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Coral Reef - Science topic

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How can instruments and systems for the conservation of nature, the biosphere, the highly biodiverse coral reef ecosystems of the seas and oceans be improved?
The ongoing process of global warming is also causing, among other things, an increase in the temperature of the seas and oceans. This increase in temperature and the increase in the scale of water pollution in the seas and oceans is causing the death of coral reefs, which have formed over millions of years and have developed the most biodiverse ecosystems of the seas and oceans.
In view of the above, I address the following question to the esteemed community of researchers and scientists:
How can instruments and systems for the conservation of nature, of the biosphere, of the highly biodiverse coral reef ecosystems of the seas and oceans be improved?
What is your opinion on this?
What do you think about this topic?
Please reply,
I invite you all to discuss,
Thank you very much,
Best regards,
Dariusz Prokopowicz
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Polluting shipwrecks are the ticking time-bomb at the bottom of our oceans
"At the bottom of the oceans and seas lie more than 8,500 shipwrecks from two world wars. These wrecks have been estimated to contain as much as 6 billion gallons of oil, as well as munitions, toxic heavy metals and even chemical weapons.
For decades, these wrecks have largely lain out of sight and out of mind. But all this time, their structures have been degrading, inexorably increasing the chances of sudden releases of toxic substances into the marine environment.
In parts of the globe, climate change is exacerbating this risk. Rising ocean temperatures, acidification and increasing storminess accelerate the breakdown of these wrecks...
How many of these wrecks pose a threat to people’s safety, to coastal communities and to the environment? What can be done – and why haven’t we done it sooner?...
Mapping the problem is the key.
Work by researchers such as Paul Heersink have drawn together different datasets to help visualise the scale of the challenge. Yet these figures, and the position of dots on maps, may also give a false sense of certainty...
There is an ongoing global push to improve our mapping of ocean space under the auspices of the Seabed 2030 project, which is looking to reach a universal resolution of 100x100m. That means one “pixel” of information would be equivalent to about two football pitches. This will be transformative for our understanding of the ocean floor, but will not reveal the detail of all those things that you could hide within those two football pitches (which includes quite a few wrecks)...
Advances in subsea drones known as Autonomous Underwater Vehicles (AUVs), which are fitted with an array of sensors to measure the seabed and detect pollutants, could help enhance our knowledge about the locations of wrecks, what they’re carrying and their state of deterioration. AUVs can provide relatively cheap, high resolution data that produces fewer emissions than a comparable survey campaign conducted from a large research vessel...
Action is needed now, driven by a robust regulatory and funding framework, and technical standards for remediation. A global partnership – codenamed Project Tangaroa – has been convened to stimulate that framework – but political will and financing is required to make it a reality.
Through targeted archival and survey work, and by sharing data and ideas, we can chart a course to a future where the sea is not a place where we ignore things today that will threaten us tomorrow..."
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This organism was first encountered during a recent ecological survey of the coral reef in the northern of the South China Sea. Despite consulting a multitude of sources, but I'm still not sure what it is.
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Maybe it's Nephtheis fascicularis (荔枝海鞘)?
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This organism was first encountered during a recent ecological survey of the coral reef in the northern of the South China Sea. Despite consulting a multitude of sources, but I'm still not sure what it is.
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Thanks for your response, Md Yousuf, but they were photoed under seawater in the coral reef environment.
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What are the best practices for selecting environmental variables in ecological niche modeling for coral reef fish species?
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A priori selection based on a mechanistic explanation of a species niche "preferences" is advised. Selection procedures via p-values (backward and/or forward selection), dropping "insignificant" variables, AIC (or BIC) are not proper statistical approaches for selection and are all somehow "related" so result in problematic conclusions see the sources (https://royalsocietypublishing.org/doi/10.1098/rspb.2023.1261, https://www.tandfonline.com/doi/full/10.1080/09332480.2018.1549817 or see F. Harrell's book
A niche could be defined as some abstract multivariate space constructed by univariate vectors under which a taxon was observed. I see no need to select a variable perse, because a niche does not imply "causality", unless defined otherwise ofcourse. If you have too many variable you could start by addressing why a particular variable would be of interest for a species occupation of this space. Ofcourse in ecology we often deal with indirect relations so one could "explain away" every relation and by some model selection it tends to become tricky and we likely end up with a spurious relation (e.g., https://www.sciencedirect.com/science/article/pii/S0022316622012196).
I would keep it straightforward and focus on those of "direct" relations. I never read something about reef fish, but I assume reef structure, algae biomass and specific food source or oxygen, might be of interest. Iam much more interested in your knowledge and ideas of how such variables shape the niche given a qualitative good introduction en mechanistic explanation then why a "mindless" model wold select it.
Best,
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This is the third time I've tried to start a discussion about global warming. The first time my topic ended up in the “acid” section, the other two times in the “Black Sea” section. I continue to try to frame the discussion in the "global warming" thread.
Each time I lowered the level of discussion.
My presentation on this topic does not open on the site and this is the reason for opening the discussion.
Along with global warming, there are other reasons for changes in sea levels. One of these reasons is a change in the morphometric characteristics of the World Ocean due to the “fallout” and “melting of carbonate snow” in the thickness of the bottom sediments of the World Ocean. The direction of this continuous process is regulated by the acidity of the waters of the World Ocean, which in turn depends on the ratio of the partial pressure of carbon dioxide in the atmosphere and the surface layer of the ocean and on the intensity of the release of acidic fluids from the lithosphere in the bottom and deep layers of the World Ocean.
Carbon dioxide dissolving in water increases its acidity, and acidic waters dissolve carbonates contained in bottom sediments.
Maps are provided (http://earthtrends.wri.org/updates/node/245) reflecting the dynamics of changes in the content of aragonite in the bottom sediments of the World Ocean over the past 230 years. The volume of aragonites became smaller. The ocean became deeper. The water level in the ocean has dropped.
This is written about in my monograph “Modern changes in the level of the Black Sea as the basis for the strategy of construction development of the coasts”.
Look how much CaCO3 can be dissolved by acidic sea water in a coral reef. This photo is from my discussion "Why does a bay in a coral reef coincide with a submarine discharge of acidic groundwater?".
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There are minerals that are formed as a result of carbon dioxide dissolving in water. In the ocean, one calcium ion removes a molecule of carbon dioxide from solution. CaCO3 minerals fall to the bottom. They can be formed chemically and biologically. Such formations include aragonites (from Wikipedia - Aragonite is a mineral, one of the natural polymorphs of calcium carbonate (CaCO3).) The most widespread geological rocks are shells (northern regions) and corals (tropical zone).
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Looking for species identification, the first Fungia (1) is from Florida, USA while the second Fungia (2) from is Egypte.
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and send to my Email : ason@go.buu.ac.th, if possible
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Dear All,
I have LISS IV satellite image. I need to do the coral reef mapping for the Lakshadweep lagoon area. Regarding this, Please suggest any algorithm or methodology do this.
I really appreciate any help you can provide.
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1. Obtain high-resolution Landsat 8 or LISS-IV satellite images of the Lakshadweep lagoon area.
2. Use image processing software such as ERDAS Imagine or ENVI to pre-process the satellite images and create a classification map.
3. Use supervised classification and manually classify the satellite images into different land cover types such as coral reef, seagrass beds, mangrove forests, sand flats, and deep sea areas.
4. Use an accuracy assessment technique such as the Kappa Coefficient to evaluate the accuracy of the classification map.
