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Environmental Epidemiology - Science topic

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What kind of jobs a PhD in environmental epidemiology can do after Ph.D.? Data analysis or research associate etc etc? Please enlist some or share your experience?
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Public health positions are available at various levels of government health agencies, military bases, and university public health schools. They are involved with environmental compliance in various manufacturing companies and industries. And those with experience are in demand by environmental law firms as expert consultants in legal cases.
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Hi,
I have to check the added effect of heatwave. I will add temperature variable along with heatwave variable in the model to get the added effect of heatwave. The RR of heatwave will depict the added heatwave effect or RR for temperature will show the added heatwave effect?
If RR of heatwave will show the added heatwave effect then what would the RR of temperature will depict?
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Dear Dr.Hasan Bin Sohail: Heatwaves lead to direct effect like hyperthermia and can be avoided by cold water locally or systemically(drinking).while the indirect effect on respiratory system (air passages)and can be avoieded by ventilations.
Generally vit.C and cold drinking important aid to stop heatwaves.Thanks
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I am using a distributed linear model (DLNM package in R) to study the effects of temperature lags on cardiovascular disease admissions.
So i did as following:
#Creating the cross basis: cb.temp <- crossbasis(workdata$templg0, lag=14, argvar=list(fun="lin"), arglag=list(fun="strata",breaks=3)) #Running the GLM model using natural splines modelA <- glm(cvd~ cb.temp+ ns(trend, 5*16)+holiday+influ_cat3+rhlg0+rhd1d3+bplg0+bpd1d3+catpol4lg0+pm25lg0+pm10lg0+no2lg0+luuo3h8lg0+timestr, data=workdata, family=poisson(link="log"), na=na.omit)
ns function has been used to define normal splines for trend variable ( to account for seasonality)
#prediction using crosspred: predglm<-crosspred(cb.temp, modelA, model.link="log", at = -25:8.5, bylag = 1, cumul= TRUE)
Since I am taking temperature as a linear term, so all the temperature range was included i.e. "at= -25:8.5"
#Using prediction to plot the graph: plot(predglm, "slices", var= -1, ci="bars", type="p", col=2, pch=19, ci.level=0.95, main="Lag-response a 1-unit increase above threshold (95CI)")
I used var= -1 because as I am looking for the winter season so I assumed this value will predict each 1 degree less than 0-degree Celsius (as reference temperature is by default = 0).
Please find the graphs (attached).
# to check RR predglm$allRRfit["-1"]
It gives me 1.00. Does this mean that there is no cumulative risk for 14 days lag?
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Hi Hasan,
Was there a particular reason you specified your temperature effect as a linear one, i.e. " argvar=list(fun="lin")"? Usually investigators would attempt to explore the non-linear relationship in the DLNM framework by specifying a natural cubic spline (see the references provided by Anwar above). I think how you specified the postulated relationship could have influenced your results. Perhaps you can explore the non-linear relationship instead?
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Hi everyone,
I am conducting a study for association of cold season temperature with hospital admissions. I want that for a decreasing temperature and hospital admission if
RR > 1 it means less risk
RR < 1 means more risk...
Does RR works in reverse for decreasing temperature.
Let' say we have RR 0.87 for a GLM model of cold season temperature with total hospital admission.
Can we say that " with each 1 degree celsius decrease in temperature there is an increasing risk of 0.87 times? How does it workds? Can someone please explain about it more?
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This is an alternative calculation. You can put the value and check. For example, for one unit decrease in x is associated with exp(-2.5-0.14*1) / exp(-2.5-0.14*2) = 1.15 times risk of hospital admission on average.
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Hi,
As the research field is really competitive, so what are the skills recommended for a Ph.D. student to learn while doing a Ph.D.? For example, I am doing a Ph.D. in environmental health epidemiology. What sort of skills should I learn during my Ph.D. so I don't have to struggle for a job after completion of a Ph.D.?
