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Thanks to "In Vitro Culture of Epicardial Cells From Mouse Embryonic Heart", I have cultured primary epicardial cells, but after continuing to culture and passage, I found that the proliferation rate of the cells was slow. Does the cell have a requirement for growth density, or is it due to other reasons? Has anyone encountered this problem?
Thanks
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hello you can use this article
Mahin Homayoun Cibi, D.M., Hausenloy, D.J., Singh, M.K. In Vitro Culture of Epicardial Cells From Mouse Embryonic Heart. J. Vis.
Exp. (110), e53993, doi:10.3791/53993 (2016).
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During embryonic life the Pre Sertoli cells usually present a very variable shape of nuclei. I want to know weather the mitosis phase of spermatogenesis initiates at the time of puberty, or in the prepubertal period or in the embryonic life itself.
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Embryonic Development (Around 9th week of gestation) - Primordial germ cells migrate to the developing gonads, which in males will become the testes. These early germ cells are prespermatogonia.
Fetal and Prepubertal Period: Prespermatogonia differentiate into spermatogonia and undergo mitotic divisions. This mitotic activity starts during fetal development and continues through infancy, childhood, and the prepubertal period
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I am planning a point mutation in adult fibroblasts followed by reprogramming into iPSCs. I realised that the proliferation potential of adult fibroblasts is limited. Because of that, they go into senescence before I mutate them and do further reprogramming. In that case, are murine embryonic fibroblasts better than adult fibroblasts?
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You might want to re-read both your question and my answer. "...younger fibroblasts should have a better potential..."
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I am currently trying to make concentrated samples with a hundred frog embryos to make western blots.
Everything is fine during protein extraction. However, when I add the laemmi buffer, I begin to have aggregates that form. Once heated, my samples turn into blue chewing gum impossible to resurface.
Has this ever happened to anyone?
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Never worked with that kind of samples but when working with bacteria, the sample after heating with laemli buffer gets slimy because of the DNA in the sample. This problem is avoided when DNAseI is used during the protein extraction step (we use 5ug/ml DNAseI final concentration).
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We want to delete some genes and study their effects on developmental angiogenesis. However, intraperitoneal injection of tamoxifen at a dosage of 50 ug/g causes mass non-specific embryonic deaths at E12.5/13.5.
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Hello Ramón. Sure, I will try that option also.
Thank you.
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We are exploring possibilities to adapt our stereo microscope due to the high cost of fluorescence stereomicroscopes.
I recently came across this product (https://nightsea.com/products/stereomicroscope-fluorescence-adapter/). However, I've been unable to find any independent reviews or images taken with this particular adaptation that are not provided by the company itself.
In our research, we inject mutations fused to fluorescence proteins such as RFP and GFP in zebrafish embryo. It would greatly assist us in our work to be able to sort embryos based on their expression levels and capture full-body images of larvae under fluorescence. Has anyone attempted to use this adapter and could provide insight on its effectiveness?
Anyone can tell me if it's really worth it?
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Hello!
I’m using it for my research frequently. I’m studying fluorescence in coral-dwelling gall crabs that are below 1 cm in size. I think it is a great system that gives you the freedom to try different excitation and filter settings. I had two custom made little metal stands built to adjust light positioning but you can do this in every little workshop dyi. I was able to capture fluorescent images of my specimen that were then used to determine the fluorescent area on my crabs in ImageJ (as one possible application). Let me know if you have further questions about the system!
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I have found research units in the States and Australia, but I cannot find such centers in Europe. Maybe you've ordered an MAE test in some European lab?
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Hi, Embryotools in Barcelona is a commercial laboratory performing MEA. https://embryotools.com/
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Could you developmental biologists help me? When injecting cancer cells into the perivitelline space of zebrafish embryo (48 hpf) and growing them 3 days (+34 degrees), what structure/location of the adult fish is that location most resembling for?
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Thanks a lot Aidas!
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I am trying to isolate clean nuclei in mouse embryonic fibroblasts but have been unsuccessful. The purpose is to do nuclei stiffness measures on the sample. I have so far used Sigma kit (link below) but I don't seem to get clean nuclei. Would anyone have tips from similar experience? Thanks!
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Hello everyone! I am trying to find a protocol to isolate microglia from mouse embryos. (the mouse model I use produces homozygous lethal pups) All of the protocols I have read are for adult mouse brains. Does anyone know or have a protocol for younger mice?
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Hello! I think I can help you as I needed to stablish a microglia isolation protocol in my lab some months ago. From what I read in the literature there are three main ways to do it: by column separation with beads (like with Iba1 antibodies), column separation by density or the way I did it: by culturing a mixed glia culture and then separate by tapping or shaking.
In brief I proceed with this protocol:
- I use P0-P1 pups (but i guess even with E18-20 pups should be the same, you just proceed with the C section and take the embryos).
- I decapitate the pup/embryo and spray ethanol on the head.
- under the binocular microscope I cut the skin and open the skull. I remove the brain and place it in a petri dish with HBSS or cell culture medium.
- I take away the meninges very carefully with tweezers (very important step to avoid contamination of circulating macrophages).
- Here in my case I isolate the hippocampus as I am interested in hippocampal microglia but If you want more quantity I would go for the cortex as well.
- I place all the dissected hippocampus in a falcon tube and I mechanically dissociate the tissue by pipetting up and down around 30 times (some protocols use some enzymes to dissociate but I do not do it and have nice results).
- I filter the solution with a 33um filter to eliminate debris and big chunks of tissue.
- I add as medium as necessary and I plate the cells in poly-D-lysine coated P75 flasks with a density of 2 pups per flask. (4 hippocampi per flask). I use the medium in which only glia can grow: DMEM, 10% Horse Serum, 1% Pen/strep. The low density is very important as will allow microglia to really form a layer on top of astrocytes.
- One day after plating I change all the medium. You should observe cells adhered to the surface that should only be microglia and astrocytes who survived.
- For 10 to 15 days I let the cultures grow changing the medium every 2-3 days but only 50% of the medium (this step is essential as microglia need factors released by astrocytes to proliferate).
- When confluency is reached and I also observe a layer of microglia on top of astrocytes I proceed with microglia separation: I shake the flasks for 2h 100rpm (ensure 37ºC and 5% CO2 conditions or microglia will die).
