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Ecological Modeling - Science topic

This group is focused on dicussion and knowledge exchange within the scope of ecological modelling
Questions related to Ecological Modeling
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Generally speaking, I was checking if the presence of animal carcasses could be determined based on the chemical composition of the soil. I know that in the context of ecological modeling and environmental data analysis, the moderate predictive power of models, as suggested by the R² values presented in my analysis (around 38%), is often considered acceptable. I used GLM. I am having trouble finding scientific articles to support this... I am only finding articles from the "social sciences". Can you help?
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In environmental research, the acceptable R-squared (R²) value can vary depending on the specific context, variables involved, and the complexity of the phenomena being studied. Generally, R-squared is a measure of how well the statistical model explains the variation in the data points around the mean. In some environmental studies, particularly those involving natural systems with inherent variability, achieving a high R-squared value can be challenging due to the multitude of factors influencing environmental processes. Researchers often strive for R-squared values that are statistically significant and sufficiently robust to support their conclusions. Acceptable R-squared values typically range from 0.5 to 0.8, but this can vary widely depending on the field and specific research question. Ultimately, the interpretation of R-squared values in environmental research should consider the complexity of the system under study and the practical implications of the findings.
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Hello Experts,
I am trying to run an SDM for present and future conditions using Maxent, but the picture of the model appears to be not identical as well as losing a block of pixels near the top of the study area. Note that I had set my study area shape file in 'processing extend' and 'raster analysis' sections while extracting the layers. All the variables were processed at the same extent and cell size for maxent analysis.
Here I attached my study area, present, and future distribution for your convenience.
What could be the possible solution?
Thank you.
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Dear Mokshedur,
After preparing the data to input the MaxEnt Software, You should again cut your data based on the study area's border (Extract by Mask).
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I have a distribution map produced with only presence data. And there is a certain number of presence data that is in no way included in the model. How can I evaluate the compatibility of the presence data not included in the model I have with the predictive values corresponding to these points in the potential distribution map? So we can also think like this: I have two columns. The first column has only 1 values, the second column has the predictive values. Which method would be the best approach to examine the relationship between these two columns?
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I'm not sure I fully understand your question but when you have a column with a constant value (e.g., 1), this constant by definition cannot covary with another column/variable. A constant does not have any variance and therefore, the covariance/correlation with another variable will also be zero by definition.
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What kind of scientific research dominate in the field of The importance of biodiversity, the environment, environmental protection?
Please reply. I invite you to the discussion
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Predictive and Prescriptive Analyses of Flora and Fauna towards Environmental Protection Indentified Locations
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I would like to learn about the ecosystem/population modeling methods. I work in the field of freshwater fish ecology. Does anyone know of a course or workshop on this topic (for beginners and in Europe)? Thanks in advance for any recomendation!
Michaela
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Dear Michaela,
you should browse the courses of e.g. www.physalia-courses.org (Germany) or www.prstatistics.com (UK). IFAIK most of the courses are now held online.
HTH,
Ákos
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Hello,
I am doing an analysis to compare the growth of corals during one year. This is part of a coral restauration project. The corals are growing in different structures. To do the analysis, I did a linear mixed model including the site where those corals are located (there are two sites) and the origin (three sites where the corals are from). The response variable is area (of the corals, measured with ImageJ, we took photographts of the structures). Also, due to the data being recorded each month, I use the structure where the corals are as random effects (that's why I use a lmm). Now, I haven´t been able to test the sphericity assumption for repeated measures anova, does anyone know how to do that? I'm using R to analyse the data. Also, if I'd want to compare the sites (or the origin) to test differences between them (one site to another, or one origin site to another origin site), do i need the sphericity assumpition or is the assumption only for comparing within time? An additional problem is that one site has no corals from one of the origins.
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Ok, you mean I shouldn't do repeated measures because each structrure is within site? But I can still do a "normal" anova to test differences between sites (and origin)? And, in that case, do I need the sphericity assumption?
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Hi, I was hoping someone could recommend papers that discuss the impact of using averaged data in random forest analyses or in making regression models with large data sets for ecology.
For example, if I had 4,000 samples each from 40 sites and did a random forest analysis (looking at predictors of SOC, for example) using environmental metadata, how would that compare with doing a random forest of the averaged sample values from the 40 sites (so 40 rows of averaged data vs. 4,000 raw data points)?
I ask this because a lot of the 4,000 samples have missing sample-specific environmental data in the first place, but there are other samples within the same site that do have that data available.
I'm just a little confused on 1.) the appropriateness of interpolating average values based on missingness (best practices/warnings), 2.) the drawbacks of using smaller, averaged sample sizes to deal with missingness vs. using incomplete data sets vs. using significantly smaller sample sizes from only "complete" data, and 3.) the geospatial rules for linking environmental data with samples? (if 50% of plots in a site have soil texture data, and 50% of plots don't, yet they're all within the same site/area, what would be the best route for analysis?) (it could depend on variable, but I have ~50 soil chemical/physical variables?)
Thank you for any advice or paper or tutorial recommendations.
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Thank you!
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One dependent variable (continuous) ~ two continuous and two categorical (nominal) independent variables
I'm seeking for the best method for predicting a data collection with more than 100 sites. The distribution of all continuous variables is not normally distributed.
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Beyond the scarcity of information, are you sure of the relationship between variables?
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Hello Experts,
Since our targeted species is found only in the 2 km region of the study site, we are planning to use 30 m spatial resolution climate data on our Species Distribution Model. But the problem is that my local weather station is capable of providing 20 km resolution data. On the other hand, if I use WorldClim data that is also 1 km.
My questions are
1. Can I use these downscaled data (from 1 km or 20 km) on my local study on SDM, which will be on 30 m resolution?
2. If I downscale, will be there any variational changes on climate data? Is it acceptable to do so?
Please note that I'm new to this field.
Thank you for your valuable time.
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Dear all,
can anyone recommend me a basic course or workshop on ecological modelling (of freshwater ecosystems)? I would appreciate any tips. Thanks :-)
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You can use a program like NetLogo to model any ecosystem. I used to model seed dispersal in different landscapes :)
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Hello Experts,
My study site is relatively small and the targeted species is found as continuous patches. Do I need to consider Patch size/area in the MaxEnt model?
Does patch size have any meaningful measurable values that can be included in the MaxEnt model?
Thank you.
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The patch size can not be measured and given a value in the MaxEnt model. However, we can improve the representativeness of the sample sites within the MaxEnt algorithm.
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In your opinion, what are the biggest barriers and limitations for the global dissemination in the business processes of sustainable green economy based on the concept of green economy?
Please reply
Best wishes
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The research work has several barriers which are inherent in advanced economies facing industrilisation.
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Hello Experts,
We are at the beginning of making predictive modelling of an invasive plant species using MaxEnt. The species is found as a patch over the study area. I am new at using this model, have a piece of limited knowledge about it. I have reviewed several papers where only point locations of the present occurrence had been used.
Since my target species occurs as a patch, How can I take the polygonal area of the species where it occurs, instead of point location data?
Or are there any other methods to cover the whole patch of the species into SDM?
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No, only occurrence points. Keep in mind that bioclimatic or environmental variables are the ones that could potentially represent the species, they are not always the traditional WorldClim ones. To do this you must study the behavior of the species!
I hope I have been useful to you.
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In the region where you live, do local government authorities run an active pro-ecological policy?
Is sorting of waste required?
Are subsidies granted for the development of household mini-power plants based on renewable energy sources, for example for photovoltaic panel installations?
Are charging stations for electric cars installed in the surrounding streets?
Do people have the opportunity to run home gardens where they cultivate organic crops?
Are there paper packaging in the surrounding stores besides plastic packaging?
Are unmerged flower meadows maintained on housing estates and parks?
Are there houses for insects and birds in nearby parks?
What other pro-ecological activities, ventures are carried out in the region where you live?