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1. Clear and effective oral and written communications skills focused on translating science into policy and programming-relevant insights. 2. Management skills (people, projects, finances, deliverables) - without these you'll find it hard to secure the funding to continue research. 3. Humility - build on what you know, but accept that there is so much that you don't know. 4. Dedication to the cause of rigorous and honest science in whatever kind of research job or career you pursue after graduation. 5. Commitment to mentoring peers and the subsequent generation - you know a lot that few others do so share it.
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Hi,
I am checking the effect of temperature on kidney disease hospital admissions with NO2(an air pollutant). In other words, how the effect of daily temperature on Kidney disease admissions modifies with changing levels of NO2 in air.
I got the significant result with as follows:
Estimate Std. Error z value Pr(>|z|)
templg0:no2lg0 -0.0004774 0.0001964 -2.431 0.015068
if I interpret it as:
An increase in level of No2 is significantly associated with a decrease in the effect of temperature on respiratory admissions. 
OR
The effect of temperature on hospital admissions decreases as NO2 concentration increases.  
Is that the right interpretation or any changes required. Please give your suggestions.
Best,
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Would you like to cite the variables of your study more clearly? Are there two or three variables? In the case of quantitative variables, it could more simply be a problem of correlation between two variables or between two variables taking into account a third one.
Otherwise, the types of interaction encountered in medical
research may be a multiplicative interaction
or an additive interaction.
Multiplicative interaction is measured by relative risk or
odds ratio. The observed effect may be a multiplicative
synergy or a multiplicative antagonism.
Additive interaction is measured by the difference in risk.
the observed effect may be additive synergy or additive antagonism
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Social environments are a well known determinant of health, as stated in the Ottawa Declaration on Health Promotion of 1986 and confirmed in the Sundvall Statement on Supportive Environments for Health in 1991.
Still it seems they are largely ignored in Environmental Epidemiology - exception made for work environments and occupational health.
Why do you consider that is?
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I would imagine that is because social environments have been primarily explored using qualitative methods, and that sort of evidence is still not palatable in the science field.
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I am running a GAM for temperature and Cardio admissions. After running the script i am getting the summary output as :
My script is
ibrary(mgcv)
> model1<- gam(cvd ~ s(templg0), family=poisson)
> summary(model1)
Family: poisson
Link function: log
Output=
Formula:
cvd ~ s(templg0)
Parametric coefficients:
Estimate Std. Error z value Pr(>|z|)
(Intercept) 3.195669 0.004877 655.2 <2e-16 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
Approximate significance of smooth terms:
edf Ref.df Chi.sq p-value
s(templg0) 3.422 4.295 57.23 2.93e-11 ***
---
Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
R-sq.(adj) = 0.0152 Deviance explained = 1.68%
UBRE = 1.016 Scale est. = 1 n = 1722
I am not able to understand what these whole bunch of things mean. Can someone please help me to understand what these parametric coefficients and other things in summary of GAM means? I have tried searching online a lot but found no help.
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I would just add two more comments to Jochen's answer:
1. You can run some diagnostics using gam.check(model1) and also plot the model with plot(model1). The latter will give you a visual that may help you interpret the relationship between temp and cvd. However, I notice that the deviance explained is 1.68% (see the second to last line in the summary output); since this is so low, the relationship between these two variables may be very weak, or there may be some other issues with the model (the diagnostics can give insights here).
2. You ask "what these parametric coefficients ... mean?" I will just reiterate that GAMs are different from GLMs in that there are no linear coefficients (betas) to interpret.
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Hi all,
As many of you, we get involved all the time with issues of sample size calculation. However, besides the use of some software, it is difficult to find a good source of guidance on this critical topic. Are you aware of any good books on this in the literature? Maybe a statistics or epidemiology book that has good chapter on this? Or a book entirely devoted to it?
Thanks!
