Science topic
Cornea - Science topic
The transparent anterior portion of the fibrous coat of the eye consisting of five layers: stratified squamous CORNEAL EPITHELIUM; BOWMAN MEMBRANE; CORNEAL STROMA; DESCEMET MEMBRANE; and mesenchymal CORNEAL ENDOTHELIUM. It serves as the first refracting medium of the eye. It is structurally continuous with the SCLERA, avascular, receiving its nourishment by permeation through spaces between the lamellae, and is innervated by the ophthalmic division of the TRIGEMINAL NERVE via the ciliary nerves and those of the surrounding conjunctiva which together form plexuses. (Cline et al., Dictionary of Visual Science, 4th ed)
Questions related to Cornea
I am interested in showing innervation in the anterior chamber of the eye, in live mice. Is there any dye I could use?
I'm working with FTIR investigating corneal cells, and need to know what's the functional group of epithelial cells of the cornea.
Hi All,
I am trying to generate the 3D corneal surface from the Zernike Polynomials. I am using the following steps, can anyone please let me know whether they are accurate
Step 1: Converted the cartesian data (x, y, z) to polar data (rho, theta, z)
Step 2: Nomalised the rho values, so that they will be less than one
Step 3: Based on the order, calculated the Zernike polynomials (Zpoly), (for example: if the order is 6, the number of polynomials is 28 )
Step 4: Zfit = C1 * Z1 + C2 * Z2 + C3 * Z3 + ......... + C28 * Z28
Step 5: Using regression analysis, calculated the coefficient (C) values
Step 6: Calculated the error between the predicted value (Zfit) and the actual elevation value (Z)
Step 7: Finally, converted the polar data (rho, theta, Zfit) to Cartesian coordinates to get the approximated corneal surface
Thanks & Regards,
Nithin
I wanted to know how I could count the number of nerves in cryosections of the cornea after staining with Beta III tubulin. What software is available for automatic or manual counting?
Hi all,
I am trying to calculate the curvatures of the cornea and compare them with Pentacam values. I have the Zernike equation in polar coordinates (Zfit = f(r, theta)). Can anybody let me know the equations for calculating the curvatures ?.
Thanks & Regards.
Nithin
I am doing IHC with mouse cornea and after adding Prolong Gold Anti-fade mounting media, there are now bubbles on the slides. How can I remove the bubbles?
Thank you!
I want to Immunostain retina vasculature, so I'm looking for a protocol to embed the retina in wax, do I need to embed and section the whole eye or do I have to remove the cornea and the lens and embed the eye cup and is there any tips on how to handle the retina during the embedding????
Hello everyone.
Are there any resources explaining how Pentacam calculates Zernike coefficients of the cornea?
I am transplanting a polymer (Parylene-C) coated structure in the anterior chamber of the eye and expect it to reside on the iris, however, almost all of them get adhered to the cornea and not the iris. Is there any eye-physiology-related explanation to that?
Bom dia!
O meu artigo " Perfil epidemiológico dos doadores de córneas e doadores de órgãos de cinco hospitais do Estado do Espírito Santo, Brasil " está cadastrado com o ano de 1969, mas o ano correto é 2016. Como eu faço para corrigir?
Att.,
Flávia Marini Paro
Hi everyone,
Could someone please explain how I can reconstruct the cornea shape using elevation data from a topography system? The data is in rectilinear coordinates and depicts the difference in elevation with respect to a reference sphere.
At first, I believed that simply adding the height of the reference sphere to the data at each location (x,y) would suffice. However, the attached article made me ponder by citing complicated methods like Zernike polynomials.
Is there anything I'm overlooking?
Let me know your thoughts.
Thank you,
Payman.
hi guys, I am doing experiments with cornea epithelial cell line. In my experiment, I have to wash away the residual drug in cells with PBS, and I use 96 wells plate(flat bottom). After the washing procedure, I always find a lot of cells are washing away along with the drug. The intensity of the cell is about 80%-90% in the well before I do the experiment. And the number of losing is hard to control so it affected the experiment results. I want to ask if there are any tips or suggestions for the washing procedure on 96 well plates? Thank you, guys.
I’m working on an image processing project with aim of developing A method to differentiate between healthy and diseased cornea. I have images taken from SHG microscopy for the collagen bundles in the human corne. I have used GLCM and I obtained the correlation, energy, homogeneity and contrast of each image but the results are not good enough to use them as a solid evidence to classify the images. please can anyone suggest for me any other method that can be used to classify collagen bundles image that can be done witthin a short time or a method to enhance my glcm results.
Thank you in advance
For how long period, the cattle remains infective after getting the Pink Eye and when can the animal be safely return to the herd?
