Science topic
Fatty Acids - Science topic
Organic, monobasic acids derived from hydrocarbons by the equivalent of oxidation of a methyl group to an alcohol, aldehyde, and then acid. Fatty acids are saturated and unsaturated (FATTY ACIDS, UNSATURATED). (Grant & Hackh's Chemical Dictionary, 5th ed)
Questions related to Fatty Acids
I have been reading a paper that evaluated the association between low, medium and high intake of certain food groups and risk of disease relapse. I am trying to understand the odds ratio results in the paper.
So my question is relating to table 4:
Doesn't an OR of 0.22 (p=0.007) for medium intake of processed meat and an OR of 0.31 (p=0.005) for total n-3 (in the paper's table 4) mean that processed meat and n-3 reduce risk of relapse when consumed in moderation? Or am I misunderstanding the stats?
I measured the fatty acids in the fish, using the internal standard method in the national standard method, I first extracted the fish oil with cable extraction, please ask me how many grams of oil should be weighed when saponification and methyl ester
What is the source of energy for plants in the seed and seedling stages, prior to photosynthesis? The seeds have lipid, but also substantial carbohydrate. Do they use carbohydrate during germination? Also, general sources say the fatty acids are converted to glucose (using the glyoxylate cycle) to provide an energy source. But that would also require energy; why not just oxidize the fatty acid? The sequence of utilization must be known. My own area is mammailan metaboism, but I just finished reading "The terroir of whiskey" and became interested in how and when grants utilize their energy sources.
I need help with docking a fatty acid and insulin receptor IR3, I have tried the docking and got an reference RMSD value of 38.59 and binding energy of -3.39. The exact step I have followed is
Adding Polar Hydrogen - Adding Kollmann Charges -Write PDB - Open Ligand -Detect root - Choose root - Save Ligand - Grid - Choose Macromolecule - Choose Ligand - Grid Box - Save gpf - Running Autogrid - Running Autodock using Genetic Algorithm and Lamarckian Algorithm
I have also tried minimizing the energy of the fatty acid using Avagadro.
Kindly help.
How to use the internal standard method to determine the fatty acids in fish, determine the absolute content, there are detailed steps?
My liposome is a non-phospholipid liposome (sterosome) composed of palmitic acid and cholesterol, 20mg of palmitic acid and 70mg of cholesterol.
After a month of storage in a refrigerator at 4 degrees Celsius, the particle size increased from about 140 nm to 180 nm. Although the increase in particle size was not exaggerated due to cholesterol, it still increased. I would like to ask what the possible reason is ?
I know it may be sedimentation or self-aggregation, but my zeta potential is about -48mV.... I still can’t think of any other possible reasons. Since saturated fatty acids are not easily oxidized, could you please tell me what other possible reasons there are? I hope there is some literature support.
Thank you.
I needed help to get the published final version of a research article titled:
"Alterations in placental long chain polyunsaturated fatty acid metabolism in human intrauterine growth restriction".
Authors: Stephanie Skuby Chassen;
Veronique Ferchaud-Roucher;
Madhulika B. Gupta;
Thomas Jansson;
Theresa L. Powell
In the PDF link available, it is mentioned that it is the accepted manuscript but not the final verison of the record.
I was unable to contact the authors due to technical issues.
It would be of great help if anyone could do the needful.
Hello,
I am performing esterification reactions between fatty acids and alcohols, in presence of methanesulfonic acid and H3PO2 as catalysts. At the end of the reaction, to reach the acid index I want, as well to neutralize the catalysts, I use NaOH, 30 % solution. At the end of the reaction, I perform filtration by using some powders. What I observed is that after a while the acid index increases, this being un inconvenient, because it should be in a certain range. I believe that this might be the effect of an reversible reaction, which means that the catalysts are still active.
What can I use at the end of the synthesis for the neutralization of the catalysts to be sure that the reversible reaction won't take place? or may be there are some composite able to adsorb them?
thank you in advance,
Elena
Hey guys.
I have been working with a hypothetical protein that binds fatty acids (which we don't know what they are) and I can purify this protein without any major problems. Mass spectra as well as other biophysical measurements indicate the presence of ligands that we believe to be hydrophobic (such as fatty acids and lipids).