Please reply
I invite you to the discussion
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Dear Colleagues and Friends from RG,
Recently, positive trends have emerged that may confirm the thesis about the growing level of pro-environmental awareness of citizens. One example of positive trends in this matter is the growing percentage of citizens who do not buy live Christmas trees cut down for Christmas, but artificial trees or Christmas trees grown in pots from plantations. I am one of those people who do not buy cut trees, but buy growing Christmas trees in pots and then put them into the ground in a nearby green area. A dozen or so Christmas trees that I have planted are already growing in two urban green areas. I have noticed that there is a growing number of people who do likewise. Another example of positive trends confirming the growing level of pro-environmental awareness of citizens is the growing percentage of citizens who mow lawns less and less frequently, set up flower meadows and home gardens with flowers, including vegetables and fruit. Since in recent years the share of discounters and other large-format stores in the overall sale of food products and agricultural products offering highly processed products and agricultural produce mainly from large-area farms that do not apply the principles of sustainable, pro-environmental organic farming has increased, citizens more and more often buy agricultural products directly from farmers running farms applying the principles of sustainable, pro-environmental organic farming or establishing their own home gardens where they grow fruit and vegetables for their own needs. Pesticides and other chemical plant protection products are usually not used in the home flower and fruit and vegetable gardens. In addition, people who run this type of home gardens usually have a high level of pro-environmental and ecological awareness and therefore also apply other principles typical of sustainable organic farming. Another example of positive, pro-environmental changes confirming the thesis about the growing level of pro-environmental awareness of citizens is the growing percentage of citizens who reliably sort waste, and municipalities and municipal city cleaning companies are gradually expanding the number of fractions into which waste is sorted and conducting social, pro-ecological campaigns encouraging waste sorting. . Municipal cleaning companies of the city, in consultation with the municipal authorities, periodically carry out collection of waste sorted into several fractions of waste in individual city districts and permanently in designated places in the city. In return, citizens returning sorted waste receive flowers, potted herbs, bush seedlings, bulbs or seeds for flowers, herbs, shrubs, etc. More and more citizens are taking part in these pro-environmental campaigns to collect sorted waste. In this way, the habits of reliable waste sorting are strengthened and the scale of recycling, i.e. the re-use of raw materials obtained from sorted waste for the production of new products, is growing. Another example of positive, pro-environmental trends is also the growing share of pro-ecological investment projects submitted by citizens to the commune as part of competitions for investment projects implemented by the commune and financed under 1 percent. the so-called participatory budget of the municipal budget. More and more proposals submitted in these competitions by citizens concern the creation of additional green areas in urban areas and the organization and protection of already existing green areas, including city parks. In some communes, cyclical picnics and festivals for citizens are organized, during which pro-ecological educational campaigns for children, adolescents and adults are organized. During these educational campaigns, contests in ecological, environmental, biology, etc. are conducted. Such pro-ecological educational campaigns are carried out by municipal departments of environmental management, local libraries or associations and non-governmental organizations cooperating with the commune, active in the field of pro-environmental social campaigns. Since many aspects of these positive, pro-environmental trends have emerged in recent years, the question of the role of the SARS-CoV-2 (Covid-19) coronavirus pandemic in this matter, i.e. the scale of the pandemic's impact on improving the pro-environmental awareness of citizens, may be relevant.
Best regards,
Dariusz
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I am working on a project which seeks to assess the ecological impacts of anthropogenic activities (Urbanization and Large-scale gold mining). I, therefore, need any ecological models to support and run analysis
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As a formal discipline, ecological impact assessment has been developed primarily in support of EIA. The basic components of ecological impact assessment are baseline studies (which may or may not incorporate ecological scoping and screening procedures), impact assessment, impact evaluation, mitigation, and monitoring. The process of ecological impact assessment relies in the first instance on standard techniques of survey, taxonomic classification, monitoring, and predictive modelling. These techniques are fundamental to the academic discipline of ecological science, which is dispassionate and objective and seeks simply to quantify ecosystem components and the processes that link them. Thus surveys might be carried out to estimate populations of species linked by processes such as nutrient cycling, energy flow between trophic levels, or population dynamics which can be measured as rates and used as a basis for modeling.
Besides, Leopold Matrix which is one of the most frequently used tools, there are many theories and tools that have been developed, which allow us to conceptualise, rationalise and assess the environmental impacts of human activities. These frameworks enable the identification and quantification of environmental issues and impacts, and ways to assess modification of practices or new technologies. Life Cycle Assessment is an established methodology used to quantify the environmental impacts of products, processes and services.
Please refer following literature for more insights:
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What are the examples of eco-innovations that can significantly reduce the scale of environmental pollution and reduce greenhouse gas emissions and slow down the faster global warming process?
Currently, the problem of growing garbage with unsorted waste is ignored in many countries, but because in the future the negative aspects of the problem of environmental pollution, including plastic, will grow, so in the future other countries will also try to solve this problem.
The problem of environmental pollution with plastic waste is one of the key global problems. This problem should be solved in all countries, and above all those that "generate" the most. The European Union has already undertaken specific measures in this direction, eg by introducing legal regulations under which plastic will be withdrawn from packaging by 2021 and replaced with biodegradable materials such as vegetable origin. However, these regulations concern only European Union countries.
Similarly with other aspects of environmental pollution and greenhouse gas emissions. Also, some large global economies are currently ignoring growing problems. But such an approach must be quickly changed, because there is little time to implement pro-ecological reforms, primarily in terms of reducing environmental pollution and reducing greenhouse gas emissions.
As regards the reduction of greenhouse gas emissions, it is necessary to reform the energy sector in such a way as to switch from the production of electricity based on the classic energy based on the combustion of minerals to technologies based on the development of renewable energy sources. In addition, it is also important to develop electromobility in the automotive industry and other types of transport.
The global warming process is progressing faster, the scale of the negative effects of climatic disasters and weather anomalies, which are a consequence of the ever-faster global warming process, is increasing. There is little time left, according to climatologists only max. over a dozen years to implement the necessary ecological reforms and innovations, including in the area of energy development based on renewable energy sources, to stop or even significantly slow down the ever-faster global warming process.
In addition, one of the main types of eco-innovations includes innovative technologies for building zero-energy houses and residential buildings. The special design and materials used ensure low energy consumption and closure of the energy cycle in a cycle in which household power plants generating heat and electricity based on renewable energy sources are an integral part, primarily through the use of photovoltaic panels and wind farms.
As part of the implementation of the necessary pro-ecological reforms, it is also necessary to develop eco-innovations that will improve the automation of waste segregation and recycling processes. In addition, it is also important to create innovative technologies for the creation of new biodegradable materials that will replace plastic in packaging.
A good solution is the use of packaging made of biodegradable materials of origin, eg vegetable, on the basis of raw materials in the form of crops. These types of packaging could be consumed after their use, such as plates and cutlery made of rice or other cereals, or could be processed into compost for animal feed or for fertilizing arable land, or for incineration in a specially built incineration plant.
In connection with the above, the increasingly common application of ecological innovations, which are necessary to reduce greenhouse gas emissions and to limit, slow down the faster global warming process, will also contribute to increasing the scale of sustainable green economic development realized according to the green economy concept.
These processes of implementation of ecological innovations and implementation of pro-ecological reforms should be conducted in all countries, and to the largest extent in developed and developing countries, industrialized countries, including the largest economies in the world, which are the largest emitters of greenhouse gases and producers of garbage and non-degradable waste, toxic or hardly degradable.
Do you agree with me on the above matter?
In the context of the above issues, I am asking you the following question:
What are the examples of eco-innovations that can significantly reduce the scale of environmental pollution and reduce greenhouse gas emissions and slow down the faster global warming process?
Please reply
I invite you to the discussion
Thank you very much
I pointed out the high level of relevance of the issue taken up in the above question in the article:
Please respond with what do you think about the issues described in this article?
Best wishes
Dariusz Prokopowicz
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On 1.11.2021, Earth, which is very important for the future of our planet, began at the UN Climate Summit COP26 in Glasgow, Scotland. A little earlier, i.e. during the G20 summit preceding the Glasgow summit, the target of reducing CO2 emissions was set so that in the current 21st century the temperature increase would only reach 1.5 degrees C. Based on scientific research and predictive models, it is estimated that 2.7 degrees Celsius, the temperature of the atmosphere will increase, even if all the previous Paris decisions and the previous COP climate summits are implemented, it is too much. It is necessary to urgently create further ecological innovations and capture CO2 from the atmosphere so that the increase in the temperature of the atmosphere at the end of this century stops at 1.5 degrees C. Until now, the temperature of the atmosphere has increased by 1.1 degrees Celsius compared to the pre-industrial era. It is necessary to urgently create and implement new pro-environmental innovations and ecological technologies, thanks to which the green transformation of the energy sector will be fully accomplished during the present decade of the 1920s. Only in this way will the increase in the temperature of the atmosphere along the current path of growth, estimated at around 2.7 degrees C at the end of the 21st century, be significantly reduced and we will avoid the climatic Armageddon at the end of this century.