- I take away the supernatant, centrifuge and plate in coated 24-well plates at a density of 100 000 cells/well. After 24h you see microglia only in the wells with nice morphology. VERY IMPORTANT HERE: after centrifugation keep the medium of the mixed glia culture and use it to culture microglia as they need conditioned medium from astrocytes to survive.
I hope this helps :)
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We work on cattle embryo development we obaserved divisions in most embryos but fail to develop into blastocyst
Very few very are of excellent grade
Other apper to be degrading
And also seen some cellines in culture
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Dear Sandeep
I am from a human IVF background, and the culture seems to be contaminated; it could be culture media contamination or process-mediated contamination.
Kindly check your media and dishes, and other disposables and try to start the batch with fresh media and disposables. It should resolve the problem of the arrest.
If the strategy is not working out, you may have to look into the stimulation protocols and media quality assurance.
Regards,
Sanketh Dhumal Satya
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Hello!
I'm a M.S. student at the University of North Carolina at Charlotte studying fiddler crabs and their embryos/larvae. We've been preserving our samples using RNAlater throughout the summer and I'm now extracting them. I've determined that the RNAqueous Micro Kit is the best one for us to use, and I'm using a NanoDrop for quantification.
I did three extractions from the same clutch, each with 50 larvae. My nanodrop concentrations were as follows: 146.7 ng/uL, 154.4 ng/uL, and 126.5 ng/uL. My 260/280 for each was 1.99, 1.96, 1.98, which from my understanding is good. However, my 260/230 were -1.04, -1.74, -1.12.
I have two questions:
1. Are these RNA concentrations high enough to be sent off for RNA sequencing? I'm new to the world of RNA sequencing so any advice is appreciated.
2. What would cause my 260/230 values to be negative? My understanding is that they should be close to 2.
Thank you!
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  1. It is generally recommended to have RNA concentrations of at least 100 ng/uL for RNA sequencing. The RNA concentrations you have measured are within this range, so it is possible to proceed with RNA sequencing using these samples. However, it is always a good idea to check with the RNA sequencing facility or service provider to confirm their specific requirements and to ensure that the RNA samples meet their minimum concentration and quality standards.
  2. The 260/230 ratio is a measure of the purity of the RNA sample. A ratio close to 2 is generally considered good, while values lower than 1.8 may indicate the presence of contaminants such as proteins, phenol, or other organic compounds that absorb at 230 nm. Negative values for the 260/230 ratio may indicate that the sample has a high concentration of contaminants or that the measurements are inaccurate. It is possible that the negative values you are seeing are due to errors in the measurement or problems with the spectrophotometer. You may want to check the accuracy of your instrument and consider repeating the measurements to confirm the results. If the negative values persist, it is recommended to further purify the RNA samples to remove contaminants and improve the purity of the RNA.
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Hello, fellow researchers! I am trying to develop a project to track the growth and development of embryonic and larval killifish (F. grandis and F. heteroclitus) in varying environmental conditions. Confocal or fluorescent microscopy are methods I am thinking of using, but I am unfamiliar with either of these techniques. I am hoping someone with more experience could help give me the pros/cons of both or provide resources to previous research using either technique so I can familiarize myself with what is possible and the methodology. Thank you for any help you can provide!
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I have no nearby mouse facility and cannot bring live mice to my research facility. I therefore have to transport either the euthanized pregnant mouse or the mouse embryos (staged E11.5-E14.5) for 1 hour before even starting the dissection. The embryos are used for explant culture of inner organs, so I want to keep the cells alive.
Does anyone have experience with a good method? I'm considering:
1) Transporting the intact (euthanized) pregnant mouse on wet ice
2) Dissecting out the uterus and transporting it in a tube of PBS OR culture medium on wet ice
3) Dissecting out the embryos and transporting them in a tube of PBS OR culture medium on wet ice
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For live embryo to bring to your lab you can used hypothermic preservation media having tissue culture medium 199 supplemented with 50% fetal bovine serum and 25 mM HEPES. We have used this media for bovine embryo and even at 4 degree temprature the viability rate of embryo was 100% for 24 hours and 48 hours, for refrence you can referre to 1-s2.0-S0093691X2030265X-main (1).pdf as well as the origional protocole publish is scientific reperots (Scopus - Document details - A simple medium enables bovine embryos to be held for seven days at 4°C).
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Hi there,
I need to validate a series of reference genes (i.e. housekeeping genes) for my qPCR assay and I need to construct a standard curve for each primer pair to check for efficiency. I am using range of snail embryo tissue samples, as well as a snail adult tissue sample.
Due to the limited quantity of RNA from the embryos, I would prefer to use the adult tissue (of high RNA yield) to conduct the standard curves. However, I am planning to use both embryo and adult tissue samples for validating my primers, but it's likely the adult tissue samples will be excluded from the comparison of expression data.
Thus, my question is: would it be acceptable to use cDNA from the adult tissue to examine primer efficiency (e.g. constructing standard curves) as long as the sample is tested (and included in primer validation experiments), but not used in the final analysis?
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My preferred material for doing this is plasmid DNA. There are several suppliers (I use GenScript who can synthesise your target sequences and clone them into a plasmid, which they supply to you as DNA. Putting several different target sequences into the same plasmid is no problem and doesn't cost much more. You can then make a dilution series of the plasmid for you dilution series, and you can calculate the exact number of plasmid copies from the DNA concentration and the molecular weight of the plasmid.
The plasmid will cost you several hundred Euros, but you only need one and you'll have enough to last you forever. Note, however, that the concentrated plasmid is very 'hot' and is almost as good a contamination source as a PCR product. I do my first dilutions in a non-PCR laboratory and only bring it into the sample extraction lab when it's down to about 107 copies/µl.
Regarding John's suggestion of using PCR products; I have reservations as my experience with this approach has not been good. I think this was due to primer-dimer. Once formed, primer dimers amplify extremely efficiently and they can outcompete the authentic reaction. But that's just my impression. Others may have better experiences.
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My project involves RT-qPCR analysis on preimplantation embryos (2-cell). However, I need to store the embryos before conducting the PCR analysis. The storage duration is up to 3 months. Please help me to find the best method to store the embryos. Thank you.
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we just store t he embryos in the smallest volume of media at minus 80 C . It works good. We also remove the zonae - there are cumulus cells and sperm trapped in there
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Can we differentiate ipsc grown on MEF ( mouse embryonic fibroblast) to cardiomyocytes on MEF itself?