However, I would like to find protocols to extract these ligands and apply them in TLC. I don't mind disrupting the structure of the protein but I need this extraction to be successful.
Thanks
Hi,
I have been trying to find the most appropriate protocol for myself to treat mouse splenocytes with fatty acids, but I am not sure what the most appropriate condition is for the experiment.
I have checked fatty acid levels in mouse plasma using mass spec and am trying to mimic the concentrations detected by mass spec. The plasma free fatty acids (FFA) was extracted using 90% methanol. The question is what is the best method to treat cells with different FAs if I want to mimic the plasma Fatty acid levels in culture?
I am considering between the two conditions below for my experiment
1. Complex FA to BSA and use FA-albumin complex to treat the splencoytes for the assay
2. Dissolve FA in an appropriate solvent (i.e. DMSO, ethanol, etc) to make FFA solution.
If any of you could give me great advice/explanation, that would be really appreciated. Thanks for your help!
Kind Regards,
Takumi
I am trying to undersatnd the bond formation and and functional group interaction at the biinding sites and a list of possible products that can be formed.
for example the binding of Palmitic acid and 1,8 cineole in ethanol at 60 degrees celsius
I am interested in viewing fatty acid treated vs untreated tissue to know if the fatty acid was taken by the whole tissue during treatment.
Dear all,
Can you please suggest me how to calculate the Limit of Free Fatty acids in Emulsion samples (O/W) by using titrimetric procedures.
I saw these on a same step of conversion of Malonyl CoA to Malonyl-ACP. Could anyone clarify this? I add that reference link below.
KEGG PATHWAY: Fatty acid biosynthesis - Chlorella variabilis (genome.jp)
Hi everyone!
I am testing free fatty acid in coconut oil and coconut oil treated with microbial cells. For the GC/FID I am using a methylation (methanolic HCl at 90 degrees celsius) approach to convert the free fatty acids to methyl ester counterparts. For LC/MS, I am simply dissolving the oil in isopropanol for analysis.
Based on the LC/MS, the amount of free fatty acid in the regular coconut oil is greater than in the microbially treated one. However, based on the GC/FID, there is more in the microbially treated coconut oil.
Has anyone had something similar? Divergent answers from two techniques?
Thanks!
I have some pre-Hispanic pottery samples on which I conducted the procedure established by the Archaeological Prospection Laboratory of UNAM for chemical residues (phosphates, protein residues, fatty acids, etc.). I have several samples with high fatty acid content. I would like to perform a lipid analysis on the samples that have tested positive (using chromatography or a similar technique). Could you recommend laboratories that offer this service externally? I would appreciate any information regarding this matter.
First, I mixed Hydroxypropyl Methylcellulose with DI-Water till homogeneous, then I poured KOH solution into the Hydroxypropyl Methylcellulose mixing and heated to 60 - 65 degrees Celcius.
The fatty acid was heated to 65 - 70 degrees Celcius to liquid and poured into the Hydroxypropyl Methylcellulose - KOH mixing (main tank), btw the temperature of the main tank after putting fatty acid increased to 8 - 15 degrees Celcius. Is the increase possible from the fatty acid solution or the reaction of fatty acid and KOH solution? How to control the temperature main tank around 70 - 75 degrees Celcius?
I have milk digesta and I need to quantify free fatty acids using FAME with GCMS. Can I extract the lipid fraction by Folch method then inject directly without further extraction of the free fatty acid fraction from the lipid fraction?
If there is a modified E. coli strain and we want to observe if it produces more fatty acids than the non-modified, what kind of analysis, tools, equipment are needed? Is there a simple way?
Thank you for your attention and time.
Hi everyone,
I am looking to develop a method for analysis of free fatty acids in oil (coconut, canola, olive... etc.). I've noticed that there are some methods out there that simply use isopropanol to dilute the oil and then they do MS scan (usually high resolution) to profile the acids. Does anyone have experience with LC/MS analysis of fatty acid content of oils? Seems a bit to simple to just dilute-and-shoot oil into an instrument (sounds like a dirty sample)... but I could be wrong! Can you please share your thoughts with me? Thanks!
We recently carried out FAME (Fatty Acid Methyl Ester) experiment. We have the raw data but our Midi software is not updated.
Are there any softwares where we can analyse our FAME data for bacterial species identification?
Hello!