Best regards,
Dariusz Prokopowicz
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How should the systems of nature protection and biodiversity of natural ecosystems be dispersed in order to increase the effectiveness of these systems and reduce the scale of degradation of the natural environment?
What do you think should be improved in nature conservation systems and biodiversity of natural ecosystems in addition to just increasing financial outlays on nature conservation policies conducted by government agencies and ministries of the environment?
A significant part of financial expenditures of nature conservation and biodiversity policy is devoted to the promotion of nature protection and natural environment protection issues. However, the effectiveness of this type of promotional campaigns is low, because without applying legal restrictions, enterprises do not change their technologies to be more ecological if they do not see in this business realized in a short time. Even the occasional UN climate summits in which government representatives from the majority of countries take part do not cause significant real changes in the policy of nature protection and biodiversity? Usually, the largest industrial economies in the world do not sign the obligations of rapid reduction of greenhouse gases and the issue of increasing spending on environmental innovation in the energy sector. Why, despite the growing scale of public awareness, there is no significant improvement in the implementation of nature conservation and biodiversity policy, there are no real measures that would result in a significant reduction of greenhouse gas emissions and the slowing of the global warming process?
Please reply
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Thank you very much
Best wishes
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Dear Roman Bohdan Hołyński,
Thank you for your response. Yes, of course population growth has been going fast for hundreds of years. This issue has been pointed out since the beginning of the first industrial revolution in the 17th and 18th centuries. We now have the fourth technological revolution, the problem is many times larger and still the same questions. Until now, technological progress, including in the field of new technologies increasing the efficiency of agricultural production, has solved the problem of feeding the rapidly growing population. On the other hand, however, in the least developed countries, the scale of poverty and food shortage is becoming a rapidly growing problem. In addition, climate change causing droughts, forest fires, soil barrenness, pest infestations etc. exacerbate these problems. Until recently, technological progress seemed to solve the key problems of the development of civilization. However, in recent years there has been more and more evidence to challenge this thesis. If the process of global warming accelerates in the next decades, the above problems will quickly worsen and the technological progress will become insufficient to solve them. Therefore, our view on this issue is very similar.
Thank you very much,
Best regards, Greetings,
Dariusz Prokopowicz
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We have a locally endemic plant species which distributes just a specific narrow area. It spreads almost everywhere in that area, but it does not occur anywhere except that area. We want to model the distribution of the species with maxent. The bedrock in the distributed area is the same everywhere and the elevation variation is really low. Would it be right to produce artificial presence data and model it by putting artificial (random) sample points into the field?
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The regular way to use Maxent is to use your presence data and your environmental layers. The extent of the environmental variables should be larger than the range of presence points by 10-50%. Maxent will generate random pseudo-absence points for comparison. Never produce presence points. You may also use R package ENMeval to determine best model parameters.
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Hi all,
Newbie here to ecological modelling! I am looking to get an idea of different model approaches to study changes in wolf behaviour in First Nation communities. Any good resources/papers that can help me expand on choosing the appropriate model to highlight changes in wolf behaviours to things such as human induced landscape changes, fires, logging, herbicide application, pack dynamics (hybridization with coyotes - how this may impact behaviours depending on purity of individual)?
Miigwetch !
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You can use either simple linear models or complex machine learning models, depends on the data you have. Your question can be formatted in a model: wolf behaviour ~ f(landscape changes, fires, logging, herbicide application, pack dynamics). You can add some easy access data (climate, land form, land use, NDVI, NPP, etc.) as explanatory variables. If your wolf behavior variable is binomial distributed (such as attack, not attack), you can use logistic regression. If your wolf behavior variable is a count data (how many time the wolf do something), you can use Poisson regression of negative binomial regression. Remember to including two-way interaction terms and quadratic terms in your model. If you have too many explanatory variables, you may start from a nonparametric complex model such as random forest, which can help you to weight variables and select important ones.
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Should sustainable pro-ecological economic growth based on the green economy concept become one of the key pro-social, pro-development and anti-crisis segments of the national and supranational socio-economic policy?
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Best wishes
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Yes, because more and more scientific studies indicate that the climate is warming up and the accelerating global warming process is a result of civilization's greenhouse gas emissions. The pro-environmental policy should be a component of the socio-economic policy. On August 9, 2021, the sixth IPCC Report "Climate Change 2021: the Physical Science Basis" was published, ie the sixth report summarizing the current and predicted climate changes developed by the UN Intergovernmental Panel on Climate Change. This report was prepared on the basis of the analysis of 14,000 scientific papers. The report deals with the issues of climate change, the progressing global warming process, the effects of this process, etc. The report confirms that the ongoing climate changes result mainly from civilization greenhouse gas emissions. The report indicates that the current record high temperatures of forest fires in southern Europe and elsewhere in the world are another result of the accelerating global warming process. On August 11, 2021, in Sicilian Syracuse, a shade record of 48.8 degrees Celsius was recorded ever recorded in Europe. This unusually high temperature has caused many new forest fires. For example, forest fires in southern Europe have been so severe that international fire-fighting aid has been of help. There are more and more negative effects of climate change. This year, in many parts of the world, there have also been extremely violent storms and downpours causing flooding and flooding in cities and farmlands. This is due to the strong evaporation and the accumulation of large amounts of water vapor in the clouds during increasingly frequent hot weather. Unfortunately, climate change is proceeding faster than previously thought. Therefore, it is necessary to urgently develop environmental policy, increase the scale of implementation of the sustainable development goals, carry out a pro-environmental transformation of the energy sector, etc. Pro-environmental policy, as an important segment of socio-economic policy, may be an important element initiating the process of pro-environmental transformation of a classic growth, brown economy of excess into a sustainable, green , a zero-carbon, zero-growth and circular economy. The pace of implementation of this pro-environmental transformation determines the extent to which man manages to slow down and possibly in the future reverse the negative processes of climate change.
I invite you to the discussion,
Thank you very much,
Best regards,
Dariusz Prokopowicz
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I wanted to ask that if we have to develop a modelling tool to anticipate the impacts of weather extreme events on the water quality of a lake but the amount of information collected in the field is scarce. What kind of models would be better to use and which are the natural processes we should include in the models. Please guide me briefly if possible.
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I think mike she will be best suited for integrated hydro metrological and water quality modelling purpose
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By 2040, a deficit of clear water will appear in most countries in the world.
On the one hand, the use of water in the production industry of various technical and automotive goods is growing, but also in some areas of food production.
For example, 1650 liters of water absorbs, for example, the production of 1 hamburger, because the production of meat absorbs very large amounts of water.
In addition, a progressive global warming process and more and more frequent droughts appearing in various places around the earth, mainly in the subtropics and in some places of the temperate climate.
In connection with the above, the question becomes more and more relevant:
How should you improve the economical sustainable environmentally friendly clean water economy?
How to improve the processes of purification of used, contaminated water?
How to obtain water develop technologies for desalination of sea water or condensation of water in areas subject to periodic drought?
How to improve the extraction of pure Oligocene water contained in the Earth's crust in desert areas?
Please reply
Best wishes
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One of the serious negative effects of the accelerating global warming process is the increasing drought, falling rainfall, drying up water reservoirs, ponds and rivers, and subcutaneous waters. According to the results of scientific research, water obtained from deep-sea deposits, which was formed during ice ages thousands of years ago, should not be used for watering lawns only for the most important needs, i.e. for drinking and hygiene. On the other hand, for watering lawns, gardens and farmlands, water collected from installations and retention reservoirs, in which rainwater is caught and collected, should be used. In addition, other sources of water used in various applications, including watering lawns, gardens, farmlands, should also be obtained from seawater desalination plants and sewage treatment plants.
Best regards,
Dariusz Prokopowicz
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What must change in economic policy to stop the predatory exploitation of the Amazon rainforests, i.e. the largest complex of natural forest ecosystems of forest environments, in addition characterized by the greatest biogeographical biodiversity of flora and fauna?
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I invite you to the discussion
Thank you very much
Best wishes
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Protection of biodiversity and specific ecological sites of forest ecosystems is one of the key aspects of the protection of the biosphere and microclimate of individual natural areas and in the context of the state of nature and climate of the entire planet Earth.
