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Questions related to Cycling
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I am working on fabricating half-cells using LFP cathodes and MCMB anodes. I would like to know how the capacity of a half-cell can be predicted before performing the first charge-discharge cycle.
Specifically, if I measure the impedance of the half-cell prior to the first cycle, can the impedance data be used to estimate the capacity for the first cycle and subsequent cycles?
I would appreciate any insights, references, or experiences related to this. Thank you!
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To predict the capacity of LFP cathode or MCMB anode half-cells before the first charge-discharge cycle, you can use indirect methods:
Electrochemical impedance spectroscopy (EIS)
The impedance spectrum can reveal internal resistance and charge transfer properties. The charge transfer resistance (Rct) is often inversely related to capacity, but precise prediction requires calibration with similar cells.
Material characterization
Estimate the theoretical capacity from the active material weight and specific capacity:
- LFP: ~170 mAh/g
- MCMB: ~350 mAh/g
Factors like electrode composition, porosity, and uniformity also influence the practical capacity.
Open circuit voltage (OCV) analysis
The OCV before cycling can indicate lithium-ion intercalation behavior, indirectly correlating with capacity.
Other considerations
The solid electrolyte interphase (SEI) formation on the MCMB anode during the first cycle can consume lithium, affecting capacity. Freshly fabricated electrodes may also require initial activation.
Impedance data alone may not directly provide capacity but can serve as an indicator when combined with other parameters and experimental calibration.
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Hi all,
sorry for double-posting, but the "discussion topic" doesn't seem to get enough attention. We have recently started to work with Al single crystals for surface science experiments. Unfortunately, after a few cleaning cycles the crystal surface gets cloudy or "milky". Our typical cleaning cycle involves 1 kV Ar sputtering (ion current around 3-5 uA) x 30-60 min followed by annealing to 600-700 K (time varies, but typically not less than 15 min with somewhat fast ramping up and down, but no quenching). A high resolution XPS does not show any considerable amount of adsorbates or anything unusual whatsoever (some traces of oxygen which were there even for the mirror-like surface, some traces of carbon). Therefore, I suspect the crystal experienced some faceting/graining of the surface which resulted in that the surface has become mesoscopically rough. LEED spots have possibly become somewhat broader but this is really hard to estimate. Unfortunately, we had no time to perform AFM measurements on this surface. But it looks indeed as an annealing protocol is vitally important to keep the surface nice and well-defined. Therefore, I wonder if anyone else has experienced the same problem with Al (or maybe other crystals, too?) and/or knows how to overcome this issue? Maybe someone could share an annealing protocol or give a link to such a protocol if published? Tips and tricks? All meaningful opinions are welcome!
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We had a similar milky structure formation after sputter and annealing procedure of Pd(001) cleaning. The surface had a spiral texture as well. We heated this sample to 1200 degrees Celcius for 10 minutes by slowly raising the temperature all the while observing the sample, and noticed that at around 1200, the milky surface texture was gone and the smooth surface resurfaced.
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I want to perform a Galvanostatic Stripping/Plating (Galvanostatic Cycling) experiment using Gamry 3000 potentiostat. Under the Gamry framework, which Experiment do I choose, "Repeated Chronopotentiometry" or "Cyclic Charge Discharge"?
Doubtingly, I think it will be "Cyclic Charge Discharge," but my confusion now is how to set the parameters right.
I need help with how to set the parameters right if "Galvanostatic Stripping/Plating" is performed using "Cyclic Charge Discharge" under the Gamry framework.
if "Cyclic Charge Discharge" is not the Experiment to choose, kindly help me with the kind of experiment to choose and how to go about it under the Gamry 3000 Potentiostat. Thank you
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Most likely the best/simplest option is repeating chronopotentiometry. This is assuming you want to control the current and the anodic and cathodic currents will be the same throughout the experiment (not as each other, but that the anodic current will be the same throughout and the cathodic current will be the same throughout).
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Before starting the battery Charge - Discharge cycle I'm keeping the battery in rest ~24h (in OCV mode, no Charge/discharge only the measurement of voltage).
I'm getting a increase- decrease in voltage some times it is periodic in nature. Can any one have explanation to the Obs.
Electrolyte in use [2M LiTFSI in DME +0.35M LiNO3]
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ทงงงืงลงทททงมเ
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Does the cycle duration per cycle have any impact on the plating/stripping performance, overpotential and interphase behaviour of a zinc-air battery? For instance. If two similar cells are subjected to plating/stripping at the same current density but one at 2 hr/cycle and the other at 12hr/cycle, which approach will be more approprite?
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The duration of each cycle does affect the plating/stripping performance, overpotential, and interphase behavior of zinc-air batteries. A longer cycle time (e.g., 12 hours/cycle) may lead to smoother electrode surfaces and more uniform stripping, but may increase internal resistance and overpotential. A shorter cycle time (e.g., 2 hours/cycle) may result in lower overpotential and internal resistance but potentially poorer electrode surface stability. The optimal method depends on the specific application and requirements of the battery.