I am looking for an isolation and purification protocol for 10-HDA (Royal Jelly’s main fatty acid). I have searched the internet, but did not find any possible method to extract this bioactive compound and further use it in various experiments, for example on cell cultures. I only found methods on how to determine the quantity of 10-HDA but I don’t want to determine it for this particular experiment I want to do.
I came up with an idea for 10-HDA extraction from RJ, but I’m not sure if it would work:
1. Extraction of total lipids from RJ using the Soxhlet extractor.
2. Separation of the (total) RJ lipids using electrophoresis.
3. Obtaining 10-HDA (isolation from total lipids).
4. Purification of the obtained 10-HDA (and lyophilization for better preservation).
5. Use of the fatty acid in experiments.
Does anyone know if this idea would work and how I could practically apply the idea in the lab? What reactives and equipment are needed to fulfill my goal? Any suggestions on how to do this extraction and obtain postive results?
Thank you!
Dear colleagues,
being interested in lipid metabolism reprogramming, I have preliminary data showing our cellular models do not display increased fatty acid synthesis.
By gas chromatography, I analyzed the fatty acid profile of these cells and would be interested if someone knew which fatty acids to pick up, and whether there is a ratio to calculate, to highlight fatty acid synthesis in these cancer cells.
I read that the sum of [16:0], [16:1c9], [18:0], [18:1c9] and [18:1c11] may reflect FAS, however, since the cells can also take up these fatty acids from the medium, it is not so clear to me whether this is very specific to FAS.
Thanks in advance for your help !
Hello!
I am looking for a purification protocol for a fatty acid found in royal jelly, namely 10-HDA (10-hydroxy-2-decenoic acid). Does anyone have experience with the separation and purification of this bioactive compound?
My research is about finding the accumulated patten of the fatty acid of camellia oleifera,which is a kind of tree that we usually get the edible oil from its seeds. so I have sent some seed samples to the company to do the transcriptome.
The reference genome comes from the passage:"The genome of oil-Camellia and population genomics analysis provide insights into seed oil domestication"。The anthor provided the only reference genome for camellia oleifera in NCBI:https://www.ncbi.nlm.nih.gov/genome/?term=camellia+oleifera
My transcriptome data only have the geneid but not the gene symbol,maybe the genome anotation is not so complete ? And it do exist some annotation like this :gi|684183365|gb|AIN52151.1| stearoy-l ACP desaturase [Camellia oleifera]. I wonder how to obtain gene symbols for the hub genes I have identified from the WGCNA analysis.
Are there any strategies or methods for obtaining gene symbols from GI numbers using R, or any other tools?
THANKS!
Some research has suggested that compound specific fatty acids may be used as tracers of soil erosion. My question is whether or not different plant species generate fatty acids with different environmental persistence due to subtly different molecular structures? Specifically, are the fatty acids derived from pine trees more or less biodegradable than the fatty acids derived from elm, ash, or poplar trees. Any, information of the biodegradability of fatty acids by plant species would be very helpful. Thanks in advance.
Can all unsaturated fatty acid be converted to eicosanoids?
In the ketogenic diet MCT oils are frequently consumed. But if cancer cells are able metabolize these oils am I not putting myself at risk?
Dear wise person,
I have recently conducted TMT proteomics of cultured cells.
I am unsure about how certain the detection is.
Do I understand it correct mass spec cannot distinguish between 2-hydroxypropionic acid (lactate) and 3-hydroxypropionic acid since they have the exact same molecular weight?
Also goes for differentiating e.g. omega- from beta-hydroxy fatty acids?
Eicosanoids are generated from fatty acids but I was wondering where this conversion takes place? In the cells or outside of the cells?
Hello all,
We have perfomed a methylation either by using KOH-methanol transesterification or by using BF3 as catalyst , after injection using GC MS of the hexanoic phase we have fatty acids peaks just at the appearance but when integrating them they are apparently identified as dodecanamides!
Can you please help us to find out what might be the cause of this result knowing that this the first time with this failure!
regards
I hope everyone is healthy and safe
I would like to ask a question about how to combine oil or fatty acids with starch to create an oil-modified starch. (What are the steps or procedures that are taken to obtain an oil-modified starch?)