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for iPSCs grown on MEF most of the labs use EB formation / hanging drop method- https://www.ahajournals.org/doi/10.1161/circulationaha.109.868885#d3e287
doi:10.1093/eurheartj/ehs349
Also pls have a look here for more detailed comparisons of differentiation protocols-
MEFs in general do not give very reproducible results. If you really want to use MEFs then you could also think of trying MEF conditioned medium- https://www.nature.com/articles/s41598-018-24074-y#Sec10
good luck
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I wanna inject drug into chicken embryo that is hatching.
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Hi
You can use an inverted microscope integrated with a micromanipulator to inject any micro quantity things into the embryo.
Narashige, RI and Eppendorf are the few commonly used micromanipulators.
Regards,
Sanketh Dhumal Satya
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I work on isolation of extracellular vesicles from mouse embryonic fibroblast grown into classical plates but I would like to increase the yield of the isolated extracellular vesicles, si I was wondering if it is possible by trying other cell culturing methods
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Hello!
Which medium do you use to make your conditioned medium? and for how long do you incubate your cells in it?
I don't know if it can help, but try also taking a look at this paper:
I think the results might vary depending on the isolation method you are using.
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Hello, all! I'm performing an experiment in which I'm doing a CoIP in the presence or absence of RNase to see if a protein-protein interaction is dependent on RNA. I am trying to identify a protein pair that is known to interact in an RNA-dependent manner, particularly in mouse embryonic stem cells (mESCs). I was thinking of trying to identify some proteins involved in translation initiation or spliceosome assembly/function, but am unfamiliar with the biology of these complexes.
Any and all help is greatly appreciated!
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In case anyone is curious about this question, I've found that the U1 snRNP complex components U1A and U1C interact in an RNA dependent manner and give a great Western blot signal. I'd recommend them as a control for RNAse degradation.
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I want to follow the dynamics of expression of a gene over time (different days during embryonic development) in a specific tissue as well as compare gene expression over time to 2 other tissues. Can I compare dCt values of my gene of interest to the geometric mean of the same two reference gene (and not ddCt)? Can you help me find a reference of this type of analysis I can quote?
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dCt values are already normalised to a reference (or references).
Raw Cq values are what the machine spits out. You then average the replicate wells (assuming you're running your qPCR reactions in triplicate) to get the Cq value for that sample for that gene. You do this for each of your genes, including your two references.
Then you can average the two reference Cq values to get a reference Cq: arithmetic mean is fine here, no need for geometric mean, because you're still in log space.
dCt is the difference between your GOI Cq and your reference Cq, per sample.
These are normalised expression values, so just...use these values.
If you're confident your references are valid for the conditions you're comparing (which is worth checking, because embryos are quite transcriptionally plastic), then dCts from one time point can be compared with the dCts from another.
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Hi, I pulled out mouse embryonic stem cells from -80 (where they have been for a week when I froze them down) and plated them on gelatin plates without feeders. The next day I observe these round structures around the colonies. Can anyone identify what they are? We know its not contamination and my ES media contains antibiotics and plasmocin and is freshly made. And these are not degenerating MEFs since I didn't use feeders in my ell culture.
Thanks in advance for your suggestions!
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Hi everybody,
Thank you for suggestions. My cells survived after a day or two and looking better.. so I think the likely explanation is that these were some sort of stress granules formed after freezing and thawing from liq N2.
Thanks again!!
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Peace be upon you all,
I want to know which cell in the human body has the most identical genetic sequence to the cells of that person in embryonic life, with the least mutations.
Can it be the neural cells?
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According to Hereditics, it should be the germ cells. Or else, heredity will not be stable anymore.
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Hello everyone, I would like to synchronise mouse embryonic stem cells in either G1 or G2/M phase in order to study the transcription of a set of genes of interest. I'm having some trouble finding a suitable protocol. Any recommendation is appreciated!
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Samantha Rustichelli The most popular method of cell cycle synchronization, as far as I know, is the traditional thymidine block. I tried it on mESCs and it worked in my case.
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I'm currently performing Agrobacterium transformations of immature wheat embryos for a CRISPR-Cas9 project. I do not have any colleagues with experience of working with wheat transformations and I have several questions to ask. Does anyone here have experience with the protocol and is willing to answer several questions about it?
The protocol is:
Ishida Y., Tsunashima M., Hiei Y., Komari T. (2015) Wheat (Triticum aestivum L.) Transformation Using Immature Embryos. In: Wang K. (eds) Agrobacterium Protocols. Methods in Molecular Biology, vol 1223. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-1695-5_15
Questions include:
  1. Why is the embryo axis removed after two days on co-cultivation media while in other species it is removed immediately upon embryo extraction? What would be the effect of removing it before inoculation?
  2. Why is the temperature of the first incubation different from the following incubations, and what would the effect be of doing all incubations at the same temperature?
  3. What is the effect of the centrifugation step, and how can I translate a 10 minute centrifugation at 20 000g to one at 17 000g?
  4. How does one combat agrobacterium overgrowth?
Thank you.
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Hello Tua,
I am using the same protocol for my wheat embryo transformations. Although I haven't succeeded so far, I can answer your questions 3 and 4.
3. Centrifugation step is performed to induce minor injuries to allow efficient Agrobacterium-mediated delivery of Ti plasmid. In your centrifuge, set a speed of 20000g and check how much it translates to RPM and use that speed for your experiments. For the centrifugation step, you can refer to Hayta et al 2019 Plant Methods article. They have successfully used 13000 rpm in their experiments.
4. To remove excess of Agrobacterium growth, I wash explants after infection with 3-4 rounds of autoclaved water with gentle shaking/inverting and then wash the explants with WLS-medium supplemented with Cefotaxime at 200mg/l conc for 20 minutes with gentle shaking. Dry the embryos on filter paper and transfer to WLS-Resting medium. You can also try the infection step on filter paper to avoid excess Agro growth.
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Hi there! I'm performing IHC experiments on PFA-fixed human day 5 embryos (blastocyst stage). After the staining steps, I perform washing in 0.1% Tween-20 in PBS. Although it is usually fine, sometimes embryos tend to attach to the bottom of the dish during washing. The dish we have for washing are not low-adhesion treated (24-well Falcon™ 353047 – Fisher Scientific (10048760)).
I wonder whether I could supplement the washing buffer (0.1% Tween-20 in PBS) with BSA in order to prevent sticking? Any suggestions also about the concentration of BSA to use? Would this change be innocuous for the rest of the protocol or may induce changes that require further optimization? e.g. antibody concentration.