5. Use a geographic information system (GIS) to create a map of the coral reefs in the Lakshadweep lagoon area.
6. Use a digital elevation model (DEM) to create a 3D map of the coral reefs in the Lakshadweep lagoon area.
7. Use GIS to analyze the coral reef mapping data and generate various reports.
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I guess artificial coral reefs don't grow well in some places. In other places they grow even worse. I would be glad if I see an example of an artificial reef that is not inferior to the natural one. According to my observations, on a natural coral reef, areas of rapid development coexist with dead reefs. The distance between such sites can be less than 100 m. I have observed when a flowering coral reef has degraded in less than 10 years. Attached is a photo of the reef.
I propose to discuss a quote from the article "When are payment for ecosystems services suitable for coral reef derived coastal protection?: A review of scientific requirements": "Payment for Ecosystem Services is an emerging tool intended to solve a range of ecosystem management inefficiencies, by linking conservation action to payment. Such schemes have not been tested to our knowledge, for coral reef derived coastal protection, which is a key Ecosystem Service for many nations bordered by tropical coral reefs.".
The subject of discussion is that if we introduce a tax, then we must have effective mechanisms for influencing the situation. These mechanisms should guarantee its improvement. There are currently no such mechanisms. We do not even have a complete list of the causes of reef degradation. If there is no way to restore the reef with a tax, then there is no reason to collect such a tax.
First, we need to consolidate scientific research and develop an effective mechanism. While it is not available, it is advisable to use the experience of Egypt in creating reserves in the most flowering areas of the reef. The meaning of creating a reserve: "I know little about the ecosystem, about environmental conditions, about transboundary transfers .... For this reason, I" freeze "the situation so as not to harm."
Where am I wrong?
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Coral reef restoration has been with us for some time. If you are looking at examples where coral reef restoration has worked please have a look at the work that has been done by the Coral Guardian in Indonesia:
There are many other projects, some with innovative approaches, that create initial 'artificial reef' over an area of coral reef that has been damaged. In Bali, they are using coconut shells to rear corals ((PDF) Coral diversity on artificial reef from coconut shells in northern Bali, Indonesia (researchgate.net), in Lombok they are using Biorock technology (Biorock Reefs Bounce Back After Coral Bleaching: Gili Trawangan Video And Photos By Delphine Robbe - Global Coral Reef Alliance) with success. There are other examples. This being said, it is ESSENTIAL that in all areas where this type of coral reef restoration work is taking place great emphasis has to be placed on maintaining good environmental water quality by managing all anthropogenic activities in a sustainable manner. Maintaining good water quality is very important.
To my knowledge there have not been any large-scale (>km2) coral reef restoration projects using artificial reefs, but many small scale (at 100s of m2) projects have been successful, at least within a short period of time.
I am attaching a list of papers that anyone interested in coral recovery will find useful.
Cheers.
Tom
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The Atlantic Ocean has minimal coral reef area (Map 1) and minimal fish and shellfish coral biodiversity. Could this be a consequence of the maximum hydrothermal activity of the Atlantic Ocean? Look at the map of deep water acidity [CO32-] SW to the ocean (Map 2).
How true is this?
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I want to give a fragment from the discussion "The location of coral reefs in space most often has a linear shape. What is it connected with?". Here about the straightness of the bottom topography in the shallow areas of the tropical zone.
«It is generally accepted that for the formation of a coral reef, clear water is necessary (photosynthesis of zooxinela is impossible in muddy water) and warm water (in cold water, a polyp cannot form an external carbonate skeleton). In addition, it is desirable to have a solid substrate for fixing the polyp at the bottom and sea currents that bring food to the polyp are desirable.
In tropical seas, these conditions are everywhere, but coral reefs are not formed everywhere. The reason is that the tropical zone of the ocean is oligotrophic. For the first time, we have included in the list of necessary conditions a fluid dynamic process in tectonic faults of the earth's crust. You can see the link: https://magazine.neftegaz.ru/articles/geologorazvedka/443409-flyuidodinamicheskie-anomalii-kaspiyskogo-morya/.
This led to the need to formulate a new paradigm for the formation of coral reefs. We did this in the second volume (Spatial patterns of coral reef formation) of the monograph "A new paradigm of accumulative relief formation in shallow areas of oceans and seas" (2021).
It was shown for the first time that in the oligotrophic tropical zone of the ocean, solutions of phosphates and nitrates enter the bottom layer only along tectonic faults. Without these substances, phytoplankton cannot form. Without phytoplankton, zooplankton (polyp food) cannot arise. We used the theory of structure formation of the solid shell of the Earth.
Block sizes change discretely (… 35x35 km, 70x70 km, 140x140 km, 280x280 km, 560x560 km, 1120x1120 km …). The orientation of the block structure is discrete (0° and 270°; 17° and 287°; 35° and 305°; 45° and 315°; 62° and 332°; 77° and 347°).
Solutions of nitrogen and phosphorus enter the oligotrophic waters of the ocean only along straight faults. Linear fault directions can only have six azimuths. Coral reefs only form along faults. Let's apply a new coral reef formation paradigm to a coral reef in the Amazon Delta. I have attached a diagram of this reef and a satellite image of the Amazon Delta with our additions. (Scheme of a coral reef from an open Internet resource).
The grid of tectonic blocks is like a chessboard. The white squares are up and the adjacent black squares are down. On the satellite image, I put a yellow line (approximate position of the coral reef). To this line, I leaned a square with dimensions of 1120x1120 km with an azimuth of 35° and 305°. The line of the coral reef and the northeastern boundary of the tectonic block coincided.
The correctness of drawing a tectonic block on a satellite image has several practical confirmations. The arrow in the image shows a tectonic fault, which manifested itself in the configuration of the ocean coast. The bay has an azimuth of 35 degrees. In the north-west direction, at a distance of about 560 km, you can see a similar bay (tectonic fault). This is natural, since the tectonic block 1120x1120 km is divided into 4 blocks. The adjacent block is shown in red. It is shown in the terrain as an uplift. I think it's convincing.
If there are doubts about the theory of fluid dynamics, I will provide additional evidence. In the picture, I showed in blue a tectonic block, which has dimensions of 560x560 km. It has a different spatial orientation (77° and 347°). Along the northern and western borders of the block, you can see straight riverbeds. This can be explained only by the theory of fluid dynamics of the lithosphere. All riverbeds coincide with tectonic faults. Thank you for watching.
Sincerely, Boris.
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In the Red Sea (Egypt) we have found that practically all bays can only have discrete directions (angles). This is 0° and 270°; 17° and 287°; 35° and 305°; 45° and 315°; 62° and 332°; 77° and 347°. On the coast, the soil is always wet (Map 1), and sometimes there are even lakes (Map 2). I do not want to impose my opinion because there may be more correct explanations. Maybe there are ideas?
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We have seen many coral reefs. Some of these are algae staple because they are rich in nutrients. However, in such a situation we observed a coral reef dominated by Sponges. Physical and other parameters of the water indicate that it should also be an algae-dominated reef rather than a sponge-dominated coral reef. We can't understand why this happened.
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It may be related to the luminosity in the location. Sponges may be in advantage on low light environments.
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Dear Red Sea coral reef enthusiasts,
the attached picture was taken by H. Schuhmacher (then in Bochum, Germany) in 1980 at the Wingate reef off Port Sudan, about 12 m deep. Have you seen this hexacoral-like structure before and can direct us where to find the ID?
Thanks in advance,
Goetz Reinicke
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Hi Götz,
The bleached (light-brown) parts of the encrusting colony (top and bottom in the picture) show small scleractinian polyps with a style-like columella and two unequal cycles of septa. Between the polyps are prominent coenosteum styles. Therefore, I think that this is a colony of Stylocoeniella armata.
