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I am trying to analyze the size of agarose beads in a cell counter chip. The image was taken using brightfield so I am having a hard time processing the image well enough to where ImageJ can differentiate between the different droplets. It would be a lot easier if there was a machine learning algorithm or open source code that can help me differentiate between the different droplets and record the size of each droplet. I attached the images with the droplets that need to be processed.
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https://join.skype.com/invite/K64uqT3mCBFS my skype id and i love your article i love meeting people and if you need help contact on skype for life call and voice call okay
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I have exposed the Gaff Chromic film and then scanned it, now in MATLAB, I have to write a code to convert it to dose and then obtain the calibration curve of the film.
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@Yousef Bahrambeigi
Hi Mr Yousef Bahrambeigi
Thank you for your patience and taking the time to respond
Your answers are thorough and
helpful I had another question,
how can I create a dose vector؟
As you mentioned :
Next, you need to plot the OD values against the known doses for each channel and fit a curve to them. You can use the plot function to plot the data and the polyfit function to fit a polynomial curve. For example, if you have a vector of doses named dose and a vector of OD values for the red channel named OD_red
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Which language is used for image processing and difference between digital image and digital image processing?
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Python is one of the widely used programming languages for this purpose. Its amazing libraries and tools help in achieving the task of image processing very efficiently. MATLAB is the best language for doing project on image processing. It has so many existing image processing functions. It is user friendly and you can build project easily. C++ is a multi-paradigm language that enables the programmer to set up efficient im- age processing algorithms easily. This language strength comes from many aspects. C++ is high-level, so this enables developing powerful abstractions and mixing different programming styles to ease the development. A convolutional neural network (CNN) is a type of artificial neural network used primarily for image recognition and processing, due to its ability to recognize patterns in images. Machine learning algorithms used for image processing: Artificial neural networks. Convolutional neural networks (CNNs) Scale-invariant feature transform (SIFT) algorithm. Digital image processing deals with manipulation of digital images through a digital computer. The digital image processing deals with developing a digital system that performs operations on a digital image. A digital image is an image composed of picture elements, also known as pixels, each with finite, discrete quantities of numeric representation for its intensity or gray level that is an output from its two-dimensional functions fed as input by its spatial coordinates denoted with x, y on the x-axis and y-axis. There generally three types of processing that are applied to an image. These are: low-level, intermediate-level and high-level processing which are described. Most of the common image processing functions available in image analysis systems can be categorized into the following four categories: Preprocessing. Image Enhancement. Image Transformation. Image Classification and Analysis.
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How can I normalize a data set of spectrograms using Python coding?
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Normalizing an image dataset for CNN means adjusting the pixel values of images so they fall in a similar range, typically between 0 and 1. This helps the CNN learn faster and perform better. Here's how to do it:
1. Load the image dataset.
2. Convert each pixel value from its current range (usually 0-255) to a range between 0 and 1 by dividing by 255.
3. Use the normalized images as input for the CNN.
This process ensures consistent data scaling, making training more stable and efficient.
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Im trying to create an image classification model that classifies plants from an image dataset made up of 33 classes, the total amount of images is 41,808, the images are unbalanced but that is something me and my thesis team will work on using Kfold; but going back to the main problem.
The VGG16 model itself is from a pre-trained model from keras
My source code should be attached in this question (paste_1292099)
The results of a 15-epoch run is also attached as well
what I have done so far is changing the optimizers from SGD to Adam, but the results are generally the same.
Am I doing something wrong or is there anything I can do to improve on this model to get it to atleast be in a "working" state, regardless if its overfitting or the like as that can be fixed later.
This is also the link to our dataset:
It is specifically a dataset consisting of Medicinal Plants and Herbs in our region with their augmentations. The are not yet resized and normalized in the dataset.
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To enhance the performance of your VGG16 model during training and validation, you can start by applying data augmentation techniques to increase dataset diversity and reduce overfitting. It's crucial to ensure the dataset's cleanliness, correct labeling, and appropriate division into training, validation, and test subsets. Experiment with different learning rates and optimizers, and consider using learning rate schedulers if necessary. Employ regularization methods like dropout and L2 regularization to tackle overfitting issues. Keep a close eye on the training process, implement early stopping, and adjust the batch size as needed. You might also want to explore alternative model architectures or smaller models that could better suit your dataset. Lastly, make sure your hardware resources are utilized effectively, and explore ensemble methods to potentially enhance model performance. These strategies should help you overcome the low accuracy challenge with your VGG16 model.
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Hello everybody,
I analyzed a picture in ImageJ, but I encountered a problem with the threshold. I tried to count cells with analyzed particles. Before starting, I adjusted the picture by changing the contrast and applying a Gaussian filter. Until yesterday, I did it exactly as described, but today the program displayed a message: 'the threshold may not be correct (255-255).'
Can someone help me with this issue? Has anyone with the same problem been able to resolve it?
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When I try to correlate the gps coordinates among points obtained from field and satellite for the same location there is a big difference among the two. I assume that this is partly due to the satellite image shift. Can anyone tell me how to correlate the two datasets that are actually same but have difference in coordinates?
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Publish your paper for free
_________________________
Dear Researchers and postgraduate students
MESOPOTAMIAN JOURNAL OF BIG DATA (MJBD) issued by Mesopotamian Academic Press, welcomes the original research articles, short papers, long papers, review papers for the publication in the next issue the journal doesn’t requires any publication fee or article processing charge and all papers are published for free
Journal info.
1 -Publication fee: free
2- Frequency: 1 issues per year
3- Subject: computer science, Big data, Parallel Processing, Parallel Computing and any related fields
4- ISSN: 2958-6453
5- Published by: Mesopotamian Academic Press.
Managing Editor: Dr. Ahmed Ali
The journal indexed in
1- Croosref
2- DOAJ
3- Google scholar
4- Research gate
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I obtained .txrm, .exm file formats from micro ct scan in xradia context. I want to do the post processing in dragonfly but when I import the files, it asks about pixels and image spacing. Can anyone suggest how can I know these attributes to fill in the window. I am new to dragonfly, I have seen the lessons but the raw files used in them had some attributes. I am lost regarding which file format i should load as well. Any help is appreciated.
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I can't open .txm file with Dragonfile Pro Workstation. I don't know what am i doing wrong. When i go to import image, it doesn't show any .txm file on the folder.
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It should be noted that the silence(meaning that you do not provide objection ) is a sign of approval.
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The main idea is following , since it is costly and time consuming to get labelled image dataset specially medicals imaging , im trying to select similar features like find similarity between the few target dataset eg: CHEST X-RAY image dataset and pretrained model's dataset eg: ResNet50 which is built on ImageNet dataset and compare with the customer dataset to identify similarities on.
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It works, you just have to copy the whole line, including the aspx in the end.
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The image pixel addition could be performed by a sliding window over an unknown image, comparing many places on a single known image to a single known image, to find highest total pixel sums. This would locate the known object at these highest scoring windows.
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you can do it in python easily
by importing object recognition library
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I wish to understand color image processing based on quaternion Fourier transform. Where will I get basics of that? Is there anyone working on this topic in India?
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To perform quaternion color image processing, you can follow these steps:
1. Convert the RGB color image to quaternion representation: Each pixel in the RGB image is represented by a quaternion, which consists of four components (r, g, b, a). The r, g, and b components represent the red, green, and blue channels respectively, while the a component represents the alpha channel for transparency.
2. Apply quaternion operations: Perform various operations on the quaternion representation of the image. These operations can include addition, subtraction, multiplication, division, and other mathematical transformations specific to quaternions.
3. Color space transformations: Perform color space transformations on the quaternion representation of the image. This can involve converting between different color spaces such as RGB, CMYK, HSV (Hue-Saturation-Value), or any other desired color space.
4. Filtering and enhancement: Apply filtering techniques such as blurring or sharpening to enhance or modify specific features in the image. You can use filters designed specifically for quaternion images or adapt existing filters for use with quaternions.
5. Image compression: Develop compression algorithms specifically designed for quaternion images to reduce storage requirements while preserving important visual information.
6. Visualization: Convert the processed quaternion image back to RGB representation for visualization purposes or further analysis if needed.
It's worth noting that performing quaternion color image processing requires a good understanding of quaternions and their mathematical properties. Additionally, there may be specific libraries or software tools available that provide built-in support for quaternion image processing operations that you can utilize in your implementation.
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Why do we need digital image processing and which algorithm is used for image processing and application of digital image processing?
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Digital image processing is essential for a variety of reasons:
  1. Enhancement: It allows us to improve the quality of images by adjusting contrast, brightness, and sharpness.
  2. Restoration: It helps restore old or degraded images by reducing noise, removing artifacts, and enhancing details.
  3. Feature Extraction: Image processing enables the extraction of meaningful information from images, which is crucial for tasks like object recognition, classification, and tracking.
  4. Compression: It's used to reduce the size of image data for efficient storage and transmission without significant loss of quality.
  5. Segmentation: Image processing can divide an image into meaningful regions, which is fundamental for further analysis.
  6. Recognition: It plays a role in recognizing objects, characters, and patterns within images.
  7. Visualization: Image processing techniques can transform complex data into visual representations that are easier to understand and interpret.
