.
regards,
BIN
We will be conducting a survey for marine birds and mammals this summer and we were wondering if anyone has experience with using voice to text software to record marine bird/mammal observations during at-sea surveys? We are planning to use dLog survey software (R.G. Ford Consulting), or equivalent, which has a user interface with data entered into discrete boxes. Each observation is given a time and lat/long location once the user hits the RETURN key to log the observation. Given limited space for computer/handheld GPS/etc. near the observation platform, however, we would be interested in hearing if other researchers have been able to successfully use a voice to text software to record observational data. Such a system would help overcome the limited space issue.
I am reading about pilot projects of seed production of Ostrea edulis, found only some abstract from old paper mentioning north Spain, but I don't know if it is actually working in the mariculture companies on the Med.
What are the scientifically confirmed examples of changes in marine and ocean ecosystems caused by the probably faster global warming process and the increasing pollution of sea water toxic waste and assessments?
Please reply
I invite you to the discussion
Thank you very much
Best wishes

I'm wondering if some of you are aware of existing conversion factors for levels of metallic contamination in fish muscle tissues. In the present work, I'm focusing on metallic contamination, so not currently interested in lipid content of the tissues.
Depending of the contexts, concentrations are expressed relatively to fresh or dry weight. By example, working on muscle sample is more convenient when dried, but concentrations are expressed relatively to wet weigh in European directives, requiring conversion factors.
In most of the paper I read, concentrations are expressed relatively to wet or dry weight, and are then converted using a 5 times conversion ratio. But no information about the actual measurement of the ratio is provided, and I feel this value is largely empirical.
So, is someone aware of the rationale for this value ? Are you aware of papers specifically investigating this point ?
Thanks
I would highly appreciate it if my fellow ecologists (biologists) provide their opinion on the thoughts below [esp., shortly tell us which path may be more effective, if they know another way, if there is a recent breakthrough toward this goal].
To consider the effects of Acclimation and Directional Selection on populations' thermal sensitivity in the (mechanistic or phenomenological) modeling of ecological impacts of temperature variability (and climate change), we can follow two general paths:
(1) To produce enough empirical data to define simplistic indices of warm adaptation capacity (based on exposure temperature and duration) for at least some keystone species [a simple e.g., ARR; Morley et al., 2019]. Such indices can only be applied to models' outputs.
(2) To understand the GENERAL mechanisms (principal functional components) defining the heat sensitivity of various taxa [e.g., OCLTT, Pörtner, 2010], define how the component (quantitatively) relates to the capacity for rapid warm adaptation [no Ref.], and set (adaptive) feedback loops in existing models [a simple e.g., Kingsolver et al., 2016].
Hi guys,
So I am currently working on the methodology for a macroalgae decomposition study, assessing changes in weight and nutrient contents (specifically N and P) at varying stages through the decomposition process. My question really relates to the preparation of the samples for shipment to a lab for the necessary analysis:
1. Like similar studies I have read, I intend to dry the recovered material at 60 degrees C, and grind the thalli using mortar and pestle. I have read that liquid nitrogen can be used to make the use of the mortar and pestle more efficient, as it freezes the thalli making it more brittle. Since the liquid nitrogen obviously makes the material brittle enough to grind into a powder, is it still necessary to dry the thalli at 60 degrees C?
The only way for companies that carry out ecological activities to be implemented in the future is to surpass polluting companies in their field, being more competitive than them, through technologies such as Blockchain and innovation in production processes. Discover how carbon credits are going to help green companies be profitable and how prosumers are going to play a leading role in that process
Can cryptocurrencies be used to make ecology profitable?
I am trying to publish a couple of articles in order to improve my scientist CV...
I'm wondering if someone is aware of studies investigating the integration time of mercury in fish tissues, mostly muscle. In other words, when a Hg concentration is measured in muscle, is it the result of previous contamination during weeks? months ? years ? I found some papers investigating Hg dynamics in mammals or birds, but I can't find similar studies in fish. This information would be crucial when trying to infer trophic patterns from several biomarkers (eg stable isotopes, fatty acids or contaminants) with different integration time.