Best wishes, Bert
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We are launching a Ph.D. research looking at the effect of salinity and temperate increase on the bioerosion rates in coral reefs in the northern Persian Gulf. In doing so, artificial and natural blocks will be submerged along a gradient of salinity and temperature where hypersaline water from the desalination plant discharges into the sea. We are planning to use two types of natural and artificial blocks including (1) natural blocks by segmenting dead massive corals (e.g., Platygyra sp.); and (2) artificial blocks made of carbonate calcium.
But wonder how to make artificial blocks that need to be identical to natural blocks in terms of porosity and texture. Can we use crushed dead corals that have been blocked by a glue? If yes? What type of glue?
Wondering if anyone has experience in making such artificial blocks.
Best regards
Mohammad
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Agree with Mr. António Godinho.
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I have been constructing 3D models of large corals and I was wondering if there is a software that I can use to gather the area of live tissue vs dead/disease? I am aware there is a way by tracing the live tissue but I would like to avoid that by automating the process based on color/texture. I have seen it done with a large swath of coral reef using QGIS to calculate the coverage of multiple species and was hoping is could be done using a similar technique. I have attached an image of one of the corals I have constructed for a visual of these corals.
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using correlation regression model in MATLAB using DN Values and field data values can identify
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I have noted dramatically change in color on the body of some marine fishes. For example, I saw a dramatically change from a "intense-yellow" color to "brown" color (normal color), just in one second. Is not a gradual change of color, is very quickly, similar like an octopuses. How could be explained this color change?
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Body coloration in many poikilothermic animals is plastic and can be adjusted at the individual level. Particularly in fish, this rapid change is called physiological color change and refers to synchronous movement of pigment organelles within pigmented cells in the skin called chromatophores (black melanophores containing melanin, yellow xantophores containing pteridine, red erythrophores containing carotenoids, and the more rare blue cyanophores containing an unknown cyan biochrome), as well as in changes in angles of light reflecting crystals in iridophores and leucophores . When aggregating the dark melanosomes of the melanophores, the skin not only becomes pale but also more transparent. Increased body transparency can also aid background matching.
The advantage of rapid color change is obvious, because it allows rapid adjustments and flexibility at the individual level depending of the situation. It is used for background matching as well as for communication and sexual display . Studies on pipefish have shown that the color ornaments of the females are shut off if a predator enters the mating area, clearly indicating the advantage of an adjustable body appearance and the risk of a colorful display .
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Ha logrado alguno críopreservar exitosamente los ovocitos de alguna especie de coral? Solamente he encontrado un caso para una gorgónea (Junceella juncea) por medio de vitrificación (Tsai et al. 2015, adjunto abajo). Se que algunos investigadores (comunicaciones personales) han logrado en algunos casos descongelarlas y reactivarlas después de realizar las inmersiones o el almacenamiento en nitrógeno líquido, sin embargo, pese a que los ovocitos salen 'vivos', estos pierden su capacidad de ser fertilizados (quedan infértiles).
Agradezco de antemano su apoyo y colaboración compartiendo sus respuestas y experiencia en este asunto.
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They may have been frozen too quick? Slow freeze and fast thaw is best, I think :)
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The only way for companies that carry out ecological activities to be implemented in the future is to surpass polluting companies in their field, being more competitive than them, through technologies such as Blockchain and innovation in production processes. Discover how carbon credits are going to help green companies be profitable and how prosumers are going to play a leading role in that process
Can cryptocurrencies be used to make ecology profitable?
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Dear Asiel,
The seven principles are 1) maintain diversity and redundancy, 2) manage connectivity, 3) manage slow variables and feedbacks, 4) foster complex adaptive systems thinking, 5) encourage learning, 6) broaden participation, and 7) promote polycentric governance systems.
Profitable how? Just example
1. The Environmental Profit & Loss (EP&L) methodology, a pioneering corporate natural capital accounting methodology is helpful to enrich profit margin of ecology. The same time, Environment & Non-Profit by on Theme Forest to save is profitable to the world.
2. Optimized rainfall.
3. Managing sunlight, plants and time
4. Producing profits from plants and animals
5. Producing time for recreation
6. Producing habitat for flora and fauna
7. Managing for complex perennial grassy woodlands
8. Managing for complex perennial grassy woodlands
Ashish
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Hi everyone: I am working with fish biomass data and trying to convert my observations from g/100m2 (regional standard) to Kg/ hectare (global standard). Can anyone advise the correct conversion formula to do this?
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Both answers above are correct, the answer of @ Elsaid Elashry is the easiest conversion g/100 m2 to kg/ha.
Best regards
Vit
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Corals are small animals that form a symbiotic relationship with algae. The algae produce sugars for the corals and are in turn provided with needed nutrients and protection from predators.
But it doesn't explain where the amazing diversity of fish, mollusks, crustaceans, everything else comes from. As far as I can tell, the whole point of the coral's success is that their hard skeleton protects them from all but the most specialized predators.
So if the corals don't directly add energy input to the coral reef ecosystem, what is it that makes the reefs so productive and diverse? Or, put another way, what makes a coral reef environment more productive than simple phytoplankton floating in the open ocean?
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Do you think ten years is enough to make any changes to coral erosion?
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Are you asking if bioeroders can erode an otherwise healthy reef in 10 years, or if coral reef erosion can occur over 10 years? There are lots of examples of reefs that have experienced disturbance that subsequently experience rapid both physical and biological erosion. The Galapagos post-ENSO disturbance and Mo’orea post COTS and typhoon are two examples that come to mind.
Whether bioeroders can directly affect the health of otherwise healthy corals I’m less clear on. There may be some other examples from the Galapagos and elsewhere of overfishing echinoid predators that are pertinent?
Dan
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Depths observed = 5-25m, potentially deeper. Observed typically in shaded areas within shallow coral reef habitats in Mauritius. 'Colonies' usually no larger than 5-10cm^2 and 1-2cm 'tall'. Often on the underside of overhangs or in cavernous areas, but also observed growing upright in appriopriate areas of the reef slope.
Structure clearly mineralised, not flexible, incredibly brittle and fragile. Seemingly not associated with any recognisable form of benthic substrate including sponges, entoprocts, ectoprocts, anthozoa, algae etc. Initial glance suggested some strange hydrozoan but unlike anything I recognize. Does not appear to be simply an endoskeleton remnant of anything nearby. Very keen to be enlightened.
Cheers!
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I think the picture in wikipedia is mis-identified. Homotrema rubrum (Miniacina miniacea) looks quite different (see my book Wirtz and Debelius on Eastern Atlantic and Mediterranean Invertebrates) and is nowhere near as large. I do, however, also suspect a giant foraminiferan, just another group.
Peter
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I am looking for not very expensive methods to determine how much CO2 could be trapped by coral reef species in the Caribbean. Also, I want to do the same thing in Coralline Algae.
Could you suggest something about this?
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Following Saha et al. (2019) - https://doi.org/10.1016/j.epsl.2019.115793 - whether the reconstruction of land clearing and forest fires in the Bornean tropical forest should be possible using V/Ca of the Porites observed by Browne et al. (2019) - https://doi.org/10.7717/peerj.7382 - in the Miri-Sibuti Coral Reef Ecosystem?
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Thanks for your reading
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we are looking at the effect of salinity and temperature increase on bioerosion rates in coral reefs in the northern Persian Gulf of the Persian Gulf for 18 month. To that end, we are planing to use natural ( dead massive coral parts) and artificial blocks made of carbonate calcium. we want artificial blocks be identical to natural blocks in term of texture and porosity.
can we use iceland spar crystals as artificial blocks that bioeroded by macroborers?