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I am using the High Capacity cDNA Reverse Transcription Kit from Thermo Fisher and the GeneAmp® PCR System 9700 thermocycler to synthesise cDNA. The method specifies the following protocol:
Step 1: 25°C 10 minutes
Step 2: 37°C 120 minutes
Step 3: 85°C 5 minutes
Step 4: 4°C Hold
but does not mention the number of cycles. What number of cycles should I set on the thermocycler, considering it only accepts values between 2 and 99?
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It is a single cycle, step 3 will inactivate the enzyme. As your thermocycler, you can set it to 2 cycles and end the program when the first is finished.
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meane defines any amplitude and then based on amplitude applies any time.?
for example, the amplitude for one cycle is 1s then in step defines 1000 s period time means 1000 cycle?
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Yes, it is possible to simulate high cycle fatigue (HCF) crack growth based on time in Abaqus, but not directly by defining amplitude and time. Abaqus doesn't have a built-in feature to directly link time to load cycles. To simulate high cycle fatigue (HCF) crack growth based on time in Abaqus, you'll need to use a cyclic loading step to define the amplitude and frequency, and then employ XFEM to model crack initiation and propagation. A suitable fatigue crack growth law, like the Paris-Erdogan law, should be applied to predict crack growth rates based on stress intensity factors. The analysis is iterative, with the crack geometry updated after each cycle and the simulation repeated. Key considerations include time step size, mesh refinement, material model, and convergence monitoring. While this approach is more complex than a direct time-based simulation, it provides a more accurate representation of HCF crack growth.
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I am trying to do rolling contact fatigue analysis of two internally contacting wheels. I have to create slipping between the contact surfaces of the rollers by adjusting their speeds. I have to then find the material response (elasto-plastic material) after 20 cycles. Is it possible to do this with direct cyclic analysis? If not, what is the easiest way to do this simulation?
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Adjust the rotation of wheel and then find out how much it takes time in one rotation, so... That's it.
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I have a collagen reinforced hydrogel speciemen, when preconditioing i noticed that the cycles shift to the right
why does it happen
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Presumably your vertical axis is force and horizontal axis is displacement and your forces are low enough to protect the sample from plastic deformation or failure.
If all cycles are performed to the same force, then viscoelastic relaxation or creep will cause migration of the minimum and maximum displacement. This effect is more pronounced in the first few cycles and diminishes with higher cycle numbers. This happens because biological tissues are not perfectly elastic.
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I need to design a refrigeration cycle from scratch to cool the inside of a sealed IP68 manhole that is buried underground. The condenser part of the refrigeration cycle must be buried underground as well and use the ground for cooling.
I need about 3000 to 3500 BTU of cooling inside the chamber. I need to calculate who the size of the condenser will be that will be buried 0.5m to 1m underground.
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Ernest Rogers Thankx for the feedback. I have looked into this but for our purpose it won't work. We install traffic controllers and other active equipment in the manhole. The manhole is made from SMC and has a volume of about 06m^3 after the equipment is installed.
With my testing a 200W raised the temperature of the manhole from 20°C ambient to 52°C. I need to maintain a temperature of 30°C with a 800W heat source.
I have designed a custom aircon unit that will work but as you said the condenser is ridiculously large to such an extent that I don't trust my calculations.
The nature of where these manholes are installed, we cannot have anything exposed above ground due to theft. Everything must be underground.
Any other assistance would be much appreciated.
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I have my libraries for NovaSeq sequencing. They have good looking peaks, but also a high molecular weight something on the right of the upper marker. I tried a second size-selection (double sided bead clean up) to get rid of those larger fragments, but it did not work out. Any advices? Should I try a o1/2 cycles PCR, or just leave those HMW in the libraries?
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I have met the same question, can you give me some advice?
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Why heating-cooling-heating cycle used as compared to normal heating cycle to calculate glass transition temperatures of food protein and starches ?
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Dear Sahil Nain, this is done generally to exclude extra transitions accompanying the targetted one. These extra transitions may be due to residual stresses, different macromolecular structures arrangements (especially in the case of proteins) in the amorphous phase, and others. By heating-cooling cycles, the effects of such artifacts are reduced if note completely removed. My Regards
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Is there any data in the current literature (from the last 10 years) that reports how much biomass is stored in the wood of the cacao tree? Is there any estimate of how many cubic meters of wood a cacao plant produces? I have been searching the literature but have not found anything yet. This information is crucial to determine how much biomass a cacao plantation yields at the end of its cycle.
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This manuscript has some information.
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How can I obtain the reflective spectrum in the green wavelength region using a silicon photonic crystal that has been anodized under the following conditions:
Voltage of 10V
Twenty cycles
Cycle period of one second
Minimum current of 1 milliampere I am unsure about the maximum current setting?
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The electrolyte used in the previous question is hydrofluoric acid with a 3:1 ratio of ethanol.
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In the pursuit of school improvement, identifying areas that require enhancement is crucial. Needs-based analysis provides a systematic approach to this by collecting and analyzing relevant data to make informed decisions. Action research further supports this process through continuous cycles of planning, acting, observing, and reflecting. School leaders, as reflective practitioners, play a vital role in implementing these strategies to foster a culture of continuous improvement.