This can be detailed or anecdotal, quantitative or qualitative. Over the course of years or decades. Anything that reports changes in the size of the canopy forming species.
I need to compare our data to the acceptable upper limit heavy metal concentration in mussels which affect human health proposed by different countries.
It is experimentally proved that turf algae in combination with sediment prevents the settlement of coral larvae. My field observations are contradictory to it. I observed lot of new recruits on hard substrate which has been covered with turf algae and sediment. Is there any other factor which could aid the settlement of coral larvae on a turf algal substrate?
We are identifying a large numbers of detrital mineral samples from the marine sediments. We have excluded staining method because it takes a lot of time.
UPD: This week we have a great news! The deparment will function as separate one as it was during last 90 year and continue marine and fresh water investigations! We are realy happy and thankful to everyone who wrote letters and signed the petition!
________________________________________
I have analyzed the concentration of heavy metals in water as well as the intertidal sediment. I have not been able to find literature as to why the heavy metal content in sediment is more than the water. Can anyone help me? I would also like to know the permissible range for various heavy metals in marine water sample and sediment.
The specimen is under the genus Heterocarpus obtained from Indian coast between the depth range of 250-350. I would like to know the species level identification, based on rostrum deformed nature character of the Heterocarpus, it is doubtful. I Kindly request to identify the species.
Thanking you
Kuberan
From what I can gather, the various studies that have evaluated decomposition in marine and freshwater habitats have used different methods, and I'd like to know which of these two habitats typically has more rapid decay rates.
Hi,
I had originally thought that distinguishing between fixed and random factors was relatively self explanatory, however, having read an article on this very subject, I am now not so certain.
The author's decision tree (see below), particularly the part stating that any factor with 2-4 levels 'must' be fixed left me especially confused.
"A) Can I talk you out of including it? (solved – drop it from the model)
A) No I can’t talk you out of it? too bad. Go to B
B) Is it a continuous variable or has only a few levels (e.g. 2-4) → has to be fixed
B) OK, a choice is possible – go to C.
C) Do you want estimates of s1, s2,…,sn (perhaps because you have lots of data and so lots degrees of freedom to burn and are curious how sites differ)? →Fixed
C) Do you want estimates of σ2, perhaps because it saves you degrees of freedom you really need or perhaps because the variance is more interesting (or useful for variance partitioning) than a bunch of estimates of site effects nobody will ever look at? go to D
D) can you either keep the design really simple or are willing to give up p-values→Random
D) You’re kind of out of luck. Change one of your answers and try again"
The article also links to a discussion regarding the recommended number of groups for a factor to be random, which conforms with much of what he has said in his article.
I'm no statistician, so much of this goes straight over my head.
For my particular research question, I'm looking at differences in the composition and abundance of fishes associated with three different coral colony states (live, dead, overgrown by a particular 'coral-killing' sponge species).
I've collected my data from 6 sites, split between two islands. I've also recorded the particular growth form of each coral colony.
To summarise, my factors are as follows:
Colony state (live, dead, overgrown)
Growth form (encrusting, submassive, columnar)
Site (6; nested in Island)
Island (2)
I had originally performed Permanova (in Primer7) using colony state and growth form as fixed factors, with site and island as random. However, as per the advice of the aforementioned articles, I tried again with all four factors as fixed, which produced very different results from my original design. I've tried other combinations of fixed/random, which again, produce very different results.
Basically I'm just looking for any advice as to the correct way to proceed with this, and if anyone could provide a more definitive answer with how to determine the appropriate effect for one's factors.
Thanks in advance.
Dear researchers,
someone has a shapefile of marine sea temperature hotspots worlwide desribed in Hobday & Pecl (2014).
Thanks in advance for sharing.
Regards
Ignacio
I'm planing to travel on vacances to europe, probably to Portugal and perhaps countries nearer to Portugal, as Spain, France and Italy.
I'm interested on visiting labs, institutes, museuns related to my working areas (Fish and benthic ecology, as also environmental education), so, I'm asking for some recomendations from researshers from these countries.
Thanks in advance for any help.
Hi everyone! need to get the identity of this nudibranch. Collected from the trawl net gear operated at depths 10-50 m. East coast of India.
best regards
Deepak

