Science topic

Git - Science topic

Explore the latest questions and answers in Git, and find Git experts.
Questions related to Git
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Like Github but with additional feature for hosting
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You should understand that hosting of php application is also potentially more difficult and tricky task for hoster, than just making git repository - e.g. external user or developer can easilly generate a huge load on server, so some limitting of your php scripts should be implemented. Thus, it should be hard to find free or low-cost and robust solution for hosting server-side-working, but simple to find free or inexpensive storage or even storage+versioning+collab service (like github you mentioned).
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Machine learning has come a long way since early 1940's. Everyday I read so many papers about new improved models that has better accuracy/lower error rate compared to the one's that already exist. One of the major consumers of these models are industries. My question is going to have be of two parts
1. Have you programmed your ML model in one of the most popular languages such python & R and shared it in Git?
2. When you proposed a model or a new techniques or a workflow, have you ever considered a feature on implementing this in production environment? If so, how did you do it? <this is where most industries struggle today>
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Python is the only language I use for ML/AI works.
Regarding the deployment, I think the question should be more related with the 3V of the data. I have seen applications deployed on cloud with huge clusters, pipelines and high amount computing power to process data coming like a rain (talking about streaming for every milliseconds). Otherwise, I think for R&D and demonstration purposes, an interactive notebook hosted on cloud might be more than enough.
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3 answers
Do you know of any reference that indicates how to quantitatively measure the effort needed to merge two commits or branches?
A first intuition is that the effort depends on:
- the number of files to merge
- the number of conflicts
- the number of LOCs to merge
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Thanks Michael for your answer
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In order to search for Source codes in a better and optimal way.
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A good alternative is GitLab, https://about.gitlab.com/
Is like GitHub, but include some tools for the software delopment.
Although it's worth mentioning that GitHub is already commercial; it has premium accounts, so if you're worried about Microsoft buying it, you don't have to worry about it.
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Fasting hyperglycemia and diabetes mellitus;
In clinical laboratory practice I had seen so many cases of type-II diabetes mellitus who gets a diagnosis of diabetes mellitus based upon raised fasting glucose but once u subject them with glucose load they easily manage there load. No doubt that fasting hyperglycemia is not not normal but i guess relying simply on fasting hyperglycemia, we may be overdoing the diagnosis part and in my personal opinion i feel w-hour postprandial glucose tolerance in an other wise healthy subject with any GIT pathology must be given to all subjects. Another thing which i have realized that once these subjects with fasting hyperglycemia reduce theri liver fat, they can overcome fasting hyperglycemia.
So fasting hyperglycemia and postprandial glucose tolerance are two varied concepts and the latter is a serious category. Then even thin, lean sometimes show poor glucose tolerance. And to me the latter category is worrisome rather than isolated fasting hyperglycemia.
So anybody wishes to comment on this? OR explain OR give some reasoning behind this?
Warm regards
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Gerrit vs Github: for code review and codebase management:
Gerrit Code Review for Git: provides web based code review and repository management for the Git version control system. https://www.gerritcodereview.com/
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aflatoxin B1 is low weight and diffused out metabolized from GIT tract. I think Aflatoxib B1 also can appear in milk.
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B1 convert to M1 after metabolization process in liver and transfer into milk.
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I am an experienced DOTA player and be interested about this project and try to get more details.
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I installed drude implementation files from charmm website. Here's URL: http://mackerell.umaryland.edu/charmm_drude_ff.shtml.
On my linux server Downloads directory, I did the procedure
1. git clone git://git.gromacs.org/gromacs.git
2. cd gromacs
3. git checkout drude
After doing this, I tried using gromacs command, but it shows warning: Unknow left-hand 'drude' in parameter files
there's 5 more warnings showing similar warning like above.
How could I fix that problem?
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I checked, but there's no drude option in mdout.mdp file.
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Dear all,
I'm trying to follow the Tutorial I of Phyluce. I already trimmed and assembled the example data, but when I try to work on "Finding UCE loci" and run:
phyluce_assembly_match_contigs_to_probes \ --contigs trinity-assemblies/contigs \ --probes uce-5k-probes.fasta \ --output uce-search-results
I receive an error: "Version: git fatal: Needed a single revision"
Have someone had this error on the Phyluce pipeline?
Could anyone help me?
Thanks a lot!