Discussion Question
  • How have you utilized action research in your school improvement efforts? Can you share specific examples of how you’ve identified areas for improvement and the impact of your interventions?
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Шановний колего. На моє переконання, таким дієвим інструментарієм є системний моніторинг якості знань здобувачів освіти.
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If a string vibrates at 256 cycles per seconds then counting 256 cycles is the measure of 1 second. The number is real because it measures time and the number is arbitrary because it does not have to be 1 second that is used.
This establishes that the pitch is a point with the real number topology, right?
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Since I wrote this question I realized that frequency is not a velocity but a potential energy, which like 25 mph, is also defined on a time interval.
The string frequency is not a real valued function, it is a scalar output by a functional. The functional takes the equation of motion as input and outputs a number. The number is an extremal given by the calculus of variations. When the string is plucked, it quickly zeros in on the frequency with the lowest energy as a solution to the calculus of variations.
This is important in music theory because we want the frequencies on musical instruments to be algebraic numbers, not sine wave. That is, frequecy is real but constant and cannot change as long as the instrument is in tune.
This explains how the frequency is constant right up to the moment it stops. Velocity cannot go to zero at a point.
The frets on guitar are functionals that take the string tuning function as input and output the frequency.
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Hi,
I am in the first year of a Ph.D. program in mechanical engineering, and I am studying the topic of post-combustion CO2 capture from a combined cycle gas turbine. I struggled to find research gaps and novelty. Please can you suggest some research gaps and novelty
?
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The somewhat wet exhaust from the combined cycle power plant is acidic, thus requiring an alkaline agent to convert the CO2 to carbonates and water. There is not much research on cost-effective methods of reacting an alkaline source (found in nature, or readily available from a waste stream) with acidic, "wet" CO2. Expansion Energy LLC has received patents for a "VCCS Cycle" which uses alkaline coal ash or "red mud" to neutralize flue gas containing CO2. Natural sources might be better, especially if the alkali source is not toxic, as is coal ash and red mud. Are there any agricultural waste streams that are alkaline?
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Could anyone have reable data the cycle number of LFP (and NMC) Li-ion battery with depth od discharge, DOD for electric vehicles.
Thanks in advance
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You can read this article for publicly available battery dataset with DOD.
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Hi all,
I have a crack in plate which extend under fatigue load using XFEM . I can measure the length of crack. My problem is how to get number of cycles to draw curve between length and number of cycles
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From result .. check step/frame
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I have been using Direct Cyclic Approach using XFEM method to find Fatigue Crack Growth, but I am not able to find da/dN vs Delta K from Abaqus.
How we can find number of cycles taken to grow particular crack length?
And in the step module we are mentioning the number of cycles, but that is not properly related to the original result which we are getting from experiments.
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I have tried so many times to run GCD on a Zn-ion battery. V2O5: MWCNT: PVDF (8:1:1). It had poor cyclability; it was just 10 cycles, and after that, the cell was short circuited. The specific capacity was increased slightly until it peaked , then dramatically dropped until 0 mAh/g. I used 2 M of ZnSO4 in water as an electrolyte. And also, I use coil cell CR2032.
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May be poor charger and charging frequently
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I have written USDFLD subroutine for phase transformation to define the field but i am facing difficulty in giving input in ABAQUS (property module) for heating and cooling cycle. like conductivity and elasticity plasticity is following different path for cooling and heating cycle.but how to initialize this in ABAQUS. the part of subroutine which i want to incorporate in ABAQUS are given below....
IF (STATEV(1) .LT. 3.D0) THEN
IF (DTEMP .GE. 0.D0) THEN
FIELD(1) = 2
ELSE IF (DTEMP .LT. 0.D0) THEN
FIELD(1) = 1
END IF
ELSE IF (STATEV(1) .EQ. 3.D0) THEN
FIELD(2) = 3
END IF
return
end
where, SDV(1) is the flag for the temperature ranges
(T < B1 = 0, B1 < T < B3 = 1, B3 < T < molten = 2 and
molten < T = 3)
DTEMP= TEMP(1) - TEMP_OLD
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Is there a way to define cooling/heating rate in a thermal step? Mehdi Aliehyaei
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Comment les enseignants de mathémattiques du cycle primaire conçoivent-ils leurs évaluations? Quelles conceptions ont-ils pour le concept d'évaluation?
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À partir d'une grille d'élaboration d'une évaluation préétablie qu'ils essaient de respecter d'une façon formelle.
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For which types of polymers, the crystallization peak in heating cycle of DSC test can be observed and for which types cant? In another word, when this exothermic crystallization can be observed in the heating cycle (also in its cooling cycle) and when just in its cooling cycle?
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Mostly, the crystallization peak appears during cooling. However, you can see the peak both during heating and cooling for polylactide (Polylactic acid).
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I need to plot cycle number vs. capacity with multicurrent density. please let me know if my steps are right or not as the below picture
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It seems correct,
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I have a cathode electrode (5 x 5cm) on the femoral triangle and an anode electrode (5 x 10cm) on the gluteal fold.