Pablo
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please check Z library for more references
please check Z library for more refrences
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I am writing a book and in it, I mention the epidemiological triangle (sometimes called the public health or infectious disease triad). Where did the formulation come from? Who first described it? The references I have found are not informative but it is clearly a very old idea. I am aware that the idea as applied to animal health was formulated in 1974 by an eminent fisheries biologist, Stanislas F. Snieszko (1902 – 1984) to apply to fish diseases. However, I am sure that there must be earlier versions for human health. So far I have been unable to find them.
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Tee: In 1928, in the Cutter Lecture at Harvard, Wade Hampton Frost introduced the epidemic triad. The lecture was published in AJE in 1976.
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Must cover lifetime history, and all potential sources of exposure. The outcome to be studied is mammographic density.
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Exploring miRNA - environment relations. Is anyone interested by exploring associations between miRNA profiling in environmental epidemiology?
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Prof. Andrea Baccarelli (Harvard University) and Prof. Valentina Bollati (Milan University) study this matter.
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Is there any science behind the Air Quality Indexes besides cost benefit analysis? Usually when an index goes above, let's say 100 or 200, it is said it is harmful to general population. Any scientific reason behind that statement?
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Hi Pablo
This paper may help you to find a good answer to your question.
J.C Fensterstock et al., " The Development and Utilization of an Air Quality Index," Paper No. 69-73, presented at the 62nd Annual Meeting of the Air Pollution Control Administration, June 1969.
And another one. Please download attached file
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Asthma is a serious issue. Early warnings for asthmatic are very important. In many countries pollen count or its covering area, pollutants, dust are monitored, but there is a need for combined efforts to minimize the triggers.
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In the US there are air quality monitoring stations that produce data for an Air Quality Index Report having to do with particulate matter from: ground-level ozone, particle pollution (also known as particulate matter), carbon monoxide, sulfur dioxide, and nitrogen dioxide. When the air quality is poor the local news will release air quality warnings to the areas affected and their risk. 
Here are two links on that system:
Pollen is monitored in a few ways.  The National Allergy Bureau™ (NAB™) is the section of the AAAAI’s Aeroallergen Network responsible for reporting current pollen and mold spore levels.
Pollen counts tend to also be collected on a state by state or locality basis.  Here is an example from North Carolina: http://daq.state.nc.us/monitor/pollen/.  I am unsure if these groups report into the NAB or not.
Our local news stations are very good about publicizing this information when risks are high related to air quality for people with respiratory health issues.  Based on this information, many schools and child care providers cease outdoor play until the air quality measures are back in a safe zone.
Hope this helps.
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In the dose–response assessment step of risk assessment process, for estimating the dose–response, either an upper bound estimate or a maximum likelihood estimate (MLE) is derived; What is the difference between them? Which of them can be used with small numbers of data points? 
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Both are distinct with regard to their probability of likelyhood: as its name indicates, an "upper bound" estimate (UBE) is a "higher" value that is still consider reasonable with regard to its probability of occuring (e.g. 90 or 95th percentile value), whereas a most likelyhood estimate is the most probable overall, thus not the most probable "high" value like the UBE. With limited number of data, the MLE is a safer bet as to its representativeness of the available data, since upper bound values are often more uncertain when considering the tails of a probabilistic distributions of values; often, you need more data to be able to determine a likely robust UBE in any given distribution. However, from a risk assessment perspective, UBE are considered more conservative, therefore they may be chosen even if the may be more uncertain. Thus, your choice will depend of your objective: being more "safe" or being more "likely representative". 
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Methodology question: I am trying to figure out how to measure the degree to which a risk-related problem has become a public issue. The metric needs to be easily analyzed, accessible, quantitative, and stable over at least five years (from 2015 to 2020) and have high face validity. The measurement should be robust – it does not have to be particularly refined or capable of resolving small differences.
The application for this metric is that I am developing a project that has to do with factors (such as Peter Sandeman’s “outrage”) that determine which risk-related (environmental, health, sustainability) issues become public issues over time. I need a way to measure outcomes and compare them against predictions.
