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Mammal Taxonomy - Science topic

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Last year I found a text in German in which Salomon Müller describes how he climbs Mount Singgalang in Sumatra, sees a pygmy squirrel on a mossy tree, and shoots it. I shared the text with a friend, who, like me was very excited about the finding. Since then she has lost the email in which I sent her the text, as have I, and I have absolutely no idea where I found the German text. I have searched as much as I could but not a trace of this text. Plenty of Dutch writings by Müller but not the detailed description in German of his ascent of Mt Singgalang. Am I losing my marbles or does that text indeed exist?
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Slender squirrel is to be expected there. The interesting thing about Pygmy Squirrel (Excilisciurus) was that Mueller's accounts of seeing the species in Sumatra has been dismissed as erroneous by subsequent experts. That's why the hunting account is of interest (and also because we did find the species on Sumatra, so Mueller was right).
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I work with bat's helminths taxonomy. The ideal is to work on fresh hosts, but some bats species are highly threatened and it's not possible to obtain fresh carcasses or other alternatives. For these cases, I'm thinking about recovering the parasites from bats in biological collections. However the helminths recovering is difficult because of the dehydration and stiffening of the viscera when stored in formaldehyde or alcohol solutions. I've been trying to store some samples in water for some hours or days, but the visceras didn't rehydrate at all. Does anyone have some tips?
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The process of fixation is irreversible - I agree to that.
But I am wondering, why you would like to rehydrate the viscera. Wouldn't it be easier to simply 'wash out' the helminths (I suspect that they are in the lumen of the intestines?), then make a cell block of the fluid and then look an it via microscope?
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There are two extant species of Hydrochoerus: Hydrochoerus isthmius, the lesser or Panamanian capybara, and the genotype species H. hydrochaeris. The latter is the more common species of capybara, found throughout most of South America, whereas the other is restricted to the northwestern side of the Andes ranging into Panama. However, H. hydrochaeris doesn't seem to have a useful common name to distinguish it from H. isthmius. It's referred to as the "capybara", but both species are capybaras, and it's never referred to as the "common capybara", "greater capybara", or "southern capybara". H. hydrochaeris is also much larger than H. isthmius (nearly twice the size of the latter species).
I am making a figure I intend to use to show to an educated layman audience, and am using capybara bones as an extant scale. I am trying to use the common name to not confuse my audience, but at the same time I want to make it clear I am referring to H. hydrochaeris and not H. isthmius so there is no confusion for people who are more familiar with scientific names. Given this, what would be the correct common name to refer to H. hydrochaeris such that I do not confuse my audience?
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The capybara, capybara, chigüiro or chigüire, which is a species of rodent of the Caviidae family typical of South America, being the largest rodent in the world
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How would this appear on a tree if COI only resolved those closely related species and not more distantly related species? Thank you
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support values would be low for deep branches and/or they would be unresolved (as Artur already mentioned). And COI is NOT suited to resolve deep branches. For closely related species it is fine, but also for closely related species you always have the problem that if you analyze a single gene, you will only receive a gene tree. Not the underlying species tree and that might be quite different
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I need a confirmation: Cervus elaphus fossilis Goldfuss, 1821 and Cervus canadensis fossilis Znansky, 1925 are homonyms, isn't it? Or I am wrong?
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I thank everybody who shared their opinion on this question. I have reported C. elaphus fossilis and C. canadensis fossilis as homonyms in my recent paper:
The important argument for this conclusion is that subspecies names theoretically may be elevated to species rank, and thus those names become obvious primary homonyms as Prof. Hołyński suggested here.
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Hi Hellen,
I was looking for your open source Anuran male advertisement call database but I cannot find it anymore.
Do you have a link for me?
regards,
André
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Dear Andrè,
You should take a look at Fonoteca Zoológica of the National Museum of Natural Sciences, Madrid, ─ http://www.fonozoo.com/; Maculay Library of the Cornell Lab of Ornithology, New York ─ https://www.macaulaylibrary.org; and the Fonoteca Neotropical Jacques Vielliard of the Campinas State University, São Paulo ─ www.2.ib.unicamp.br/fnjv/).
The are the three references for anuran calls.