There are so many different rodent OCT instruments and rodent fundus cameras on the market. Generally, the market is dominated by a Phoenix Lab Micron III/IVsystem however there little information about what performance you can expect from the different instruments. I was thinking of writing a review of the pros and cons of different OCT/Fundus machines so I'm looking for the OCT images of the mouse retina and cornea as well as fundus images to try to understand which instrument having the best resolution on the market. However, it is naturally quite difficult to have all the instruments tested. (I have data for Micron III, IV, OcuScience iVivo). Also, welcome your thoughts on OCT/Fundus user experience. It may result in the review paper, but too early to say. If you provide the OCT/Fundus images I'll contact you if we try to use it in the review.
In a primary congenital glaucoma child who has a cloudy cornea that makes it impossible to do a goniotomy what factors (clinical/demographic) influence one to make a decision between a trabeculotomy or a combined trabeculotomy/trabeculectomy?
I am aware that they do these combined procedures in some regions of the world. This would greatly help decision making especially in countries without any data on outcomes.
what is the best machine learning method , to segment and extract the length , angle and the size of collagen bundles pictures obtained from the human cornea?
I am analyzing the tissue damage to the mouse cornea tissue after incubated a kind of medium. The protocol is
1) mouse cornea was incubated in the medium for one day
2) embedding the cornea with OCT compound and snap frozen in liquid nitrogen
3) cryosection
4) HE staining
The control is naïve cornea that embeded with OCT, cryosection and HE staining. In fact, the thickness of incubated cornea should be thicker than the naïve one (3-4 times) from the optical coherence tomography. But the thickness of the incubated and naïve cornea from cryosection HE staining is similar. What the problem is? Should I use paraffin section? Why the thickness of incubated cornea is changed after cryosection and HE staining? Many thanks!
With increasing COVID-19 infected cases worldwide, people around the world are practicing strict personal hygiene against infection. Alcohol-based hand sanitizer was one of the best sellers, but will it cause eye injury?
What if it is accidentally split into the eyes?
Will prolonged exposure to the evaporated alcohol cause eye problems?
Have you even encountered such an injury in your life or medical practice?
Hi, everyone,
I am looking for a cornea topography (elevation based) source file. Anybody know where can I find cornea topography data to be loaded and opened on a personal computer?
Thank you in advance.
Payman
How are the patients with severe damage in corneal or retinal surfaces being treated currently? As far as I understand, for such implantation the shortage of donor, poor graft survival and allergenic rejection of natural graft are some of the biggest problems. I am curious if any synthetic implant could successfully pass through FDA channel? Please share if any knowledge on this. Thanks!
What is the role of atropine here?
Hi everyone, I have a question with regards to the cell lysis protocol.
I'm considering to do RNA/protein extraction from cornea cells. As a start, we realised that the cornea morphology between keratoconus patients and normal controls are quite different (in terms of corneal thickness, cell structure, etc.).
As the overall corneal structure are more elastic from other tissues due to the presence of fibroblasts (keratocytes) in the stroma layer, where can I find suitable protocols on cornea tissues/cells lysis to refer on? And are there any other suitable methods to lyse these cells for various downstream applications such as gene expression or western blot?
I was wondering whether it is possible to image transparent tissue like cornea, with dark-field imaging technology? I'd appreciate any help :)!
Refer to
It offers some evidence that the concern I express here has some basis. Spray-able after-shaves containing alcohol (or worse!) can deliver undesirable material to a very sensitive part of the body - the corneal surface. Unlike alcohol in the mouth, there is no copious saliva in the eye to dilute and wash down undesired substances. Even if washed down by tiny amounts of tears, they can do further damage down the nasal tract. Calling after-shave solutions external applications and ignoring the risks they pose could be dangerous.
Can anyone share articles or reviews on the following topics:
a. Management of Posterior Synechiae after Triple procedure (PKP, Cataract extraction and IOL implantation)
b. Management of iris adhesions to the graft-host interface
c. Complications of triple procedure
We are investigating how the structure changes after riboflavin and UV illumination for Cross-linking process. Will the structural characteristics (molecules or collagen inside cornea) after CXL process turn to be smaller or bigger.
Which device would you use as a gold standard for verification of the project relate real keratometry of the eye. I want to verify the anterior, posterior and the real power, Sim K of the posterior, anterior and true values.
I was thinking about Casia 2000 SS-OCT from Tomey but they do not have FDA. So, what would be the best reference for the prototype software: maybe Pentacam or GALILEI from Ziemer.