Social media is the most obvious approach. One metric would be Google hits, which is convenient, free, and cumulative, and which almost certainly will be around in five years in roughly the present form without too much bias from algorithm changes introduced over the period. On the other hand, I am concerned about Twitter because I’m not sure it will be as stable a platform over the time period and I’m not sure how much people tweet about issues as opposed to people and events. Newspaper inches in a journal of record (such as the New York Times), which used to be an old standby, might be completely obsolete by 2020.
I would be grateful for practical ideas.
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We once contemplated a study of the salience of public health issues (in our case stress related) that were loaded up and viewed on u-tube. This can be monitored if you have a good tech person. Another metric to think about Tee.
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Any tips on the best way to get sub-meter GPS coordinates while on the ground in Bolivia?
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Thanks. Your tip for establishing a base station and post-processing is a good one. I'll do that.
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Writing a book and one chapter is on how managing sustainability seems to be turning into a profession, with full-time managers doing this in business. What do professionals in sustainability need to know? Is there a distinct science underlying the field? If so, what does it involve? Are environmental sciences and studies programs providing adequate grounding in this science?
Please concentrate on the questions, not the definition of sustainability. There are lots of different definitions of sustainability (my book will offer another one), but for the purpose of this discussion, please assume that "sustainability" means doing business and managing enterprises in a way that works toward the goal that there is minimum impact on the environment, good prospects for the future, no degradation that would compromise the future, and that protects health and a decent life.
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for an insightful framing of the scientific questions, look at The Natural Step's "system conditions" for sustainability. The Natural Step seems to be somewhat out of fashion among Americans working in this area, but the framework is immensely valuable conceptually.
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Recently EPA revoked the PM10 annual standard. California has not done so and actually they have a very strict standard. Many studies show long term effects of PM10 (usually when PM2.5 measurements) are not available. Chile wants has revoked it but I feel is not a wise decision. Any comments?
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The most obvious study on improvement is: "Effect of air-pollution control on death rates in Dublin, Ireland: an intervention study" by Luke Clancy, Pat Goodman, Hamish Sinclair, Douglas W Dockery, Lancet 2002; 360: 1210–14.
Whether risk is associated with chemical or physical characteristics is a good question and it seems that jury is still out.
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I am writing a proposal to conduct a fundamental research on housing and health in a country without the specified policy/guidelines. Can anybody help me? Many thanks.
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How far have you gone and what angle are you aiming at. A variety of studies have been carried out on this topic. I don't understand what you mean by specified policy/ guidelines. Is it that your country do not regulate minimum standard for housing because these are the fundamentals. Several aspects of housing relate to health like mental health can be associated to housing density, design, environment etc; domestic accidents and housing design; the sick building syndrome is another aspect. There are several ways to look at it. Please visit the world Health Organization (WHO) site. My Masters thesis is titled: An assessment of the impact of housing quality on health. I actually had to compare two different housing locations one with standard housing and the other with substandard housing relating it to common ailments like malaria. I correlated the cost of health with cost of housing using environmental valuation methods.So please be more explicit may be I can be of help. cheers!
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The scientific literature of environmental and occupational health is old and during its long history has covered most models of scientific investigation, the problems they present, and the types of papers that communicate the work. It is also an illuminating case study for the evolution of the literature of so-called ,,Grenzgebiete", an old German term for scientific disciplines that cross disciplinary boundaries.
Our journal happens to be very old - it started in 1919 - and my colleagues and I have been interested in its history and how it shaped the field particularly in the early years.
We have arranged for a collection of articles on the literature of environmental and occupational health to be made available for free to our colleagues, especially for the benefit of new investigators and for teachers to make available to their students.
Starting in 2005, the journal ran a series of editorials by myself on the structure of the literature of our field, and a series of historical essays by our Deputy Editor, Derek Smith (University of Newcastle, Australia). We now want to make those articles available to readers who missed them when they first came out.