We are doing repeated high-intensity cycling followed by repeated Wingates. We noticed that the stimulation electrodes become less adhesive due to sweat accumulation. We have put medical tapes on the borders of the electrodes, which seems to improve this.
Does anyone have any recommendations/tips on how to improve this?
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Try pre wraps or Coban wraps maybe?
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In 35 cycle at 94degree C, 54degree C and 72 degree C by mistake in place of 54 degree I did 5.4 degree C and it ran for almost 25 cycle. Can i restart the PCR and what will happen if i did?
Thank you!
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You can restart the pcr and the taq will be fine so you should get your expected bands. Unfortunately the low annealing temperature will allow the primers to anneal all over the genome so the pcr will be messy with additional bands. If all you want is a band of the right size to show the existence of a product then it may work ok but dirty but generally I would start again
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The mid-stance or mid-support has been defined as much as a phase or event within the race cycle. However, it did not identify a specific definition or a biomechanical indicator that would allow it to be identified objectively.
Ciacci, S. et al (2010) identifies this event as the transition between braking and propulsion (BP-PPTRANS), concluding that a standardization of kinematic criteria is required for the evaluation of BP-PPTRANS.
Ciacci, S., Di Michele, R., & Merni, F. (2010). Kinematic analysis of the braking and propulsion phases during the support time in sprint running. Gait & posture, 31(2), 209–212. https://doi.org/10.1016/j.gaitpost.2009.10.007
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Thanks for your interesting question, Felipe. I guess that midstance is a phase during running where the lower limb's function is to support the body as it moves from the loading phase in early stance to the unloading phase in late stance. There are several gait events that occur during the midstance phase, and which could be used as a single, specific descriptor of midstance. These would typically include, for example, a peak vertical GRF (although some athletes have a higher vGRF at impact), the knee at its most flexed, a 'flattened' foot position and, as you mention, the transition between braking and propulsion.
I think that all of these have merit as objective measures of 'midstance' given that which one is most useful depends on the measurement system being used (force plate, videography, pressure pad, optoelectronics), or the aim of the study. For example, I have previously used the braking-propulsion transition to define midstance in race walking, which is particularly useful in that event given the abnormal movements used ( ) although I have also used 'a visually chosen position where the athlete’s foot was directly below the hip, used to determine the “vertical upright position"' in a paper on race walk judging because, although more subjective, this was felt the most ecologically valid regarding what the human eye would consider to be midstance ( ).
In terms of analysing running in competitive situations where force plate data are unavailable, I have used horizontal coordinate values via manual digitizing to determine midstance (defined as 'the instant during stance where the athlete’s foot center of mass was directly below the CM' in both road running: and track running ).
These gait events are unlikely to describe exactly the same instant during midstance (it is more difficult to be precise in any case with video data) but are likely to be very close in timing during running and reflect some of the varied methods used in gait analysis. I hope this is helpful.
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Hello everyone!
I am working on PVDF-based membranes for dye rejection and have encountered a recurring problem: after each rejection cycle, the membrane flux increases rather than decreases, although the membrane's separation efficiency decreased from 99.8% to 91% up to the 14th cycle. What could be causing this, and how can it be addressed?
I am looking forward to help from experts in the relevant field regarding this problem!
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Repeated cycles can lead to cracks or enlarged pores which decrease rejection and increases flux. adding some plasticizers or blending could help
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I have been trying to get a good band for a while. I am using the Phire Tissue Direct PCR Master Mix (Thermo Fisher) and my DNA sample is from a mice tail.
I am using a TRPM8 Primer (This is the 3rd primer that I am trying):
- Forward 5' to 3': GGT CAT GTT CAC GGC TCT CA
- Reverse 5' to 3': TTA GAT GCC CCA GTC CAC AC
I did the gradient test for the primers and I chose 64.4C. After setting that temperature I ran a new PCR (Fig.1), before preparing the PCR samples I always checked the amount of DNA, and for 20ul of reaction I used 2.5ul of my DNA sample solution. I got a band but it does not look big enough. So, I tried again (Fig. 2) and this time I used a gel at 2% and increased the annealing cycles to 45 (usually I set up at 40 cycles), for this DNA sample solution I used 2ul for 20ul of reaction.
What can I do? I am planning to use my PCR product for Sanger sequencing.
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I think that your samples are simply over amplified. and combined with the likelihood that you are amplifying too much dna you are getting minor non specific bands amplifying strongly.
I would measure the od of your dna and use 25ng ( who knows how much dna is in 2.5ul?) and run 30-35 cycles ( 45 is far too many cycles) and include a no template control (water instead of dna) to check for contamination and if you are still getting multiple bands then run a DMSO gradient up to 8%dmso or use a higher annealing temperature.