I am looking to buy these IN STORE and not make my own. I only want to count the concentration of phytoplankton.
I am looking to preserve phytoplankton from water samples taken in the field. Has anyone tried tincture of iodine to do this?
The tincture of iodine I was looking at was made up of: 2.5% KI, and 2.5 % I2 and then half and half alcohol and distilled water (from the drug store)
The Lugol's solution I was looking at 10% KI, 5% I2, and 85 % distilled water (from amazon)
I am curious to know if I could use off the shelf preservatives instead of the having to buy the expensive ones online
Does anyone know what is the average stomach size (weight, volume) of an average common shark species like
Pelagic thresher (Alopias pelagicus)
mako (Isurus oxyrinchus)
blue (Prionace glauca)
scalloped hammerhead (Sphyrna lewini)
Recently, there is an emerging series of studies querying that organic carbon burial in blue carbon ecosystems is largely offset by calcium carbonate. Is it true? As I know, calcium carbonate can only be decomposed to calcium oxide and carbon dioxide at temperatures above 840 degree celsius. The sediment temperature in sediments of blue carbon ecosystems can not be so high to decompose calcium carbonate. On the other hand, calcium carbonate is generally not dissolved in water. According to Frear & Johnston (1929), the dissolubility of calcium carbonate in water is 9 mmol per kg water at 1 standard atmosphere pressure. With increasing CO2 in the atmosphere and seawater, calcium carbonate in marine waters may react with CO2 to produce calcium bicarbonate. To summary, I think this query is unreasonable. What do you think about it?
The image was sent to me by a diver. It was taken at a depth of 52m in Malta (Central Mediterranean). The 'sphere' was about 1 m in diameter and was moving with the currents. It seemed to be a 'shell' of jelly with no obvious structure. All I can think of is the remains of some gelatinous planktonic organism. Any ideas?

Hello
I have used the 'standard' umbrella plastic anchor/dart (developed I believe by Michael Domier) for over 10 years to PAT-tag great white sharks, with much better retention of tag by shark and less or longer premature releases, than with the original titanum 'flat arrow' anchors/darts.
Now I am about to embark in the tagging of smaller fish, Mobula rays.
My question is if someone out there has been using the smaller version of the Domeier umbrella anchor/dart, the one that is 20 mm in length as opposed to the 31 mm ('standard') umbrella dart (see link below)
I am worried that this smaller version of the anchor might not have good enough retention of tags on fish. I will be using mini-PAT tags on Mobula rays that are between 1 and 2.5 m of disc width.
Any positive or negative experiences anyone can share about using the 20mm umbrella anchors for PAT tagging will be much appreciated.
Thanks in advance.
Hi everyone,
I would like to know if there are online available and free world-wide datasets of sea surface temperature, net primary productivity, salinity, pH and dissolved oxygen.
Best wishes,
Diego
I have 17 rocky shore sites. From these sites I have quadrat data with species percent coverage data.
From each of my sites I also have an environmental measure for a gradient I am interested in. I am only really interested in how the community changes over this one gradient.
The problem I have run into is that every method I have read about for constrained ordination/ direct gradient analysis seems to require more than one environmental variable. I only have the one environmental variable that I am interested in. I did measure 2 other variables but they are direct proxys for the one environmental variable I am interested in.
I really want to find a way to do direct gradient analysis on this community data using only the one environmental variable - surely that is possible??
I have already done a nMDS of my data in R and fitted a vector using envfit of my environmental variable. But because the method is unconstrained i feel it is not that informative?
Any help would be really appreciated by this stressed out masters student :)
It is hypothesized that harpacticoid copepods are the only meiofaunal organisms to develop larval stages because their nauplii share the same habitat as the adults. I am interested to know whether the nauplii (larvae) and copodite stages of harpacticoid copepods are pelagic or benthic compared to calanoid or cyclopoid copepods?
I'm starting my PhD thesis' research on the terminology of marine pollution and I need well-grounded references.
Thank you to those who might help me!
I got this jelly fish in huge quantity while trawling off Kochi.



We lost a manta net codend/collecting bag on a recent trawl and need to replace one ASAP. Not sure where to buy a replacement in Melbourne. ANy ideas?
We collected many fish eggs in a coral reef off the coast of Vietnam. Is that Scarus genus?