  8. Medical Imaging: In medical fields, image processing helps diagnose diseases, analyze images from medical scans, and even guide surgeries.
  9. Remote Sensing: For tasks like satellite imagery analysis, weather prediction, and environmental monitoring.
  10. Security and Surveillance: Image processing is used for face recognition, fingerprint analysis, and video surveillance.
Which algorithms are used for image processing?
There are numerous algorithms used in image processing, catering to various tasks and requirements:
  1. Filters: Gaussian, Median, Sobel, and Canny edge detection for noise reduction and feature enhancement.
  2. Histogram Equalization: Improves contrast by redistributing pixel intensities.
  3. Thresholding: Converts grayscale images into binary images by classifying pixels based on a specified threshold.
  4. Morphological Operations: Erosion, dilation, opening, and closing for shape analysis and noise removal.
  5. Image Segmentation: K-means clustering, Watershed, and region-growing algorithms for dividing images into distinct regions.
  6. Feature Detection: Harris Corner Detection, SIFT (Scale-Invariant Feature Transform), and SURF (Speeded-Up Robust Features) for identifying key points.
  7. Image Compression: JPEG (lossy), PNG (lossless), and Wavelet-based methods for reducing file size.
  8. Object Detection: Haar cascades, YOLO (You Only Look Once), and R-CNN (Region Convolutional Neural Network) for identifying objects within images.
  9. Image Transformation: Fourier Transform and Discrete Cosine Transform for frequency domain analysis.
Applications of digital image processing:
  1. Medical Imaging: Diagnosis, image-guided surgery, and research using techniques like MRI, CT scans, and X-rays.
  2. Remote Sensing: Satellite and aerial imagery analysis for land use, agriculture, urban planning, and disaster management.
  3. Entertainment: Image and video editing, special effects in movies, and video games.
  4. Robotics: Visual perception for robot navigation, object manipulation, and mapping.
  5. Security: Face recognition, fingerprint analysis, and surveillance for security and access control.
  6. Automotive Industry: Autonomous driving, lane detection, and obstacle avoidance.
  7. Artificial Intelligence: Training data for machine learning algorithms, especially in computer vision tasks.
  8. Biometrics: Iris recognition, fingerprint recognition, and voice recognition for identity verification.
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How many steps are there in digital image processing and digital image processing and its types?
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Digital image processing involves several steps in the manipulation of digital images. These steps can vary based on the specific application and goals, but here is a general overview of the typical steps:
  1. Image Acquisition: Capturing images using cameras, scanners, or other imaging devices.
  2. Preprocessing:Image Enhancement: Improving visual quality by adjusting contrast, brightness, and sharpness. Noise Reduction: Removing or reducing noise (unwanted variations) from the image. Image Restoration: Recovering original image quality from degraded versions.
  3. Image Transformation:Spatial Domain: Modifying pixel values directly (e.g., resizing, rotating). Frequency Domain: Converting the image into frequency components using techniques like the Fourier Transform.
  4. Image Segmentation: Dividing the image into meaningful regions or objects for analysis.
  5. Feature Extraction: Identifying and extracting relevant features from segmented regions.
  6. Object Recognition: Identifying and classifying objects within the image based on extracted features.
  7. Image Understanding: Applying contextual knowledge to interpret and understand the image content.
  8. Image Compression: Reducing the size of the image data to save storage space and transmission time.
  9. Image Reconstruction: Restoring a compressed image to a format suitable for viewing or analysis.
  10. Image Post-Processing:Image Filtering: Applying filters to enhance or manipulate specific features. Morphological Operations: Modifying image shapes using dilation, erosion, etc. Image Fusion: Combining multiple images to create a single, more informative image.
  11. Visualization and Interpretation: Presenting processed images in a visually understandable form.
Types of digital image processing include:
  1. Image Enhancement: Improving visual quality through techniques like contrast stretching, histogram equalization, and adaptive enhancement.
  2. Image Restoration: Recovering degraded images by removing noise, blurring, or other artifacts.
  3. Image Compression: Reducing the size of image data while retaining important features.
  4. Image Segmentation: Dividing an image into meaningful regions or objects for further analysis.
  5. Object Recognition: Identifying objects within an image based on their features.
  6. Image Registration: Aligning multiple images taken at different times or viewpoints.
  7. Image Filtering: Applying filters to emphasize or suppress specific image features.
  8. Geometric Image Modification: Changing image size, shape, or orientation.
  9. Morphological Processing: Modifying the structure of objects in an image using dilation, erosion, etc.
  10. Image Analysis: Extracting quantitative information from images for scientific or analytical purposes.
  11. Pattern Recognition: Identifying patterns or objects within images based on predefined models.
  12. Image Understanding: Applying context and domain knowledge to interpret image content.
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I want to calculate band structure for Mn3Ge using quantum espresso. Mn3Ge is a coplanar antiferromagnet in which the three spins of Mn are situated on equilateral triangle with making angle 120 degree with eachother (I am attaching image file). Now I am struck how to write the spin configuration in the input scf file of Mn3Ge. Here i am writing the input which i wrote for spin configuration but this gave me wrong result. Plaese help me to write the spin configuration for this material
starting_magnetization(1) = 0.1
starting_magnetization(2) = 0.1
starting_magnetization(3) = 0.1
starting_magnetization(4) = 0.1
starting_magnetization(5) = 0.1
starting_magnetization(6) = 0.1
angle2(1) = 120
angle2 (2) = 120
angle2 (3) = 120
angle2 (4) = 120
angle2 (5) = 120
angle2 (6) = 120
/
&ELECTRONS
diagonalization = 'davidson'
conv_thr = 1.0d-08
electron_maxstep = 80
mixing_beta = 0.4
/
ATOMIC_SPECIES
Ge 72.64 Ge_sr.upf
Mn 54.938045 Mn_sr.upf
ATOMIC_POSITIONS crystal
Mn 0.1613340000 0.3226680000 0.7500000000
Mn 0.6773320000 0.8386660000 0.7500000000
Mn 0.1613340000 0.8386660000 0.7500000000
Mn 0.8386660000 0.6773320000 0.2500000000
Mn 0.3226680000 0.1613340000 0.2500000000
Mn 0.8386660000 0.1613340000 0.2500000000
Ge 0.6666666700 0.3333333300 0.7500000000
Ge 0.3333333300 0.6666666700 0.2500000000
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have u fond the answer or we shall discuss here.Maybe I shall help here !!!
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area of infarct in percentage of total ventricle area. excluding the background
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Well, it is very good question. My decision was for demonstration only. If I need to do it again on big set of images I would use algorithm rather than decision. f.e. Huang's approach on bright background giving threshold around 234-237.
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I have done Rietveld refinement on PXRD but i do not know where to find the information of Final R indices[I>2sigma(I)] , R indicies (all data) , Extinction coefficient, Largest diff. peak and hole.
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Actually, it depends on the software you have used for the Rietveld refinement. As a JANA2006 user, I would try to export a CIF file and open it with any text editor (e.g., Notepad) afterwards. Such information is usually automatically written into the CIF file. If not, you may try to read the log files for the refinement procedure (for instance, in JANA2006, full details on the refinement procedure are given in the respective *.ref file)
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What deep learning algorithms are used for image processing and which CNN algorithm is used for image classification?
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Dr Tajinder Kumar Saini thank you for your contribution to the discussion
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We did not compare our proposed method with other segmentation techniques because we present our work as a new technique and concept.
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When the level set algorithm is used to segment an image, the level set function must be initialized periodically to ensure that it remains a signed distance function (SDF).
Regards,
Shafagat
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What is the most common compression algorithm and which machine learning algorithm is best for image processing?
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The most common compression algorithm for images is the JPEG (Joint Photographic Experts Group) algorithm. JPEG is a widely used lossy compression method that reduces the file size of images while maintaining a reasonable level of visual quality. It achieves compression by analyzing and quantizing the color and spatial information in the image.
As for machine learning algorithms in image processing, there isn't a single "best" algorithm, as the choice depends on the specific task and data at hand. However, certain algorithms are commonly used in various image processing applications:
  1. Convolutional Neural Networks (CNNs): CNNs are the go-to choice for a wide range of image processing tasks, including image classification, object detection, segmentation, and more. They are designed to automatically learn hierarchical features from images, making them highly effective for handling complex visual data.
  2. Generative Adversarial Networks (GANs): GANs are used for tasks like image generation, style transfer, and data augmentation. They consist of a generator and a discriminator that work together to generate high-quality synthetic images.
  3. Recurrent Neural Networks (RNNs): While mainly used for sequential data, RNNs can also be used in image processing tasks where temporal information is important, such as video analysis or captioning images.
  4. Support Vector Machines (SVMs): SVMs can be used for image classification and segmentation. They work well when there's a clear boundary between classes.
  5. Random Forests and Decision Trees: These are used for tasks like image segmentation and feature extraction. They can work well when dealing with structured or tabular image data.
  6. K-Nearest Neighbors (KNN): KNN can be used for tasks like image recognition and classification, especially in scenarios with relatively small datasets.
  7. Deep Learning Architectures for Specific Tasks: Some tasks have specialized architectures, such as U-Net for biomedical image segmentation, Mask R-CNN for instance segmentation, and YOLO (You Only Look Once) for real-time object detection.