Best regards,
Dariusz Prokopowicz
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In some discrete ecological model articles in bifurcation analysis, they have taken Taylors series expansion up to 2nd order; in some articles, they have taken Taylors series expansion up to 3rd order. What should we do in general? Or is there any specific reason for taking up to 3rd order term?
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Hi Tapan,
I would suggest the level of expansion would depend on the level of non-linearity that exists in the particular function. You could assess your function with any available sample data and determine how well 2nd and 3rd order functions fit by evaluating the model variances (RSSE) with the sample data set.
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I am currently working on my MSc dissertation with a focus on 'Impacts of urban surfaces i.e. roof surface, pavement surface and vegetation on urban micro-climate in hot arid regions'.
Envi-met simulation software was used to predict the air temperature of the micro-climate. However, due to the software's limitations the surface air temperature of the roof can not be calculated.
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Hi dear Farah.
Climate Consultant software
Climatic studies include reviewing the climate file and providing diagrams and data related to temperature change, amount of radiation and sunlight, etc. , This software is a graphic-based computer application that helps architects, students, etc. to better understand the climate of their desired location and be able to analyze it. , For sustainable design and design of zero energy buildings, we need climate design, which this software leads us to this goal. , This software uses 8760 hours of annual data in EPW format recorded by meteorological stations.
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Has the classic economy lost its relevance to the energy market and therefore whether the process of necessary proecological reforms in the energy sector involving the replacement of energy sources, ie classic energy sources based on burning minerals for renewable energy sources should be coordinated by the state as a pro-environmental interventionist anti-crisis state?
Still at the end of the 21th century, in many publications written in the convention of classical economics, theses were formulated that energy should be shaped by the mechanism of market-harmonizing sides of demand and supply. However, this philosophy concerned classic energy based on the combustion of minerals. Mineral energy deposits in certain parts of the world are determined for several decades of extraction.
If the development of mining technology allows to reach and extract energy from deeper deposits than currently exploited and decks located under the sea and ocean bottoms, such estimated deposits would allow mining of these deposits in some places of the world for much longer than 100 years. However, humanity can not wait so much for pro-ecological reforms in the energy sector and the slow process of switching to renewable energy sources, which is happening in some countries, including the largest economies in the world, the largest emitters of greenhouse gases.
Currently, the philosophy of the energy sector is starting to change. Now the obvious issue is the need to quickly implement pro-ecological reforms without contemplating the depleted energy resources of the Earth's crust. This wait could take about 100 years or more than 100 years in many countries and this is too long, because at the end of the 21st century, according to climate change analysis, drastic climatic catastrophes will occur due to the predicted acceleration of the global warming process in the following decades.
According to the published and presented results of climatologists' research during the recent UN Climate Summits and Conferences on the problem of progressing global warming process, unless by 2030 at the latest the world will not show the classic energy based on the burning of minerals for renewable energy sources and motorization for electromobility and there will be no appropriate improvement of segregation waste and recycling, by the end of the 21st century, the average temperature at the Earth's surface will increase by 3-4 degrees Celsius globally, and the scale of climate cataclysms and weather anomalies will increase many times in relation to the current state.
In view of the above, the world can no longer wait for the depletion of energy minerals. This issue, which is particularly important for humanity and life on Earth, can not be left to the market mechanism and classical economy, whose philosophy has long been undermined, already in the period of the Great Depression of 1929-1934 it was demonstrated that Keynsovian state interventionism is needed to bring the economy out of the deep economic crisis if the liberalized private sector led to a crisis and the economy quickly does not return itself to balance and high economic growth on the basis of self-acting market mechanisms.
We currently have a similar situation. The world inevitably aims at increasing climatic cataclysms caused by the accelerating global warming process. these unfavorable processes for humanity and life on Earth will become a source of intensification of migration of people from subtropical areas, on which it will be impossible to live and live in a few dozen years due to high temperatures and droughts. In addition, there will be economic crises resulting from the global warming process. Humanity has no time to put off the necessary pro-ecological reforms for the future, these pro-ecological reforms in the energy sector need to be implemented now and it should be a process coordinated by the state in the context of pro-environmental anti-crisis state interference.
Do you agree with my opinion on this matter?
In view of the above, I am asking you the following question:
Has the classic economy lost its relevance to the energy market and therefore whether the process of necessary proecological reforms in the energy sector involving the replacement of energy sources, ie classic energy sources based on burning minerals for renewable energy sources should be coordinated by the state as a pro-environmental interventionist anti-crisis state?
Please reply
I invite you to the discussion
Thank you very much
Best wishes
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Energy is an important sector of the economy that creates jobs and value by extracting, transforming and distributing energy goods and services throughout the economy. http://reports.weforum.org/energy-for-economic-growth-energy-vision-update-2012/
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Ecological innovations should contribute to accelerating the process of a global change in the strategy of civilization development towards sustainable ecological and socio-economic development. In the context of increasing greenhouse gas emissions, the ongoing global warming process, growing environmental pollution and the devastation of many environments and natural ecosystems, it is necessary to stimulate the development of eco-innovation and pro-ecological reforms in economic processes to implement sustainable economic and environmental friendly socio-economic development based on green economy concept.
Yes, it is necessary to change the development strategy based on intensifying the exploitation of the Earth's resources on the sustainable development strategy. It is necessary to develop new energy technologies based on renewable energy sources to slow down the progressing greenhouse effect of the Earth in order to reduce the risk of dramatic natural cataclysms. It is necessary to develop ecological innovations, while it may not be too late. It is necessary to save the Earth by extinction for future generations.
The 21st century is the last moment to introduce global sustainable development based on the development of renewable energy and ecological innovations. Sustainable development should be analyzed and measured in correlation with the analysis of economic growth and the share of individual sectors in the country's economic development, including the transformation of traditional energy sources into renewable energy, environmental reclamation and recovery of recyclable materials, and ecological innovations.
Do you agree with my opinion on this matter?
In view of the above, I am asking you the following question:
How to activate the development of ecological innovations and pro-ecological reforms in economic processes?
Please reply
I invite you to the discussion
Thank you very much for your response and participation in the discussion
Best wishes
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Dear Pisipaty Srinivas Kishore, Emmanuel V Murray, Yaşar Alkan, Pisipaty Srinivas Kishore, Beatrice Jazotte de Vasconcelos, Frieda Gress, Krisztina Melinda Dobay, D A Gayan Nayanajith, Tsotne Iashvili,
Thanks for the kind words, positive recommendations for the subject of this discussion and confirmation of the above theses. I am glad that we have a similar view on the issues of pro-ecological innovations and pro-environmental projects.
Best regards,
Dariusz Prokopowicz
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Yes, in my opinion, sustainable pro-ecological economic development should be an important determinant of shaping economic policy. Do you agree with my opinion?
For many centuries, the economies of countries and enterprises have developed without knowing or ignoring the principles of sustainable pro-ecological development. On the other hand, in the 21st century the realities have changed, the global warming process is accelerating and if the reforms of pro-ecological changes, development of renewable energy, recycling development, development of environmental protection etc. are not implemented, in the short term the global warming process will become an irreversible process and at the end of the 21st century the planet Earth, humanity and many other forms of life on Earth are threatened by climatic extermination due to the high rise of negative anomalies and climatic cataclysms.
Sustainable pro-ecological economic development, now and in the future, can not be ignored further, it can not be considered a myth. Economics must change towards the concept of green economy. The economic policies of states should also change in such a way as to activate for the development of ecological innovations and support the processes of sustainable pro-ecological development.
Please, answer, comments.
I invite you to the discussion.
Best wishes
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Perhaps the SARS-CoV-2 (Covid-19) coronavirus pandemic will increase the scale of pro-environmental awareness of citizens and sustainable and pro-ecological economic development will become an important strategic objective of economic policy.
Greetings,
Dariusz Prokopowicz
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In connection with the progressing process of global warming, the importance of creating and implementing eco-innovations, including architectural eco-innovations, is growing.
Currently, projects are being created: City of tommorow, Eco City, Vertical Forest etc.
Will humanity manage to realize these projects?
Will the global warming effect of global warming lead to the disaster of many urban agglomerations?
Please reply. I invite you to the discussion
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Dear Vera Maura Fernandes de Lima,
Thanks for the answer and your participation in the discussion. Yes, the topic is topical and the importance of this topic may grow in the coming years.