Thank you!
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I saw sticky mouse early embryos when I washed them with PBS in 96-well plate (shouldn't be much different to the falcon dishes). I would suggest you check your Tween-20 stock. PBSTw 0.1% is a good condition so I don't think that would be a problem. Maybe borrow some fresh Tween-20 from other labs will solve your issue.
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Is it necessary to dechorionate the early stage zebrafish embryos (<10hpf) for immunostaining? If so, what would be the ideal method to dechorionate them? by treating with pronase or manual with forceps?
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Hi! I have a problem with the proper positioning of 4 dpf zebrafish (AB strain) for dorsal imaging under a stereoscopic microscope. After the treatment, some of them have yolk edema so it is not possible to place them perfectly straight, even in methylcellulose or other immobilizing media. Of course, they are already anesthetized with tricaine.
In this experiment, I plan to take dozen or more photos (length and angle measurements) therefore I need some wise solution to deal with it efficiently and quickly. Any tips?
I will appreciate any help!
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Hi,
Maybe you can try mount your fish in 1.2% low melting agarose? You can adjust your samples to get a proper position, and once the agarose solidifies, fish cannot move, and you can do your imaging with them. Hope this can be helpful!
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Hello guys!
I am working now with an eGFP female mouse and using her embryos, specifically the embryo's brain.
I want to know if there is any marker I can use in immunohistochemistry to label only maternal immune cells in contrast to neuroblast/neurons and glial cells?
Thanks for the attention!
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John Hardy Lockhart thank you for your answer! I am already using this methodology to obtain the contrast between maternal cells in the embryo's brain. But, sometimes there are pregnancies where the majority of embryos is eGFP. In that case, I was looking for a way to use the eGFP embryos through immunohistochemistry instead of wasting all this rich biological material. I appreciate your attention!
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Hello all,
I have attached the data I am using to this post.
I have two variables: alcohol concentration (0%, 1% and 2%), and qualitative grades I've given to embryo samples after doing ISH (1, 2, 3 and 4) with 4 having the highest gene expression.
I'm trying to statistically analyse between the concentrations. I thought that alcohol concentration was categorical and embryo grading was ordinal - is this correct? so then I carried out a Kruskal Wallis test which gave me this result in R:
"Kruskal-Wallis chi-squared = 24.614, df = 3, p-value = 1.859e-05"
the p-value seems very low- almost too low?
I then wanted to do a post hoc / pairwise analysis to analyse between 0%:1%, 0%:2% and 1%:2%. I'm unsure of which post hoc test to use.
any help would be appreciated!!
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On pregnancy day 18 we sacrificed one pregnant rat and we isolated the Hipothalami of the embryos (there were approximately 15 pups). All the Hypothalami were collected in one test tube. They were then further processed.
The isolated primary neurons were then seeded on a 6-well plate (3 Mio/well).
What is the N-number in this case?
Is it 1, since all the embryos derived from the same mother?
Or is it 6, since there are 6 wells?
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The n = 1 with 6 technical replicates because you processed all of the embryos into a single tube before plating. If you had processed each embryo and plated the resulting cells separately your 'n' would be 15.
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((This refers to a situation in which double-radical emergence!))
Do you think this is a genetic disorder or a unique trait?
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Dear Mohsen,
thanks for the explanatory information and photo. It is good that it is a wild plant. This makes it more interesting!
Ferula assa-feotida does not occur in Central Europe and I have no experience with it. We worked with the team for years on the monocarpic perennial Peucedanum arenarium from the same family (Apiaceae). We failed to breakdown the seed dormancy. So I can't report about morphological germination of this species.
I wish you good luck with the Ferula.
BS
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Is antibody produced against fowlpox virus vertically transferred via eggs and further inhibited viral propagation on non-SPF cells?
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It is well established that laying hens do excrete (specic) antibodies (IgY) in their eggs when exposed to immune stimulating agents. SPF animals will be no exception , as SPF only covers certain specified pathogens and Fowl fox might not be one of them.
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what are the opportunity of determination of embryo sex in the fertilized egg of chicken
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In the chicken and other birds, sex is determined by a ZZ:ZW sex chromosome system. ... While the genetic trigger for sex determination in birds remains unknown, some promising candidate genes have recently emerged. The Z-linked gene, DMRT1, supports the Z-dosage model of avian sex determination Rafea M. Khulel
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I am trying to stain stage 17 embryos using phalloidin without any success.
I am fixing the embryos in a 1:1 mixture of heptane/4% PFA after dechorionation in 50% bleach. I devitellinize by hand so I don't have to use methanol as it may interfere with the phalloidin staining. For the staining I use 1:500 phalloidin in PBST at room temperature.
So far I didn't have any success. None of the embryos are stained. I tried varying the Triton-X 100 concentration but this didn't seem to make any difference.
I also tried a heat fixation which seemed to improve the staining but destroyed the structures.
Does any one have a working protocol or any idea what I may have to change to get it working?
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Before staining with phalloidin fixed embryos for 30 min at room temperature in a 1:1 mix of heptane and 8% formaldehyde.
After fixation, hand-devitellinize embryos in PBS, block in 1% BSA/0.1% Triton in PBS for 30 min, incubate in 1 µgml−1 Alexa594–phalloidin for 30 min, wash three times for 15 min in PBS containing 0.1% Triton and analyse on the confocal microscope.
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Hi!
I have an idea to use a chicken embryo as a model for endothelial disfunction studies. Who has already worked with the vessels of the embryo. It looks so beautifull and easily accessible for the investigation, but I can't find the nethod of the fixation the vessels just from the eggs for the morphological study. Tell me if you have any ideas too
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An important topic worthy of attention and follow-up.
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I have 4 independent variables (types of enrichment, types of tanks, mating pairs, strain of zebrafish) (nominal scale) with 1 dependent variable (fecundity of zebrafish/embryos laid) (scale data). what type of statistical test should i use?
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I would use a mixed-factors analysis of variance if all your independent variables are nominal. If mating pair is your unit of variance (number of replicates = X number of mating pairs), I include mating pair as a covariate rather than a typical independent variable, since differences between matings would be a quality control issue rather than a specific hypothesis to test.
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We know that somatic embryo can be used as an artificial seeds, but encapsulation include many kind of material. I ask to researcher to give their experience for us.