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Please can you help me by providing me with a book name or a reference containing SAR of antiemetic agents and other GIT drugs.
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1 answer
Can you help me, Pls 
where can I git DDoS Attack Dataset 
I needed urgently If you have 
Thank you very much 
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You can have a look at ID2T (https://git.tk.informatik.tu-darmstadt.de/SPIN/ID2T-toolkit), which is a toolkit that enables you to inject realistic DDoS attacks into any pcap file
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Hi,
There are many platforms that provide hosting services for software developers(e.g. Atlassian's Bitbucket, Github) for free, many open-source projects are hosted on these platforms and the data related to development process of these projects including commit histories, pull logs, number of contributors, etc are all available to the public; Some projects get extremely popular(for instance, a project has received many likes in Github), For example Docker(https://github.com/moby/moby; The original repository has been renamed to Moby), Now I'm asking, What are the features that popular open-source software project artifacts might have in common which makes it probable to predict that a particular project on Github, for instance, is going to be popular?
For instance:
- Does choosing a particular programming language helps?
- Do project need reach a minimum number of contributors? or a certain tipping point?
- Does a popular project always have a small dedicated team of core developers committing 24/7?
Do you know any previous research done on a similar problem?
Thanks,
Hassan
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A couple questions to get you started:
  1. how many unique fork and clone request are made to a git repo
  2. how many contributors
  3. how often those contributors make commits
Small commits can make a big impact, so size doesn't always matter.
Github provides contributor metrics. I'm not sure about fork/clone metrics.
Hope that helps. Cheers!
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5 answers
Hello,
Inflammatory bowel diseases are chronic autoimmune diseases of GIT. Medical treatment and other therapies are used to reduce inflammation and suppress the overactive immune system.
So, Share your experience in management of pediatric inflammatory bowel disease and discuss the current treatment, life style goals and approaches.
Thanks for all
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Thank you Dr. Wesam for raising such an interesting topic for discussion. As im mainly concerned about Adult Rheumatology, ive seen less cases with IBD. In order to optimize the management it is always in comanagement with the Pediatrician and Gastroenterologist, provided the patient develops articular invovlement and becomes a seronegative spondyloarthritis (SpA) case. Furthermore, a good up to date reference is the Textbook of Pediatric Rheumatology:
Yet, for more detailed literature on IBD in children, the following article is informative:
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3 answers
Hello,
As we know, Inflammatory bowel diseases are chronic autoimmune disorders of GIT. Medical treatment and other therapies are used to reduce inflammation and suppress the overactive immune system.
So, Share your experience in management of pediatric inflammatory bowel disease and discuss the current treatment, life style goals and approaches.
Thanks for all
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Following
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Like most of you I've been using SCM systems for decades (CVS, SVN & Git) so I'm pretty confortable using them. Indeed my current EPF projects are kept in personal git repos. This projects are modeled using the Eclipse Process Framework (EPF) Composer, an Eclipse-RCP standalone application.
My doubt is how im/practical is doing team development with EPF Composer sharing git repos/patches. It's my first time developing with modeling tools:
  • Is there any possibility to loose model consistency with successful merged commits?
  • If so, can merge conflicts be solved as usual? I mean: I don't care to open a text editor to fix this or that, but I'm uncertain about keeping the model consistency.
PS: My current EPF experience with git is as an external tool. Not sure if using something internal as Egit would imply a different behavior.
Thanks in advance.
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Hello everybody,
As we know the importance of probiotics for our health and GIT problems So, I'd like to ask about their role in irritable bowel syndrome?
Thanks
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When we do fluoroscopy from ileostomy, colostomy,I use insert catether in stoma, but without balooning it can reflux. so I doing balooning in stoma, anyone know how much balooning in diameter, we can do in ileostomy and colostomy?
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A foley catheter currently fits to ileostomy, and in colostomy too in many cases.
Anyway you can try an irrigation set, too
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1 answer
I'm trying to clone the respository for VCFtools into GitHub and configure it. These two scripts always run successfully in GitBash:
However, I cannot get the next two scripts to work:
./autogen.sh ./configure
Whenever I try the first script, I get the following error message:
matth@DESKTOP-FKTJ1JU MINGW64 ~/vcftools (master)
$ ./autogen.sh
./autogen.sh: line 3: autoreconf: command not found
All the files are in the GitHub folder on my computer (the GitHub folder is in Documents, in case that makes a difference). I need this program for my Masters thesis. Does anyone have any idea what's going on?