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Rapid bioerosion in a tropical upwelling coral reef - Plos
https://journals.plos.org › plosone › article › journal.pone.0202887
by A Wizeman -- can be consulted
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Dear all,
I'm looking for a way to statistically compare species composition between sites. I have the abundance of 42 species for 21 sites belonging to 4 different categories. I will also soon have GPS data giving me the distance between sites.
I basically want to see if there is any similarity in term of ecological composition between my sites and between categories and also if any species indicators (or combination of them) come out for each sites or for each category of sites.
So far, I've tried to compute Bray Curtis matrix (vegan package on R) giving me dendrogram of similarity and play around with Indicspec package, but I'm definitely out of my confort zone with that kinds of tests. Once I have the GPS data, I'd like to include those informations in the analyzes, but I have no clue on how to do it (Mantel correlation?).
Any inputs on what to do and how to do it would be much appreciated.
Cheers
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It appears like you have a perfect design for any kind of ordination. Check Fig. 3 in our latest work (Domer et al. 2019) on bird communities in riparian corridors at the Negev desert. We used nMDS, though Primer 6 can offer many other ordination types. In this method species composition similarities are compared among samples (all pairwise combinations) using either Jaccard or Bray-curtis index. It will then plot all your samples on 2 (or 3) axes state-space. You can then mark your 4 treatments differently and see how they cluster (compared with your 4 "treatments" we only had two, which were nicely separated). Real distance among sites can also be entered to the model based on your GPS measures.
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An increase in the live coral cover is generally seen as a positive sign of resilience of a reef. However I feel that there is something beyond live coral cover. Please put in your comments/suggestions and any related articles.
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B Manikandan, you are absolutely correct. One of the biggest flaws with Perry's work is what you just explained (I am not judging though, they did a great job tackling this topic where there is no full solution). Another issue with the bioerosion part of their work is that the method assumes somewhat controversial rates for sponge bioerosion from other studies can be applied to percent benthic cover of sponges (hard when considering most of these sponges are cryptic organisms that hide within the substrate). They also do not account of other macroborers such as mollusks and worms (which usually are not huge contributors but it varies by orders of magnitude depending on the location). The way they handle microboring is also difficult at best. To deal with these issues, I and others used experimental substrate blocks of known weight. However, this method also has inherent flaws (see attached paper that discusses some of these issues).
Very few people have been able to directly consider physical erosion and it is usually assumed to be minimal. I work in deeper water so this usually is not a problem for me. Researchers often assume most physical erosion is facilitated by bioerosion (organisms loosing up material) but its hard to account for how sediment abrasion may remove carbonate or other physical processes.
Chemical processes are also assumed to be relatively negligible (but this is hard to test). It is unknown how much carbonate cementation processes actually add per weight and volume to the framework. Dissolution in most areas of standard pH can be assumed to be minimal though.
Ultimately, we are trying to quantify a "simple" mass-balance equation with almost an infinite amount of variables. We do the best we can to account for major factors modifying carbonate structure but it is impossible to account for everything unfortunately. Still, I hope I have provided some help to you. Please let me know if you have any more questions.
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Can you help identify the this erosions that Around it Yellow line draw?
Can it be sponge?
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It is often helpful to try and find the "connection" to the outside world. Sponges rely on multiple (but not direct) connections to pump water. However, mollusks only require one and it is usually fairly straight. Hope this helps.
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So many literatures available as mentioned by some answers.
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Hi, I am a starting my BS' senior year in a few months. The major of my study is molecular and cell biology, I also have a decent background of computational biology tools used for analyzing high throughput sequencing data.
I am interested in perusing my graduate studies at coral reef genomics, biotechnology of coral reef restoration, etc. The problem is I am confused somehow and do not know where to start from. Can anyone give me any advice that can help (Recommending a quality lab that works in the field, having the contacts of a professor that works on the field and maybe needs to recruit a masters or Ph.D. student, or recommending an online course or a textbook that would help me get the required knowledge)? Please, provide me with anything that you think may help. Thanks in advance.
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Check out some of the marine science programs such as the ones at the University of North Carolina in Wilmington. there are all sorts of programs along the coast. Find a university that has marine field stations such as UNC, U, and College of Charleston just to name a few. I am sure there are many more along the East coast, Gulf of Mexico, and the west coast.
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Is it possible to restore the coral reef damage due to vessel grounded? because there are an expert said that coral transplantation is no need to replace all the coral reef damage areas.
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Hi Yudi,
Coral reef damage to vessel groundings has been studies and there are a number of papers published on the subject. The answer to your question depends on many factors from the degree of damage to the reef framework, the status of the local environment where the grounding occurred (e.g., pollution and disease), the type of physical damage the grounding resulted (was the reef matrix left mostly intact or turned to rubble), did the grounding released some toxins from the cargo resulting in chemical contamination, availability of coral spawn from local and regional reef systems (coral recruitment rates, post-settlement survival, etc.), physical disturbances (hydrodynamic forcing) after the grounding occurred etc. Ship groundings that result is severe damage to the reef matrix by turning it into a rubble field pose the greatest threat to coral reef recovery even in relatively pristine environments, because of substrate mobilization and this gets worse if the coral reef is also subject to other anthropogenic stressors. As you can see the question is very complex so I have attached a few papers that you should find useful. I would also like to suggest looking at the following link that addresses marine ecosystem restoration:
Cheers, Tomas
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I'm currently trying to examine any potential differences among coral reef fish assemblages between three different micro-habitats, sampled from six different sites, from two different islands (three sites per island).
Having performed a PERMANOVA (Primer 7) using three factors: micro-habitat (fixed), site (random) and island (random), I find that microhabitat has no significant effect. However, when I peform a PERMANOVA using micro-habitat as my only factor, I get a highly significant result (p < 0.002).
I'm not a statistician, so my understanding of multivariate analysis is pretty limited, but I would really appreciate it if someone could explain why the number of factors used can change the output.
Thank you
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First, your sites are not replicates since they are most likely close to each other and are similar environments. They are subsamples or pseudo-replicates. Your true replicates are the islands, so long as they are distant from each other. But don't worry too much. You still will obtain interesting information. You should only perform your PERMANOVA with all of your factors due to possible interactions among all factors.
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Ocean acidification is the lowering of ocean pH due to increasing levels of CO2 in the atmosphere (from fossil fuel burning, deforestation etc.). The absorption of CO2 has already acidified the surface layers of the ocean causing an overall decrease of 0.1 pH units since the pre-industrial period, which is equivalent to a 30% increase in acidity and a 16% decrease in carbonate ion concentrations. The surface ocean pH is projected to decrease by 0.3-0.4 pH units by 2100 (predicted to decline from approximately 8.2 in pre-industrial times to 7.8 by the end of this century). The changes in basic ocean chemistry due to ocean acidification are likely to have impacts on organisms that require calcium carbonate to build their shells or skeletons such as corals, and molluscs (oysters, mussels, pteropods, and abalone). There are three naturally occurring forms of calcium carbonate used by marine organisms to build shells, plates or skeletons: calcite (e.g. marine plankton coccolithophores), aragonite (e.g. corals, pteropods) and high magnesium calcite (e.g. starfish, sea urchins, brittle stars). The solubility & sensitivity to ocean acidification is higher with magnesium calcite and the least with calcite in the following order: magnesium calcite>aragonite> calcite.