Thank you, Regards,
Dariusz Prokopowicz
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What technologies dominate in the development of urban agglomerations according to the concept of smart-ecology sustainable development cities?
I invite you to the discussion
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Dear Debrayan Bravo Hidalgo,
Thank you very much for the proposal of an interesting publication entitled Smart and sustainable cities and buildings. Yes, the subject of this publication can, to a large extent, be a significant substantive contribution to our discussion on the issues of: smart ecology sustainable development cities.
Thank you, Regards,
Dariusz Prokopowicz
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Is ecological sustainable agriculture developed according to the concept of natural ecosystems, including the genetically-based genetically-scaled species that will be used in a limited, fully controlled environment, help in the 21st century in increasing the productivity of crop production in the situation of declining areas of arable land?
In connection with the warming up of the Earth's climate by the end of the 21st century, a significant part of the arable land will be either flooded by the seas and oceans or will be excluded from the production of crops due to intensifying drought. As part of the civilizational progress, including increasing the productivity of crop production per hectare, it will be necessary to continue research in this field. As part of the pro-ecological development of agriculture based on the assumptions of sustainable pro-ecological development, ie the concept of green economy, chemistry should be gradually reduced to reduce environmental pollution and reduce the impact of chemicals on human health and other life forms. In this way, the adverse impact of civilizational imbalances in natural ecosystems will be limited. In connection with the above, the aim of continuing increasing the production efficiency of agricultural crops per hectare in the future will be intensified by mechanization automation, robotization, improvement of weather forecasting and logistics systems for field works, and improvement of current crop varieties by increasing their resistance to viral and bacterial diseases, fungal, parasitic etc. An important field of research and scientific discipline, thanks to which it is possible to gradually improve current crop varieties by increasing their resistance to diseases is genetics. In addition, it is necessary to improve irrigation and greenhouse systems due to the progressive global warming and more and more often natural cataclysms. It is also important to improve the techniques of recycling and re-use of waste from intensified agricultural production, so that those wastes that are unsuitable for re-use were as few as possible. It is also important to limit the wastage of produced crops, reduce and develop the recycling of organic waste from the food production process in the agri-food processing sector. As part of the development of sustainable agriculture, it is also important to develop organic farming referring to natural ecosystems. This type of agriculture refers to natural ecosystems in which primary varieties of arable crops function or function. As part of this concept of ecological agriculture, different agricultural crops grow on one agricultural area, which also limits the potential scale of pest feeding and feeding, and ensures a better economy of savings in the use of plant protection products. Therefore, the use of genetics should be limited only to the successive improvement of current varieties of agricultural produce by increasing their resistance to viral, bacterial, fungal, parasitic diseases, and not to create completely new species of flora and fauna. In this way, through the process of improving, increasing resistance to diseases of agricultural crops, genetics would help to restore or at least significantly increase the natural balance in intensified agriculture. For this process to work it is necessary to develop also the above-mentioned other techniques of environmentally-friendly sustainable development of agriculture. All of the above-mentioned techniques must be applied in a purposefully, precisely planned integrated system of managing sustainable and environmentally friendly agriculture. In this way, the developed agriculture will be adequate to increase the risk of unfavorable effects of the progressive global warming of the Earth's climate and will be one of the most important determinants of the globally developed sustainable economic development of the entire human civilization, ie deliberately oriented development according to the concept of green economy.
In view of the above, the current question is: Is ecological sustainable agriculture developed according to the concept of natural ecosystems, including the genetically-based genetically-scaled species that will be used in a limited, fully controlled environment, help in the 21st century in increasing the productivity of crop production in the situation of declining areas of arable land?
Please, answer, comments. I invite you to the discussion.
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Nice question
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Whether in the context of the need to develop pro-ecological reforms, ecological innovations, sustainable pro-ecological development, etc., will the social market economy model change into a model of a sustainable social economy in the future?
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The turn of the Earth's journey can no longer be stopped, and it is not because the sustainable social economy can become a PROGRESSIVE AND STABLE economic model, it is that there is no other option. The change has to take place "yes or yes". But setting achievable objectives in the short or medium term. These changes see that there is an existing model that must not be eradicated, but transformed, since the business sector has certain facilities and infrastructures and therefore still stable. You cannot close without a gradual transition process. Taking down and building again is not the solution. For example, there are sectors that seem to belong only to the "Memory of the past", but we can make the turn starting by thinking about the reuse and development of many of the abandoned or semi-abandoned Rural Sectors.
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What disciplines, areas of contemporary economic systems, industries, etc. will in the 21st century develop the model of sustainable pro-ecological economic development according to the concept of green economy?
In connection with the progressing global warming and the increase in the risk and frequency of climate disasters, it is necessary to implement pro-ecological reforms as soon as possible into economic processes. First of all, renewable energy sources should be developed, replacing the classic energy based on the burning of minerals. In addition, it is necessary to improve the technology of automation and robotization in the processes of waste segregation, recycling and re-use of various types of raw materials. Also, electromobility, ecological agriculture, zero-energy construction, etc. should be developed.
In recent years ecological innovations have been created mainly in the field of renewable energy sources, improvement of waste segregation techniques, recycling, treatment of polluted water, reclamation of a devastated natural environment, energy-efficient construction, electromobility etc. However, more and more eco-innovations, new technological solutions, technical improvements which is part of sustainable ecological development, is also created in many other fields of science.
In view of the above, are examples of pro-ecological undertakings, technological improvements compatible with sustainable ecological development or ecological innovations that are also created in one of the following or other related fields of science, for example: Molecular Biology, Biotechnology, Anthropology Theory, Medicine, Electrical Engineering , Artificial Intelligence, Genetics, Business Administration, Risk Management, Big Data, Business Intelligence, Automation & Robotics, Climatology, Agriculture, Biophysics, Biochemistry, Medical Intelligence, Artificial Neural Networks, Ecosystem Analysis, Power Engineering, Construction, Food production, Forest ecology, Biology, Geoscience, Government Programs, Behavioral Sciences, Biodiversity Assessment, Green Architecture, Greenhouse, Waste, Household Products, Information Society, Innovation Management, International Entrepreneurship, Internet Technologies, Knowledge Creation, Bioelectric Energy gy Sources, Business Model Innovation, Cataclysmic Variables, Chromatography, Clean Energy, Cleantech, Climate Prediction, Collaborative Innovation, Commercialization, Computational Intelligence, Computer Science and Engineering, Conservation Biology, Consumer Behavior, Corporate Governance, Creative Economy, Crisis Communication, Cyber Security, Data Analysis, Database Administration, Development Cooperation, Digital Ecosystems, Economic Ecoindicators, Ecosystem Ecology, Energy Industry, Ecological Modeling Ecological Economics, Ecological Indicators, Discovery, Earth Sciences, Earthquake Forecasting and Geocataclysm, Econometric Analysis, Economic Integration, Economics of Innovation, Ecosystem Engineering, Electricity, Electronic Systems, Energetic Materials, Energy Technologies, Environment, Environmental Biodegradation, Flora, Food Consumption Life Sciences, Logistics Management, Materials for Sustainable Energy, Astronomy & Astrophysics, Nanomaterials, New Media Technology, Recycling, Physics of Global Warming, Plant Protection, Predicive Analytics, Production Planning, Project Development, Public Economics, Public Policy, Public Policy, Sociobiology, Space Science, Sustainable Agriculture, Sustainable Development Strategies, Technology Forecasting, Transport Economics, Water Resources, Weather Forecasting, Wildlife Conservation, World Economy, ...?
In view of the above, the current question is: What areas of knowledge will be involved in shaping sustainable pro-ecological economic development in the 21st century?
Please, answer, comments.
I invite you to the discussion.
Best wishes
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In order for the pro-ecological transformation of the traditional brown economy to a sustainable green economy / circular economy to run smoothly, it is necessary to increase the scale of implementing the principles of sustainable development, develop social environmental (ecological) responsibility, carry out pro-environmental reforms, create and implement eco-innovations in economic processes, etc. in various sectors. and economic sectors. In addition, the process of achieving the sustainable development goals should be carried out in the formula of integrated, correlated pro-environmental processes of implementing green business ventures and investment projects implemented in various industries and sectors of the economy. It is necessary to develop pro-environmental state intervention, under which the state should inspire, co-finance, motivate and integrate the implementation of green economic ventures.