The "best" algorithm depends on factors like the nature of the image processing task, the amount of available data, computational resources, and the desired level of accuracy. In many modern applications, deep learning approaches like CNNs often outperform traditional machine learning algorithms due to their ability to capture intricate patterns and features in images.
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image processing and machine learning
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Please check the file
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Dear all,
do you know what is the correct subsample size (number of pixel) to carry out a confusion matrix? I am digitizing the true classes on an image to check the accuracy of the classifier. However, digitizing the whole image is too much time-consuming and, so far, I have chosen a subsamble representative of the whole area/image. How much should it be large respect to the original image?
Thank you very much
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Thank you very much for your precisation. I then also found this paper demonstrating that it is sufficient a very smaller area: Blatchford, M. L., Mannaerts, C. M., & Zeng, Y. (2021). Determining representative sample size for validation of continuous, large continental remote sensing data. International Journal of Applied Earth Observation and Geoinformation, 94, 102235.
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Hi, I’m a beginner in satellite image analysis. I want to know the lat/lon coordinates of some bursts of a sentinel-1 image. I looked at the file names of the downloaded zip, but couldn’t find any promising files(attached: file structure). Can someone teach me how I can obtain them?
Context: My purpose is to generate a coherence image and project to QGIS. I used SNAP following up to p12 of this tutorial(https://step.esa.int/docs/tutorials/S1TBX%20TOPSAR%20Interferometry%20with%20Sentinel-1%20Tutorial_v2.pdf). but the coordinates were somehow lost from the first step(importing and choosing bursts so as to produce a split file). not sure why but it apparently happens with other satellites(https://earthenable.wordpress.com/2016/11/21/how-to-export-sar-images-with-geocoding-in-esa-snap/). I was able to produce the coherence without coordinates, so i’m thinking if I can get the coordinates from the sentinel file, I can just add it to the geotiff myself.
I also want to ask, is this idea wrong? are the sentinel coordinates different from the coherence image as it undergoes back geocoding?
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Maybe you should study the SENTINEL-1 PRODUCT DATA TYPES.
Candidate Reference:
Regards,
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I picked up a single colony of Salmonella Typhimurium with a gene specific primer but several times i have tried...but not getting any results.
So please suggest how can I troubleshoot this.
Thanku
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Provided your PCR conditions and Primers are perfect, the only reason I can think of for this kind of result is DNA overdose that might have changed the pH of your mastermix despite buffering. To avoid this, pick a single colony and mix into 50 ul nuclease-free water. Boil the sample at 95 C for 10 min. Vortex thoroughly and pellet down all the debris. Take 2 ul of supernatant as DNA in your PCR. This will reduce initial dna input and will yield a better pcr product.
All the best
Siva
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Is digital image processing machine learning and which algorithm is used for image processing in machine learning?
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Digital image processing is not machine learning, but it is a field of computer science that uses algorithms to manipulate and enhance digital images. Machine learning is a type of artificial intelligence that allows computers to learn without being explicitly programmed.
There are many different algorithms that can be used for image processing in machine learning. Some of the most common algorithms include:
  • Convolutional neural networks (CNNs) are a type of deep learning algorithm that are particularly well-suited for image processing tasks such as object detection and classification. CNNs work by learning to identify patterns in images, such as edges, shapes, and textures.
  • Support vector machines (SVMs) are a type of machine learning algorithm that can be used for classification and regression tasks. SVMs work by finding the best hyperplane that separates the data points into different classes.
  • Random forests are a type of ensemble learning algorithm that combines the predictions of multiple decision trees. Random forests are often used for classification and regression tasks, but they can also be used for image processing tasks such as object detection and segmentation.
  • Gaussian mixture models (GMMs) are a type of probabilistic machine learning algorithm that can be used for clustering and classification tasks. GMMs work by modeling the data as a mixture of Gaussian distributions.
The best algorithm for a particular image processing task will depend on the specific requirements of the task. For example, if the task is to detect objects in an image, then a CNN would be a good choice. If the task is to segment an image, then a random forest might be a better choice.
Here are some examples of how machine learning is used in image processing:
  • Face recognition: Machine learning algorithms are used to recognize faces in images. This is used in security systems, social media, and other applications.
  • Object detection: Machine learning algorithms are used to detect objects in images. This is used in self-driving cars, robotics, and other applications.
  • Image classification: Machine learning algorithms are used to classify images into different categories. This is used in medical imaging, industrial inspection, and other applications.
  • Image segmentation: Machine learning algorithms are used to segment images into different regions. This is used in medical imaging, remote sensing, and other applications.
  • Image restoration: Machine learning algorithms are used to restore damaged or corrupted images. This is used in photography, video editing, and other applications.
Machine learning is a powerful tool that can be used to automate many image processing tasks. As machine learning algorithms continue to improve, they will become even more useful for image processing applications.
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Why CNN is better than SVM for image classification and which is better for image classification machine learning or deep learning?
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Convolutional Neural Networks (CNNs) are typically better than Support Vector Machines (SVMs) for image classification because they are able to learn more complex features from images. CNNs are specifically designed to extract features from images, while SVMs are more general-purpose classifiers.
Here are some of the reasons why CNNs are better than SVMs for image classification:
  • CNNs are able to learn local features from images. This is because they use convolution operations, which allow them to learn features at different scales. SVMs, on the other hand, learn global features from images.
  • CNNs are able to learn hierarchical features from images. This is because they have multiple layers, each of which learns more complex features from the output of the previous layer. SVMs, on the other hand, only have one layer.
  • CNNs are less sensitive to noise than SVMs. This is because they learn features from local patches of an image, which are less likely to be affected by noise. SVMs, on the other hand, learn features from the entire image, which can be more affected by noise.
In general, CNNs are better for image classification than SVMs. However, there are some cases where SVMs may be a better choice. For example, if the image dataset is small or if the images are very noisy, then SVMs may be able to achieve better accuracy than CNNs.
As for machine learning vs. deep learning for image classification, deep learning is generally better than machine learning. This is because deep learning models are able to learn more complex features from images than machine learning models. However, deep learning models are also more complex and require more data to train.
In general, if you have a large image dataset and you need to achieve high accuracy, then you should use a deep learning model for image classification. If you have a small image dataset or you don't need to achieve very high accuracy, then you can use a machine learning model. Here are some specific examples of where CNNs have been used for image classification:
  • Face recognition: CNNs have been used to develop very accurate face recognition systems.
  • Object detection: CNNs have been used to develop systems that can automatically detect objects in images.
  • Medical image analysis: CNNs have been used to develop systems that can diagnose diseases from medical images.
  • Natural language processing: CNNs have been used to develop systems that can understand the meaning of text.
These are just a few examples of the many applications of CNNs. CNNs are a powerful tool that can be used to solve a wide variety of problems.
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Is digital image processing part of AI and digital image processing used in computer vision?
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Yes, digital image processing is a part of AI and is used in computer vision.
Digital image processing is the manipulation of digital images using computer algorithms. It is used to improve the quality of images, extract information from images, and create new images. Some common image processing tasks include:
  • Noise reduction
  • Sharpening
  • Edge detection
  • Segmentation
  • Classification
Computer vision is the field of computer science that deals with the extraction of information from digital images and videos. It is used in a variety of applications, such as:
  • Self-driving cars
  • Medical imaging
  • Face recognition
  • Video surveillance
Digital image processing is used in computer vision to perform tasks such as:
  • Preprocessing images to remove noise and improve their quality
  • Extracting features from images that can be used to identify objects or scenes
  • Training machine learning models to recognize objects or scenes in images
So, to answer your question, digital image processing is both a part of AI and is used in computer vision. Here are some specific examples of how digital image processing is used in computer vision:
  • In self-driving cars, digital image processing is used to identify objects on the road, such as other cars, pedestrians, and traffic signs.
  • In medical imaging, digital image processing is used to enhance the contrast of images, remove noise, and identify tumors or other abnormalities.
  • In face recognition, digital image processing is used to extract features from faces, such as the distance between the eyes and the shape of the nose, that can be used to identify individuals.
  • In video surveillance, digital image processing is used to detect and track objects in videos, such as people or vehicles.
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I am following the vignette's protocol for the design II in AdehabitatHS using my data. But when I try to rasterize the polygons (14):
>pcc<-mcp(locs[,"Name"],unout="km2")
>pcc#it is a Spatial Polygons Data Frame showing the 14 polyogns
>image(maps)
>plot(pcc, col=rainbow(14),add=TRUE)
>hr<-do.call("data.frame",lapply(1:nrow(pcc),function(i){over(maps,geometry(pcc[i,]))}))
>hr[is.na(hr)]<-0
>names(hr)<-slot(pcc,"data")[,1]
>coordinates(hr)<-coordinates(maps)
>gridded(hr)<-TRUE
I got the following Error:
suggested tolerance minimum: 4.36539e-08
Error in points2grid(points, tolerance, round) :
dimension 2 : coordinate intervals are not constant
I would appreciate any suggestion on how to solve this problem.
I cannot figure out if this is a problem with my rasters (4 images) or with the Polygons, although I strongly believe this last ones are the issue.