Increasing ocean acidification can significantly reduce the ability of reef-building corals to produce their skeletons via reduced calcification. Successful fertilisation, larval settlement, recruitment, growth and survivorship of corals can be affected due to ocean acidification. A recent research shows that corals, echinoderms and molluscs are very sensitive to a decline in the pH value compared to crustaceans (Wittmann and Pörtner 2013). Many marine fish (about 25% of known marine fish) use coral reef as a habitat, shelter (refuge) and food. Coral reefs provide food and livelihood security for some 500 million people worldwide including 90% protein need of inhabitants of Pacific Island Developing Nations. Coral reefs are the primary economic driver in many tourist destinations and protect fragile coastlines from threats such as tsunamis and erosions.
Some experimental results showed that calcification is generally reduced in mussels under near-future CO2 levels. Projected future CO2 level (rise of ocean acidification) can impact on shell formation, larval development, and survival rate in abalone. A study on the early development of the oyster (Crassostrea gigas) found that shell calcification is reduced in juveniles and their body shape and size are also altered. Many mollusc species at the adult and juvenile stages have shown reduced growth and/or health under projected ocean acidification scenarios. Molluscs are food for commercial fish such as haddock, halibut, herring, flounder and cod. Clams, scallops, mussels, oysters, abalone and conchs provide direct protein sources for various island and coastal communities and are valuable commercial fisheries. Molluscs account for 8% of the global marine catch.
Though the effects of increased acidity on adult finfish seems to be minimal or supposed to be largely unaffected (since fish are able to control their acid-base balance by bicarbonate buffering, mainly across the gills and via the kidney), however, some recent experiments with tropical coral reef fish suggest that the sensory systems of fish can be affected by ocean acidification. For example, when clownfish (Amphiprion percula) were exposed to higher CO2 levels, they could not distinguish predator from non-predator and were found swimming toward predators, instead of away from them (Dixson et al. 2010). The loss of the senses of sight/smell/touch due to ocean acidification would thus reduce survival in commercially important fish species. Another experiment (Frommell et al. 2012) showed detrimental effects of ocean acidification on the developmental stages of Atlantic cod larvae (Gadus morhua). Exposure to elevated CO2 levels resulted in severe to lethal tissue damage in many internal organs in larval cod, with the degree of damage increasing with CO2 concentrations. As larval survival is the bottleneck to recruitment, ocean acidification has the potential to act as an additional source of natural mortality, which may affect populations of already exploited fish stocks. A small change in early life survival can generate large fluctuations in adult-fish abundance in the wild.
Antarctic krill (Euphausia spp.) is a key pelagic species in the southern region and represents the largest fishery resource. Many animals like whales, seals, penguins and fish are dependent on krill fishery. Marine ecosystems in particular krill populations could be vulnerable to ocean acidification. For example, when krill eggs were exposed to elevated seawater CO2 levels, hatch rates were found significantly lower, it also delayed embryonic development (Kawaguchi et al. 2013). The pteropod, or “sea butterfly” (with aragonite shells) are an important food source (for fish such as juvenile salmon, birds, tiny krill, and giant whales). They (pteropods) are also a good indicator of ecosystem health and play an important role in the oceanic carbon cycle. The shells of pteropods, Limacina helicina antarctica – living in the seas around Antarctica are being severely dissolved by ocean acidification according to a new study (Bednaršek et al. 2012). The main consequence of loss of shell due to ocean acidification will be increasing vulnerability of pteropods to predation and infection, which will in turn impact other parts of the food web.
Ocean acidification may cause an increase in jellyfish (Attrill et al. 2008). Jellyfish are key predators and can affect the abundance of zooplankton, fish larvae and eggs, which affects survival to the adult stage (or recruitment) of fish populations. As jellyfish are rarely the preferred food for other marine animals, any significant increase in their numbers could have major consequences for pelagic ecosystems and fisheries.
Nevertheless, rising CO2 may enhance productivity of non calcifying seagrasses, seaweeds as they require CO2 for photosynthesis and living, for example, photosynthetic organisms such as seagrasses showed higher growth rates, as much as five-fold or higher with acidification (Hendriks et al.2010 )
Question: Will ocean acidification be a threat to seafood security, commercial fishing and livelihoods? If so, how?
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The daily activities of human beings result in the emission of huge amounts of harmful gases, such as carbon dioxide, sulfur oxides and nitrogen. The most important of these activities are the various industries based on burning fuel, power plants, heavy fuel, transport,
 These gases are released into the atmosphere, many of which dissolve in rainwater and sea and ocean waters. Carbon dioxide is dissolved in water and carbonic acid is formed, which causes the acidity of the water to rise.
Many marine organisms are affected by the acidification of the oceans. Many marine systems have deteriorated in many regions of the world after the concentration of carbon dioxide in the atmosphere has increased significantly,
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Hi,
I would be interested to learn about other people's experiences with the use of spawning tiles to collect fish eggs from the field.
I know that some species of anemonefish, for instance, will readily deposit egg clutches on ceramic tiles when placed near their breeding site (e.g. Amphiprion percula or A. polymnus), while others do not (e.g. A. bicinctus or A. chrysopterus).
What other benthic breeding species is amenable to this approach?
Thanks very much!
Gerrit
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I am working on a concept of coral reef formation that requires this information in order to prove a point. If you know where I can find this map, kindly include the citation as well if possible. Thank you!
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Hi Dominique, the following paper has maps showing global distribution of aragonite saturation states in surface waters and at 50m, 100m, 200m and 500m depths. No 10m depth maps though unfortunately, although it may help!
Jiang, L.Q., Feely, R.A., Carter, B.R., Greeley, D.J., Gledhill, D.K. and Arzayus, K.M., 2015. Climatological distribution of aragonite saturation state in the global oceans. Global Biogeochemical Cycles, 29(10), pp.1656-1673.
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Four coral reef cores were conducted shear wave velocity measurement by GDS bender element system. At the band of 0.4 to 0.9 kHz, shear wave velocity of Porites is inversely proportional to frequency, from core 1 to core 4, the shear wave velocity decreases from 785 to 295 m/s, and the percent frequency effect (PFE) is about 4.8 to 8.8 %. In the 1 to 5 kHz band, the shear wave velocity increases rapidly as the frequency increases, the range of velocity change is 280 to 1600 m/s, and the PFE varies from 15.1 to 18.9 %.
The question is why the dispersion of coral cores are so great?
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Unqualified comment: Dispersion has to do with velocity dependence of frequency, in "polychromaticy" or scale dependence in "monochromaticity", in a way.
Velocities are of course dispersed. What is dispersion though ?!
Presentation resembles more of a relative quality test !
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Looking through the litterature it seems that baited remote underwater video stations are not totally reliable to identify the assemblages and density of fish biodiversity. In coral reefs, the majority of publications include both shrimp (prawns) trawls or other types of nets in addition to BRUVS.
I was wondering if anybody tried this technique in mangroves, and weather or not it is actually possible to only use BRUVS and not trawls.
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Hi Ada,
We used unbaited RUVs in mangrove and adjacent habitats to determine whether they would be suitable for fish recruitment in north-western Australia. The water was quite clear in this region, only a report available for now as studies are ongoing (see attached). Marcus Sheaves also has ongoing video based work in mangroves
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Need help for a choice of data logger (water temperature) for coral reef monitoring (bleaching event)
1- Life battery: minimum of 3 months (long life if it's possible)
2- Sensor precision 0.1- 0.2°C
3- Fluency to upload data
4- Durable
Have you ever used HOBO Water temperature Pro ?
Thanks a lot
Alexis
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Dear Dr Carroll,
Thank you too for your answer. I think Hobos will be our choice.
Thank you for your recommendation about the waterproof shuttle, i also think it will be a great help in the field (time/energy/efficiency).