It may be that your dna contains pcr inhibitors and using less dna will work much better
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Hello,
i am writing an assigment about endurance, where i am cycling for 1 month (cca. 16 tranings 2 day training successively; 1 day rest) and as a bonus i am trying to find colleration with weather and my cylcling time, avg., max. heart rate... (For example when the temperature was above 25 degrees my avg. HR was incereased...) Sadly weather isnt as simple as saying 20 degrees celcius is hot and 10 is cold and it becomes complicated with humiditity, wind, sun... The lap i am cyciling basically negates the effect of wind (for example if wind is blowing one way it helps me in the first half and its harder the second half) and geting accurate wind measurments is basically impossible. Still i want to know if there is an index, a formula that would accurately portray the effect of temperature and humidity? 30 degrees in 90% humidity with the sun out is not the same as 30 degrees with 30% humidity, so i was personally thinking of just putting this into "weather" units meaning 30 degrees and 90% would be 120 weather units, while the latter would be 60 weather units, in this case i would atleast have a more accurate scale. Maybe something like sun being out and shining on me for the whole ride would be a (multiplier)*2. I dont know, so i am askig if there is a formula that already connects atleast temperature and humidity. Thank you.
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The Climate Index is used to simulate climate anomalies at different space-time scales. There is a study by Ortiz Bultó (http://rcm.insmet.cu/index.php/rcm/article/view/315) that can help you better understand this term and provide tools of interest.
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Dear Sirs, Could anyone please help me with the interpretation and the physical meaning of my results? I attached the EIS spectra of my supercapacitor (as prepared, after gentle electrochemical activation) and electrochemically aged. I noticed the huge differences in the Imaginary component of impedance. How can it be explained?
Is it some sort of electrochemical reaction taking place at the interface at my bias voltage (0 V, amplitude 10 mV)?
Electrodes are made of activated carbon, and an aqueous redox electrolyte is introduced.
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Characterize residual charges, before and after cycling.
Relate charges, losses and the electrical and mechanical properties of materials.
Make sure your observations are original.
Don't follow models that don't apply to all observations: yours and others and do not use the foundations of physical chemistry..
Sincerely
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I am trying to get a new Biobase BKQ-B120L autoclave to work however it does not go through its cycles.
It will start up and go to about 110C and then remains there untill the ERR alarm sounds. Biobase not much help anybody having the same issue and was able to solve??
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Sorry I forgot to mention it remains on heating and does not switch over the STE!
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Hi everyone,
I hope you are all well.
I currently work on ATD-GC-MS for running VDA278 standard, but I experience the error message "Extended Trap Des. Equilibrium" on my ATD panel. As the error message occurs, we would not have peaks in my chromatography (just like a blank test). After I checked it, the problem is on the column flow rate could be unstable before trap heating.
Nowadays, I run n-alkanes analysis with Tenax TA sorbent tube (methanol be the solvent, liquid solution directly spiking 1¬2µL on Tenax TA tube). Trap is packed by Tenax TA as well. The most tricky portion is this error always occur around two weeks after PE engineer maintenance. (While engineer here, the machine is running well. However, after running some tubes, the error occurs unpredictably) The system no leak be detected, air-water looks really nice.
So I'm wondering if anyone have the same issues before and willing to share your experience for trap desorption equilibrium extended.
These parameters for which I'm running now:
350ATD
Temperature(C)
Tube: 280
Transfer Line: 280
Valve: 280
Trap Low: -30
Trap High: 280
Trap Rate (C/s): 99
Times (min)
Tube Desorb: 20
Trap Hold: 20
Trap Desorb (Desorb2): 1
Purge: 1
GC Cycle: 85
Pneumatics (mL/m)
Inlet Split: 44
Outlet Split: 19
Tube Desorb: 40
Column: 2
Col/Trap Desorb: 2
GC Column: HP-ULTRA 2 50m, 0.32mm(Diam), 0.52 µm(Film)
GC Temperature: 40C for 2min, 3C/min to 92C, 5C/min to 160C, 10C/min to 280C holding 10min
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Could it be that your cold trap packing material is moving around and sometimes creating channels? Sometimes it is packed firmly and sometimes it is loose.
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Hello...
I'm trying to electrodeposit at -1V with CoCl2 in aqueous solution. Is there a suitable supporting electrolyte? When measuring CV(2M KOH, Pt wire, Ag/AgCl), the redox peak decreases after about 10 cycles. If you look at the photo above, the redox peak is clearly visible, but when you cycle it, the peak disappears as shown in the photo below.
Please help me...
Thank you
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Hello scholars,
I am looking for a list of journals with scope in computer science, information technology, or education that do not charge a publication processing fee and are recognized by the Higher Education Commission (HEC) under categories W, X, and Y. Additionally, I would appreciate information on the paper acceptance rate, publication cycle, and any other relevant details for each journal on the list.
If you have any recommendations or resources that can help me, find such journals, please share them here. Your expertise and insights would be greatly appreciated.
Thank you!"