At our request, the publisher of our journal (Taylor & Francis) has pulled together 11 of the articles into a "special virtual issue" devoted to the literature of environmental and occupational health and has made them available at no cost on the internet for 90 days. (This is not a promotion for the journal.)
Tee L. Guidotti, MD, MPH, DABT
Editor
Archives of Environmental and Occupational Health
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As a new user of RG I'm very interested in this conversation. I noticed that RG is somehow "different" than other professional social media and I really appreciated the "open discussion" philosophy. I agree that an "open bulletin" space could generate some interesting brainstorming and possible collaborations. Unfortunately nowadays with tigher project budgets traveling to more than one conference a year is increasingly more difficult. Virtual venues could be the answer.
Thanks Dr. Guidotti for the interested EOH articles uploaded.
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I am dealing with a problem about which I found no available literature: the comparison between results from observational epidemiological studies (e.g. excess risk of a pathology in a contaminated area) and modelled risk estimated through chemical fate-transport and dose-response toxicological models (e.g. excess lifetime cancer risk = 10^-5).
Suppose we have a model that predicts a certain excess cancer risk around an industrial plant and we have data from an observational cohort study on residents in the area. How to compare them?
I think it is generally not recommendable to directly compare risk models and observed data, at least until exposure duration, intensity, toxicological pathways, health endpoint considered etc. are really comparable.
Does anyone know any publication about this issue?
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Because of the uncertainty inherent in the current practice of risk assessment (NAS and U.S. EPA paradigm), and the limited nature of epidemiological studies (limited in the number of people sampled/responding), it is often the case that the two are not directly comparable. For example, risk assessment may identify an unacceptable cancer risk in an exposed population after a hypothetical chemical release. Such risk assessments typically use default/generic exposure parameters and U.S. EPA defined toxicity values, which may include an aggregate of uncertainty factors that range from 10 to 1,000,000. The result of risk characterization might be a cancer risk of 5E-05 (5 times the acceptable target risk of one-in-a-million or 1E-05). In contrast, a large epidemiological study of the hypothetically exposed population is unlikely to sample (get meaningful responses from) more than 10,000 persons, and consequently does not have sufficient power to validate the result of the risk characterization. In such cases, the risk characterization should be considered a tool for evaluating the potential health risk to the population with a clear understanding of the uncertainty inherent in its calculation. Where epidemiology can demonstrate an increase in the observed frequency of disease or effect AND risk assessment demonstrates increased risk of that disease or effect, is suggestive of a causal linkage.
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There is a significant number of software available to model particulate matter dispersion at regional and intraurban scale to map its concentration to analyse its health effect. However, all of them are too costly to be afforded by an individual researcher. Therefore, it is an appeal addressed to all researchers/ scholars involved in air pollution modelling.
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Hysplit model it's free and requires internet
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Dear Tony, The hydroxyapatite which comprises to be the principle component of bone and which has biologically evolved to be flexible by nature turns to fluorapatite which is brittle and prone to bending exposure to excessive fluoride ove a period of time.
Fluoride also has a differential affect on our skeletal system. It increases the bone density in axial skeletal system like skull and spine but reduces the bone strength of appendicular skelatal system like hands uptill shoulder blades and legs uptil the pelvic gurdles. Hence vertebra fractures is aided by presence of fluoride but hads and legs become brittle in the presence of excess fluoride!
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What are the parameters that can influence the dose of fluoride in drinking water?
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Dear Tony, You can use a whatman filter paper to get rid of silt and other visible impurities. If that does not help then use a .22 micron filter paper for filtration using a syringe filter. I hope you are using Fluoride ion selective electrode for your analysis because that is faster and more accurate than even ion chromatograph, though IC is good enough if you are doing a comprehensive ion analysis of anions. Phosphate ion is know to have an interference in fluoirde ion detection.
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Thanks for reply
i read in essential of geology medical a chapter dealing fluoride so the concentration of fluoride depend of the geology nature of this region for ex a region with a high concentration of calcuim you will be assist with a low concentraion of fluoride in drinking water ,in granite rock