Regards,
Dariusz Prokopowicz
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I would highly appreciate it if my fellow ecologists (biologists) provide their opinion on the thoughts below [esp., shortly tell us which path may be more effective, if they know another way, if there is a recent breakthrough toward this goal].
To consider the effects of Acclimation and Directional Selection on populations' thermal sensitivity in the (mechanistic or phenomenological) modeling of ecological impacts of temperature variability (and climate change), we can follow two general paths:
(1) To produce enough empirical data to define simplistic indices of warm adaptation capacity (based on exposure temperature and duration) for at least some keystone species [a simple e.g., ARR; Morley et al., 2019]. Such indices can only be applied to models' outputs.
(2) To understand the GENERAL mechanisms (principal functional components) defining the heat sensitivity of various taxa [e.g., OCLTT, Pörtner, 2010], define how the component (quantitatively) relates to the capacity for rapid warm adaptation [no Ref.], and set (adaptive) feedback loops in existing models [a simple e.g., Kingsolver et al., 2016].
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Hello Jahangir; You will want to see this paper.
Riddell, et al. 2021. Exposure to climate change drives stability or collapse of desert mammal and bird communities. Science 371(6529); 553, 633-635.
It makes comparisons over a 100 year span of time in the Mojave Desert in California. Thermoregulation!
Best regards, Jim Des Lauriers
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In your opinion, what are the biggest barriers and limitations for the global dissemination in the business processes of sustainable green economy based on the concept of green economy?
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Thank you for your comments and explanations regarding the concept of green economy and the goals of sustainable development. I drew attention to important issues related to the green economy.
Best regards,
Dariusz Prokopowicz
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I am currently in the process of trying to learn how to do SDM correctly and I want to evaluate the models I run with OpenModeller.  My understanding is that one should use om_test, but I am having trouble understanding exactly how to use it.  Could anyone help me out on how to use it?  
From my understanding, one runs om_test with the Serialized model created from om_console, but not the projection result.  However, I thought that what one should actually be interested in evaluating is the projection result and not the model one created to make the projection.  Is my understanding of what it means to evaluate a model wrong?  Hopefully my question makes sense.  Any help would be greatly appreciated.
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Why, despite the scientifically confirmed fact that the global warming process is progressing faster and faster in many countries, so little is done in terms of necessary proecological reforms and implementation of ecological innovations and development of energy based on renewable energy sources, development of electromobility, plastic reduction from packaging, improvement of waste segregation and development recycling?
Due to the accelerating process of global warming, it is necessary to increase expenditures on the development of eco-innovations, their industrial implementation and accelerate the implementation of necessary pro-ecological reforms, first of all development of energy based on renewable energy sources, development of electromobility, plastic reduction from packaging, development of biodegradable applications materials of organic origin, improvement of waste segregation processes, development of recycling, organic farming, zero-energy construction and other key aspects of sustainable pro-ecological development carried out according to the concept of green economy, etc.
Do you agree with me on the above matter?
In the context of the above issues, I am asking you the following question:
Why is the process of implementing proecological reforms in energy and other eco-innovations so slow?
Please reply
I invite you to the discussion
Thank you very much
Best wishes
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prompts, commitments, feedback, social norms, incentives, and convenience have all been shown to effectively promote proenvironmental behavior–-at least in some contexts, for some behaviors, and for some individuals.... Schultz, P. (2014). Strategies for promoting proenvironmental behavior: Lots of tools but few instructions. European Psychologist, 19(2), 107.
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I would like to make individual-based rarefaction curves in PAST software but struggle with creating the right input data table. I have 5 different sites, 7 sampling efforts on each (due to the weather conditions some of our traps were lost at some point, which is why I would prefer to use individual rarefaction). Could anyone share with me how to prepare the table with the information on the accumulation of individuals and species? Thank you :)
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Hi Lara, in PAST every column represents a sample/site, each row a taxon/species. I'm nore sure how your data are organized, but you could pool your samples per site and would get 7 columns and n rows according to your number of species. If you click on the column attribute button you could name each column, and then simply highlight all columns and run "individual based rarefaction". There are plenty of videos on youtube, where you might find further infos. I hope this helps.
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Hello there! I kept myself busy for my master thesis with ecological population models including predation. I wonder how to model a prey switching process as simple as possible? For now, I saw some models that "forces" the predator with a static attack rate and conversion efficiency per prey species to go for one prey as the modeller intends it. In nature, I would expect the predator to switch the prey species if the conversion efficiency is better for a another prey item. Maybe this switching process is also density dependend. What do you think? I am happy about new input, opinions or publications adressing this question( I am primarly looking for compurional models and how these question has been solved there).
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Ashish Poonia this was not the question. I wonder how I can implement into a model the naturally occured predator - prey switching process. If I, as the modeller, set a static attack rate, I force the predator to prefer one over the other prey. In the context of conversion efficiency, I would force the predator to go for one prey that might deliver less energy than another prey item.
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Dear Species Distribution Modelers and All,
Have you ever tried to select the specific month/quarter (e.g. wettest quarter for bio8) in a way other than the default one? If yes, how? If not, why not? E.g. in this paper a novel method (called 'static' approach) is suggested for calculating bioclimatic variables for future time periods: the month/quarter is selected once in the reference ('current') period and used later as it is fixed for all the studied periods.
Have you ever considered this method, or do you think it may have relevancy for your further research?
Thanks,
Ákos
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Zagir Ataev I think there are many ways because there are no rules in modeling :)
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Do you agree with my opinion that protection of the natural environment, biodiversity is one of the greatest civilization challenges of the 21st century?
Please reply
I pointed out the high level of relevance of the issue taken up in the above question in the article:
Please respond with what do you think about the issues described in this article?
Best wishes
Dariusz Prokopowicz
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Yes
Now we are facing the problem of encroachment on nature
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What kind of scientific research dominate in the field of Sustainable pro-ecological anti-crisis Keynesian socio-economic development?
Please, provide your suggestions for a question, problem or research thesis in the issues: Sustainable pro-ecological anti-crisis Keynesian socio-economic development.
Please reply.
I invite you to the discussion
Thank you very much
Dear Friends and Colleagues of RG
The issues of specific programs to improve the economic, financial, material and housing situation of households as key instruments of pro-development keynesian anti-crisis state intervention and significant components of the socio-economic policy of the state I described in the publications:
I invite you to discussion and cooperation.
Best wishes
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From an epistemological point of view, it follows that the economic analysis of the object must complement, or better, be part of a sociological analysis of the object. Like economic sociology, the two approaches on this point are difficult to distinguish, socio-economics addresses the economic object. According to Campbell, 2003, at the international level, place of exercise of international financial institutions, the policies of insertion of developing countries into the world economy have mainly resulted in the promotion of foreign investment as a driving force. of growth. Thus, as a condition of access to loans granted by these institutions, the World Bank and the International Monetary Fund in particular, developing countries have had to open their economies to investment and international trade.
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What kind of scientific research dominate in the field of Pro-development Keynsian pro-environmental state intervention?
Please, provide your suggestions for a question, problem or research thesis in the issues: Pro-development Keynsian pro-environmental state intervention.
Please reply.
I invite you to the discussion
Thank you very much
Best wishes
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Post Keynesian Economics (PKE) in comparison with ecological economics.... While PKE, like all macroeconomics, has failed to address environmental problems it does have many aspects which make compatibility with ecological economics seems feasible… Spash, C. L., & Schandl, H. (2009). Growth, the Environment and Keynes: Reflections on two heterodox schools of thought (No. 2009-01). Canberra, Australia: CSIRO Sustainable Ecosystems.
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The value of pollination of crop flowers (without cultivars) is estimated at 500 billion dollars. USA annually. Due to the intensification of production of agricultural products, including the use of chemical plant protection products, the number of pollinating insects, including primarily all bees, is decreasing rapidly. The number of bumblebees also drops very fast, and only these insects pollinate some crops. To limit the sources of this problem, people should limit the development of agriculture based on industrial production of arable crops, in particular in the areas of arable crop production for livestock and it is globally 3/4 of arable land.
Instead of industrial production of agricultural products, organic farming should be developed without the use of chemical plant protection products. Pesticides should be replaced by the introduction into the production of agricultural crops more resistant to viral, bacterial, fungal and parasitic diseases of cultivated plant varieties, which are created using modern biogenetic techniques.