After reading several articles I am a bit confused concerning the benthic species taken into account for the calculation of species richness and index like I2EC. In the description of I2EC (Grall & Glemarec, 2003) it is mentioned that fixed epifauna should not be counted. What about the vagile epifauna such as many molluscs of hard substrates (Nassarius, Chitons ...) ? I don’t understand why they are listed in mudflat case. What about Serpulidae species like Spirobranchus ?
Concerning the AMBI, normally used in soft sediment habitats, the list of ecological groups contains species like: Balanus trigonus, Nassarius sp., Actinia sp., Tethya sp., Polycarpa sp.
Looks like every study has its own recipe, and it is not possible to know which benthic species are taken into account by the authors for the calculation of each index.
In my opinion, different indices (AMBI, I2EC) must use different lists (infauna with or without epifauna), and each list should be clearly detailled to ensure reproductibility and comparison.
Can anyone enlighten me on this subject ?
As we all know that more and more marine habitats are degenerating because of anthropogenic activities in the ocean and other reseaons, for example, fishing, climate changes. So we need to do something to change the situation.
Can you guys give me some restoration mehods or suggestions, especially for the coastal area.
regards,
BIN
Hello guys,
Can you send me some papers which published on Science or Nature journal about ecological integrity or ecological connectivity and biodiversity conservation.
regards,
BIN
To understand aquatic ecosystem and its ecological and biochemical characteristics interacting the pollution with the organism, methods for dynamic exchange of DOM and POM is essential. So what are the best methods to understand exchange mechanism of DOM and POM occurring in different aquatic ecosystems?
Recommendations on books would be helpful.
Dear friends,
The question as I said in the title, I'm not sure about what problems we will get in troubles, If we use the stable isotope approach.
I hava already read some papers about the fish stocking migration between the different habitats.
I think the most problem is that the different tissues hava the different rate of metabolism, for example, the liver and blood cell have very fast rate, just few days, and the white muscle, fin, or bone of fish can present a long period of feeding habit, and the stable isotope values can present previous habitat information. Moreover, the size of fish we collect may be also can influence the result of the stable isotope values, but I'm not sure about it.
you guys can give me some suggetions or advices about the question as much as you konw, if so, thank you very much.
Regards,
Xie Bin
Hi,
According to Quieros et al. 2013, Carcinus maenas falls within the bioturbation class of 'Regenerators'.
'Regenerators' are excavators that dig and continuously maintain burrows in the sediment, such as the fiddler crab Uca spp (see Kristensen et al. 2012). However, I doubt C. maenas is a typical regenerator as it does not maintain a burrow system.
My question to you is, how would you classify this species in terms of bioturbation? In my opinion it could be classified as a surficial biodiffusor as it finds most of its food in the top few cm of the sediment (even though it may occasionally dig deeper for food). I have to mention that the study site is a Dutch intertidal sandflat where we mostly find small specimens.
It would be very helpfull if you can let me know on how you think about it!
Thanks Pieter
Queirós, A. M., Birchenough, S. N. R., Bremner, J., Godbold, J. a, Parker, R. E., Romero-Ramirez, A., … Widdicombe, S. (2013). A bioturbation classification of European marine infaunal invertebrates. Ecology and Evolution, 3(11), 3958–85. https://doi.org/10.1002/ece3.769
Kristensen, E., Penha-Lopes, G., Delefosse, M., Valdemarsen, T., Quintana, C. O., & Banta, G. T. (2012). What is bioturbation? the need for a precise definition for fauna in aquatic sciences. Marine Ecology Progress Series, 446, 285–302. https://doi.org/10.3354/meps09506
Before posting this question, I'd like to state that the following must not be regarded by any means to a discussion on catching marine mammals in EU seas.
Why are marine mammals (namely very common species of dolphins and pinnipeds) strictly protected in EU waters while Bluefin tunas, rare and collapsing as they are, are still apparently overfished mainly in the Mediterranean's W basin? Do you think that this has something to do with the "cuteness" of marine mammals and the fact that Thunnus thynnus is "just a fish"?
Many thanks for your contributions.
Hi everybody
I'm trying to culture Nannochloropsis oceanica CCMP1779 (axenic) under heterotrophic conditions. For the methodology I'm following previous studies where they cultured other Nannochloropsis spp. and trying to do it under the same conditions. Briefly I inoculated some phototrophically (f/2) growing culture into a new medium made of f/2 and 2g/L glucose and incubated in the dark. However nothing has been growing for 2-3 weeks, while the dark/light control (in the same medium) grows very fast. Therefore Nannochloropsis is clearly not growing heterotrophically and the problem does not come from the medium.
Does anyone have any suggestion on how to grow Nannochloropsis heterotrophically? are there substrates more suitable than glucose for heterotrophic cultivation? Is it possible that other Nannochloropsis spp. can grow heterotrophically while N. oceanica can't?
I am doing a GIS project on different coastal ecosystems and need a representation of such ecosystems. Corals, Mangroves and Seagrass I have, but kelp is missing...Thank you!
Collection labels shows that this specimen was collected from South China Sea (ca. 14°N, 112°E,>1000 meters depth).
The specimens are very small. One of the specimen looks like having a pair of antenna. Uniramous parapodium with spinigerous compund chaetae. Parapodium well developed with dorsal and ventral cirri.
I don't know which family it belong to.