Kind regards,
Bart
I am working on a Diagnostic tool to help ophthalmologists diagnose Eye Diseases (like Keratitis) . The idea is to upload a picture of the eye and let the python program isolate the features / Lesions from the uploaded picture and present it as output for the Opthalmologist to consider.
Hi everyone!
In my project we've been grinding equine corneas with mortar and pestle + liquid nitrogen followed by the Qiashredder column and RNeasy kit for RNA extraction. The problem is that we've had very low concentrations (from 4 to 70 ul/dL) of RNA (using Nanodrop). Anyone has had similar issues and knows how to troubleshoot that?
Thank you so much!
There are various techniques for in vitro culture of various tissues and also cornea.The success for corneal culture across world is still in primitive stage as far as I knew. Then what is your method and at what stage you are.
Hi There
Could anyone suggest the most common practice to preserve rabbit corneas for at least 2 weeks? suggestions would be well appreciated.
Thanks
Manish
Hi all,
I have perfused mice with 1% PFA and post fixed eyes in 1% PFA then removed cornea and lens and put the eye cup (containing retina) in OCT for cryosectioning. Th problem is that the protocol requires the retina to be fixed for short time and that makes it challenging to embed it in OCT as the retina is still soft. I am thinking to sections the whole eye without removing cornea and lens. Have you tried sectioning mouse eyes with lens on? Do you have any recommendation to avoid retinal breakage whole I remove the lens for OCT sectioning?
Thank you
Assraa
Samples: cornea of cadaverous donors.
Methods: Procedure for corneal manipulation.
Time of culture.
Culture mediums.
There are most common causes of eye infection in sheep especially corneal opacity.
As we know that variation exists between dimensions and morphology of cornea in different strains of mice. Even the susceptibility and resistance to some group of pathogens has been observed (eg. C57BL/6 susceptible to Pseudomonas aeruginosa and resistant to Staphylococcus aureus etc.). Considering different factors (corneal diameter, thickness, cost effectiveness and handling etc) which mice strain do you prefer for studying Keratitis?
I am conducting my research on cornea and I read about endothelial cells. It's very interesting to know that corneal cells are derived from neural crest. I have developed little bit about it. But I want to know the logic. Thanks
This optic scheme (attached) is supposed to be free from spherical aberrations in output point B. A is input.
I simulated the case, but aberrations was found, is it right ? or I missed something ?
Blue lines is spherical mirrors, Middle blue circle is curvature center both same for lenses.


Many studies, even studies published in impact journals include the two eyes of the same patient. This is not a good practice, since these observations are not independent observations, because both eyes are usually similar. Including the two eyes of the same patient increases the size of the sample, and narrows confidence intervals, making easier the task of achieving statistical significance. However I think that some methods can correct to a certain extent the bias generated by including both eyes. Anyone knows where can I find information about how to address inter-ocular correlation?
Most birds can see ultraviolet light. This capacity is possible because birds have a forth type of cone that is sensitive to this wavelength and because their ocular media allows this light to enter the eye. Apparently the cornea and the lens of the birds is similar to our cornea. Which histological differences can explain such a different behavior?
Hi,
I was performing MTT assay in my lab hood. Accidentally, I did not turn off germicidal lamp (UV-C 254 nm) in the hood and I worked for about 25 minutes. I was wearing latex gloves and my hands and arms were completely covered in my labcoat and also my winter coat. My face however was uncovered and I was wearing my glasses. There was hood glass between the lamp and myself and the distance between my face and lamp was as usual as in normal airflow hoods.
This happened 4 days from writing this post. After overexposure, I did not see any symptoms like burns in my cornea or erythema so far. I am really scared as to what fate awaits me after 6-12 months as they say this can lead to skin cancer.
I would be really grateful if anyone could suggest on what I should do and what fate awaits me in the next one or two years.
Regards,
Pratik
I want to transfer a cornea from a donor to a receiver.So I would like to know which temperature is the best condition to keep a cornea in the box.Is there any factors that affect the cornea.
I am trying to see the growth of macrophage after corneal injury in whole flat mounts of cornea. I would really appreciate if you could suggest me the best protocol on that.
Hi, everyone, I'm culturing human corneal fibroblasts now. I found that their proliferation seems not very well. You could say that they don't proliferate ever. I use Dulbecco's Modified Eagle Medium (high glucose) with 10%FBS ,and 1% antibiotics to culture them. Do I need to add growth factors?
Does anyone know a CRO that can perform alkaline injury on the eye of rabbits or rats?
Currently in Singapore Eye Bank, we practice passive warming of corneas at room temperature (19-21'C), and we are having high percentage of cell drop-out or incidences of unable to get decent cells after 2-5 hours of warming.