Good luck,
Cristian.
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Which specimen has been designated the holotype (or more likely, the lectotype) of Cuon alpinus (Pallas, 1811), and where is it stored?
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I guess it depends on the subspecies...
I found information on the type series of Cuon alpinus hesperius on that website:
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  1. I've found a humerus in a river bed. I'm not sure, but I think it's from a rhino. Could this bone be assigned as a genus ?
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In all rivers around the world you can always find single bones. The bone seems undoubtedly old but an accurate dating will be difficult and costly.
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This photo was taken a 200x.
Sample of faecal material was taken from an Icelandic Arctic fox, kept as frozen, before undergoing sedimentation using Apacor's mini parasep kits.
Stained only with iodine.
Any clues to its possible identification would be greatly appreciated,
Thanks and best wishes,
Charlotte Evans/
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Dear Charlotte, I am fully agree with Chris Samek, It is a digenean, Oral sucker is clear.But for the correct identification anterior part is completely twisted (upside down). Ventral sucker can be seen in the overlapped portion(But  not clear). Vitelline glands very clear, embryonated eggs are also visible. Testis at the posterior end , not  tandem( oblique)
With regards
Subair
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Hello. I am deeply puzzled by the breaking-news study by Fennessy et al. (2016) "Multi-locus Analyses Reveal Four Giraffe Species Instead of One" (dx.doi.org/10.1016/j.cub.2016.07.036). The nuclear analysis seems to be solely based on 7 introns sequences, and contradicts a previous study, by Brown et al. (2007) "Extensive population genetic structure in the giraffe" (dx.doi.org/10.1186/1741-7007-5-57), which included over 3 times more individuals for 14 microsatellites loci, with samples from contact zones, and found up to eleven subpopulations clearly differentiated from a nuclear point of view (with possible hybrids)... without suggesting any taxonomic emendation though! As results of both studies are not clearly confronted in the 2016 paper (I barely found a terse "the statistical support is not clear" when mentioning the 2007 results), could any one explain me where are the new insights brought to the Giraffe's case by the latter? And who to follow?
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... And you will find some people loooking and looooooooooooking to all genes of their dataset until they find THAT marker (in the middle of a neutral global result) that will show that HIS/HER SPECIES is statistically "real" (for example, frequencies of an allele coding for color under a strongly selective environment for that color). And the worse part: they get published in more-than-good journals. Now with RADs, for example, you could "find" a species almost everywhere, if you look enough.
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Would anyone help me in giving the correct scientific names for the attached anomalies in two camel fetuses (Figure 1 and 2)?
Thank you in advances
Ali
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Dear Dr. Ali:
Number 1: Fetus dicephalus
Number 2. It should be Arachnomelia. Please see the article by Gentile and Testoni published in Slov Vet Res 2009; 43:17-29 (page 23)(http://www.arcangelogentile.it/Files/Lavori_Scientifici/Slovenian%20veterinary%20Research.pdf).
Best Regards,
Juan
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Any information related to experiences of using keys for identification of European small mammals? I am considering purchasing one of the two:
- Collins "Mammals of Britain and Europe"
- Aulagnier "Mammals of Europe, North Africa and the Middle East"
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Dear Mehmet,
Thank you very much for your recommendation. I will take it into account.
All the best,
Jasmin
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Hello everyone, 
I'm a student in Heritage and I'm curently doing my traineeship in the science faculty of Toulouse where I inventory a lot of taxidermy. 
I encounter difficulties to identify some of the animals and require your help. 
Do you know what this animal is ? It is called 'dasyure viverrin' but I can't find anything on google. Its very damaged so it's even more difficult to identify ! 
It's 47,5cm long x 21cm large x 20cm high
Thanks for your help ! 
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Dasyurus viverrinus refers to the Eastern quoll, but this specimen looks more like a spotted cuscus (Spilocuscus maculatus).  Both species are Australasian marsupials.
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I have recorded meerkats in zoo, and need exact discrimination of call types, becacuse i cant sort them from behavioural context. I will be glad if someone cant help me. I can send wave files of calls. Thanks!