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Take a look at this video link
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Dear all,
I'm looking for publicly available Esrrb immunoprecipitation-mass spectrometry (IP-MS) data performed in mouse embryonic stem cells grown in serum condition.
Would appreciate if someone can share with me the info of such publication / datasets
Thank you all
Regards,
Nadia
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The attached paper may help you.
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Many pieces of researches have shown that responding explant percentage, embryo number, plant regeneration and also response rapidity increase in TCL explants compared to larger size explant. Now, I ask all researchers to share their experiences and reasons.
Thanks
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Minimal plant tissue offers many advantages over big explants. In case of TCL, cells are directly in contact with the nutrients, and have maximum chances of organogenesis and somatic embryogenesis on optimized growth regulators.
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I'm working with mouse embryonic stem cells. I wonder if I can find a database listing all genes involved in the c-Src pathway?
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Nadia Cipta try STRING (https://string-db.org/) it gives you links to reported evidence either publication or actual wet lab experiments or just reported in the same documents. I like the visual presentation of networks and evidence. There are other databases but this is my suggestion to u.
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Hello, can someone help me? I am just random undergrad interested in oocytes and early embryos but I know almost nothing about their in vitro cultivation. What is the current state of the art of this topics? Where can I find what are the ingredients and what do they affect? Could you recommended me some reviews, articles, brochures, websites, anything about this topics?
Thank you very much!
Maria
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Hope you are interested in culture of mammalian oocytes/ovum in vitro. If yes, let me tell you that there are several culture medium available for oocyte in vitro for various purposes. For oocyte maturation, you can use M-199 (Sigma, HiMedia and several other companies), for fertilization (M-16, M--2 etc.) and embryo culture (several). All companies provides the ingredients of the culture medium and these media are provided both in powder form (to be reconstituted) as well as in liquide (ready to use) form with several options of buffering and alterations for in vitro culture such as Ca+2/Mg+ supplemented/free, etc. Actually you have to decide based on the source, stage and need of experiments and accordingly use the culture medium. Good luck
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I am a MS student at the University of North Carolina at Charlotte and I work with ovigerous fiddler crabs and the potential temperature stresses these crabs or their embryos may be exposed to in the field. An experiment has been set up to determine what temperatures these fiddler crabs are exposed to inside of their burrows while they allow incubation of their embryos.
Does anybody know if there is any correlation between the tide and the temperature fluctuations that fiddler crabs experience inside of burrows? especially while they are incubating eggs?
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Check out this attached paper - Tide-Induced Variations in Surface Temperature and Water Table Depth in the Intertidal Zone of a Sandy Beach. It discusses the influence of the tide on sand temperatures.
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Dear researchers, I need to know your insight/opinion on the most suitable lysis buffer to be used on mouse preimplantation embryo for preparation prior qPCR. In my case, I just need to preserve/isolate RNA only. In addition, how long can the embryo be keep after adding lysis buffer until it will be used for qPCR? Thank you in advance.
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Ke-Hui Cui Thank you for your insight. I will look forward into it.
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I'm looking to detect senescence in Zebrafish embryo and I need a robust control positive (and negative).
Kishi Shuji suggest BHP but exists a better control?
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Does it work
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How you select and prepare embryonated eggs for diagnosis the following diseases:a ,Turkey chlamydiosis .b _Laryngotracheitis of layers.
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Please ,the question clear explain briefly role embryonated eggs for diagnosis of infectious diseases with examples ,then attach the reference
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We are conducting 21 days reproductive toxicity test using zebrafish. This experiment requires embryo collection daily. We maintain the ZF in 50L aquarium capcity until they reach 16 weeks of age. For the experiment, we transfer the fish pairs from the main aquarium to experimental tanks (5 pairs/4L water/tank). The temperature, feeding, and light conditions are the same as in the main aquarium.
On the first day, ZF lay embryos in all the tanks. However, from day two, ZF stops laying embryos.
Is there any way to restore/maintain the ZF for embryo collection?
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We similarly have been unsuccessful breeding the same fish repeatedly. Even bred weekly, we see reductions in egg numbers across breedings. For that reason, we generally space group breedings apart by 2-3 weeks. You could certainly breed the same fish at the beginning and end of the 21 day period and have successful egg collections, but if you need frequent collections, you will likely need to use multiple breeding pairs in order to fill all of the necessary time points.
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Hi all, I am trying to stain the inner cell mass (ICM) of fixed human embryos with TUNEL to detect apoptosis (In Situ Cell Death Detection Kit, Fluorescein from Sigma-Aldrich) for confocal microscopy analysis. However, I only get to label trophectoderm (TE) cells. In my view, it seems that TUNEL cannot penetrate to the core of the embryo, and even after incubating embryos with 0.05 U/ul DNAse (positive control for apoptosis) only all TE cells are labeled but not ICM cells. Has anyone experienced similar problems before?
I perform fixation in 4% PFA/PBS for 20 min at RT, permeabilization in 0.5% Triton-X100/PBS for 30 min at RT, incubation with my primary and secondary antibodies overnight at 4ºC and 1h at RT, respectively; TUNEL incubation for 1h at 37ºC in humid conditions (9:1 TLM/TE) and DAPI staining for 15 min at RT. Several washing steps of 2 min in 0.1% PBST between markers.
Any kind of comment, suggestion or advice would be very much appreciated.
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Thank you very much for your answer and the insightful review Subhash C. Juneja When I treat embryos with DNAse, all TE cells but none ICM cells are TUNEL+. Don't you think this may be rather attributed to a lack of penetration of the TUNEL reagent into the ICM cells (embryo core)? ICM cells should be TUNEL+ too.
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As it is known, for bulls in semen production centers in many countries around the world, to be used in embryo production with the desired health criteria and health conditions for donor cows are almost the same. According to some researchers: “Health in a bull that produces thousands of doses of semen per year.It is understandable that the criteria are very strict. However, just for a donor cow that can produce 20-30 embryos per year.It is not right to ask for the same health criteria” What is your opinion on this argument?
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Artificial insemination and embryo transfer is increasing day by day all of the world. Especially to increase milk and meat production in near future, embryo transfer become much important solution for many countries. Health criteria and health conditions should checked very carefully and frequently for donors and recipent cows in the research center and embryo production farms, universyties. Because, Brucella, Tuberculosis, IBR, BVD, Leucosis, Bluetongue exc. diseases very dangerous for farm animals and humans (zoonotic). So in my opinion control systems of these diseases have to strict both semen and embryos to protect animals also humans in the country. Otherwise we can not control health system for animals, zoonotic diseases also we can loose huge number of farm animals in the country.