Please help if you can. Thanks in advance.
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Install autoconf (use this commands)
sudo apt-get update sudo apt-get install autoconf
Hope It will help you.
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Dear all,
What is the advantages of GitHub and GitLab in currently?
What is the differences between GitHub and GitLab?
Could you share how do you like to use the GitHub/GitLab?
Thank you very much.
Best regards,
Yu-Da
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t is a web hosting service for version control using Jet Git. It is mostly used for computer codes. It provides access control and many collaboration features such as error tracking, feature requests, and task management
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4 answers
I'd like to see the source code for the project and the theorems proved with it.
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We are enhancing Isabelle: at the moment through libraries, in the future aiming for advanced assistance through machine learning, as stated in the proposal.
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3 answers
Candida albicans is a dimorphic organism, a common commensal of oral cavity. It exists harmlessly in oral cavity, GIT, nose and many other sites of the body. In some situations it changes its nature and transforms into pathogens capable of causing infections. Why these transformations occur? Is it due to a change in micro-environment or due to a change in organism itself?
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Candida albicans is often harmless, kept in balance with other members of the local microbiota, However, many factors can change the status of C.albicans from harmless microorganism to serious pathogen, such factors are:-
-alteration in host-microbiota due to prolong uptake of antibiotics.
-Changes in host immune response during stress, infection by another pathogen, or immunosuppressant therapy.
-Variation in the local environment such as a shift in pH or nutrition content.
Best Regard
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1 answer
Porin channels are present in epithelium (GIT) and endothelium (blooe vessels) for permeation of hydrophilic substances. Then why highly hydrophilic drugs are given I/V instead of oral route?
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The attached article sheds more light on your question.
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I think, ndoscopy is not essential for effective management of most of the UPPER GIT diseases.
Please share your view with research data
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I honestly believe that upper GI Endoscopy is essential for many upper GI diseases as a diagnostic as well as therapeutic tool. Diagnostic Biopsy, therapeutic hemostasis, Vareceal ligation are definitely added advantages. Steakhouse syndrome is corrected mostly by endoscopic manipulation.
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1 answer
Kindly share our experience with film array by BioMerieux for syndromic diagnosis using Meningitis/encephalitis, respiratory, GIT panel
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I didn't, it is so expensive.
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What are the differences between tonic and rhytmic contractions in the body, specifically in the GIT?
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4 answers
I want to determine colon-specific delivery ability of nanoparticles designed in our study in comparison with Eudragit-s nanoparticles loaded with budesonide. I tried 100ug BUD which is recommended dose (0.4mg/kg), collect GIT segments after 8 hours and extract with methanol and analyse but not detected by HPLC, most probably BUD is degraded as reported in different studies. Can I use a high dose to make easy for analysis? Your suggestion will be appreciated.
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Maybe you could try rectal delivery if you are trying to get budesonide in the colon. This might defeat the purpose of the study, but it would probably work.
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We found some side-effect /GIT issues/ with using HRW. Thanks.
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3 answers
A git repository or any other codebase please.
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Check these two (the second one although not in C# could be used as a good reference):
as well as:
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8 answers
I am very interested if I could get the answers in terms of pharmacological perspective
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You very welcome!
Robert
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3 answers
Recently I have done a research which is a new study in performing arts. Now, my question is: how I could get proofreading this statement "no research has been conducted about it so far"?  
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I do not see a major 'stylistic' problem in your short statement. But, as an editor, I would be a bit skeptical that there is nothing (zero) done. Even if it were true, I would expect that  the literature review section of your paper demonstrates such a glaring research gap with a comprehensive 'related research' account.
For example, so and so did a study in this area...they argued....however, their research did not address  (the issue we are addressing in this paper). XX discussed a related issue in the domain of .....but most of its arguments lack empirical support....
Like that...
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I want make extraction and purification of protein form agricultural wastes for using in special nutrition
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4 answers
I'd like to start an online lab notebook that is completely open and readable, shared with lab assistants and the world (explained on wikipedia: https://en.wikipedia.org/wiki/Open_notebook_science).  I'd also really like a whole online system for lab management- project organizing, sharing multiple notebooks and datasets.. Any suggestions?  I work in genetics and ecology but I think the system could be from any field.  Thanks!
