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Questions related to Git
I want to implement any model from GitHub, but I cannot implement git clone git@github.com:username/repository.git. Although I did the following steps, could you help me:
I use Windows 11.
I installed Python.
I installed "MobaXterm" and did SSH setup.
I did linking "VScode" to "MobaXterm".
I installed "Git" on Windows and also on "MobaXterm".
I have account in GitHub.
I implemented git config --global http://user.name "myusername" and git config --global user.email "my.email@example.com".
I implemented also ssh-keygen -t rsa -b 4096 -C "my.email@example.com", eval $(ssh-agent -s), ssh-add ~/.ssh/id_rsa, and cat ~/.ssh/id_rsa.pub.
I copied the SSH key and pasted it on my account in GitHub.
Hello everyone,
I'm pretty new to QE and Unix environment in general.
Wanting to explore QE I downloaded the source code from their site. The configuration was successfuls but when trying to compile the program with make I get this error:
Initialised empty Git repository in /home/qe/external/lapack/.git/
usage: git remote add [<options>] <name> <url>
-f, --fetch fetch the remote branches
--tags import all tags and associated objects when fetching
or do not fetch any tag at all (--no-tags)
-t, --track <branch> branch(es) to track
-m, --master <branch>
master branch
--mirror[=(push|fetch)]
set up remote as a mirror to push to or fetch from
fatal: 'origin' does not appear to be a git repository
fatal: Could not read from remote repository.
Please make sure you have the correct access rights
and the repository exists.
fatal: 'FETCH_HEAD' is not a commit and a branch 'recorded_HEAD' cannot be created from it
make[1]: *** [extlibs_makefile:23: liblapack] Error 128
make[1]: Leaving directory '/home/qe/install'
make: *** [Makefile:228: liblapack] Error 2
I tried on a windows machine using minGW/msys2, with a VM, and on a Linux machine running Ubuntu.
Does anyone know How to solve this?
Thank you so much!
What actually the reason of change of anode material, why due to charging anode material act again as electron reservoir so that Li ion or Na ion can take it. It would be helpful if I got the answer of this reversible behaviour during charging and discharging.
Dear colleagues! I've tried to estimate the histone variants enrichment of several arabidopsis genomic sites but every time my enrichment result looks like the added screenshot. What am I doing wrong?
The running function is:
enr.df <- enrichment(query =gr_list[[1]], catalog = anno, shuffles = 24, nCores = 12)
anno is remap2020_histone_nr_macs2_TAIR10_v1_0.bed,
catalog is a GRanges of sites of interest of A.thaliana (all 5 chromosomes).
There are no warnings after function execution.
I tried to regenerate the result on CTR-GCN [1] . The given code works well at initially. Then i changed my GPU Card to RTX 3090ti. After that, install all the Nvidia drivers. But now, when i run the model I get "WARNING:root:NaN or Inf found in input tensor" this warning and brings the accuracy very low.
If anyone comes across this situation please do help me to solve this problem.
I need a collaborator with experience in code development and, if possible, numerical analysis too.
I am currently developing an open source code in python that can be used to solve different kinds of Integral Equations.
In the last one and half years I have done some work in numerical Algorithms for integral equations with some papers already published. It has culminated to several python codes which I have used to produce the results.
The codes are all private but the results are published so I am inclined to make these codes publicly available so that others can use them at no cost and minimum effort.
I, therefore, need a fellow Researcher who has good skills in software engineering and numerical analysis to join me in this line.
A minimum requirement is the knowledge of git and python.
You can email me at nwaigwe.chinedu@ust.edu.ng
A very interesting topic, "quantification of randomness" in mathematics it is sometimes reffered to as "complex theory" (although it is more about pseudorandom than randomness) that is based on saying that a complicated series is more random and then there are tests for randomness in Statistics and perhaps the most intriguing test related to information theory -"entropy"(as also being of relevence to and result of second law of thermodynamics), while there are also random numbers generators (pseudorandom numbers generators) and true random numbers generators using quantum computing.
So, what I've been trying to, is making a complete list of all available algorithms or books or even random number generators that will allow me to tell me how much random a series is, allowing me to "quantify randomness".
There are 125 unique infinite series which are pseudorandom that I have discovered and generated based on a rule, now how do I test for randomness and quantify it? Uf the series is random or there is probably a pattern, or something that will allow me to predict the next number in the series given I don't know what the next number is.