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I would like to use the program adehabitat HS but failed after downloading the program. Is there any example either in video or ppt of the codes?
Thank you for the time and help.
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Is there any one applied Fiji image J software for analysis of CAM or RAAR assay for angiogenesis? i need some information
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Even though I don't have the slightest idea of what CAM or RAAR means,
Is this of any help?
The paper is here:
Maybe you can also ask for help at the Image analysis forum...
I hope this helps,
Cheers,
J
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Can any of the researchers in the field of image processing help me, and give me some a novel ideas to begin with research?.
I would be so grateful ^_^
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Unfortunately it is not of my interest
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We want to plot polar diagram for young modulus and Poisson's ration for 2D monolayer material. If have any script or software please suggest me. Image are attached here.
Thank You,
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script that demonstrates how to create a polar plot:
```python
import numpy as np
import matplotlib.pyplot as plt
# Sample data for Young's modulus and Poisson's ratio
theta = np.linspace(0, 2*np.pi, 100) # Angular values
young_modulus = np.random.rand(100) # Young's modulus values (replace with your own data)
poissons_ratio = np.random.rand(100) # Poisson's ratio values (replace with your own data)
# Create the polar plot
fig = plt.figure()
ax = fig.add_subplot(111, polar=True)
# Plot Young's modulus
ax.plot(theta, young_modulus, label="Young's Modulus")
ax.fill(theta, young_modulus, alpha=0.25)
# Plot Poisson's ratio
ax.plot(theta, poissons_ratio, label="Poisson's Ratio")
ax.fill(theta, poissons_ratio, alpha=0.25)
# Set the labels and title
ax.set_xticklabels([])
ax.set_yticklabels([])
ax.set_title("Polar Diagram for Young's Modulus and Poisson's Ratio")
# Add a legend
ax.legend()
# Show the plot
```
matplotlib library should been installed (`pip install matplotlib`) before running this script. You can replace the sample data (`young_modulus` and `poissons_ratio`) with your own data accordingly.
This script generates a polar plot with Young's modulus and Poisson's ratio represented as two separate curves. Each data point is plotted at a specific angle (`theta`) around the polar axis. The `fill` function is used to fill the area enclosed by the curves.
Good luck
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Dear researchers, according to the attached image, is there a way to find the standard deviation based on the sample size and mean?
Kind regards
Adel
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I am afraid that without knowing either the individual observations or the sum-of-squares (sum of the squared discrepancies around the mean), there is no way of identifying the sample standard deviation. Let me tell you an example. Consider the two datasets (1, 3, 5, 7 and 9) and (3, 4, 5, 6 and 7). Both of them form a sample of n=5 units and possess the same sample mean of 5. Their standard deviation, however, is not the sample. Unfortunately, the sample mean and the sample size are not sufficient to identify the corresponding standard deviation.
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I am doing my graduate research on Through-the-wall radar imaging (TWRI) to detect and image human and animal (cat) targets. I need the dataset to test my simulation. Can someone help me with this?
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You can search on Kaggle for data
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Hi! I am planning to use image J angiogenesis analyzer as my image analyzer for my research study. Our method used is CAM assay. I am still confused on how to use the software. Also, what size of the image and what magnification for the stereo microscope should be used? Thank you!
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Thank you
Best regards
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I have three experimental groups and corneal imaging performed on Day 1,3,5,7,9,11 and 14.
So which Image Analysis software is recommended to measure the diameter of ocular infected area?
Thank you!
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For analyzing the diameter of ocular infected areas in your experimental groups' corneal images, you might consider using image analysis software such as ImageJ or FIJI. These tools are widely used and offer a variety of features for measurements and analysis of images, including area and diameter measurements.
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I am actually working on image processing topic which is going on by using artificial intelligence
I need to know how can I relate two events which are in different time sequences on a single map sing AI ??
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determining causality direction between two events is a challenging task that requires careful consideration, domain knowledge, and appropriate statistical and machine learning techniques. While artificial intelligence and machine learning can assist in causal inference, they are not a substitute for sound experimental design and understanding of the underlying context. A combination of correlation analysis, causal inference techniques, experimental design, and expert validation is often necessary to establish meaningful causality. Additionally, creating a causal map or directed graph can visually represent the causal relationships between the events. However, it is crucial to exercise caution when making causal claims and be aware of the limitations and assumptions of the methods used. Causality is a powerful concept that requires rigorous analysis and continuous refinement.
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I took MRI phantom images at various concentrations of iron (100, 50, 25, and 12.5 ug/mL) for my iron oxide based contrast agent system. The images came out as expected, with more darkening resulting at higher concentrations. I have been introduced to the image analysis software, Horos, where I can analyze these images for I guess pixel intensity but I am wondering how to use that to calculate a relaxivity value?
Or do you suggest other software or programs for calculating relaxivity from a DICOM file? Thank you!
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Relaxivity is a fundamental parameter used in magnetic resonance imaging (MRI) to describe the relationship between the relaxation rate of nuclear spins and the concentration of a contrast agent. It is typically expressed in units of mM^(-1)s^(-1) or similar. To calculate relaxivity from image intensity of an MRI phantom image, you will need to perform a series of steps as follows:
  1. Acquire Phantom Images: Obtain MRI images of a phantom containing varying concentrations of the contrast agent. The phantom should have compartments with known concentrations of the contrast agent to create a calibration curve.
  2. ROI Selection: Select regions of interest (ROIs) within the images corresponding to each compartment of the phantom. Ensure that each ROI is entirely within a single compartment and does not include any noise or artifacts.
  3. Intensity Measurement: Extract the mean or median image intensity within each ROI. You can use software tools like ImageJ or Python libraries like scikit-image or SimpleITK to perform the intensity measurements.
  4. Concentration Determination: From the known concentrations of the contrast agent in each compartment, create a calibration curve relating image intensity to concentration. This can be done using a linear or nonlinear regression, depending on the contrast agent and the relationship between concentration and intensity.
  5. Relaxivity Calculation: Once you have the calibration curve, you can calculate the relaxivity. The relaxivity (r1 or r2) is related to the slope of the calibration curve:For T1-weighted images, the relaxivity (r1) is calculated as the slope of the calibration curve for the T1 relaxation time. For T2-weighted images, the relaxivity (r2) is calculated as the slope of the calibration curve for the T2 relaxation time. The relaxivity can be obtained by dividing the slope of the calibration curve by the gyromagnetic ratio of the nucleus (proton for most clinical MRI) and the field strength of the MRI scanner.
Keep in mind that the calibration process and relaxivity calculation may vary based on the specific MRI scanner, contrast agent, and imaging sequence used. Additionally, the accuracy of the relaxivity calculation depends on the quality of the phantom images, the proper selection of ROIs, and the accuracy of the known concentrations in the phantom compartments.
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I have a signal having dimensions 500 rows and 10000 columns. I want to convert it to a unique image and extract features using GLCM in MATLAB. Any help regarding this?
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See Attachment
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Who was involved in signal detection in a moving video stream? Interested in methods of automatic recording when a given object appears in the image stream.
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Signal detection in a moving video stream, particularly for the purpose of automatically recording when a given object appears, involves various researchers, institutions, and industries in the fields of computer vision, machine learning, and artificial intelligence. Over the years, numerous methods and approaches have been developed to achieve object detection and recognition in video streams. Some of the key contributors and techniques include:
  1. Computer Vision Researchers: Researchers in the computer vision community have been at the forefront of developing innovative algorithms and models for object detection in video streams. They have made significant contributions to the theoretical foundations of object detection and have developed many pioneering techniques.
  2. Deep Learning Researchers: With the rise of deep learning, particularly convolutional neural networks (CNNs), the accuracy and efficiency of object detection in videos have improved drastically. Researchers in this field have introduced numerous architectures like YOLO (You Only Look Once) and SSD (Single Shot Multibox Detector) that are widely used for real-time object detection in video streams.
  3. Universities and Research Institutions: Academic institutions around the world conduct research on object detection in videos. Professors, students, and researchers in these institutions publish papers, develop algorithms, and collaborate with industries to advance the state-of-the-art in this domain.
  4. Industry Players: Companies in the tech industry, especially those focused on computer vision, autonomous vehicles, surveillance, and security, have invested heavily in research and development for object detection in video streams. They often apply cutting-edge methods to real-world scenarios, leading to practical applications.
  5. Open-Source Communities: Several open-source communities, such as TensorFlow, PyTorch, and OpenCV, provide libraries and tools for object detection in video streams. These communities have made it easier for developers to implement and experiment with various object detection techniques.
  6. Government and Defense Agencies: Signal detection in video streams has important applications in defense, security, and intelligence. Government agencies invest in research to develop advanced object detection capabilities for surveillance and threat detection purposes.
  7. Startups and Innovation Hubs: Startups and innovation hubs have also played a significant role in developing novel solutions for object detection in video streams. Their agility and fresh perspectives have contributed to advancements in this area.