Would the idea of active warming (using thermo incubator at 34-35'C) to optimize the endothelial function improve specular evaluation results?
Any study or publishing regarding this issue?
For an upcoming animal trial. Just the name of the reference would be sufficient.
Regarding corneal decellularization, Most of the people uses chemicals like hypotonic, hypertonic solutions and enzymes or both.Otherwise some are using physical methods like HHP .
I am planning to see the number of neutrophils and macrophages in cornea after chemical burn. Would it better to flat mount the cornea or just making the section for doing immunohistochemistry? I would really appreciate your suggestions.
With cryosectioning of tissues radial, tangential and cross section of eye, how is the cut made on human cornea tissue?
Hi all,
I'm currently doing some experiments to observe corneal stroma of chicks and have some troubles with sectioning methods. I have been trying cryostat sectioning in -20 C, after 4%PFA fix->10,15,30% sucrose for a day. And tissue thickness is 12um. Problems during this method are,
1. Cornea seemed to be too weak and became flipped during cutting, especially central cornea part. I only need central area, so this makes me quite troublesome.
2. After sectioning, i move to normal temperature room just to check through light microscopy, and found that tissue experiences dramatic change during 'melting', specifically stroma.
3. When staining through toluidine blue, tissue experiences huge change. Stroma is highly altered in its shape.
I wonder, will it be better to try another sectioning methods (eg.paraffin embedded) ? But, i found there are some literatures that using cryostat and seems cornea is quite good looking. So if anyone has tried this to observe cornea, can you give any advices?
Thanks,
Jeremy
I am trying to use the electrospun polymer for transplanting stem cells to injured corneal surface of rabbit in LSCD model but the problem is suturability of this sheet. The electrospun polymer is not that much tough so that is could be sutured. So I am looking for the alternative option to stick the cell-polymer sheet over the cornea. That may be bioadhesive or other contact lens if there is available. Please give me the suggestion to resolve the problem of putting the cell-polymer sheet over the rabbit cornea (LSCD rabbits).
I want to use a contact lens for rabbit for transplantation of stem cells to the corneal surface with substrate. i want to put a contact lens which can also able to diffuse gas (oxygen and CO2). I want to use this lens just to avoid the problems due to blinking. Please suggest me from where I can get this. Please also suggest me, what other methods would be possible. As I am also not able to suture the cell-substrate sheet. I also would like to get information about other ways to put the cell-substrate patch over the cornea other than chemically defined bioadhesive. Please do help in this. Thanks!!!
Apart of that her IOT was 21,9 mmHg right eye and 23,0 mmHg left eye.
Is there any study or experimental data available, showing differences in corneal biomechanical properties between females and males?
Hello, I am trying to model the impact of change in temperature on the diffusion of water particles (from a material mostly composed of water) in to air. The relationship between the diffusion coefficient and temperature suggested by the Stokes-Einstein equation is based on the model of motion of a spherical particle of diffusing substance A in a viscous liquid continuum B. Can I use the same relation for the opposite direction (i.e diffusion of water molecule in to air)? Can you suggest if any other relation would suit my problem better (like Wilke and Chang, or other http://www.thermopedia.com/content/696/).
Thanks for your help,
Shwetabh Verma
I am planning to perform some steps to improve the ocular surgery visualisation. A binocular microscope is almost all we have now. Blurred cornea, cataract, intraocular bleeding and many reasons make us to fight for better insight.
Is anyone interested in ?
I'm facing problems regarding extraction of RNA from corneal tissues acquired post DSEK. I have been using Qiagen RNA extraction Kit so far. But the conc. is as low as 2ng/ul with 260/280 2.23 and 260/230 1.86. Does anybody have any better method(s) or kit to extract RNA from such tissues?
Please I need some help with possible differential diagnoses and/or management plan. Fundus photo of an active 47year old male African, Right eye. VA=CF, exotropia approx. 30o. Lens, cornea, vitreous are all normal. Good pupillary reaction with mild RAPD, IOP 14mmHg. History of decreased vision since childhood. No history of trauma, diabetes, HIV, or hypertension. The left eye is normal.


Can anyone suggest a way to rapidly fixate ex vivo corneas soaked in a water soluble dye (riboflavin), such that the dye can not continue to migrate within the tissue? A cryostat would be quick enough, but once sections are cut and the tissue thaws the dye would presumably be able to move again? Thawing tissue to chemically fixate would carry the same problem. Any suggestions gratefully received.