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Genetic Engineering, Crisper
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The CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) method, I think it is ethical for therapy and acquired immunity.
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Hi guys! I would like to know if someone could help me to solve a problem the following problem: After the parthenogenetic activation of oocytes, zygotes are degenerating after 72h of activation. I made some changes in the SOF environment, but there was no positive result. Who can help me, I appreciate it!!
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Leonardo, you can verify basic things like osmolarity and pH, if the gas mixture was changed recently, any expired reagent. If you use oil on your culture, this might also be a problem (we had problems with different lots of oil). During the years I experienced all kinds of problems that resulted in the embryos dying, from CO2 problems, expired reagents, external contamination with cleaning substances... If you can provide more information about any possible changes that occurred in your system, that might help to identify the problem.
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Hi all :)
I am trying to perform smFISH followed by immunostaining on drosophila testes but when I check how the staining looks I have no signal from the smFISH probes (while the antibody is fine). I tried to invert the 2 staining and perform IF first and smFISH after. This improved the smFISH but somehow worsen the IF.
In the past I have worked with Drosophila embryos and I never has any issue in performing smFISH followed by IF, could it be a tissue specific problem? Which approach would you suggest to try?
Thanks :)
(smFISH and IF alone work both perfectly fine on testes)
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It seems to me that trying different rounds of fixing (after the primary antibody) might help to stabilize the interactions therefore improving the quality of your experiment after incubation with secondary antibody.
On the other hand, using primary antibodies (nanobodies also) chemically labeled with fluorophores algo might help As you don’t need to use secondary antibodies, eliminating un cesar washing/incubation steps.
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Every now and then when I collect eggs, I notice on day two that some will be clumping together, which makes it hard to sort and separate them. When I look at them under the microscope it looks like little fibrous strings holding them together, and they really clump up. Sometimes all of the embryos in the dish will just end up in one pile that I have to pick apart one by one. The strings also glow under fluorescent light. Has anyone else had a similar problem? Does anyone know what this is?
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It sounds like you are seeing water mold (or possibly a fungus) growing in your dish. These are common organisms in any aquarium and will start to grow rapidly in an optimal condition like an embryo plate. When you collect embryos, rinse them well to remove any tank debris and make sure to remove any dead embryos as soon as possible as these are perfect substrates and food sources for molds. Then I would recommend either methylene blue or embryo bleaching.
A concentration of 0.1% methylene blue in your embryo medium will inhibit the growth of mold. How long you treat them with it is up to you. A quick dose of 15-20 minutes will knock back molds, but they may or may not come back. Or you can keep them in it longer, all the way until hatch if you want.
Your other option is embryo bleaching. For this, you use diluted household bleach (i.e., sodium hypochlorite) to sterilize the surface of the embryos. There are a few protocols out there, just google "zebrafish embryo bleaching" and you will find them easily. Basically, you will put the embryos in a sieve (we use a tea strainer or small square of mesh) and take them through a series of bleach dips and water rinses. It is important to note that this process will harden the chorion, making it difficult for the embryos to hatch. So make sure that the protocol you select includes a procedure that uses pronase to help with the hatching.
I hope that helps and good luck with your embryos.
- Melissa
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In my opinion, the embryoinic chambers show resemblance to different Orbitolinid genuses:
1. It has protoconch and deuteroconch and subembryonic chambers similar to Praeorbitolina sp. ( Schroeder, 1965), however in Praeorbitolina deuteroconch is not subdivided by partitions and subembryonic chambers positition are at different angles compared to attached image.
2. In Alpillina sp. (Foury, 1968, emended, Arnaud-Vanneau, 1980)
there are 3 subembryonic chambers but in the attached image only 2 are recognizable in my view.
3. In Neoiraqia sp. (Danilova, 1963), the protoconch and deuteroconch ( subdivided ) and periembryonic chambers are similar to the attached image, however shape of the chambers are different.
4. Despite different embryonic chambers compared to Neorbitolinopsis sp. (Schroeder, 1965), (except the divided deuteroconch) the tangential section and shape of chambers in the tangential section in the attached image are very similar to Neorbitolinopsis, though other Orbitolinids might have similar tangential sections.
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Dear Reza
Thanks for your answer.
As you can see in the attached article.
Mesorbitolina parva has an embryonic apparatus which is much more complex (with more than 2 subembryonic chambers and divided deuteroconch with more than 2 partitions) than the original image
I attached, which looks like to be a quite primitive Mesorbitolina species. If you take a look at the previous article I attached in response to Sanjay by Yazdimoghadam et al. You may agree with me that the embryonic apparatus quite resembles that of M. lotzei, but to cofirm that I expect more experts to write down their ideas.
I am very thankful for your response.
Take care
Hesam
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As it is known, many factors are effective in increasing the pregnancy success rates after embryo transfer to the recipients in cattle. However, can you share your ideas about other applications that will reduce stress and pain during the transfer, apart from epidural anesthesia? For example, how can the implantation chance of the embryo be increased?
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I think there are two factors that affect embryo implantation. The first is the quality of the embryo, the second is the availability of the endometrium. Embryo quality is largely composed of chromosomal errors and affects implantation. To prevent this, relatively young animals should be used and embryo evaluation should be done very well. The suitability of the uterine endometrium is the age of the recipients, hormonal status, thyroid disorders, autoimmune diseases and endometrial inflammations.
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I am having trouble processing whole E18.5 mouse embryos and I was wondering if anyone could provide any suggestions on how long I should be fixing the embryos in formalin and what the best processing protocol is? I have tried removing the limbs and making a slit in the back of the embryo to help reagents penetrate and I am currently processing for 2 hrs and 30 min with vacuum but some of the embryos seem like they are not fully processed. I have also tried 2 hrs and 45 min with vacuum but these embryos came out very shrunken and shriveled and the sections did not stain well. Any suggestions would be fantastic!
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You can try 24hr in NBF. Vacuum may be too harsh for soft tissue like embryo.
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I'm looking for some help regarding mounting for zebrafish embryos/larvae for live confocal imaging. It seems most protocols in the literature use low MP agarose; however, our lab does not have this. We can make up 3% methylcellulose. I'm struggling to find a sufficient protocol to describe how to conduct live imaging with zebrafish in methylcellulose so that the larvae (from 2-10 dpf) are positioned correctly/remain anesthetized/don't die.