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Certainly! Here is a list of journals with no publication processing fee that are recognized by the Higher Education Commission (HEC) under the W, X, and Y categories:
W Category Journals (No Publication Processing Fee):
  1. International Journal of Innovative Computing and Applications
  2. International Journal of Business Intelligence and Data Mining
  3. International Journal of Technology Enhanced Learning
  4. International Journal of Automation and Control
  5. International Journal of Computational Science and Engineering
X Category Journals (No Publication Processing Fee):
  1. Pakistan Journal of Scientific and Industrial Research
  2. Science International
  3. Pakistan Journal of Statistics and Operation Research
  4. Nucleus
  5. Pakistan Journal of Botany
Y Category Journals (No Publication Processing Fee):
  1. Pakistan Journal of Zoology
  2. Pakistan Journal of Agricultural Sciences
  3. Pakistan Veterinary Journal
  4. Pakistan Journal of Agricultural Research
  5. Pakistan Journal of Pharmaceutical Sciences
Please note that the HEC categories and journal listings are subject to periodic updates, so it is always recommended to cross-check the HEC website (http://www.hec.gov.pk/) for the most current information.
Good Luck!
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What if amount of hydrogen increases after every cycle. and in my experiment, it increases very high after every cycle.
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I don't know what is the cycle. Just guessing. The active catalyst forms in the course of the reaction.
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Hi All,
I am trying to amplify mitochondrial 16S gene for marine snails (Calliostomatidae) and other vetigastropods, but I only get primer dimers or nothing on the gel. These primers have worked previously in my lab and in numerous other publications. The DNA concentrations are low, but they have amplified for COX1 using the Folmer universal primers.
I am using the Palumbi 16S universal primers (Forward: CGCCTGTTTATCAAAAACAT and Reverse: CCGGTCTGAACTCAGATCACGT). We bought new primers in December 2023. I resuspended them and have tried multiple aliquots. I've tried gradients 45-55 and 55-65 and a touchdown PCR starting at 59 (-1 C/cycle for 10 cycles) and final annealing at 48 for 20 cycles. I've tried the standard, ammonium, and combination 10x buffers. All reagents are from Apex (not a hot start taq), except for the dNTPs.
Our usual protocol is: 2.5 uL of 10x standard buffer, 1.25 uL of MgCl2 (50mM), 0.5 uL of dNTPs (10mM), 1 uL of both primers (10uM), 0.2 uL of taq (5 units), and 2 uL of DNA. This does work for Folmer. Denaturation at 95 C for 4 min, 35 cycles of 95C for 30 seconds, 50C for 30 seconds, and 72C for 30 seconds, and final extension at 72 for 10 min.
I'm desperate and would love to hear any suggestions/tips on how to fix this!! I also unsuccessfully tried ethanol precipitation to increase the DNA concentrations, so tips on that would be appreciated too. Thank you
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Dear Tiffany
I checked in Primer BLAST. Primers can indeed amplify the snails. See first two results:
Products on target templates
>MF979281.1 Calliostoma unicum isolate DYLKL2 16S ribosomal RNA gene, partial sequence; mitochondrial
product length = 586 Forward primer 1 CGCCTGTTTATCAAAAACAT 20 Template 1 .................... 20 Reverse primer 1 CCGGTCTGAACTCAGATCACGT 22 Template 586 ...................... 565
>NC_068865.1 Tristichotrochus unicus mitochondrion, complete genome
product length = 585 Forward primer 1 CGCCTGTTTATCAAAAACAT 20 Template 10736 .................... 10717 Reverse primer 1 CCGGTCTGAACTCAGATCACGT 22 Template 10152 ...................T.. 10173
But Tm is 52 and 62 for fp and rp by primer blast and 59 and 68 by Thermofisher's online multiple primer analyzer.
Additionally, not a cross dimer but the forward primer forms dimer very easily (Thermofishers online multiple primer analyzer).
See the results:
1 dimer for: f
5-cgcctgtttatcaaaaacat->
||||| | | |||||
<-tacaaaaactatttgtccgc-5
You said you used 50C as Ta. I have not done pcr for the snails ever, but I may say what I may have tried:
1. Increase the Ta, as increased Ta will decrease the chance of self dimer of forward primer (will be become unstable). May be, use 55-60C.
2. You use 1.25 mcl of 50mM MgCl2 in 25 mcl reaction, this leads to final 2.5 mM. Usually the PCR buffer has MgCl2 to make final 1.5 mM. Thus the sum if 4 mM. Increased MgCL2 increased the stability of duplexes, eg primer dimer. So either dont add the MgCl2 (if the PCR buffer is known to have it). Or if PCR buffer doesnt have it, add only to make final 1.5mL, eg. add 0.75 mcl per 25 mcl reaction volume.
3. If primer dimer persist, you may want to decrease the concentration of primers to 0.5 mcl or 0.25 mcl per reaction.
4. All these methods (1-3) decrease chance of primerdimer but also decrease chances of amplification (though slightly lessly), so increase the cycle number, if you do 1 or more of these changes.
Hope your experiments go well and you may get better answer. Paul Rutland is a retired Oxford? lab tech and he loves to answer such question in Researchgate. He may give you answers, much accurate.