Now, do anyone know of any github links based on any of the above? ^ (like anything related to quantifying randomness in general that you think will be helpful).
A book/books on quantifying randomness will be very very helpful too. Actually anything at all...
Hello. I want to ask if anyone knows methods for survivability in simulated GIT fluids and also aggregation (auto- and co-aggregation) using well plates (24 or 96 wells) for lactic acid bacteria? We want to use an absorbance microplate reader to hold the experiments.
If we change bacteria in GIT will lead to behavioral change .
One of the common problems in data science is gathering data from various sources in a somehow cleaned (semi-structured) format and combining metrics from various sources for making a higher level analysis. Looking at the other people's effort, especially other questions on this site, it appears that many people in this field are doing somewhat repetitive work. For example analyzing tweets, facebook posts, Wikipedia articles etc. is a part of a lot of big data problems.
Some of these data sets are accessible using public APIs provided by the provider site, but usually, some valuable information or metrics are missing from these APIs and everyone has to do the same analyses again and again. For example, although clustering users may depend on different use cases and selection of features, but having a base clustering of Twitter/Facebook users can be useful in many Big Data applications, which is neither provided by the API nor available publicly in independent data sets.
Is there any index or publicly available data set hosting site containing valuable data sets that can be reused in solving other big data problems? I mean something like GitHub (or a group of sites/public datasets or at least a comprehensive listing) for the data science. If not, what are the reasons for not having such a platform for data science? The commercial value of data, need to frequently update data sets, ...? Can we not have an open-source model for sharing data sets devised for data scientists?
I have an issue. Lonafarnib is taken twice daily (morning, afternoon). If (in theory) we constructed orally administered nanoparticles and encapsulate the drug (to reduce GIT adverse effects) how could I also achieve to create a preparation that it would need to be taken only once daily? By using sustained release mode? And if so how? I am quite lost.
Thank you in advance
SARS-CoV 2 is an enveloped virus. Enveloped viruses are known for their fragile nature and the inability to survive the passage through the gastrointestinal tract (damage by stomach acid). Several published reports confirmed the presence of both RNA and the viable Virus particles from stool and rectal swab samples.
My Question how this is possible???
Hello,
I am actually working on probiotic lactic acid bacteria, can you help me, please to know the preferable percentage of viability of LAB after its passage through the GIT
for example, if my initial viability is 100 % what is the minimum needed after treatment with bile or acid?
Thank you
I'm trying to clone the respository for VCFtools into GitHub and configure it. These two scripts always run successfully in GitBash:
git clone https://github.com/vcftools/vcftools.git
cd vcftools
However, I cannot get the next two scripts to work:
./autogen.sh
./configure
Whenever I try the first script, I get the following error message:
matth@DESKTOP-FKTJ1JU MINGW64 ~/vcftools (master)
$ ./autogen.sh
./autogen.sh: line 3: autoreconf: command not found
All the files are in the GitHub folder on my computer (the GitHub folder is in Documents, in case that makes a difference). I need this program for my Masters thesis. Does anyone have any idea what's going on?
Please help if you can. Thanks in advance.
I think, ndoscopy is not essential for effective management of most of the UPPER GIT diseases.
Please share your view with research data
In vitro study for the digestion of compounds requires the same enzymes and chemicals as used in the Gastro-Intestinal Tract (GIT) model. so what would be the difference or similarities among them?
Porin channels are present in epithelium (GIT) and endothelium (blooe vessels) for permeation of hydrophilic substances. Then why highly hydrophilic drugs are given I/V instead of oral route?
When we do fluoroscopy from ileostomy, colostomy,I use insert catether in stoma, but without balooning it can reflux. so I doing balooning in stoma, anyone know how much balooning in diameter, we can do in ileostomy and colostomy?
Candida albicans is a dimorphic organism, a common commensal of oral cavity. It exists harmlessly in oral cavity, GIT, nose and many other sites of the body. In some situations it changes its nature and transforms into pathogens capable of causing infections. Why these transformations occur? Is it due to a change in micro-environment or due to a change in organism itself?
Hello,
Inflammatory bowel diseases are chronic autoimmune diseases of GIT. Medical treatment and other therapies are used to reduce inflammation and suppress the overactive immune system.
So, Share your experience in management of pediatric inflammatory bowel disease and discuss the current treatment, life style goals and approaches.