Dear All,
I have collected this Jellyfishes from Visakhapatnam Fishing harbour. I think one is Crambionella sthulmani, other one is Rhizostoma pulmo Anybody kindly identified and confirm it species level.
Regards
K. Silambarasan
These structures appeared spontaneously attached to the bottom of my culture wells where I maintain mediteranean sea anemones larvae. Cultures are kept in unfiltered seawater 25°C.
On the pictures, the largest cells make about 10µm
(Sorry for the poor quality of the pictures)
Hi guys,
By analysing the microbial metagenomics, I found lots of genetic traits related to metal resistance and organic remediation, suggesting the water pollution in ambient seawater.
I've heard that Kaneohe Bay used to be a good snorkelling place in early 90s but then it was polluted.
I am not familiar with the marine chemistry/pollution field, if anyone has the data or knows where I should look at, please let me know. Thanks in advance.
Kind. Fang
Please explain sandy shore adaptations in marine invertebrates, add specific comments on their physiology.
These corals were observed in the central Red Sea. In some of these photos Acropora if it is possible I need species name. For other even genus name is enough.


+5
I am working on low latitude Paleogene shallow marine fauna of W India and would like to understand the trophic scenario of this fossil community. Where can I find relevant information on extant shallow marine fauna for comparison?
Thank you.
Hi All,
I'm interested in opinions of experts on the age of this sample Alaska plaice (Pleuronectes quadrituberculatus) from south-western part of the Bering sea. My preliminary estimate is 13 years.
Thank you in advance.

I am conducting a survey which i will use as primary research for my extended project.
If you can you may, State which of the following is the most destructive fishing practice. You may also give a reason why you choose that.
The picture of this brittlestar is from the North West Atlantic at about 900 m. depth. The location is near the Greenlandic coast.
Can this Brittlestar be confirmed as an Ophiomusium lymani ? or could I be looking at something completely different

I need to calculate LOD in Hg analysis of fish sample. My method is;
Blank: put 10 mL nitric in microwave vessels and run the program and volume up to 50 mL and read (result received in microgram/L)
Sample: take 1 g sample+10 mL nitric acid in microwave vessels, then run the program,
My equation is for LOD=mean+ 3*standard deviation
But I receive blank reading in microgram/L unit (See attached excel sheet), then how I calculate LOD? Can you give the example or correct my excel sheet
I will be increasing T by 2C every few days and need a heater that can do this accurately for a few gallons of seawater
Dear all,
I am looking for studies coupling experimental and demographic models simulating global change scenarios. For example, studies measuring the effect of temperature on the survival of individuals in controlled aquariums, and then incorporate that data in demographic models (such as matrix population models). I would prefer studies on the marine environment; however, given their scarcity I am also opened to terrestrial ones.
Thank you all.
i exposed mussels to different chemicals, same concentrations, different time of exposure, and i got the results for different organs, also i used DMSO as carrier for one chemical, could you please tell me which one is most suitable for mein, ANOVA one way or two way, beside of this i was confused about the effect of carrier how to normalize it (substraction or ratio relative to control) or just see if the difference relative to control is significant or not? thanks in advance
Dear researchers,
I’m evaluating marine species distributions off Northern Humboldt Current System (Peru). So, I wish calculate some overlapping index between them (e.g. Niche Overlap, Gotelli et al. 2015). To this, I need entries (values) in order to construct the matrixes. I have logistic outputs from MaxEnt (rasters and suitability values). How can I use these values? Need I some transformations? Thanks in advance for your helpful. Miguel.
Since early 2015, on Bonaire (Dutch Caribbean), I sometimes encounter 'humps' on scleractinian corals.
They feel like cartilage or a hard gel and have a diameter of about 10-20 mm. The surface has a whitish-violet colour, possibly due to fine filaments. In cross sections some concentric layers may be recognized.
These humps were encountered on healthy corals (Orbicella faveolata, Agaricia agaricites), on morbid corals (Orbicella annularis, Siderastrea siderea), on dead coral next to live coral (Madracis auretenra) and on dead coral surfaces (unspecified), see enclosed photos.
Who has seen these humps as well and who knows what they are?