Best wishes
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I was conducting a research about coral reef in four different zonations: 1. Core area; 2. Buffer area; 3. Utilization and tourism area; and 4. Human settlement area, and come across an interesting findings. The coral cover percentage in human settlement area appeared to have the highest coral cover percentage compared to four other zonations. Also, i found that recent observation at the same location is having the similar result.
Are there references i can read to learn about this event?
Thank you, your response will be appreciated
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Have a look at this attached pdf.
good luck I
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Dear researchers,
I am currently working on a project aiming to access the influences of a disturbance on coral reef fish assemblages.
As the title goes, I've encountered a major problem while computing FD indices. I am going to compute Functional Richness, Functional Evenness, Functional Dispersion proposed by Dr. Sébastien Villéger at 2008.
However, the lack of enough species/functional entities in most of our observation makes FD indices computation impossible (The size of the assemblage in every observation is small, usually less than species).
Here are some details of our research method
The field survey method we applied is "modified Stationary Point Count (SPC)", apart from the usual SPC, I select a patch of coral (ranging from 20*20cm2 - 150*150cm2 ) as an object and record down the species either swim by from less than 1m above or crawling on it, as well as the abundance of those species for 6 minutes. And thus we usually encountered less than 3 species. Three treatments are there and for each treatment, we collect 10 data (10 observation).
I appreciate any comment and piece of advice on this topic and thank you in advance.
Best,
Yu-De
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I concur with the prior answers. A methodological answer to why you're unable to calculate the metrics is because the FRic (at least in R package "FD") is calculated on a principal coordinates analysis that requires more species than traits in each sample. There are corrections (see ?dbFD or ?calc_metrics in R package "ecospace") you can use to try to get around the limitations. But if some samples really have less than 3 species, then you will not be able to calculate this metric. (Technically, all Villeger's metrics are based on PCoA space, but only FRic requires the "more species than traits" requirement for the convex hull calculation to work correctly. If using dbFD to calculate, you can "turn off" FRic calculation with dbFD(... calc.FRic=FALSE), and you'll still get the others.
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I tried to dissolve the corals dispersed in water and then I added high pure acetic acid slowly, but this method damaged and denatured the protein. 
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Thank you Mr Singh
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I am conducting a Meta-analysis for the very first time. According to the literature in meta-analysis for investigating benthic changes on coral reefs, the effect size usually used is the geometric rate of change. However, I cannot find the right way to compute this effect size and its weight in R.
If someone knows about other effect size method is also pretty welcome.
If someone can help would be amazing. Many thanks in advance, Ameris
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El tamaño de efecto no es más que la diferencia entre dos medias. Tu puedes calcular esa diferencia, y por simulaciones de Montecarlo calcular el intervalo de confianza de esa diferencia.
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We started a new project which involves the identification of coral reef and coastal fish species in Mauritius. I would be very glad about any literature suggestions, especially identification keys.
During our last field work we encountered this fish species in the intertidal zone in Mauritius (Indian Ocean). It has a striking fluorescent V on its head, clearly visible when viewed from above. The fish is ca. 3 cm in total length. I would very much appreciate a little help in identifying the species! Thanks a lot upfront.
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Dear Dr Date:16 Nov 2017
Family: Pomacentridae
Scientific name: Chrysiptera glauca (Cuvier, 1830)
En Name: Grey demoiselle
Description:
Dorsal spines 13; rays 12-13; Anal spines 2; Rays 11-13 (According to your specimen to count DS/Rays; AS/Rays)
Distribution: Indo-Pacific (Almost Tropical- Sub tropical region), Africa, Japan, Australia, Gulf of Mannar, India.
Maximum length: 11.5 cm
Life span: 3.5 years
Age at first maturity: 1.1 years
Food: plants/detritus
reg
Dr Vaitheeswaran Thiruvengadam
Whatsup No: +256 702071260
Uganda No: 0720029712 (Kampala, Uganda, East Africa)
Indian Moblie Number: +91 9043810354
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These two photos show two examples of holes in the scleractinian coral Porites astreoides. What organism is responsible for this? I tend to exclude a gall crab (Cryptochiridae), as they are not known to inhabit Porites. Maybe it indicates an epibiont like a cirripedian which cannot keep up with upward coral growth, but I only see these holes in this particular coral species.
Has anybody investigated this phenomenon?
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Another source of holes (or rings) are caused by contact with Zoanthus solanderi.  Have a look at Figure 1 in Karlson (1980). Bull Mar Sci 30:897.
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I am currently working on a paper and I need to know if coral skeleton density actually does increase with depth for all coral species, if this is species-specific, or if this issue is still unknown.  I am specifically talking about coral species that are found both in shallower water and at mesophotic depths.  However, I would also like to know if depth specialist corals only found in deeper water have higher skeleton densities than shallower coral of different species.  At the moment, I am only aware of 2 Caribbean studies (Baker and Weber 1975; Hughes 1987) that test this issue.  Please let me know if you are aware of others or have any other insight.  Thank you.
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Thanks Tomas.  I am aware of most of these (especially the one I wrote) but I was still looking for more coral types at deeper depths.  Anyone else have other suggestions?
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I am trying to understand what drives bioerosion by grazing organisms.  I understand that algae are a major food source, but there are often problems in the literature distinguishing between basic herbivory grazing and BIOEROSIONAL grazing.  My question is specifically related to what controls bioerosional grazing in reefs with depth, especially related to food sources.  Please let me know if you can help. 
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size of 6-8cm, found within 7-8m coral reef area. Certainly from Family Pomacentridae
Black spot in the pectoral fin, yellow margin at the dorsal spine, with black spot or probably an ocellus at the anal fin, and has bluish ring in its eye
I have looked in references such as Damselfishes of the World (Allen 1991), World atlas of marine fishes (Kuiter and Debelius, 2006), Reef fish Identification (Allen et al 2003), and Indonesian Reef Fishes (Kuiter and Tonozuka, 2011), however, I still can't find an exact  match.
Thanks
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The caudal fin shape rules out the Chromis hypothesis, and rather points towards Pomacentrus.
I don't think Stegastes partitus is an option; the colouration of that Western Atlantic species is quite different, for instance that species wouldn't have the black blotch on the pectoral-fin base.
Maybe it is an unusual colour morph of Pomacentrus philippinus, or a species in the complex similar to Pomacentrus nigromanus and P. nigromarginatus; see the photographs in Allen & Erdmann (2012: 621-621). I doubt a positive identification without specimens would be possible in this case.
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I would like to understand which light wavelengths reaches the layers inside a coral skeleton. I couldn't find anything in literature, so any help would be welcome.
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While certain studies clearly state that coral reefs are a carbon source (e.g., Ware et al 1991), on a broad and long term scale, can skeletons of corals/oysters/tube worms etc, that are permanently embedded onto hard substrate (be it coral reef, rock reef, or man-made structure), be considered as capturing some CO2 - even if CO2 was released in the calcification process?  
Many thanks 
Shimrit
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Many thanks! 
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Wetlands has various definition around the globe. coastal fresh water Marshes, swamps, tidal salt marshes, peat bogs, fens, mangrove swamps, etc.
But there are few definitions in some websites just says wetlands are place where land and water meets! without including any ecological or biological measures and landscape type. Surprisingly counties like India and Sri Lanka included rivers and tanks under the the same. How this is possible? 
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Thanks Teresa
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What characteristics of species, such as temperate or tropical, sessile or motile, and so on, make them especially delicate to stressors inferable from environmental change?
What particularly about species makes them more prone to being affected by climate change?
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Hi Koleen,
Your question is similar to Lance Tolentino. I have worked on the spawning traits of fishes in the wild and in captivity and found temperature as one of the influencing factors that triggers spawning behavior. They have range of temperatures suitable for spawning.