Thanks for all
Machine learning has come a long way since early 1940's. Everyday I read so many papers about new improved models that has better accuracy/lower error rate compared to the one's that already exist. One of the major consumers of these models are industries. My question is going to have be of two parts
1. Have you programmed your ML model in one of the most popular languages such python & R and shared it in Git?
2. When you proposed a model or a new techniques or a workflow, have you ever considered a feature on implementing this in production environment? If so, how did you do it? <this is where most industries struggle today>
aflatoxin B1 is low weight and diffused out metabolized from GIT tract. I think Aflatoxib B1 also can appear in milk.
Fasting hyperglycemia and diabetes mellitus;
In clinical laboratory practice I had seen so many cases of type-II diabetes mellitus who gets a diagnosis of diabetes mellitus based upon raised fasting glucose but once u subject them with glucose load they easily manage there load. No doubt that fasting hyperglycemia is not not normal but i guess relying simply on fasting hyperglycemia, we may be overdoing the diagnosis part and in my personal opinion i feel w-hour postprandial glucose tolerance in an other wise healthy subject with any GIT pathology must be given to all subjects. Another thing which i have realized that once these subjects with fasting hyperglycemia reduce theri liver fat, they can overcome fasting hyperglycemia.
So fasting hyperglycemia and postprandial glucose tolerance are two varied concepts and the latter is a serious category. Then even thin, lean sometimes show poor glucose tolerance. And to me the latter category is worrisome rather than isolated fasting hyperglycemia.
So anybody wishes to comment on this? OR explain OR give some reasoning behind this?
Warm regards
The aim is to get get a representative sample when sampling 3 times a day for 3 days. when is the right time to start faecal sampling?
Do you know of any reference that indicates how to quantitatively measure the effort needed to merge two commits or branches?
A first intuition is that the effort depends on:
- the number of files to merge
- the number of conflicts
- the number of LOCs to merge
Kindly share our experience with film array by BioMerieux for syndromic diagnosis using Meningitis/encephalitis, respiratory, GIT panel
i have silver nano particles after FTIR results i git the peaks and results are
The peak at 1620 cm-1 refers to carbonyl stretch, which is assigned to the amide I bond of protein. The peaks at 1373 refer to amino and amino-methyl stretching groups of protein. The peaks at 920 cm-1 refer to C-O stretching vibrations mode. The carbonyl groups of the amino acid residues and the peptides have strong ability to bind to the silver . It is also reported that the proteins can bind to nanoparticles either through free amine or cysteine groups in proteins
now i have question that i have used silver nitrate and fructose,, the i want the explanation of (amino-methyl stretching groups of protein)
cefpodoxime is BCS IV class drug so I am trying to enhance its solubility. but I am not able to understand that from which part of GIT it is absorbed.
cefpodoxime is BCS IV class drug so I am trying to enhance its solubility. but I am not able to understand that from which part of GIT it is absorbed.
one example is Globulins present in Clostrum that absorbed as globulins without converting into polypeptide or amino acids.i want to know more about such proteins.Thanks
How will convert simulated GIT fluid PH from 1.2 to 7.8? For the Invitro dissolution study of Meloxicam loaded microparticles ?
For example, My model looks like this:
Git=αGit-1+β1Controlit+β2Focusit+ui+vi+εit
Where,
G - GDP per capita Growth rate
Git-1- lag of GDP per capita Growth rate
Another base regression model,
G=α+β1Initial GDP per capita+β2Controlit+β3 Focusit+ui+vi+εit
I'd like to start an online lab notebook that is completely open and readable, shared with lab assistants and the world (explained on wikipedia: https://en.wikipedia.org/wiki/Open_notebook_science). I'd also really like a whole online system for lab management- project organizing, sharing multiple notebooks and datasets.. Any suggestions? I work in genetics and ecology but I think the system could be from any field. Thanks!
A git repository or any other codebase please.
I want to determine colon-specific delivery ability of nanoparticles designed in our study in comparison with Eudragit-s nanoparticles loaded with budesonide. I tried 100ug BUD which is recommended dose (0.4mg/kg), collect GIT segments after 8 hours and extract with methanol and analyse but not detected by HPLC, most probably BUD is degraded as reported in different studies. Can I use a high dose to make easy for analysis? Your suggestion will be appreciated.
Like Github but with additional feature for hosting