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Hi Sean,
I was in a similar position a while ago soI did quite a lot of research on the topic and tested several existing ELNs. I decided to write a review article on the topic, to help others in the same situation.
You can find my review article bellow.
Hope it helps!
Cheers, Luka 
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ist BCS classification is CONCIDER only for GIT ????? or applicable to the hole part of the body?
How to add folder to git repository?
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Sir / Madam,    How to add folder to git repository ? When I use git add for adding folder, it shows error. I mentioned underline is warning error. Anyone suggest solution for it.
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It's just a warning. It's a Unix/Windows line end issue. You can turn this off git config core.autocrlf true More details in a link bellow: http://stackoverflow.com/questions/5834014/lf-will-be-replaced-by-crlf-in-git-what-is-that-and-is-it-important
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Hello,
How to clone a git project by specifying parameter in the remote port ?
my SSH server listening on 54321
My command GIT :
git clone git@MyServer: 54321: /var/git/MyProject.git
Cloning into 'MyProject' ...
ssh: connect to host MyServer port 22: Connection refused
fatal: Could not read from remote repository.
Please make sour you-have the proper access rights
and the repository exists.
why git talking about port 22 ?
Thank you for your help,
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You need to provide the protocol name.
git clone ssh://git@MyServer: 54321: /var/git/MyProject.git
More info on stack overflow
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For example, My model looks like this:
Git=αGit-11Controlit2Focusit+ui+viit
Where, 
G - GDP per capita Growth rate
Git-1- lag of GDP per capita Growth rate
Another base regression model,
G=α+β1Initial GDP per capita+β2Controlit3 Focusit+ui+viit
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I don't have a short answer to this question, but to check out some of the technical issues involved (there are many), I would refer you to the a paper that I co-authored with Romain Wacziarg in 2009 in the Journal of Economic Growth, and a current working paper that I have entitled  "Endogeneity and Growth Regressions".  Both papers should be available through my Research Gate profile.  Good luck!
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Are there any tools to collect fecal samples directly from GIT compartments?
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The aim is to get get a representative sample when sampling 3 times a day for 3 days. when is the right time to start faecal sampling?
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Ferreira et al. (2007), " Estimation of feed intake and apparent digestibility of equines and cattle grazing on heathland vegetation communities using the n-alkane markers''. is the only available literature.
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How will convert simulated GIT fluid PH from 1.2 to 7.8? For the Invitro dissolution study of Meloxicam loaded microparticles ?
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Dear Dr.Sayed
Kindly find the attachment for the preparation of simulated
biological fluids that may be used as dissolution media to evaluate different pharmaceutical dosage forms. You can alter/addition of reagents in the composition table.
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Dear Oleksander ,
Today, February 6th, 2017 TESLA quoted CEO Musk “Lithuania knows the way to our heart” for its submission of a virtual reality tour for a 5.i Billion Dollars’ European Factory :
The purpose of REACT.JS meetups is to re imagine original iterations such as my Shak Mat proposal . In order to prepare, I am accepted to REACT.js meet ups that began, January 1, 2017. https://www.meetup.com/boston-react/members/217298805/ .
.
My Git Hub examples include:
Exemplar # 1. is an EON Virtual Reality : Aquatronics “Immersive Water and Sewage Simulator " presentation : https://www.eonreality.com/brazilian-team-wins-aquatronics-competition-with-virtual-reality-component-at-the-43rd-worldskills-competition-in-sao-paulo-2015/ .
EON OFFERS, Virtual Reality tools, http://cmap.ihmc.us/docs/learn.php
MAMBA: GAME BOARD (SOURCE CODE) https://github.com/yangmillstheory/mamba .
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Dear Oleksander ,
Here, in this corner of the World, MIT and Harvard hold great sway in terms  of Innovative Technological advance in Science and Technology .
Simply stated : One Github account  can yield exponential  outcomes  for software developers  https://github.com/hyunchel
Thank you !
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one example is Globulins present in Clostrum that absorbed as globulins without converting into polypeptide or amino acids.i want to know  more about such proteins.Thanks
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Phaseolin, Soybean Beta-conglycinin, most other protein allergens derived from peanut, soybean, mustard, egg and milk are resistant to proteolysis in the stomach.
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Hi everyone.