This could be applied to other organisms as well, though temperature might have varied degrees of influence to different organisms. Migration of species is also an effect of temperature or change of environmental factors, that you may consider
I hope the above information could be of help in anyway to your query. Your topic is interesting. Keep on going and good luck!.
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genes specifically: rcbL and rcbS
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thank you @SurenderSingh :)
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TL ~25mm. See at Rottnest Island on 28 April 2017 in a group of three conspecifics. Any thoughts greatly appreciated as it is out of range.
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This is probably Ostorhinchus fleurieu; O. aureus has the tail spot with concave margins, while they are convex in O. fleurieu.
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TL ~16cm. Rottnest Island, Western Australia, May 2016. Depth 12m. I believe it is either Torquigener flavimaculosus or T. hicksi. I would like confirmation so it can be included in a soon-to-be-published book on the fishes of Rottnest Island. Any help with identification or suggestions greatly appreciated.
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Torquigener hicksi and T. flavimaculosus are very similar in colouration and extent of bristles on the body surface; the main difference seems to be the position of the upper end of the pectoral-fin base, which is about level with the lower orbit margin in T. hicksi, but situated nearly one eye-diameter below lower orbit margin in T. flavimaculosus. Difficult to see this character in your image, but the upper margin seems to be nearly level to the lower orbit margin. Therefore your image probably shows T. hicksi. That species is known to occur in your region anyway.
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The area might possible experience a number of typhoons over the year, stable is understood as most resistant to those factors mainly minimizing the loss of coral transplants.
Least invasive for further definition is the impact the method would have in terms of length of implementation and use of tools that would bore into the ocean floor for example.
Examples of the methods can be found in the provided links.
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Thank you for the article, it should help with the formulation of my theoretical methodology.
The area of the study is Apo Island Marine reserve, apart from having experienced two typhoons, locally named Sendong and Pablo that have destroyed portions of the coral reef, it has also experienced destruction through destructive fishing methods via blast fishing and use of cyanide. To my knowledge, or my research thus far it has not experienced a large bleaching event due to rising ocean temperatures. I do understand the significance of that factor, in the theoretical study this is for the coral species that is to be transplanted will also be tested on their resistance to changes in the environment measured through their survival rates, among those factors would be how resistant they are to changes in temperature.
The question is to aid in formulation of my methodology for a mock research proposal for my undergrad ecology class so the budget is more of to be determined based what I am able to formulate through the methodology, so I wont be able to answer a project 'How much'
While i do understand that global warming is the main problem to prevent further loss of total coral cover, the theoretical objective of the experiment is to propagate and hopefully better protect the damaged portions of the Apo Island Reef system.
If it would interest you I can send you the current draft of my introduction and review of related literature. Thank you for your time and interest.
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Hi all, I know it may be difficult to identify coral species from a photo but it would be great if anyone can point me to identify these corals up to genera.
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1- Merulinidae - Favites sp. but it could be different genus. You need skeleton to confirm both genus and species.
2- Merulinidae - Favites (flexuosa?) but you need skeleton to confirm both genus and species.
3- Merulinidae - Platygyra sp.  but you need skeleton to confirm both genus and species.
4- Poritidae - Porites sp. but you need skeleton to confirm the species.
5- Merulinidae - Favites sp. but it could be different genus. You need skeleton to confirm both genus and species.
6- Merulinidae - Platygyra sp. (or Leptoria) but you need skeleton to confirm both genus and species.
7- It's a sponge... Xestospongia? I'm not a sponges specialist.
8- Merulinidae - Dipsastrea sp. but you need skeleton to confirm both genus and species.
9- Merulinidae - Another species of Platygyra (daedalea?) but you need skeleton to confirm both genus and species.
10- It's a soft coral... Lobophyton? (Sinularia?)
Merulinidae is not an easy group to identify underwater (like most scleractinian corals :-) people might say. It will be great if you could collect a large piece for taxonomic check, and subsample for molecular purpose. Keep me posted!
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Hi all, I know it may be difficult to identify coral species from a photo but it would be great if anyone can point me to identify these corals up to genera.
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Dear Gayashan,
1. is a soft coral Lobophytum sp. or Sinularia sp?
2. Cup coral Turbinaria. Only a close view can confirm whether it is T. mesenteria or T. peltata
3. Symphilia radians
4. On the front is a sponge but the small coral at the back is Favia favus?
Confirmed with Mr. Raghuram, a coral taxonomist.
Best
Deepak
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Hi everybody!
I was wondering if anyone would have any good papers that would discuss different scleractinian coral species fragmentation rates or erosion rates? More specifically how fast scleractinian coral skeleton erodes in the sediment. It's probably highly correlated with the skeletal density and the growth form (plating, branching or encrusting) as Raymond C. Highsmith discusses in his article "Coral Bioerosion: Damage Relative to Skeletal Density" (1981). But I'm trying to understand what are the chances of finding different species in the sediment and if some species will be under-represented in sediment studies and if so which? My hypothesis is that encrusting corals (such as Oulastrea sp. and Lithophyllon sp.) will usually not be well represented in sedimentation studies whereas branching and plating corals (such as Acropora sp. and  Turbinaria sp.) will dominate the skeletal abundance. Any references and reading recommendations are highly appreciated.
Thank you!
-Stefan
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Thank you Tomas!
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How can we classify oyster reefs on the basis of spatial geometry as we do for coral reefs (fringing, barrier etc)??? 
Any hint or literature share will make my ways easy.
Thank you!
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Please check the below given link and PDF attachments.
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I am interested to know the biomass potential from drifted seaweeds over the different countries. We have extensive but very old estimate for entire coast and new data for species composition but for limited locality from India. Any information will be helpful.  
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Smita - I am looking for some published literature from around the world. There are plenty of regional studies and believe even more unpublished data. If you come across any publication do forward me the same.   
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The aim is to try to ellaborate an up to date  variation scale of this indicator to represent coral disease  incidence risk in Caribbean coral reefs. Reference sources are appreciated.
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Yes, Monia, I agree, but I am needing this number to use it in the top of a scale of POTENTIAL vibrio infestation risk. Wish to find this number in the papers you kindly recommended me. Thank you.
Best wishes,
Pedro
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These are all recent marine sediments
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Due to number 3 & 4 
Family: Spondylidae Gray, 1826,Genus: Spondylus Linnaeus, 1758, most of can be Clypeaster intermedius
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Is anyone working on modeling how changes to coral reefs may change coastal erosion models.  This is something I am very interested in getting into and is wondering if anyone would be interested in collaborating or has suggestions on who to speak to.  Thanks!
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Hello David,
Please get in touch with Joseph M Maina of the University of Queensland. That is his expertise, you can visit his researchgate profile at  https://www.researchgate.net/profile/Joseph_Maina8 and also his google page for his publications at https://scholar.google.com/citations?user=Go7V_2AAAAAJ&hl=en
I am also appending one of his recent publications on a study on coral reefs in Madagascar.
Goodluck,
Beckline.
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This answer refers to coral reefs that display higher coral cover plus the continued dominance of the original species that dominated or were well represented in the past of the reefs. E.g. Acropora palmata in reef crests, and Orbicellas, Montastraeas, Agaricias, etc. and thus were not substituted for  oportunistic species as Millepora complanata, Siderastrea siderea, Porites astreoides, for example.