In fact, I found a lot of research, but there are no articles explaining the methods of modification in detail. Therefore, if there is any article that explains this method, please provide me with it.
My sincere thanks to you
biofilm:it's made up of bacteria,fungi,periphytes.
Hi everyone,
I am following a protocol to conjugate palmitic and oleic acid with fatty acids-free BSA. I dissolve the acids in 0.1 M NaOH to create a 100mM stock and then I add this to 5% BSA to create a 2.5mM stock. After this, I mix the fatty acids-BSA complex with my media to get a final concentration of 0.350uM of fatty acids. However, when I add this mix to my cells (adipocytes) sometimes I see that the cells break down immediately and when I look through the normal microscope after I change the media I only see lipid droplets floating instead of cells at some parts of the wells. The cells at these parts are gone, so I assume that they break down. Has anyone experienced something like this? This has also happened to my control which has only BSA with NaOH without the fatty acids. Can it be the PH? I don't experience this all the time and now in all the wells of the same plate so it is very confusing.
What is a reliable source for absorption spectra of free fatty acids? I have absorption spectra for multiple free fatty acids that I'd like to compare with. I've only been able to locate a few publications.
TIA
I'm trying to develop a milk fat quantitation method by spiking fats/fatty acids in skimmed cow milk to around 1.5% fat (w/w). Curious if anyone has experience in this regard. If you have ever used this approach and managed to dissolve fats/fatty acids in milk, what kind of additional sample prep have you used?
I am looking forward to hearing your suggestions.
So long-chain fatty acids are dependent on the carnitine shuttle to enter the mitochondria but I read that short chain fatty acids do not require carnitines. I was wondering how and where short-chain carnitines are formed and what their roles are.
Moreover, can we find the change in binding capacity or chemical activity of functional groups of an organic compound when it is transformed into a nanomaterial?
Dear All,
I am working with E. coli and want to determine its fatty acid content using GC-MS. I have converted fatty acids into FAMEs by chloroform/methanol method and have my samples in n-Hexane. I have never operated GC-MS hence I have no idea about its program to be set in order to achieve good resolved peaks.
Can anyone please help me with a standard protocol to analyse FAMEs using GC-MS?
Thanks in advance!
I am saponifying filtered cooking oil to produce a soap. I just want to keep the fatty acid salts ( surfactants). I am washing out the product with a solution of NaCl to remove the glycerin. But it's not completely working, there are still some traces of glycerin and unsaponified oils. Is there some other way (or a complementary way) to purify and separate the fatty acids salts (surfactants) from the other components?
We are looking for mass spectra for the compounds I list below. We haven't been able to find any online, and were hoping that somebody may have then available and share them with us? Our work is around self metathesis of fatty acid ethyl esters, and the compounds below are products that we would like to quantify with GC-MS. Any help or advice would be much appreciated.
6,9,12-Octadecatriene
6,9-Pentadecadiene
6,9-Octadecadiene
6-Pentadecene
1,21 diethyl henicosan-9,12-dienedioate
1,24 diethyl tetracosan-9,12,15-trienedioate
ethyl 9 Pentadecenoate
ethyl henicosan-9,12-dienoate
There is an hydrogenation reaction happening in between Fatty Acid Wax Esters and Hydrogen gas at a temperature of 200 degC and pressure of 240 barg to produce Fatty Alcohol. The lab analysis of Fatty Alcohol shows the presence of aldehyde and methyl esters. I know how aldehyde are formed but unaware of methyl esters forming.
I believe the C–C bonds is breaking as a side reaction and thus forming methyl ester. Can anyone tell if that is really possible?
PS: There is no methanol or ethanol used anywhere .
Hi! I am measuring changes in glucose uptake in primary adult cardiomyocytes after addition of fatty acids. I am using a 1:100 dilution of CD lipids. Glucose uptake is measured by fluorescent 2-DG. Currently with an n=3 mice, 5 technical replicates per mouse, I observe that glucose uptake increases with addition of lipids, but according to the literature, it seems like the opposite should happen. I cannot find a study that directly looked at fatty acid induced glucose uptake, only ones that found fatty acid oxidation inhibits insulin mediated glucose uptake, or high glucose uptake promotes lipogenesis. Could someone please share their expertise? Any help is appreciated. Thank you.
Is it better to performing biological activities of oil extracted from seed before or after esterification processes?