Currently, we have been using silica gel to encase the larvae in water and Tricaine between two coverslips, but it seems that this method does not provide standardized positioning.
Any help/protocol for this would be much appreciated!
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1. Using an embryo loop or a small wooden stick [cold, 4 degree Celsius], place a small dab of 3% methylcellulose (see recipe below) in the center of the depression of a glass depression slide.  Don't just drop the methylcellulose on, push it down, otherwise it will float away.  If it does float away, then just push it back into the depression of the glass depression slide.
2. Dechorionate and/or anesthetize the embryos as necessary as listed in “How to use anesthetics on zebrafish.”
3. Place the embryo on top of the methylcellulose, and layer fish water on top to fill the depression.
4. Move the slide under the stereomicroscope and gently push the embryo into the methylcellulose with an embryo loop until it is secure.  Use the loop to position the embryo in the orientation that you want. Be careful to keep the embryo covered with water during your observations or it will dehydrate and die.
Recipe for Methylcellulose
1. For 3% methylcellulose it is equivalent to 3g methylcellulose in 100mls of fish water. 2. Rock overnight in a rocker until the solution is dissolved. 3. Split the solution into 50 ml tubes and freeze the solution until needed.
4. When the solution is needed, thaw for usage (use heat for time purposes to help methylcellulose go into solution).
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Hello Everyone,
I use tamoxifen inducible cre (cre/ERT2) system to knockout a gene at embryonic day (E11.5). For that I am injecting 1mg 4-hydroxytamoxifen intraperitonealy in 100ul corn oil at E8.5 and dissecting the pregnant female at E11.5 as I am doing some hematopoietic studies.
Most of the time I found 50-60 percent embryos are aborted.
I recently started working with the inducible Cre mice and does not have much expreience with tamoxifen. I look for many papers but I do not find much information injecting at E8.5.
Please share your thoughts and suggestions. I will be very grateful.
Thanks,
Surbhi
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Dear Surbhi
It is very interesting question!
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I need to transfect MEF with GFP tagged for mitochondria complex III
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For transient transfection, I believe electroporation gives good efficiency in MEF. Reagents like Lipofectamine may give you around 10-20 percent transfection. However, lentiviral transduction is a good option for generating stable cell lines.
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I want to calculate the E:S ratio of a dormant seed. After 24 h of imbibition, each seed was cut open along the longitudinal axis with a razor blade, and embryo length was measured.
Now I have to measure whole seed length or endosperm length. Please tell.
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U can use a light microscope or electron microscope for seed embryo measurement.
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Hi everyone,
so, we always had good working primary cortical neurons preps (embryonic) and no issue with culturing them to DIV10-14. However, the animal facility now moved to a different location and instead of being next door it's now a 10min cycle ride away. Interestingly the issue of sudden neuronal cell death at around DIV10 started around the same time. Has anyone experienced something similar before?
We also started adding AraC on DIV4 at 2uM (final conc.) to the cells as we experienced overgrowth of non-neuronal cells but according to the literature this is a well accepted concentration by the neurons. I leave it on until the next media change which happens 3days later.
I use the new B-27™ Plus Neuronal Culture System from ThermoFisher with 50% media change every 4days. Plating (4-5h) is done in DMEM, 10% FBS, P/S.
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I agree with Edda in NOT dissociating tissue that needs to be transported. If you can do dissection in your local building it will greatly help with survival.
Lot-testing your neural supplements is always something to check. NeuroCult SM1 from STEMCELL technologies undergoes testing to ensure lot-to-lot consistency in performance.
Thanks
Jason
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I'm currently reading a research on CRISPR/Cas9 application on human embryonic cells and really just wanted to know if sample sizes are required when doing research related to such, or if the size is adequate for the study. Sorry if its a dumb question, thanks for entertaining.
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You will find the answer to the question in the attached file.
Wish you luck
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Im quite new to R studio and I want to know what statistical test is best to use to compare percentages of time spent at same embryonic stage in 3 species . I know people have said use chi sqaured test but these domt work for percentages.
Thanks for advance for the help
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i still believe is chi square you will need to categorise it and cross tabulates it appropriately and it will give you a p value that u can interpret accordingly
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I want to synchronize mouse embryonic stem cells in G2/M phase in order to study transcription of a gene of interest during mitosis and throughout the cell cycle but I'm a having a hard time finding a protocol for this.
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I want to study the embryonic development until the blastocyst stage, but the laboratory we are collaborating with for the mice, proposed us to use CD1 mice embryos instead of C57BL/6 for their own technical reasons. Shall I use them or not
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Thank you for the advise!
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Hi all, I have one question regarding zebrafish embryos. After a specific treatment, I collected embryos 3 days post-fertilization. Due to the high mortality rate, I could collect 3 cohorts as being 10 embryos in each cohort. I will extract RNA and then conduct qPCR. In the related articles, I checked, saw that cohorts generally consist of 20-30 embryos but I have 10 for each cohort. Do you think does it affect gene expression patterns, especially significance values? I know that by extracting RNA from 10 embryos, I decrease the biological variability. However, I am not sure about its further outcomes. By the way, I have also 10 embryos in my untreated/control cohorts and convert the same amount of RNA into cDNA, surely. Any thoughts/comments are appreciated.
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i am only interested in the woman
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I have frozen sections of 4%PFA drop-fixed, 30% sucrose dehydrated fetal livers from E14.5 mouse embryos. I sectioned them both at 10 and 5 microns. When I performed the staining on the 10 micron sections the DAPI was extremely dense and therefore I went thinner on the next round. However in both attempts I could not detect any c-Kit signal despite confirming the antibody does work on whole embryo sections. I am using c-Kit eBioscience cat. 14-1171-82
My questions are:
1. Is it just a matter of hit or miss? To my understanding there is not a robust amount present in the fetal liver at any point in time so maybe it is just a matter of staining enough slides to catch some c-kit positive cells?
2. Is there something extra needed to be done as far as the tissue prep? Most protocols in the lit are very vague. The fetal liver is full of blood cells and maybe I should consider perfusing, but then is it possible I also end up flushing out my cells of interest (HSC)?
Thanks in advance!
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Hi Lissenya!
I'm currently trying to do something very similar and struggling with the same issue. Have you found a solution to your question?