The methods employed for automatic recording when a given object appears in a video stream are diverse and continually evolving. Some of the popular techniques include:
a. Single Shot Detectors (SSD): These methods perform object detection with a single forward pass of the neural network, enabling real-time processing in video streams.
b. You Only Look Once (YOLO): YOLO is another real-time object detection algorithm that can detect multiple objects in an image or video frame simultaneously.
c. Region-based Convolutional Neural Networks (R-CNN): R-CNN and its variants use region proposal methods to identify potential object locations before performing object detection.
d. Faster R-CNN: Faster R-CNN introduced the concept of Region Proposal Networks (RPNs) to speed up the object detection process.
e. Mask R-CNN: This extension of Faster R-CNN includes an additional mask prediction branch, allowing for pixel-level segmentation.
f. Feature Pyramid Networks (FPN): FPN enhances the performance of object detection in multi-scale scenarios by using feature pyramids.
g. EfficientDet: This model aims to achieve high accuracy and efficiency by balancing network depth, width, and resolution using compound scaling.
It's important to note that the field of object detection in video streams is continually evolving, and new methods are being researched and developed. Collaboration among academia, industry, and open-source communities plays a crucial role in advancing the capabilities of automatic object detection in video streams.
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How do i calculate Land Surface Temperature Landsat 8 level 2 image?
Do I have to convert DN (TOA) to radiance, then convert radiance to brightness temperature, then emissivity, and finally the LST calculation?
OR is it enough to rescale the thermal bands and convert kelvin to celsius degrees (since level 2 is already corrected)?
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This was my question too. But I understood this;
To obtain "LST" from Collection 2 Level 2 Landsat images, the following formula is sufficient: (DN * 0.00341802 + 149) - 273.15.
However, if you want to calculate LST using NDVI, Pv, and emissivity, you will need to download the Level 1 collection of Landsat.
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I have calculated the euclidean distance between two coordinates given in the image using the following formula:
dist(p,q)=\sqrt{(p_{x}-q_{x})^{2}&plus;(p_{y}-q_{y})^{2}&plus;(p_{z}-q_{z})^{2}}
What shall be the unit of the distance in this case? for example, the distance between two point is 6.23.
Shall I consider nm or angstorm?
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For the specific case of the requested value no one can say. We do not know about the unit of your coordinate system.
Regarding the general question: It depends on your target audience. While Angström is no valid SI unit it is often replaced by/converted to nanometre (nm).
The DIN norm 1301.3 lists the Angström as a no longer valid unit and explicitely notes that the use should be avoided. The same is found for several other national specifications on weighing and measurements.
Nevertheless, the Angström is still common in chemstry, as it is handy on the level of molecular/atomic distances....
I would prefer the nm unit; maybe you can give the converted Angström value in brackets behind the SI representation...
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Kindly give suggestions regarding calculation of dendritic spine density .I have a doubt that whether i have to calculate the spine numbers directly under microscope or from acquired images . To find the percentage of immature and mature spines,do we have any formulas to be used like preference index?. how many neurons i should use to calculate the spine numbers. I could not find exact way.
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Thank you for your response. No, i do not have that software. i am using only imagej. will that suffice?. one more question should i use whole neuron to count the apical dendrites or only the portion of dendrite would be fine?.
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LST = BT / 1 + w (BT / p) * Ln (ε) (formula 1)
What is the name of this method?
Additionally, we use the following formula for Landsat 8:
LST = (BT / (1 + (0.00115 * BT / 1.4388) * Ln(ε))) (formula 2)
What are the differences between Formula 1 and Formula 2? If we use separately Formula 1 and Formula 2 to calculate the LST of one Landsat 8 image, will the results be the same?
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The equations provided are variations of the radiative transfer equation used for estimating Land Surface Temperature (LST) from satellite imagery, such as that from the Landsat series of satellites. The equation is also known as the Radiative Transfer Equation for Temperature (RTE for T), and it's frequently used in remote sensing applications.
The formula includes variables as follows:
LST represents the land surface temperature,
BT is the at-sensor brightness temperature,
w represents the wavelength of emitted radiance,
p is the constant Planck's constant, and
ε is the emissivity of the surface.
Formula 1 is a general form of the radiative transfer equation for temperature, while Formula 2 is a specialized form specifically tailored for Landsat 8 data.
Comparing Formula 1 and Formula 2, you can see that the terms w(BT/p) and 0.00115BT/1.4388 are similar in their purpose. They are both corrections for the wavelength of emitted radiance, but the actual values used (and their unit) will differ because the second formula is specifically calculated for Landsat 8's thermal bands. The 1.4388 value in Formula 2 represents the Wien's displacement constant in micrometers Kelvin units.
The other difference is that Formula 1 uses a natural logarithm of ε (emissivity), while Formula 2 doesn't include this term. This suggests that Formula 2 assumes a constant emissivity (ε) for Landsat 8, which might not necessarily be the case for all land cover types.
So, if you use Formula 1 and Formula 2 separately to calculate the LST of one Landsat 8 image, the results are likely not to be exactly the same due to the differences in the assumptions made in each formula. The difference in results would be based on how much the assumptions made for each formula match the reality of the particular Landsat image being processed.
In conclusion, the choice of formula should be guided by the specific details of your Landsat image, and your knowledge about the land cover types present, their emissivity, and the specific spectral characteristics of the Landsat platform being used.
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Image mosaic using python, stitch using feature matching techniques
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Jens Kleb thank you for your recommendation . I will check it
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Please assist by sharing articles that examined self image as variable, looking for existing instruments for my study.
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Below is a sample questionnaire to assess the self-image variable. The questions are designed to understand how individuals perceive themselves and their self-image. Participants can respond using a Likert scale (e.g., 1 to 5) to indicate the extent to which they agree or disagree with each statement.
  1. How do you feel about your overall appearance?Very Dissatisfied Dissatisfied Neutral Satisfied Very Satisfied
  2. I believe I have positive qualities and attributes.Strongly Disagree Disagree Neutral Agree Strongly Agree
  3. How confident are you in your abilities and skills?Not Confident at All Slightly Confident Moderately Confident Confident Extremely Confident
  4. I often compare myself to others to assess my self-worth.Never Rarely Sometimes Often Always
  5. How do you perceive your intelligence and academic abilities?Very Low Low Average High Very High
  6. I feel comfortable expressing my opinions and ideas in a group setting.Strongly Disagree Disagree Neutral Agree Strongly Agree
  7. How much do you value and appreciate yourself as an individual?Not Valued at All Slightly Valued Moderately Valued Valued Highly Valued
  8. I often feel insecure about my body image.Strongly Disagree Disagree Neutral Agree Strongly Agree
  9. How satisfied are you with your achievements and accomplishments in life?Very Dissatisfied Dissatisfied Neutral Satisfied Very Satisfied
  10. I am proud of who I am and what I have achieved.Strongly Disagree Disagree Neutral Agree Strongly Agree
  11. How often do you experience feelings of self-doubt?Never Rarely Sometimes Often Always
  12. I am comfortable with the way I handle challenges and setbacks.Strongly Disagree Disagree Neutral Agree Strongly Agree
  13. How do you view your interpersonal relationships with others?Very Poor Poor Average Good Very Good
  14. I feel satisfied with the decisions I make in life.Very Dissatisfied Dissatisfied Neutral Satisfied Very Satisfied
  15. How do you perceive your self-worth and importance in society?Very Low Low Average High Very High
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I want to convert text to a special form that i want. how can i use GAN networks to build this model ? i think it's similar to colorizing the gray image.
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Text-to-Image GAN for converting text to a special form:
  1. Dataset Preparation:Gather a dataset with paired text-image samples. Each text description should be associated with its corresponding image. You may use existing datasets like MS-COCO, or you can create a custom dataset.
  2. Text Encoding:Convert the text descriptions into numerical representations (e.g., word embeddings or one-hot encodings) to feed them into the GAN as input.
  3. Define the Generator and Discriminator:Define the generator network that takes the text embeddings as input and generates images. Define the discriminator network that takes real images from the dataset and the generated images from the generator as input to distinguish between real and fake images.
  4. GAN Architecture:Combine the generator and discriminator to form the GAN architecture. The generator aims to generate images that the discriminator cannot differentiate from real images, while the discriminator aims to correctly classify real and generated images.
  5. Loss Functions:Define the loss functions for both the generator and the discriminator. For the generator, the loss is based on the discriminator's ability to distinguish generated images as real or fake. For the discriminator, the loss is based on its accuracy in discriminating between real and generated images.
  6. Training:Train the Text-to-Image GAN using the paired text-image dataset. During training, the generator learns to generate images that align with the given text descriptions, while the discriminator becomes better at distinguishing between real and generated images.
  7. Image Generation:Once the GAN is trained, you can provide new text descriptions as input to the generator to create corresponding special form images.