In addition to the industrial production of agricultural produce (mainly for the purposes of maintaining livestock production, meat production), the global warming process is also contributing to the decline of insects, including pollinating insects. This is because, because many species of insects are very sensitive to changes in the temperature of the environment in which they live. In order to limit the sources of this problem, a person should proceed on a massive scale to reclaim industrial degraded areas in order to convert them to biological ecosystems similar to natural biological environments composed of many species of flora and fauna cooperating with each other.
In addition, the surface of natural habitats, natural biological ecosystems in which insects feed. It is caused by mowing meadows outside the city and grasses in the cities. Therefore, it is advisable not to mow lawns, put up insect houses, or remove rotting, rotting stumps in parks and forests. In some cities, flower meadows are planted and insecticides specially created for this purpose are placed in city parks.
According to observations of biologists, environmentalists are killed so quickly that in 100 years there will be no insects. If the pollinating insects die, then the plants will cease to produce fruit and seeds, many species of plants will disappear and there will be a serious problem with feeding mankind and many species of animals on Earth. Therefore, the problem is very serious. This is, in my opinion, the second most important problem to be solved in the 21st century, in addition to the problem of successive and faster global warming process. In my opinion, these are the most important global problems and challenges to solve numerous problems for humanity in the 21st century.
Do you agree with me on the above matter?
In the context of the above issues, I am asking you the following question:
How to protect pollinating insects from extinction?
Please reply
I invite you to the discussion
Thank you very much
Best wishes
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Campaigns... … We report the results of a task force of the North American Pollinator Protection Campaign (NAPPC) that examined potential effects of vector management practices on pollinators, and how these programs could be adjusted to minimize negative effects on pollinating species … Ginsberg, H. S., Bargar, T. A., Hladik, M. L., & Lubelczyk, C. (2017). Management of arthropod pathogen vectors in North America: minimizing adverse effects on pollinators. Journal of medical entomology, 54(6), 1463-1475.
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I was doing some geostatistical analysis (variogram+kriging) for a "presence only" type data in a species distribution modeling context. Since, we know that when estimating the (empirical) variogram, the attribute is basically assumed to be a realization of continuous random variables (although an attribute can occur in counts too). If the attribute is just the presence, and no sub-categories then all the values at all positions will be same (say 1, if we denote a presence by 1). Hence the variogram can not be calculated, not even the indicator variogram.  In some papers such as [1] and references there in,  a grid based approach was used. In this approach a grid of certain size (e.g. 10 x 10 m etc) was superimposed on the sampling area and the number of species inside each cell were counted. This constitutes a count/frequency table like data. In the other approach pseudo absences or background data were generated using some algorithm e.g. Maxent etc (see e.g. [2, 3]). The pseudo absences are generated taking many factors into account and stacked/combined with actual data. This is merely generating x, y coordinates and giving it an absence status (say 0s). The result is a binary data with two categories, presence 1 and absences 0.   
Now the questions that are bothering me are
1. For the grid based approach, what should be the optimal cell size? How to find it and decide it? How to proceed with variogram with kriging etc?
2. For pseudo absences/background approach, how many absences (as compared to actual data)? How to decide it? How to proceed with variogram with kriging etc?
Reference
1. Rossi, Richard E., et al. “Geostatistical Tools for Modeling and Interpreting Ecological Spatial Dependence.” Ecological Monographs, vol. 62, no. 2, 1992, pp. 277–314. www.jstor.org/stable/2937096.
2. Tomislav Hengl, Henk Sierdsema, Andreja Radović, Arta Dilo, Spatial prediction of species’ distributions from occurrence-only records: combining point pattern analysis, ENFA and regression-kriging, Ecological Modelling, Volume 220, Issue 24, 24 December 2009, Pages 3499-3511.
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Thanks for your interest. Look at my latest paper about dengue prevalence 2020. I have explained the method very well. Let me if you need help with your data. You can contact me at asad06@gmail.com.
Cheers,
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I am working with ENMeval package (Muscarella et al., 2014) in R to develope Species Distribution Models. This package developes SDM in raw Maxent output, but I need logistic or probability maps in order to conduct further analysis in ArcGIS.
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Hi Guillerme,
Thanks for the advice. I used conventional MaxEnt with the desire settings to derive predictive surfaces
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Dear all, I would like to start a discussion here on the use of generalised mixed effect (or additive) models to analyse count data over time. I reported here the "few" analyses I know in R for which I found GOOD (things) and LIMITS /DOUBTS. Please feel free to add/ comment further information and additional approaches to analyse such a dataset. Said that, generalised mixed effect modelling still requires further understanding (at least from me) and that my knowledge is limited, I would like to start here a fruitful discussion including both people which would like to know more about this topic, and people who knows more.
About my specific case: I have counted data (i.e., taxa richness of fish) collected over 30 years in multiple sites (each site collected multiple times). Therefore my idea is to fit a model to predict trends in richness over years using generalised (Poisson) mixed effect models with fixed factor "Year" (plus another couple of environmental factors such as elevation and catchment area) and random factor "Site". I also believe that since I am dealing with data collected over time I would need to account for potential serial autocorrelation (let us leave the spatial correlation aside for the moment!). So here some GOOD (things) and LIMITS I found in using the different approaches:
glmer (lme4):
GOOD: good model residual validation plot (fitted values vs residuals) and good estimation of the richness over years, at least based on the model plot produced.
LIMITS: i) it is not possible to include correction factor (e.g., corARMA) for autocorrelation.
glmmPQL(MASS):
GOOD: possible to include corARMA in the model
LIMITS: i) bad final residual vs fitted validation plot and completely different estimation of the richness over years compared to glmer; ii) How to compare different models e.g., to find the best autocorrelation structure (as far as I know, no AIC or BIC are produced)? iii) I read that glmmPQL it is not recommended for Poisson distributions (?).
gamm (mgcv):
GOOD: Possible to include corARMA, and smoothers for specific dependent variables (e.g., years) to add the non-linear component.
LIMITS (DOUBTS): i) How to obtain residual validation plot (residuals vs fitted)? ii) double output summary ($gam; $lme): which one to report? iii) in $gam output, variables with smoothers are not estimated (only degree of freedom and significance is given)? Is this reported somewhere else?
If you have any comment, please feel free to answer to this question. Also, feel free to suggest different methodologies.
Just try to keep the discussion at a level which is understandable for most of the readers, including not experts.
Thank you and best regards
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You haven't mentioned glmmTMB in your pro/con description, though you mention it in the title, so I'll add some pros for this package. The advantage of glmmTMB is that you can easily model complex / nested / cross classified random effects structures and you have different correlation options (like AR1 etc.).
Furthermore, you have various diagnostic options for glmmTMB as well, to quote from another thread:
You could use the "performance" package to calculate indices like r2() or icc() [1]. You can also check your model for overdispersion or zero-inflation with the "performance" package (check_overdispersion() or check_zeroinflation()). Furthermore, it can create diagnostic plots (which requires the "see" package for plotting capabilities [2]). Another, imho important, package in this context is "DHARMa" for residual diagnostic plots [3].
Finally, a comment on your model design: when analysing longitudinal data / repeated measurements, I'd suggest adding the time variable both as fixed effect and random slope. And I would treat "year" as continuous, maybe using a quadratic / cubic or spline to model time variation, so you would have something like:
model <- glmmTMB(y ~ x1 + year + (1 + year | site))
or
library(splines)
model <- glmmTMB(y ~ x1 + bs(year) + (1 + year | site))
As estimates for splines / cubic / quadratic trends are somewhat difficult to interpret, I suggest effects plots ("estimated marginal means"), which you can easily produce with the "ggeffects" package [4].
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My hypothesis is that the functional diversity of fish (responsible variable) increases until an optimum level of a gradient of habitat structural complexity (predictor variable), but decreases after that (which I have noticed in the graphic inspection). Then, I am really interested in this hump-shaped relationship.
To test this relationship, I will run a beta regression. In R, I have found two ways to include a second-order term in the model: I(x^2) and poly(x,2). The first one does not include the lower-order term, but the 'poly' function does.
According to Cohen, Cohen, West, & Aiken (2003), in order that the higher order terms have meaning, all lower order terms must be included, since higher order terms are reflective of the specific level of curvature they represent only if all lower order terms are partialed out.
First, I would like to know if this is a consensus and if I really cannot use only the second order term as a predictor.