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Dear Erik,
Ask Marta Manser: marta.manser@ieu.uzh.ch
All the best,
Indrikis
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In McKenna and Bell (1997), the pangolins are placed within the Cimolesta as the sister-group to the Carnivora within the Ferae. However, the justification for this placement is not clear to me.  It is intriguing that McKenna anticipated the placement of the Pholidota as sister-group to the Carnivora, which appears in the consensus of molecular phylogenies of Beck et al (2006).
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Hmm . Good question. I am wondering whether the anal scent glands shared with some carnivores could be plesiomorphic.
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I have often heard in the "gray" literature and from several informal statements by researchers that there has been some suggestion that hyaenodontid "creodonts" may eventually be found to be afrotherians, given that some of the oldest known hyaenodontids are from Africa and that this continent seems to have been the center of the group's diversity. However, searching through the literature I have not been able to track down any paper that suggests this. Does anyone know of any paper that has suggested a afrotherian placement for Hyaenodontidae?
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For anyone who's still interested, I think I may have tracked down where this rumor got started. In their 2007 paper on the ptolemaiid Kelba, Cote et al. mention the fact that (at least according to their study) researchers have tended to look outside Africa for the sister taxa of various African groups rather than looking for possible relationships with other African taxa. They mention Afrotheria as the prime example of how the previous idea may not be the case, and also mention that hyaenodontids may have originated in Africa, and they word it in such a way that it might be ambiguously interpreted as hyaenodontids possibly being afrotherians.
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Hello, 
its just a taxonomic question, but i cannot find wether it is accepted on the ICZN or not. 
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Yes, it was officially changed and it is pretty accepted in the literature. See some references below. Other current studies is already citing Sapajus as a valid Genus.
Bests
Alfaro JW, de Souza e Silva J, Jr., Rylands AB. How different are robust and gracile capuchin monkeys? An argument for the use of sapajus and cebus. Am J Primatol. 2012; 74: 273-286.
Lynch Alfaro JW, Boubli JP, Olson LE, Di Fiore A, Wilson B, et al. Explosive Pleistocene range expansion leads to widespread Amazonian sympatry between robust and gracile capuchin monkeys. J Biogeogr. 2012; 39: 272–288.
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What are the concentration of eccrine body glands in diverse mammal groups? According to the littoral dispersal theory (Pleistocene Homo following coasts & rivers), one of the functions of eccrine sweating in littoral human ancestors (feeding on shellfish etc.) might have been the excretion of salt. Sweating all over the body is unlikely in cursorial mammals (e.g. water & salt are scarce in savannas), but overheated furseals on land sweat thermoregulatorily through abundant apocrine &/or eccrine sweat glands on their naked hind-flippers. Most mammals have eccrine glands on palms & soles. AFAIK, apes & catarrhini also have body sweat glands (though less than humans), but I don't know about platyrrhini & other primates.
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Mammals are endothermic and homeothermic vertebrates whose bodies are maintained according to the environmental fluctuations by the systems.  One group of therapsids, the cynodonts, gave rise during the Triassic to therians devoid of this, property. Mammals possess following skin glands: sweat glands (eccrine and apocrine), scent glands.Sweat glands are located over most of the body surface in primates. Apocrine glands, or scent glands, secrete substances that are used for chemical communication, such as in skunks. Mammary glands produce milk that is used to feed newborns. While male monotremes and eutherians possess mammary glands, male marsupials do not. Mammary glands likely are modified sebaceous or eccrine glands, but their evolutionary origin is not entirely clear. Most mammals have eccrine glands on palms & soles. AFAIK, apes & catarrhini also have body sweat glands (though less than humans),  platyrrhini & other primates also possess eccrine glands either clear or degenerated.
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I am interested in the use of microsatellites and how they're used to identify a species. Especially if you have a population of an indeterminate species and would like to compare it with two possible options of nearby populations.
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I agree with Karl. Bayesian statistic is a good choice (Structure, Genland or BAPS), you can perform admixture analyses or population grouping/subdivision. These methods were for ex. sucesfully used in a wide ranging and diverse species of turtles. You need of course a database for populations you want to compare. Standard procedure is to complement microsatellite analyses with mtDNA analysis, I mean a species specific mtDNA region.