Is there a good non radioactive way to visualise both unsaturated fatty acids and saturated fatty acids separated on silver-TLC? Conventionally we feed bacteria with radioactive acetate, but that is not doable in my current institution.
Hello everyone,
My lab plans to use Phospholipid Fatty Acid Stable Isotope Probing (PLFA-SIP) to see if a specific microbe utilises a certain substrate as a carbon source. Luckily our microbe has a unique lipid molecule only found within its group.
However, we are trying to figure out what analytical machine will be best for our purposes. I have found in some literature using gas chromatography/isotope ratio mass spectrometry (GC-c-IRMS). Therefore, would this be suitable for detecting potential isotope uptake in our microbe?
Thank you very much
Is there perhaps a way to convert mg FAME/g fish performed on GC-FID to g lipid/100g fish? We had enough sample to analyse fatty acids but not enough to measure total fat. Unfortunately I do not have the retention factors of the equipment. Sample weight in 30mL CM was 50 mg. 10 000ul of this solution was transmethylated. We used 100ug C17 internal standard.
Any recommendations are welcome
how to calculate percentage of oil, methanol and Naoh, or koH in biodiesel production?
I studied more research articles, they have mentioned the molar ratio of oil to alcohol i.e 1:6, 1:12. 1:30. I would like to know about that calculation. I referred some books, they mentioned by calculating the three fatty acid in oil and alcohol but the oil is having more number of fatty acids around 5 -7. Some oils have different fatty acids present also.
Hello,
I have got an opportunity to have analysed fatty acids through chromatography. Fatty acids of my main interest are alpha-linoleic acid (ALA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA).
My study examines effect of omega-3 FA enriched diet and exercise on cognitive impairment and muscles (m. gastrocnemius, EDL, soleus) of old rats and how we can promote healthy aging by these interventions.
I would like to analyse FA in plasma and brain homogenate (cortex, hippocampus).
Which FAs should I have analysed beside ALA, EPA and DHA to have some meaningful results?
Do you have some experience in this field? I would be glad, if you can share your thoughts.
Some compounds like,
1-Hexen-4-ol, 1-chloro-3,5-dimethyl
3-Methyl-hepta-1,6-dien-3-ol
p-Cymene
Linoleic acid is also known as 18:2 w6, but in my experiment, 18:2 w3 and 18:2 w9 are also detected. I was wondering what they are called. Are they completely different from 18:2 w6 or are they derived from that fatty acid?
I was wondering if anyone had any experience with measuring lipid (fatty acids) using tissue that has been stored in RNAlater?
Can anyone suggest me a center for doing bacterial fatty acid methyl ester analysis GC-MS- FID of with nominal charges in bengaluru(anywhere in Karnataka), pune, Mumbai or kerala?
Thankyou in advance
#FAME #gcmsfid #gcms#kerala #bengaluru
Hello everyone. Hope this question find you well.
I was recently reading about fatty acids because my master thesis is going to be about them and the most of their perspectives, like a review. And a question arose since I read in a book that there are some trans-unsaturated fatty acids found in nature (microalgae, bacteria, plant, etc), I can assume why and their reasons to be, but my question is that if these trans-unsaturated fatty acids can turn in cis fatty acids because some enviromental condition, as a reduction in the environmental stress to which it may have been subjected the sample.
I was searching for some information that can answer my question, but nothing at the moment. I'll appreciate so much your help with this. Thank you!
Is this possible to extract respiratory quinones, fatty acid methyl esters and polar lipids from bacterial broth or need to freeze dried first?
Required suitable protocol
I did an experiment which involved adding DHA to a cancer cell line. Most research suggests that the cells should be affected by its addition at the concentrations I used. However the cells did not show any affect to it. Could this be because DHA was not dissolved or taken up by cells: it was dissolved in PBS, what should have been used?
I have plated some glioblastoma cells in a 24 well/plate, and am looking to see the impact that adding DHA (the fatty acid) to these cells has. From my reading I expect there to be an accumulation of lipid droplets, followed by an increase in cell death (ferroptosis) as the excess lipids undergo peroxidation. I was planning on staining the cells after 72 hours, however by this point surely the cells will be dead. Most papers stain after 24 hours. I only have one plate seeded.