Second, if I use a likelihood ratio test to compare models (e.g., only first order term vs. first and second order term) and the result is not significant, how can I choose the best model?
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Hi, Barbara
First of all, I appreciate your way of previously analyzing data and I endorse all Jean's suggestions. The way of including second-order terms are also the best I know so far.
For clarification, I have some minor perspectives.
First, to understand the statement of Cohen et al. to justify the inclusion of the lower-order terms when dealing with quadratic (or another polynomial) equations, it is easier to drawback to their basic form. Let's take a look at quadratic ones:
f(x) = a + bx + cx²
The lower-order term, in this case, is b, which is, by definition, the coefficient that defines the position of the curve on the X (horizontal) axis. If you remove it from your model fitting, you will declare that it is equal to zero and will force the inflection to occur at (0,y). In practice, your hump-shaped equation will peak when 'habitat complexity' is zero, which may be unrealistic. Thus, it is fundamental for model fitting that your b should be non-zero, and I must say negative, so the curve will trace rightwards.
Second, the likelihood approach actually provides you with some useful guidance. If not sure, confirm it through the AIC.
Best wishes,
Matheus
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We kindly invite you to submit a research or review paper to the special issue " Current Advances on Ecological Modeling for Sustainable Forest Management" of the MDPI open access journal Sustainability (Impact factor: 2.592). The submission deadline is February 28, 2021. The full call for paper can be accessed through mdpi/si/41888. We welcome any questions and discussions for potential submissions.
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Thank you Huiru. Looking forward to it.
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Nowadays, R play an outstanding role in Ecological research. It provides a free to use platform for innumerous statistical analysis and a huge collaborative community of developers and users that share codes and help each other with programming and statistical issues.
For many technical reasons, R is not a computational efficient language and, because R is not much popular among computer scientists, progress in computational efficiency is slow. Differently, Python is very popular among computer scientists, it experiences constant computational efficiency improvements and it is much more efficient than R in many aspects. Also, Python has gained some attention in Ecological research similarly to R.
So here is my question, with the increasing computational requirements of current analyses (e.g., Heavy Monte Carlos resampling procedures), will Python become as popular as R in Ecology?
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Python has more powerful libraries than 'R' for Data Analysis. So i will suggest Python.
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Dear colleagues,
I would like to request you that please suggest me any good book or tutorial that helps me to learn mathematical modeling from its base, so that I can create my own model for my system.
Generally I deal with biological and ecological models.
Please suggest me.
Thank you in advance.
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I suggest you to read the book
Mathematical Modeling: Models, Analysis and Applications
Chapman and Hall/CRCSandip Banerjee
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Which markets change the fastest or should change as part of the transformation of the classical economy to green economy?
In my opinion, these processes mostly concern or rather concern the energy market, the energy raw materials market, the market of eco-innovations, for example concerning renewable energy sources, the smart technology market, etc.
Do you agree with my opinion on this matter?
In view of the above, I am asking you the following question:
Which markets change the fastest or should change as part of the transformation of the classical economy to green economy?
Please reply
I invite you to the discussion
Thank you very much
Best wishes
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Absolutely agriculture and food industry. Hunger is an important motive.
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Hey!
I am not sure which model I might start using for the ecological modeling subject. In any case I wanted to ask which system to secure for myself, mac or windows? or maybe linux?
Thank you for sharing your experience!
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While I am at heart a Linux zealot, Windows is probably more flexible in that almost anything worth using open source wise can be targeted to Windows. As for system A is better than system B arguments, they are all bad if used poorly. I would identify packages you are interested in using and see how many of them are available for each platform and base your decision on that.
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I am going to build causal loop diagrams about obesity and participants are not English speakers (Arabic participants).
Can anyone suggest software that supports Arabic language?
THX
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Dear Alharbi, You can used Vensim. It is used with various languages.
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I have recently collected data on a study area divided into three sites and each site was divided into four categories and each category was subdivided into 5 transects. Each transects were also subdivided into 5 quadrats which were also subdivided into 2 subquadrats each.
The data collected were actually about natural regeneration of balanites species.
Considering that my design is a stratified sampling, I would any advise on the best method, procedure and statistical package for analysis of such data. I have tried Two-way anova with XLSTAT but i feel it is not clear to me.
Please, any advise is welcome.
Thanks in advance
Regards!
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Dear Prof. David Eugene Booth,
Thank you, also for the helpful additional information on multilevel regression.
Kind Regards,
Lana Dobrindt
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In what way should it develop and disseminate the concept of sustainable ecological development in accordance with the green economy formula in the 21st century?
In my opinion, additional taxation of enterprises in order to obtain funds in this way for the development of renewable energy, development of eco-innovations and reduction of environmental pollution is not the best solution. A better solution is to generate high economic growth based on the successively introduced model of sustainable green economic development implemented according to the green economy concept.
It is necessary to conduct reliable, honest, ethical business and social responsibility of business socio-economic policy while educating the public on the need to implement the necessary pro-ecological reforms in the energy sector as soon as possible by developing renewable energy sources, developing electromobility, efficient waste sorting technologies, improvement recycling, zero-energy construction, elimination of plastic from packaging and conversion to biodegradable plastics, etc.
Then, using such a reliable social and economic policy, it would be possible to extend the periods of host growth in business cycles to generate budgetary surpluses. In the situation of budgetary surpluses in the state budget, a significant part of them should be allocated for state financing of investments in large infrastructural pro-ecological projects, such as nuclear power plants, wind farms, solar panels based on photovoltaic panels and other based on renewable energy sources.
After many years of running this type of pro-ecological socio-economic policy, certain technologies that allowed for the development of ecological innovations and their implementation on an industrial scale will gradually become, and after their dissemination, production costs of certain devices such as household mini-power plants producing renewable energy on the basis of renewable energy. Energy sources will be available for most families living, for example, single-family houses or multi-family housing estates. On the other hand, by popularizing these pro-ecological technologies, companies that produce specific ecological products will generate revenues and profits.
In view of the above, in this way the new green economy will become profitable and will be a kind of a new epoch of the neoclassical economics model enriched with pro-ecological goals and functions. In this way, initially through a centrally planned system, through state intervention in a mainly market economy, through a national pro-ecological socio-economic policy, a new model of the economic system will be built after years, which will function objectively within the framework of sustainable green economic development.
Do you agree with me on the above matter?
In the context of the above issues, I am asking you the following question:
In what way should it develop and disseminate the concept of sustainable ecological development in accordance with the green economy formula in the 21st century?
Please reply
I invite you to the discussion
Thank you very much
Best wishes
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I agree with your argument, but I think that this development will not be possible, without the strong public control of energy, mineral, water or food resources. As long as governments leave these resources in private hands, and in accordance with the laws of the market, change will not be possible.
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The deadline for abstract submission to the ISEM 2019 conference in Salzburg is approaching on April 8. 
Please for any information please have a look to web site meeting
or contact me
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Totaly agree with with you Dariusz, we should work on it
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When measuring the variable importance, Olden(2015) proposed a new R2-based measure of relative variable importance after revealing methodological weaknesses of PSW and PCW.
Its basic steps is to:
  1. calculate original R2
  2. permute predictor variable to get a modified datasets
  3. train again under the modified datasets
  4. predict and calculate new R2
  5. The reduction between R2 measures the association.
Is there any need to train again after permutation? Or, Could I just make use of the original model weights to predict direcly under the modified datasets ?
P.S. I found the latter condition displaying in vi_permute function of vip R package.
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good question !
if you do not retrain, you are studying the sensitivity of your trained model to each variable and can conclude for the importance of the variables conditionally to your trained model
this is not necessarily this notion of "variable importance" you want to quantify : you may want to quantify a notion of variable importance for your problem, irrespective of the model you are using, or rather inside a model class but irrespective of a specifically trained model
a first step to get rid of the dependence on the trained model is then to retrain for each permutation
.
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Do you agree with my opinion that in the context of the projected acceleration of the global warming process, humanity in order to avoid a global climate catastrophe should take as a priority in the 21st century a change in the classical economy on the new green economy to develop economies according to the concept of sustainable pro-ecological development, including replacing classic energy sources based on the combustion of minerals for renewable energy sources. In addition, in economic processes should be implemented as soon as possible and possibly the largest funds programs for reduction of greenhouse gases?
How can you slow down the global warming process in the 21st century?
Please reply
Best wishes
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This issue can be solved only through social participation and understanding the importance of this crisis.