We extract the full eye from a mouse, and then fix it in 4% paraformaldehyde immediately after extraction. After punching a hole in the cornea, we fix it with 4% PFA in 20 degrees for 4 hours, and then we put the eye into a sucrose gradient 10% 20% and then 30% sucrose overnight. The tissues are put into OCT medium cryomold and sectioned onto superfrost slides. Will these tissues be acceptable for In Situ Hybridization? Do I need to refix before pretreating the tissues?
I have a problem with this - the image has more cells so that makes a problem when I enhance or segment.
I have been using a procedure for mouse eye fixation in paraformaldehyde. We remove the mouse eye after sacrafice. We immediately put it in 4% pfa for 30 minutes. After that we punch a hole in the eye, we do not remove the cornea or lens. After fixing for 4 hours, we put it in 10% sucrose for an hour, 20% sucrose for an hour, then 30% sucrose overnight. We then put the fixed eye into a cryomold filled with OCT mixture without sucrose. We freeze the tissue on dry ice. Sometimes the retina is perfectly sectioned, other times, it is extremely detached and has cells missing or shrunken. Any advice would be helpful. Thanks
I've got this image after enhancement and when I segment it I've got problem because it didn't segment in a good way and some weak nerve will disappear and this images content cells that effect on my work.
Do you have any idea? I just need the nerve to appear after the segmentation.


Fig. 14-4 on page 268 of the current edition of Adams and Victors textbook “Principles of Neurology” states " A lesion at the level of the oculomotor nucleus results in homolateral third-nerve paralysis and homolateral anesthesia of the cornea”.
Is this an error and if not, what structures are located in that area that could cause homolateral corneal anesthesia?
I am looking at the expression of macrophages in corneas of mice. is there a standard procedure for sample preparation for IHC/ immunofluorescence ?
Thanks
Hello,
In one of the experiments that am doing I need to stain for M1, M2 macrophages in mice tissue (cornea). I would like to know whether or not I can successfully stain M1 and M2 macrophages using antibodies against CD 206, PD-L2 (M2) and CD68+/CD80+ (M1) ?
Is it possible further narrow down the staining to find M2a, M2b and M2c type mouse macrophages ?
Thank you
Does someone have a detailed protocol for Proteoglycan extraction from ocular tissue such as cornea or sclera? or have any experience with PG extraction? List of supplies and chemicals are also needed. thank you
Corneal Asphericity and Zernike coefficients
Based on our past years’ experience in training clinicians, we feel that following a proper workflow can really help them improving their dry eye practice. Most frequent questions in workshops are still:
How do I know that this is a dry eye?
Which tests are the appropriate ones, what are they telling me?
What do I need to recommend making the patient feeling better?
An iPad APP answering these questions was developed over the past months based on our research and current literature. We are pleased to report that the new dry eye management APP had passed all evaluation tests and now is going to be tested in clinical practice as beta-version. Such launch of the Dry Eye Tool Box APP will be soon.
What do you think about it? www.dry-eye-tool-box.com
We are running a trial and may like to collaborate.
I am trying to analyze small deflection of bovine cornea under uniformly distributed load. Cornea is modeled as a thin shell in the literature and for small deflections its load-deflection relation is given as linear, however we are measuring a non-linear response even for small deflections. Can someone help me to derive/understand the theoretical formulation of load-deflection of cornea? We believe it is third order polynomial function.
A patient sees 6/9 in each eye and complains of seeing haloes and dry-eye-type symptoms. He has a minor degree of lens opacity and the microcystic corneal dystrophy. How would colleagues manage this patient? Would they proceed to cataract surgery in the first instance?
It does not matter how old or how recent those are, and whether its use was therapeutical or not.
Does hyperosmolarity change the surface curvature of the cornea?
Is there any extra advantage of prescribing oral anti-fungal agents in addition to topical anti-fungal drops in patients of fungal keratitis? If yes, then what is the indication, what is the best agent for this purpose and the correct dosing and duration?
Patient aged 71, compensated diabetes, worked and got infected in Iraq after a severe pneumonia. Bacteriology revealed Klebsiella, E. coli and S. aureus.
For example: Corneal 0.49Mpa and Contact lens 1.1 Mpa = what combination modulus?
We have identified a layer at the back of the human cornea that has implications for patients undergoing corneal transplant surgery. We need help to test its biomechanical properties as it might influence the curvature of the back of the cornea.
There are few studies which compared the GAT with and without fluorescein. What is the method used by them in either group?
There are several ocular and systemic diseases common in consanguineous population. One way to appears to reduce the morbidity and mortality is by early detection and management. Genetic counselling may be another modality. There may be some role of premarital screening to identify carrier status. What are other methods to reduce or prevent this increasing problem?