Here's a basic code structure using Python, TensorFlow, and Keras for creating a Text-to-Image GAN:import numpy as np import tensorflow as tf from tensorflow.keras import layers, models # Define the Generator and Discriminator architecture (you may customize based on your requirements) # Generator network def create_generator(): # Your generator architecture here # Input: Text embeddings # Output: Generated images pass # Discriminator network def create_discriminator(): # Your discriminator architecture here # Input: Real or generated images # Output: Binary classification (real or fake) pass # Create and compile the GAN model def create_gan(generator, discriminator): discriminator.trainable = False gan_model = models.Sequential([generator, discriminator]) # Compile the GAN model with appropriate loss functions and optimizers pass # Data preparation and training (you should customize this based on your dataset) def preprocess_text(text_data): # Your text preprocessing code here # Convert text descriptions to numerical representations (embeddings or one-hot encodings) pass def preprocess_images(image_data): # Your image preprocessing code here # Normalize and resize images as needed pass # Main function def main(): # Load the paired text-image dataset and preprocess it text_data = ... # Your text descriptions image_data = ... # Your corresponding images text_embeddings = preprocess_text(text_data) image_data = preprocess_images(image_data) # Create and compile the generator and discriminator generator = create_generator() discriminator = create_discriminator() gan_model = create_gan(generator, discriminator) # Number of epochs and batch size epochs = 20000 batch_size = 128 # Training loop for epoch in range(epochs): # Sample a batch of text embeddings and corresponding images batch_indices = np.random.randint(0, len(text_embeddings), size=batch_size) batch_text_embeddings = text_embeddings[batch_indices] batch_images = image_data[batch_indices] # Train the discriminator on real images d_loss_real = discriminator.train_on_batch(batch_images, np.ones((batch_size, 1))) # Train the generator-discriminator stack on random text embeddings to generate fake images random_text_embeddings = np.random.randn(batch_size, embedding_dim) # Random text embeddings generated_images = generator.predict(random_text_embeddings) d_loss_fake = discriminator.train_on_batch(generated_images, np.zeros((batch_size, 1))) # Update the generator using the GAN model g_loss = gan_model.train_on_batch(random_text_embeddings, np.ones((batch_size, 1))) # Print the progress if epoch % 100 == 0: print(f"Epoch: {epoch}, D Loss Real: {d_loss_real}, D Loss Fake: {d_loss_fake}, G Loss: {g_loss}") if __name__ == "__main__": main()
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Dear Researchers.
These days machine learning application in cancer detection has been increased by developing a new method of Image processing and deep learning. In this regard, what is your idea about a new image processing method and deep learning for cancer detection?
Thank you in advance for participating in this discussion.
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Convolutional Neural Networks (CNNs) have been highly successful in various image analysis tasks, including cancer detection. However, traditional CNNs treat all image regions equally when making predictions, which might not be optimal when certain regions contain critical information for cancer detection. To address this, incorporating an attention mechanism into CNNs can significantly improve performance.
Attention mechanisms allow the model to focus on the most informative parts of the image while suppressing less relevant regions. The attention mechanism can be applied to different levels of CNN architectures, such as at the pixel level, spatial level, or channel level. By paying more attention to relevant regions, the CNN with an attention mechanism can enhance the model's ability to detect subtle patterns and features associated with cancerous regions in medical images.
When using CNNs with attention mechanisms for cancer detection, it is crucial to have a sufficiently large dataset with labeled medical images to train the model effectively. Transfer learning with pre-trained models on large-scale image datasets can also be useful to leverage existing knowledge and adapt it to the cancer detection task with a smaller dataset.
Remember that implementing and training deep learning models for cancer detection requires expertise in both deep learning and medical image analysis. Additionally, obtaining annotated medical image datasets and ensuring proper validation and evaluation are essential for developing an accurate and robust cancer detection system. Collaborating with medical professionals and researchers is often necessary to ensure the clinical relevance and accuracy of the developed methods.
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Hello everyone,
How to create a neural network with numerical values as input and an image as output?
Can anyone give a hint/code for this scenario?
Thank you in advance,
Aleksandar Milicevic
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To create a neural network with numerical values as input and an image as output, we can use a deep learning library like TensorFlow or PyTorch. In this example, I'll provide you with a simple implementation using TensorFlow and Keras. This implementation will demonstrate how to generate images from random numerical values using a fully connected neural network. Keep in mind that for more complex image generation tasks, you might need a more sophisticated architecture like a Variational Autoencoder (VAE) or a Generative Adversarial Network (GAN).
Before running the code, make sure you have TensorFlow and Keras installed. You can install them using pip:
pip install tensorflow keras
import numpy as np import tensorflow as tf from tensorflow.keras import layers, models # Define the input size for the numerical values input_size = 100 # Define the output image size (e.g., 28x28 grayscale image) output_image_size = (28, 28, 1) # Function to create the generator model def create_generator(): model = models.Sequential() model.add(layers.Dense(256, input_dim=input_size, activation='relu')) model.add(layers.Dense(512, activation='relu')) model.add(layers.Dense(1024, activation='relu')) model.add(layers.Dense(np.prod(output_image_size), activation='sigmoid')) model.add(layers.Reshape(output_image_size)) return model # Function to create random noise as input for the generator def generate_random_noise(batch_size, input_size): return np.random.rand(batch_size, input_size) # Function to create and compile the combined model def create_combined_model(generator, optimizer): generator.trainable = False model = models.Sequential([generator]) model.compile(loss='binary_crossentropy', optimizer=optimizer) return model # Main function def main(): # Generator model generator = create_generator() # Optimizer for the generator optimizer = tf.keras.optimizers.Adam(learning_rate=0.0002, beta_1=0.5) # Combined model combined_model = create_combined_model(generator, optimizer) # Number of epochs and batch size epochs = 20000 batch_size = 128 # Training loop for epoch in range(epochs): # Generate random noise as input for the generator noise = generate_random_noise(batch_size, input_size) # Generate fake images using the generator generated_images = generator.predict(noise) # Your code here: Instead of random noise, you should use your numerical values as input and preprocess them accordingly. # Train the combined model by passing the generated images as inputs and all 1s as the target (since they are fake) d_loss_fake = combined_model.train_on_batch(generated_images, np.ones((batch_size, 1))) # Print the progress if epoch % 100 == 0: print(f"Epoch: {epoch}, Loss: {d_loss_fake}") # Save generated images occasionally if epoch % 1000 == 0: # Your code here: Save the generated images using your preferred method (e.g., matplotlib or OpenCV). pass if __name__ == "__main__": main()
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  1. Additionally, what factors should be considered when selecting an appropriate image processing algorithm for lineament extraction?
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@Syed Hussain Yes, it is made by Chat GPT, I just want to help you
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Hi! I am working with MODIS images, I need to estimate EVI, to do it correctly, first I need to evaluate the quality assessment data layer and overlap it with the EVI layer to dismiss those pixels that are corrupted. Any idea of a tutorial to do this with qgis?
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you can follow these steps:
  1. Load the Data: Open QGIS and load both the EVI image and the corresponding QA layer into the project.
  2. Understand the QA Layer: Before proceeding, make sure you understand the information encoded in the QA layer. The QA layer typically contains flags or bits that represent the quality or validity of each pixel in the EVI image. Different bits might represent different data quality characteristics such as cloud cover, atmospheric conditions, sensor errors, etc. You need to know which bits indicate reliable data.
  3. Access the Layer Properties: Right-click on the EVI image layer in the QGIS Layers panel and select "Properties."
  4. Define Transparent/Invalid Pixels: In the Layer Properties window, navigate to the "Transparency" tab. Here, you can define which pixels should be considered invalid or unreliable based on the information stored in the QA layer. You can either set specific pixel values to be transparent or use the "Additional no data value" option to exclude unreliable values.
  5. Symbology and Visualization: Adjust the symbology settings of the EVI layer to better visualize the reliable pixels. You can use a color map or a gradient to highlight the areas with good data quality.
  6. Masking: If the QA layer contains specific bits representing unreliable data, you can use the "Raster Calculator" tool to create a mask that isolates only the reliable pixels. The Raster Calculator allows you to define an expression that filters the pixels based on the desired QA bits. For example, you can use a conditional statement to extract pixels with specific bit values indicating good data quality.
  7. Save the Reliable Pixels: If needed, you can save the masked EVI image as a new raster layer, containing only the reliable pixels.
  8. Further Analysis: With the reliable pixels isolated, you can now perform any further analysis or visualization using the clean EVI data.
Keep in mind that the specific steps may vary based on the data format and the type of QA layer provided. It's crucial to refer to the data provider's documentation or metadata to understand the information stored in the QA layer and how to interpret and use it effectively to estimate reliable pixels in the EVI image.
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I am currently conducting research on body image satisfaction and need to find appropriate instruments for measurement. I am looking for tools or questionnaires that specifically assess body image satisfaction among participants.
As I am still a final-year undergraduate student, I prefer to use instruments that are freely available and do not require any payment or subscription.
If anyone could suggest such instruments or questionnaires that have been used in previous research or are commonly available, I would greatly appreciate it.
Thank you in advance!
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What is the state of the art in multimodal 3D rigid registration of medical images with Deep Learning?
I have a 3d multimodal medical image dataset and want to do rigid registration.
What is the art of 3d multimodal rigid registration?
Example of the shape of the data:
The fixed image 512*512*197 and the moving images 512*512*497.
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  1. Convolutional Neural Networks (CNNs): CNNs have been adapted for rigid registration tasks by treating registration as a regression problem, where the network learns to predict the transformation parameters between the two input images directly. The CNNs take pairs of images as input and output the transformation parameters, enabling end-to-end registration.
  2. Spatial Transform Networks (STN): STNs are a type of neural network module that allows the network to learn spatial transformations. STNs can be incorporated into a registration pipeline to learn and apply the necessary transformations between the images.