Paul Rutland (researchgate.net)
Divya
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Hi follow virologists,
I'm new to the virology field and I'm eager to understand how freeze/thaw cycles affect virus culture fluid titers. I've noticed that while some viruses show increased titers with multiple freeze/thaw cycles, others don't. I'm curious about why this happens. Also, I've seen that for viruses with an initial increase, the titer eventually drops after a certain number of cycles, why? I am sure it has to do with the different life cycles of different viruses, but I'm looking for a general explanation since I'll be dealing with a wide range of viruses. If it's too much to cover here, I'd appreciate any recommendations on where to find relevant literature.
Thanks a bunch!
CK
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Because according gto structure of virus e.g. envelpe viruses titer decrease while non envelope one titer increase
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Hello,
I am quantifying bacteria exposed or not to a certain chemical at specific time points.
How can I compute the results in a relative manner? That is: what is the formula for a ∆∆Ct analysis of bacteria?
Relative quantification is normally given for a gene of interest over one or more reference genes by calculating the cycle difference between the exposed and not-exposed genes and then between GOI and REF.
For bacteria, would these be acceptable:
Ct = Ctt – Ct0
∆∆Ct = ∆Ct (exposed) – ∆Ct (control)
where t is a specific time (0,1,2,4,24 h post-exposure) and 0 is t=0. The fold increase would then be 2–∆∆Ct.
Is this correct?
Thank you
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The quantitative cycle is proportional to the bacterial density...
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Hi all in looking into create a growth mathematical model in correlation to Kelvin cycle and I was wondering whether it makes sense, from a physiological point of view, to consider that the production of oxygen and the fixation of CO2 can be considered as independent processes, because O2 is produced as part of the light reactions, while CO2 fixation follows the Calvin cycle kinetics.
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Thank you!
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The housing crisis here in Ireland is an increasingly major problem, is modular construction the solution?
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Good afternoon,
I would suggest that the housing crisis is not a unique problem to Ireland but a global one were the intensity of it may vary from country to country and between regions in the same country due to a variety of factors. Is the Modular Construction the key to unlocking the housing opportunities - I doubt. I would suggest that that my contribute towards short term relief of the problem, but it is potentially questionable on the longer term. There are number of instances where Modular Construction has been possibly successfully used on a short term basis to alleviate the housing shortage after wars and disasters, but if you look over a period of time the long term outcomes might be different one, e.g. use of experimental technologies that do not allow for ease of alteration and of a limited life span, use of construction methods that potentially increase the risk during earthquakes, floods or fires, construction systems that are difficult to insure and so on. Rather than focusing on Modular Construction it might be beneficial to look into the problem a bit wider: public vs private, not for profit - profit, etc. Even if Modular Construction can deliver all of the needed housing in the world, if people cannot afford to buy it or rent it, Modular is unlikely to be able to resolve the problem. The same probably apply in the allegedly reported instances of house builders starting developments on sites but tightly controlling the production output to manage supply and demand, and main the property prices.
With Best Wishes
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Hi ALL,
I am using a pair of primers to amplify a region in my gene of interest from cDNA samples. The cDNA samples are extracted from tissues of mouse of different ages. The gene is known to have decerased expression level when mouse ages. However, I did not see any change of the RT-PCR amplicon band intensities on agarose gel, indicating no change for the transcript level. I did not saturate the PCR products as I tried different cycle numbers (from 23 to 30 cycles). What could be the possible reasons? Should I design new primers targeting a different regions in my gene? Thank you for the help!
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Sequencing amplification product is always a good option to determine the specificity of the PCR. In addition, you should at least run an end-point PCR with a low number of cycles for an appropriate house-keeping gene as control for your input.
Could it be possible that your primers also amplify genomic DNA, which basically always contaminates your RNA unless you conduct an DNAse treatment step. If so, design exon-exon spanning primers.
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A magazine I read asked readers if they'd consider a brain implant that improves mental function. Here's my answer. Do you think my ideas are feasible?
Not until they can implant it without surgery. BITS - the binary digits of 1 and 0 - are the basis of AIs (Artificial Intelligences). Why can't the subatomic particles composing everything in the universe each be constructed from trillions of BITS? The electrical wavelengths could be made sufficiently tiny by using overtones (wavelengths that complete many cycles for each cycle in a familiar pulse).
If the implant and the brain are digital, the chip could merely be downloaded and installed. Programmed correctly, that chip could add or delete anything and everything we choose by emulating computers’ copy/paste function to add things; as well as their delete function, to remove things (these feats make me wonder if people really can walk on water and perform other miracles).
We'll also be able to transfer the brain's contents into a clone, another body, or an android - infinite times if necessary - and thus say hello to immortality. When quantum mechanics and General Relativity are united into quantum gravity or the Theory of Everything, we'll have access to everything in space and time.
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If microchips can be "grown" using organic semiconductors. then yes an AI quantum computing unit can be grown in the a living thing. Perhaps we should try it out with trees first.
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What are the characteristics of Indian monsoon rains? And what are the conditions?
India's monsoons are of greatest concern to agriculture, economy and the livelihood of billions of people in the country.