Should I stain after 24 hours, and if so, can I continue to image the cells at 48 and 72 to see if their survival rate after each day?
I am working on a project to extract dioxins from edible oils using ionic liquids for which I need their IFT values.
I am not able to find a suitable research paper for the same.
Any help would be useful and valuable.
Thank You!!
When i take my biodiesel (Fatty Acid methyl ester) to test GCMS, laboratory person asked me that what kind of solvent to be used to dissolve biodiesel..
I have extracted fatty acid fraction using preparatory-HPLC. Can someone suggest how to measure its concentration?
Hi everyone,
I need to prepare ngm plates supplemented with fatty acids to grow C. elegans. Thus, I would like to know which solvent can I use to dilute fatty acids (myristic acid and linoleic acid) to make a stock solution?
Thank you
I need to culture my bacterial strain in a minimal medium with fatty acids as the sole carbon source. I received the solid powder of stearic and linolenic acid which are in the pure form (not a sodium salt). I need a total of 1mM as my working concentration. I tried with ethanol but as I am working with the minimal medium I prefer other options. One publication has mentioned using 1% tergitol as the surfactant but I could not find the protocol. Is there any practical option for dissolving these fatty acids?
Any help is highly appreciated. Thanks in advance.
Fatty acid methyl esters percentage from GC-MS data
I have a great method for analyzing and separating fatty acid methyl esters (FAMEs). I have been posed with asking if there was a way to analyze were they all elute together making one peak. From what I know and what I've looked up, there really isn't. This is why I have posed the question. Thanks!
I'm going to administer palmitic fatty acid to my animals by oral gavage (80 mg) and I need to dissolve it in 5% DMSO, but I can't dissolve it since the amount of DMSO I need is too small for the amount of FA. Could someone please indicate me some other solvent that is not toxic to animals?
While methylation of the fats for fatty acid analysis, what is the possibility of conversion of a saturated straight chain fatty acid to a branched chain fatty acid. Because after fatty acid analysis the results are showing more of branched chain fatty acids. For example my sample are detected with Isolauric Acid and Isomyristic acid rather than Lauric and Myristic acid.
Has anyone isolated and characterized simple straight chain fatty acid sugar esters from plants? Kindly share your experiences.
I wish to study the effect of autophagy inhibition on lipid accumulation in HepG2 cells when treated with free fatty acids (palmitic acid and oleic acid). I have observed that HepG2 cells when treated with free fatty acids have increased levels of lipid accumulation. My treatment compound reduces this lipid accumulation. It also induces autophagy.
However, when I try to inhibit autophagy with chloroquine and 3-MA, lipid accumulation reduces even further. Inhibition of autophagy significantly reduces lipid accumulation in my experiments. Whereas, available literature suggests inhibition and impairment in autophagy leads to an increase in lipid accumulation.
Can someone guide me through this discrepancy in data? Looking forward to your kind inputs. Thank you in advance.
I was entrusted with the project to find out the experimental procedure of producing Fatty Acid Chloride using Palmitic Acid and Thionyl Chloride, mostly the resources online are general so I need help in regards of the procedure, and precautions when handling the chemicals used.
Thank you in advance!
I am studying the relationship of the gut microbiota and inflammation to chronic metabolic diseases
Hello. Do you think spontaneous formation of esters of phenolic compounds and fatty acids is likely, if all the necessary components and lipases are present in the medium, for example, when preparing food.
Sincerely, Timur.
Thanks for the answer.
Hi,
I am doing a experiment with two essential Fatty Acids and Cells. For this I need to prevent the oxidation of the fatty acids. I heard I can use a N2 gas in order to keep the oxygen away. Does anyone know what is needed and how to to achieve this?
Floris
I am writing a research protocol on the nutritional quality of commonly consumed meats, that's why I would like to know the method or the most suitable method
I want to know whether all fatty axids go through beta-oxidation or if there are only several types of fatty acids that undergo this process
Given an unknown oil, if I wish to find different fatty acids present in that oil, is there any experimental technique to do the same.
What can be inferred from saponification value of ester oil? It is well known that saponification number is related to the MW of fatty acid but the fact of existing unsaponifiable matters hinders the conclusion. Generally, I am wondering can we find any clue about the alcohols and acids making up the ester from saponification or even ester value of an ester oil?