  3. Image Synthesis: Generative models like Generative Adversarial Networks (GANs) or Variational Autoencoders (VAEs) have been employed to synthesize one modality from another, enabling the transformation of the multimodal images into a common space for registration.
  4. Self-Supervised Learning: Self-supervised learning approaches have been explored, where the network learns registration by designing a pretext task that does not require ground truth correspondences between the images. These methods leverage the inherent multimodal information within the images.
  5. Attention Mechanisms: Attention mechanisms have been integrated into registration networks to focus on informative image regions and improve the alignment process.
  6. Large-Scale Datasets and Transfer Learning: Some researchers have used large-scale datasets or pre-trained models from unrelated tasks (e.g., ImageNet) for transfer learning, boosting the performance of registration networks on smaller medical image datasets.
  7. Metric Learning: Metric learning techniques have been employed to learn distance metrics or similarity functions between images, allowing for more robust and discriminative registration.
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Digital Signal Processing
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DSP (Digital Signal Processing) techniques are widely used in both audio and image processing to manipulate, analyze, and enhance signals in the digital domain. Here's a brief overview of how DSP techniques are applied in each domain:
Audio Processing:
  1. Filtering: DSP techniques such as Finite Impulse Response (FIR) and Infinite Impulse Response (IIR) filters are used for tasks like noise reduction, echo cancellation, and equalization in audio signals.
  2. Compression: Audio compression algorithms like MP3 and AAC use DSP techniques such as Discrete Cosine Transform (DCT) and psychoacoustic modeling to reduce the file size while maintaining perceived audio quality.
  3. Speech Processing: DSP is used for speech enhancement, speech recognition, and text-to-speech synthesis, which are essential in applications like voice assistants and communication systems.
  4. Audio Effects: DSP is used to create various audio effects like reverb, chorus, and flanger, which are commonly found in music production and audio post-production.
  5. Pitch and Time Scaling: DSP techniques allow altering the pitch and time of audio signals without affecting the overall quality, which is useful in applications like audio editing and time-stretching.
Image Processing:
  1. Filtering: DSP filters like convolution kernels are used for tasks like image smoothing (e.g., Gaussian blur) and edge detection (e.g., Sobel operator).
  2. Image Compression: Techniques like Discrete Cosine Transform (DCT) and wavelet transform are used for image compression (e.g., JPEG and JPEG2000).
  3. Image Enhancement: DSP techniques are used to enhance image quality by adjusting brightness, contrast, and color balance.
  4. Image Restoration: DSP is used to restore degraded images by removing noise, blurring, or artifacts caused by compression or transmission.
  5. Feature Extraction: DSP techniques are used to extract features from images, such as texture, edges, and corners, which are useful for image recognition and computer vision tasks.
  6. Image Segmentation: DSP methods are used to partition images into meaningful regions or objects, enabling further analysis and understanding of image content.
  7. Morphological Operations: DSP is used in morphological operations such as erosion and dilation for image processing tasks like noise removal and shape detection.
Both audio and image processing rely on a wide range of DSP algorithms and techniques to achieve specific objectives, and advancements in DSP continue to drive innovations in these fields, enabling a variety of applications from entertainment to medical imaging to security.
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Hi, I am trying to perform a radiometric calibration of an Aster image on ENVI, I watched a youtube tutorial where they use the Radiometric calibration tool, but when I tried to do it on my computer the Radiometric Calibration tool is not displayed, does anyone has an idea of why, I already restarted either the program and the computer but it seems it's not helping.
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Hi ,
There are a few reasons why the Radiometric Calibration tool might not be displaying in ENVI. Here are a few things to check:
  • Make sure that you have the latest version of ENVI installed. The Radiometric Calibration tool was added in ENVI 5.3, so if you are running an older version, the tool will not be available.
  • Make sure that the image you are trying to calibrate is a supported format. The Radiometric Calibration tool only works with certain types of images, such as Landsat, Sentinel-2, and Aster.
  • Make sure that the image you are trying to calibrate has the correct metadata. The Radiometric Calibration tool needs to know the gain and offset values for each band in the image in order to perform the calibration.
  • If you have checked all of these things and the Radiometric Calibration tool is still not displaying, you can try contacting ENVI support for help.
Here are some additional troubleshooting tips:
  • Try opening the image in a different image viewer to see if the metadata is correct.
  • Try exporting the image to a different format and then opening it in ENVI.
  • Try reinstalling ENVI.
I hope this helps !
Please recommend my reply if you find it useful .Thanks
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I have performed anti-Oct-4 staining with A488 on a colony of hiPSCs. In ZEN, I have applied an intensity channel (rainbow) to the image. As you can see, the highest intensity is located in the nucleus of the cells.
Is there any way to add an intensity scale bar to the image?
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Calibration bar cannot be applied to RGB or Composite image, You need to first reduce the colour depth then apply gradient to the image before inserting the Calibration bar.
Try the following steps:
1. Convert the Image to 32-bit; Image>Type>32-bit
2. Apply LUT; Image>Lookup Tables>Viridis (or any 3-level colouring gradient is suggested although 2-level gradient will also work fine)
3. Insert Calibration bar; Analyze>Tool>Calibration bar.
I hope this will help.
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As I found, most CNN backbones (resnet, convnext, inception, efficientnet etc.) work in RGB. I have a dataset with greyscale images. My question is: What is the standard way to convert greyscale to RGB in order to make it work with RGB-backed CNN models available?
What I am currently doing is: `adapter = tf.keras.layers.Conv2D(3 ,1)` - essentially takes 1 channel as input and outputs 3 channels with a kernel size of 1. An alternative way can be to simply copy the BL value (say 140) to RGB (140,140,140). Are there better approaches that I already mentioned?
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Md. Asif Haider You can either modify your model input layer to accept one channel images. (So e.g., 128x128x1x1, instead of 128x128x3x1)
Or just convert your images to RGB
rgb_image = cv2.cvtColor(gray_image, cv2.COLOR_GRAY2RGB)
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Dear everyone,
what should be the most advisable pattern of actions in case I have detected one of my results (an image) was used without my permission by the researchers from my previous University? They published it without acknowledging or mentioning me and, moreover, they did not know about the sample preparation protocol I used, resulting their interpretation being completely wrong and misleading. They have cut a part from the original image and photoshopped a fake info bar to make it look like the two images (mine and their) were both measured with the same instrument and conditions.
I have contacted the journal referring to their own publishing policy and providing unambigious proofs of my authorship over this image - however, the journal, knowing all the details and acknowledging that the image does belong to me, did not seem to be invested in scientific part and immediately redirected details of my inquiry to those authors and offered to "maybe, acknowledge me". These authors have already plagiarised my manuscript before and I successfully returned it and got my name in it - but all of that was with the help of editorial board, whilst in this case the editorial board is rather attacking me.
A question: what to do if the journal is protecting plagiarism?
Thank you!
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Discovering that your research results (an image) have been used without your permission by researchers from your previous university can be a concerning situation. Here are the recommended steps you can take to address the issue:
  1. Gather Evidence: First, make sure you have concrete evidence that the image in question is indeed your original work and was used without proper attribution or permission. Collect all relevant documentation, data, and records to support your claim.
  2. Contact the Researchers: Reach out to the researchers or the department involved in using your image. Be polite and professional in your communication. Express your concern about the unauthorized use of your work and request an explanation for the situation.
  3. Review University Policies: Familiarize yourself with the intellectual property policies of your previous university. Understand the rules and regulations concerning ownership and usage of research work, including images and data.
  4. Consult with Advisors or Mentors: If you had advisors or mentors at your previous university, consider seeking their guidance on how to handle the situation. They may have experience in dealing with such issues or can offer valuable insights.
  5. Document Communications: Keep a record of all communications with the researchers or the university regarding the unauthorized use of your work. This includes emails, letters, and any other forms of communication.
  6. Review Copyright Laws: Familiarize yourself with copyright laws in your country or the country where your previous university is located. Understanding your rights as a creator of original work can be helpful.
  7. Request Proper Attribution or Removal: Depending on the situation, you may request proper attribution for your work if it was used inappropriately, or you may ask for the image to be removed from any publication or platform where it was used without permission.
  8. Seek Legal Advice (if necessary): If your efforts to resolve the issue amicably are not successful or if you believe your rights are being infringed upon, you may want to consult with an intellectual property lawyer for legal advice and further action.
  9. Contact the University Administration: If direct communication with the researchers or department does not yield results, you can escalate the matter to the university administration or the office responsible for research ethics and intellectual property rights.
  10. Notify Journals or Publishers (if applicable): If the image was used in a publication without your permission, consider contacting the journal or publisher to report the unauthorized use and request appropriate actions.
Remember that each situation may be unique, and the best course of action will depend on the specifics of your case. It's essential to handle the matter professionally and calmly, seeking resolution through appropriate channels.
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Dear all,
I am working on Optical Coherence Tomography (OCT) and I need to analyse 100s of OCT images automatically. Is there any algorithm used for OCT image analysis that does not require programming skills?