I want to install the BioGraPy package on conda, so I can use it in python . Acording to the installation instructions, I've tried with git clone, pip install and conda install, but it doesn't work, instead it appears an error that say conda can't found the package in conda's channels. If you know how to solve this problem, please give me a hand.
Thank you in advance.
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cefpodoxime is BCS IV class drug so I am trying to enhance its solubility. but I am not able to understand that from which part of GIT it is absorbed.
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Cefpodoxime proxetil is a slightly basic compound, absorbed from
the gastrointestinal tract after oral administration and hydrolyzed to its parent moiety cefpodoxime acid by nonspecific esterases in the intestinal wall. The reasons for low oral bioavailability of cefpodoxime proxetil are mainly attributed to low water solubility (400μg/ml), typical gelation behavior of cefpodoxime proxetil particularly in acidic environments, and pre-absorption luminal metabolism of its ester side chain by digestive enzymes cholinesterases present in the intestinal lumen into cefpodoxime acid.
References:
- Kakumanu VK, Arora V, Bansal AK. Investigation of factors
responsible for low oral bioavailability of cefpodoxime proxetil.
Int J Pharm. 2006;317:155–60.
- Kakumanu VK, Arora V, Bansal AK. Investigation of physicochemical
and biological differences of cefpodoxime proxetil
enantiomers. Eur J Pharm Biopharm. 2006;64:255–9.
- Manciet SC, Huneau JF, Decroix MO, Tomb D, Farinotti R,
Chaumeil JC. Cefpodoxime proxetil esterase activity in rabbit
small intestine: a role in the partial cefpodoxime absorption. Int J
Pharm. 1997;149:241–9.
- Schellens JHM, Malingre MM, Kruijtzer CMF, Bardelmeijer HA,
Tellingen OV, SchinkelHA, et al.Modulation of oral bioavailability
of anticancer drugs: from mouse to man. Eur J Pharm Sci.
2000;12:103–10.
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cefpodoxime is BCS IV class drug so I am trying to enhance its solubility. but I am not able to understand that from which part of GIT it is absorbed.
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You need to check whether cefpodoxime proxetil belongs to weak acidic or weak basic drugs. Generally, weak acidic and weak basic drugs are more soluble in basic and acidic medium, respectively.
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2 answers
I need a tutorial of mining git repository using python. Please I need your recommendation about the books I have to read.
Thank you.
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Nicotinic acetylcholine receptor is an ion gated channel and I would like to know whether the allosteric modulation of this receptor will affect the GIT motility.
As GIT is innervated by sympathetic and parasympathetic innervation, will modulation of the nicotinic receptor increase the release of Ach, which then enhance the GIT motility?
If acetylcholinesterase inhibitor is given to gut tissue, it inhibits Ach breakdown and enhance the GIT contractility. So, I am interested to know whether allosteric modulation of the nicotinic receptor will influence GIT motility as well.
Hope to get fruitful insight from you! Thanks!
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i have silver nano particles after FTIR results i git the peaks and results are
The peak at 1620 cm-1 refers to carbonyl stretch, which is assigned to the amide I bond of protein. The peaks at 1373 refer to amino and amino-methyl stretching groups of protein. The peaks at 920 cm-1 refer to C-O stretching vibrations mode. The carbonyl groups of the amino acid residues and the peptides have strong ability to bind to the silver . It is also reported that the proteins can bind to nanoparticles either through free amine or cysteine groups in proteins
now i have question that i have used silver nitrate and fructose,, the i want the explanation of (amino-methyl stretching groups of protein)
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Measure the FTIR spectrum of fructose and compare
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GIT protection
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الانتظام الغذائي وتناول الفيتامينات والمعادن الموجودة في العديد من الأغذية كالفواكه وغيرها
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i did a pharmacokinetic study using formula containing high concentration TPGS and i found severe destintion in GIT tract after 8 hours with death
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In vitro study for the digestion of compounds requires the same enzymes and chemicals as used in the Gastro-Intestinal Tract (GIT) model. so what would be the difference or similarities among them?
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Palak Mahajan To the best of my knowledge in vitro accessibility is not a commonly used term. Most likely the scientists have developed an assay including some kind of binding and came up with this description to make clear that they measured something else/new.
You should go back to the original publication to find out what they did and decide for yourself (together with a supervisor/colleague) what to do with this information.