South Asia. However, little attention has been paid to the possibility of distinct subseasonal episodes in the locked phase
The annual cycle of the Indian monsoon. This study objectively addresses this gap by using the self-organizing map (SOM) method
Six distinct sub-seasonal phases are classified based on 850 hPa wind fields. Each sub-seasonal stage is between 23 and 90 days.
The Indian summer monsoon (ISM) consists of three subphases: ISM onset, ISM peak, and overall ISM exit.
It accounts for 82% of the annual rainfall. The three sub-stages represent rapid progress to the north, dominance and
Gradual retreat of southwesterlies from mid-May to early October. The winter monsoon also includes three
sub-phases (autumn, winter and spring), recognizable by the latitude of the Arabian Sea high pressure ridge and hydrological
The conditions of this study suggest two compact indices based on regional winds in the north and south of the Arabian Sea.
Measure the winter and summer monsoons respectively. These indicators show development and rotation
Six stages are derived from SOM and can be used to monitor and predict sub-seasonal monsoons. Spring and the start of the ISM
Episodes are highly susceptible to the combined risks of drought and heat wave, while the greatest flood risk occurs during
The peak phase of the ISM, the autumn phase, reflects the peak season of tropical cyclones over the Arabian Sea and the Bay of Bengal.
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Dear Prem Babu
B.Tech (Chemical Engineering), M.Sc (Ecology and Environment), M.Phil (Environmental Sciences), M.B. Retired Executive from DGM (Production and Process) Dangote Fertilizers Nigeria and Sr. Manager National Fertilizers Ltd. India at Institute of Engineers (India)
India
Greetings and respect to my dear teacher and professor. Thank you very much for your complete answer. Abbas
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Hello, the image below is my cyclic voltammogram for a redox reaction with a metal and a ligand. Can you help me explain why I see two reductions and two oxidation cycles, respectively? What can it imply?
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Based on the cyclic voltammogram you shared, the observation of two reduction and two oxidation peaks suggests that there are likely two different redox processes occurring for the metal-ligand system under study. Some possibilities include:
  1. Step-wise reduction/oxidation - The metal ion center undergoes reduction by accepting electrons step-wise at two different potentials, showing two cathodic peaks. Correspondingly, there are two oxidation states generated that can each get oxidized back at separate anodic peaks.
  2. Different coordination environments - If the ligand can bind the metal center in multiple modes (e.g. uni- vs bidentate), each metal-ligand coordination geometry may exhibit its own reduction and oxidation characteristics leading to two sets of peaks.
  3. Dinuclear/polymeric structure - If the metal centers and ligands are assembling into dinuclear or oligonuclear complex structures, each metal site within that assembly may display quasi-reversible reduction and oxidation responses.
To distinguish these and obtain more definitive structural information, you could systematically alter experimental parameters like metal ion concentration, ligand ratio, pH levels, scan rates etc. and monitor the voltammetric response. Complementary structural characterization techniques (NMR, ESI-MS) would also help elucidate the origin of the dual redox behavior you observe.
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In some GCD tests, after several hundred cycles, the specific capacity of the supercapacitor has increased. How is it possible? What happens chemically?
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here are a few possible reasons why the specific capacitance of a supercapacitor could increase after several hundred charge-discharge cycles:
  1. Activation of electrode surface area - The active surface area of the electrodes (e.g. activated carbon or graphene) may become more accessible and ion-accessible after repeated charge-discharge cycling. This can expose more micropores and surface area over time and increase capacitance.
  2. Improved wetting - For supercapacitors with porous electrodes and liquid electrolytes, the electrolyte penetration into fine pores can improve gradually. Better electrolyte access to surface area enhances the capacitance.
  3. Redox reactions - Some pseudo-capacitance effects involve fast surface redox reactions, which could catalyze and improve in rate/yield with cycling. Products may also deposit onto surfaces, increasing reactive sites.
  4. Self-healing effects - Small amounts of decomposition products from the electrolyte can deposit within defects on porous carbon over cycles, essentially "healing" them and improving properties.
  5. Equilibration - The electrochemical and morphological changes occurring initially during cycling may simply take some time to equilibrate before reaching a maximum steady capacitance response.
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why the colombic efficiency of supercapacitor device initial decreases then increase for 1000 cycles of charge discharge?
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Thank you for your valuable answer. This was really helpful for me!
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What is the microplastics cycle?
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The microplastics cycle refers to the movement and distribution of tiny plastic particles within the environment. These particles can originate from various sources such as the breakdown of larger plastic items, microbeads in personal care products, and microfibers from synthetic clothing. Once released into the environment, microplastics can be transported by air and water currents, leading to widespread distribution.
The cycle of microplastics involves their deposition in various environmental compartments such as soil, water bodies, and even organisms. They can be ingested by aquatic life, potentially accumulating in the food chain and causing harm to marine ecosystems. Microplastics can also be transported back to the atmosphere through processes like evaporation and wind erosion, contributing to their global dissemination.
Understanding the microplastics cycle is crucial for developing effective strategies to mitigate their environmental impact and protect ecosystems and human health. Efforts to prevent plastic pollution and develop sustainable waste management practices play a key role in addressing this environmental challenge.