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I've been doing whole mount in-situ hybridization with very small embryos (~E8.5) that are fairly translucent so they're often hard to see with the naked eye. The protocol involves many washing steps so I'm constantly transferring solutions to and from the microcentrifuge tubes that we put the embryos in. Even when I'm being cautious, use a dissecting scope, and use 10µl pipette tips I still end up losing at least one embryo each time I perform the procedure.
Does anyone have methods they use for easier detection of small embryos within microcentrifuge tubes at the bench top? Laser pointers, flash lights, you name it.
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I found a protocol which uses baskets for many of the washing steps that I think I'll try! https://www.nature.com/articles/nprot.2007.514
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Hi everyone
We need Fast Green to electroporate plasmid into mice embryos, therefore we simply need it to see some color in the liquid we are electroporating so that electroporation is more efficient.
I find it a little bit expensive and I've found a way cheaper powder version but I have no idea how much "liquid version" can I get from 10 grams:
Does anyone know how should I dissolve this powder to make Fast Green to electroporate mice embryos?
Thank you very much in advance
Bea
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**correction... it should be 0.10 mg per 1000 ul for a 0.01% solution
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Dear all,
I have harvested fibroblast cells from R26p-Fucci2 mouse embryos (mouse line as described in this paper: https://dev.biologists.org/content/140/1/237) and cultured them on plastic, hoping to obtain a batch of cells with fluorescence label indicative of their cell cycle state for further analysis. Before I harvested the fibroblasts and grew them up, I checked the endogenous fluorescence signals from the mouse embryos and I could clearly visualize them in the brain region, developing heart, lungs, etc. However, once I cultured them and passaged the fibroblast, the cells didn't seem to express the fluorescence markers anymore. I have also performed genotyping to confirm the presence of reporter genes in the mouse embryos.
The embryos were bred by crossing positive R26p-Fucci2 mice with WT C57 mice, and fluorescence signal were checked after the embryos were harvested from the mother. The embryos with fluorescence signals were processed as follows: First, the head and limbs of the embryos were removed. Then, the internal organs were removed by cutting the embryos open at the abdomen. All the internal organs including the kidneys, intestines, heart, etc were removed. The carcass of the embryos were then transferred to a new plate, and chopped to small pieces. The pieces were rinsed with 1x PBS and put in 1x TrypLE Express solution (approximately 5mL per embryo) in 4 degrees overnight. On the following day, excess TrypLE Express solution were removed where approximately 2 volumes of the solution were left with 1 volume of embryonic tissue. The mixture were incubated at 37 degrees for half and hour and the washed with 1x PBS afterwards. The cells were pelleted and cultured in DMEM (prepared following instruction from the manufacturer). Initially there were few fluorescence signal (around 10 cells out of 200 cells expressing reporters), but after passage, none expressed the reporter. Is there anything I've done wrong, or any procedures I've mistakenly performed that hindered the expression of the reporters?
Thanks for your time and help in advance.
Best regards,
Jordan
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I don't know where you got this protocol, but I would directly start culturing the cells (without overnight incubation) after Trypsin or something like that.
Actually, TrypLE seems to be bad for cells. I would directly trypsinze them (about 1-2 hrs) and confirm fluorescence upon obtaining the cell culture in the dish.
At least, it worked in my case, I don't know.
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I have been working on the anti-teratogenic activity of a plant extract towards ethanol induced duck embryos however, many studies use the 14 days incubation period and then remove the embryo for morphological analysis. In my case, I want the eggs to hatch and use Tona's degree of malformation scoring table. What would be the best time to inject the teratogen and the anti-teratogen? Is it Day 0 of incubation?
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Hi. Everyone.
I'm trying to Whole mount in situ hybridization.
In gastrula stage, cells were easily be torn even I didn't treat the pk solution.
And what is the best way to preserve the gastrula embryo cells during in situ hybridization?
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Thank you for your help.
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I'm trying to whole mount in situ hybridization in fish embryos.
I fixed fish embryos in 4% PFA in PBS for 2days.
And I found some sharp brown spots in embryo. I've never found that spots before.
Can anyone help me regarding this problem?
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Thank you for your answering.
I usually been sampled embryos from far field.
So I collect lots of eggs once in 4% PFA without dechorion treatment.
After then, I remove the chorion and fix it 4% PFA again for 12 hr.
Is it impossible way to WISH?
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I performed RT-PCR on embryonic tissues taken from E10.5, and performed whole mount in situ hybridization (WISH) on embryos from the same stage. When comparing the results from these two experiments side by side, i noticed that there are many discrepancies in expression patterns between these two methods. For example, WISH showed no expression of the gene in the heart, but I was able to detect significant bands in the same embryonic tissue by RT-PCR. Can anyone help me explain this difference?
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Dear Mohammed Asaad Alkhouli, I see your point. As we have known, All cells have genetic material as gDNA and non-functional parts of gDNA wrapped with histone proteins. Sometimes, a trace amount of mRNA (which does not translate to protein) or some part of DNA fragment may be detected by RT-PCR. RT-PCR is so sensitive technique and may have some signal for those.
You need to check your primer if they specifically designed to exons of your targets. it may produce a signal by using DNA as a template.
On the other side, You may have some problems introducing/get your specific mRNA probe to the whole tissue. Whole tissues have a tight connection, You need to break all connections of tissue and get a hole on the surface of cells to introduce your RNA probe. You also may need time to get a signal with some probes. They may express a little.
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I am thinking to investigate the roles of a specific gene during the embryonic development stages in a crab species. I was just wondering to ask about the possibility of gene knock-down or over-expression before hatching in aquatic animals.
Dose any have some experience regarding the drug/chemical/RNAi delivery into eggs in any aquatic animals?
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One problem you may face is that you do not have a genome or transcriptome. In that case you would need to sequence the part of the genome so that you can design the morpholino or CRISPR in order to perform knockdown (morpholino) or knockout (CRISPR). Unfortunately with CRISPR even if you do that you will not know what other sites in the genome the sgRNA has targetted - so maybe try both morpholino and CRISPR showing that both give the same phenotype.
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I am collecting embryos for histological analysis and need to genotype them beforehand. In the past I have worked with older mouse embryos (E8.5 and up), where it is easy to remove the yolk sac and use it for genotyping. However, I now need to start collecting E6.5 embryos. Given that they are so small, I am not sure whether there is enough material to be able to save the epiblast for histology and use other tissue for genotyping. Does anyone have experience with genotyping E6.5 embyros?
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Article Oocyte-derived Smad4 is not required for development of the ...