Thanks
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import numpy as np import matplotlib.pyplot as plt from skimage import io, filters # Load the OCT image image_path = 'path_to_your_image.png' image = io.imread(image_path) # Display the original image plt.figure() plt.imshow(image, cmap='gray') plt.title('Original OCT Image') plt.axis('off') # Preprocessing # Apply a median filter to reduce noise image_filtered = filters.median(image, selem=np.ones((3, 3))) # Image segmentation # Apply a threshold to segment the image threshold = filters.threshold_otsu(image_filtered) image_segmented = image_filtered > threshold # Display the segmented image plt.figure() plt.imshow(image_segmented, cmap='gray') plt.title('Segmented OCT Image') plt.axis('off') # Further analysis and measurements can be performed on the segmented image # Show the plots plt.show()
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I think it could be easier getting first the image.
I need to do a matrix and without the image (really complex) I think it's near impossible.
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The Pauli group is a mathematical concept that was first introduced and defined through matrix calculations, rather than through drawings or diagrams. The concept of the Pauli group is based on a set of 2x2 matrices, known as the Pauli matrices, which were first introduced by physicist Wolfgang Pauli in the 1920s to describe the behavior of elementary particles.
The Pauli matrices are defined as follows:
σ_x = [ 0 1 ]
[ 1 0 ]
σ_y = [ 0 -i ]
[ i 0 ]
σ_z = [ 1 0 ]
[ 0 -1 ]
These matrices have several important properties, including that they are Hermitian (equal to their own conjugate transpose) and unitary (their inverse is equal to their conjugate transpose). These properties make them useful for describing quantum states and operations.
The Pauli group is a group of operations that can be performed on a quantum system using the Pauli matrices. It is generated by the tensor product of the Pauli matrices with themselves, and it has several important applications in quantum information processing and quantum computing.
While diagrams and drawings are sometimes used to visualize the operations of the Pauli matrices and the Pauli group, the concept itself was first defined and developed through matrix calculations and algebraic operations.
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As a researcher, image classification is an area where images are the primary data used in various domains such as agriculture, health, education, and technology. However, ethical considerations are a significant concern in this area. How should ethics be handled and taken into account?
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When using image classification models in real-world applications, several ethical considerations arise. Here are some of the key ethical considerations:
  1. Bias and Fairness: Image classification models can inherit biases from the training data, leading to unfair outcomes and potential discrimination. These biases can disproportionately affect certain groups based on factors such as race, gender, or age. It is crucial to ensure that the training data is diverse and representative of the population to mitigate bias and promote fairness.
  2. Privacy and Consent: Image classification models often require access to personal images or video data. Respecting individuals' privacy rights and obtaining informed consent is essential. It is necessary to clearly communicate the purpose, scope, and potential risks of data collection and usage. Transparency in data handling practices and providing options for individuals to opt out or have their data removed are crucial for maintaining ethical standards.
  3. Security and Protection: Image classification models may deal with sensitive or private images, such as medical or biometric data. It is imperative to implement robust security measures to protect this data from unauthorized access, breaches, or misuse. Adhering to industry best practices and regulations, such as encryption, access controls, and secure storage, helps ensure data protection.
  4. Accountability and Transparency: Developers and organizations utilizing image classification models have a responsibility to be accountable for their actions. This includes being transparent about the model's capabilities, limitations, and potential biases. Users should be informed about the decision-making process behind the model's predictions, enabling them to understand and challenge the outcomes if necessary.
  5. Impact on Society: Image classification models can have broad societal impacts. They can reinforce stereotypes, perpetuate biases, or contribute to social inequalities. Understanding and mitigating these impacts is crucial to ensure that the technology benefits all individuals and does not exacerbate existing disparities.
  6. Algorithmic Governance and Regulation: As image classification models become more prevalent and influential, there is a need for appropriate governance and regulation. Policymakers and regulatory bodies should ensure that ethical considerations, fairness, and accountability are addressed in the development, deployment, and use of image classification models.
  7. Human Oversight and Decision-Making: While image classification models can automate decision-making processes, it is important to maintain human oversight. Critical decisions should not be solely reliant on the model's predictions. Human judgment and intervention are necessary to address complex ethical dilemmas, interpret the context, and consider individual circumstances.
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Hello all
I am currently simulating wind turbines without contacting the generator (attached image) I have adopted a steady wind speed of 12 m / s but the system response (mechanical energy) is incorrect. Where is the problem ... who can help me ??
thank's.
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I think the ansys program is very important to create simulation for wind turbine.
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Currently, I am doing research in image filtering. I came across this strange result where with an increase in sigma value PSNR decreases while SSIM increases.
I will attach a document where I have discussed it more thoroughly.
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The Peak Signal-to-Noise Ratio (PSNR) and Structural Similarity Index (SSIM) are two commonly used metrics for evaluating the quality of reconstructed or processed images.
In image processing, the sigma value is often associated with the amount of smoothing or blurring applied to an image. Increasing the sigma value leads to a higher degree of smoothing or blurring. The effect of increasing the sigma value on PSNR and SSIM can be explained as follows:
  1. PSNR: PSNR measures the difference between the original image and the processed image in terms of peak signal power and mean squared error. Higher PSNR values indicate a smaller difference between the original and processed images, which is desirable.
When the sigma value is increased, more smoothing or blurring is applied to the image. This blurring can cause loss of high-frequency details and fine textures in the image. As a result, the mean squared error between the original and processed images increases, leading to a decrease in PSNR. In other words, the blurring introduced by a higher sigma value results in a larger difference between the original and processed images, which lowers the PSNR value.
  1. SSIM: SSIM measures the structural similarity between the original and processed images by considering luminance, contrast, and structural information. Higher SSIM values indicate a higher similarity between the two images, which is desirable.
When the sigma value is increased, the blurring effect can help to reduce noise and enhance the overall structural similarity between the original and processed images. The blurring can smooth out noise and minor variations, making the images more similar in terms of structure. Therefore, increasing the sigma value tends to improve the SSIM value because the structural similarity is enhanced.
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Bio-medical Image Processing
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Biomedical image processing encompasses a wide range of techniques used to analyze and manipulate images obtained from various medical imaging modalities. Here are some of the different types of biomedical image processing techniques:
  1. Image Enhancement: Techniques used to improve the visual quality or highlight specific features of an image. This includes methods like contrast enhancement, noise reduction, sharpening, and histogram equalization.
  2. Image Registration: Alignment and fusion of multiple images acquired from different imaging modalities or time points. It allows the comparison, integration, and analysis of images from various sources.
  3. Segmentation: The process of partitioning an image into meaningful regions or objects. It involves techniques such as thresholding, region growing, edge detection, and clustering to separate different structures or tissues of interest.
  4. Feature Extraction: Identifying and extracting relevant features or characteristics from images. These features can be used for further analysis, classification, or quantification. Examples include texture features, shape descriptors, or intensity-based features.
  5. Classification and Recognition: Techniques to classify or recognize specific patterns or objects within an image. This may involve machine learning algorithms, pattern recognition techniques, or deep learning approaches for tasks such as tumor detection, organ segmentation, or disease classification.
  6. Image Reconstruction: The process of creating a high-quality image from acquired data, especially in imaging modalities like computed tomography (CT), magnetic resonance imaging (MRI), or positron emission tomography (PET). Reconstruction algorithms aim to improve image resolution, reduce artifacts, and enhance image quality.
  7. Image Fusion: Combining multiple images or data from different modalities to create a composite image with integrated information. This can provide a more comprehensive understanding of the underlying structures or functional properties.
  8. Image Analysis and Quantification: Techniques for extracting quantitative information from medical images, such as measuring volumes, lengths, or intensities of structures. These measurements can be used for diagnostic purposes, treatment planning, or monitoring disease progression.
  9. Image Visualization: Methods for displaying and rendering medical images in a visually informative and interactive manner. Visualization techniques include volume rendering, surface rendering, multi-planar reformatting, and virtual reality-based visualization.
  10. Computer-Aided Diagnosis (CAD): Development of algorithms and systems that assist healthcare professionals in the interpretation and analysis of medical images. CAD systems can aid in detecting abnormalities, providing second opinions, or assisting in decision-making processes.
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I'm trying to predict a disease based on both facial features and questionnaires.But I have two different datasets such that one is on the question and answers with labelling and the other is with images and labels as well. I mean both the datasets are different but they predict the same thing. How can I merge and use these datasets together to predict using deep learning?
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Hello,
One thing you can do is to convert the images to tabular data. That way you'll end up with a coherent data. However, doing so will going to probably undermine your overall accuracy.
Another thing, and possibly the most logical solution is to either use multi-modular models or to use three models, one for tabular, one for images and one as the final decision maker. Given you chose to do the second option, you need to construct the final layer of both of the initial models in a way that they'll map, transform and output the results in a format that is coherent enough for the final decision making model to receive.
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JacoP plugin is widely used for the co-localization analysis
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Sorry outside my field
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How to set scale bar in the image using image j? What to mention against "known distance" in the setting scale menu?
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Hello, this tutorial video contains how to analyze tube formation using imagej
This tutorial video contains how to set scale
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Hi 👋
i use image j to analyze my band of western blot previously i select band then analyze it by plotting curve and calculating area under curve .. recently when i analyze band this appear with no any curve draw .. what may be the reason ?? Iam new user for this application …