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They are indeed gorgeous, Carlos and make I hope you can win the battle against dredging..Two surprising areas that appear to be bouncing back are the Pearl Cays (left for dead 20 years ago when I first dove them) and the reefs on Big Corn Island, Nicaragua (over 25% average cover from our Caricomp work)... Both are MPAs (albeit paper  ones) but will follow up next year as part of developing a new strategy and action plan for those two, along with Seaflower (and hopefully can work in a politically free underwater environment that transcends the tensions between Nic and Colombia about  ownership)
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Recently my lab mate has collected this specimen from coral reef habitat of Gujarat state, located on western coast of India. 
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Hi, I also can't see the photo...
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This bryozoan colony (~ 15 cm height) was found in June 2015 in St. Eustatius (Dutch Caribbean). It has somewhat flattened branches.
Who knows what species this is?
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I would like to know which are the main ecosystem services that provide communities coral reefs and what are the main economic and social activities that affect or put at risk.
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My snorkel buddy found this fish in a rocky habitat in Big fisherman's cove. It was hiding in the rocks in 2.5 meters of water in a shaded area. It has a orange head with foggy eyes, that reminded her of cataracts. When she got closer to take a picture the fish would raise its spines toward her. Pictures attached below. Thanks for the help we are really curious to know what it might be!
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The fish looks very different than S. marmoratus (Cabezon) here in northern BC waters and I think Larry is correct, the fish has the markings of S. guttata. Note that there is also a Red variation of S. guttata in California waters.
Tom
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I have collected this specimen from coral reef on the coast of Arabian sea  located on north western part of India. The specimen was living rock crevices situated in sandy substratum. 
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Most likely Ophiothrix, but I don't know the species. Clark & Rowe 1971 is unfortunately not much help for ophiothrichids. Too many species key out as the same despite obvious differences. Ophiothrix needs to be revised.
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The pictures were taken at Armação dos Búzios in Rio de Janeiro, Brasil, at transects made for the research of a monographical paper of one of my students. 
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Thanks for yours answers, we just confirmed the species of these soft corals with profa Debora from Laboratório de Celenterologia - Museu Nacional/UFRJ.
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I want to measure the key nutrient levels such as nitrate, nitrite, phosphate, ammonia and silicate in the coral reef waters directly on the field. Please suggest me a reliable device suiting my purpose.
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Dear Guillermo. Thanks for your response and the information.
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How can live coral cover (%) affects the coral reef fish biomass (gram/500m2) and the Vibrio density (cfu/microliter) according to depth (3m and 10m) 
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Raveena,
The answer to your question depends on the hypothesis you are testing. Based on your question that is not clear.
If you are trying to find out if data sets from various data groups (e.g., reef sites) have same means or not then you can use ANOVA; but only if the data meet assumptions inherent in ANOVA analysis. If you are trying to find out if % live coral cover is different among various reefs sites at two depths then a two-way ANOVA can be used. You can also do that with Vibrio density. Most statistical software programs will do that.
On the other hand we use regression for forecasting and predictions. This assumes that there is a cause and effect relationship between the variables. You can run a regression analysis between % live coral cover (independent variable) and fish biomass (dependent variable) and between Vibrio density (independent variable) and fish biomass (dependent variable).
I do not think you are really interested in correlation since this only tests if there is an relationship between two or more variables, and the strength of that relationship. It does not imply causation.
Have a look at these links:
Hope this helps a little.
Tom
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Marine conservation
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Thank you Nirmala. 
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Currently im doing the coral reef health index with related to 3 index of coral reef cover, fish biomass and cfu of Vibrio sp. After gathering all the data im stuck at statistical analysis for these indexes. 
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depends what you want to achieve ? I suppose they are all time-series data with similar time scales right ? I heard that random forest is a good tool to use.
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My colleague and I are studying the use of natural materials such as bamboo, mahogany and coconut tree as a substitute to the usual cement module. 
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Rene,
Wood and woody debris has been used successfully in freshwater systems to improve habitat complexity, thus increasing biodiversity in many instances (see attached PDFs).
I am not sure exactly what you are planning to use the wood for, is it as a settlement substrate or as construction material to build holding racks on which you can suspend coral cuttings? If you are planning to use wood as a settlement substrate I am not aware of any coral recruitment studies, to date, that have used wood and bark as settlement substrates. In my work on marine fouling communities in Barbados, using Mahogany wooden plates, I found that wood attracted settlement of a diverse fouling community, but I did not find any corals settling on the fouling plates. That is why I used terra cotta tiles in coral recruitment experiments later on.
If you are looking for affordable material, other than cement or terra cotta tiles, then using carbonate rocks collected from land or rock quarries is an option. Old carbonate rock can be sawed into small plates, it’s time consuming but easily done. In Philippines you may also have access to volcanic lava rock and that would make an excellent settlement substrate. Again these rocks can be cut.
I have attached a few papers you may find interesting.
Tom
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I'm making a thesis about Marine protected areas and how effective they are at preserving coral reefs. What would be good factors to consider regarding the health of the reef and the overall health of the ecosystem?
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Gabriel,
The following web site just became available, it's a great source of information on many aspects on MPAs.
Tom
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The photos of the soft corals are below, together with their corresponding sclerites. The samples were collected around Mauritius.
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I want to assess a coral reef that was affected by an earthquake 3 years ago and I'm thinking about adding DNA analysis to determine genetic diversity of the coral species there. What would be a good way to extract coral samples while keeping the damage at a minimum? I'm wary of harming anything alive in the area, especially since it's a Marine Protected Area that is currently undergoing rehabilitation.
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Thanks Mr. Towe!
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My colleague and I conducting a research proposal about using natural materials such as mahogany, bamboo and coconut tree as modules in coral transplantation of Pocillopora verrucosa.
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 Thank you for your replies. I will definitely look into this more. :)
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I've been conducting a field survey on coral skeletons across the coast of Hong Kong. There is however a skeletal remain that I have a hard time identifying as for I cannot find polyps on it. However the growth type and the looks of the rest of the skeletal structure seem to be coral related. Has anyone come up with similar species or would anyone happen to have an idea of what species I might be working with? Any assistance is greatly appreciated! 
The pictures are taken with a 6 x magnification.
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Hi everyone, and thank you for all your answers! They have been a big help and it is wonderful to see that people are willing to assist me with this.
The most plausible genus is probably Euphyllia, as we discussed the matter with fellow colleagues at Hong Kong University that have field experience. They think it's the most plausible genus to have occurred in the coastal waters of Hong Kong. 
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Our research is about the effects of ocean acidification on coral health in Puerto Princesa Bay, Palawan and examining appropriate coral restoration methods.
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KMT:
The link cited by me was a review article on Corals to provide some clues rather than actual transplantation issues. The article is indeed scary and sounds alarming and with rather unrealistic predictions.
We cannot be sure whether Jv down voted your answer or someone else.
Best
Syed
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Our research is about the effects of ocean acidification on coral health in Puerto Princesa Bay, Palawan and examining appropriate coral restoration methods. 
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Even Artificial reefs and fish houses can be used as substrata for coral restoration studies.. a suggestion..
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Morphological characters recorded include colony type, slerite form and size, colour.
Which software do you recommend?
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MrBayes can use morphological data.
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Please suggest me some articles on Oceanographic processes on coral reefs. I'm looking for articles that describes in detail the influence of oceanographic processes on coral reef processes, in general and not specific to any particular reef.
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I also endorse the Erik Wolanski book on the GBR.  The book includes a CD documenting ebb & flow of currents in reefs and how recruitment onto home reefs is assisted by the morphologic influences on the currents.  Cheers
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Photographed in Peninsula Malaysia
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Thanks for the kind help.:)
Best regards,
Hana
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published 
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Thank you very much!
Regards,
Neil
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Oxybenzone is a highly damaging chemical with multiple damaging effects on coral reef populations.  Present in many sunscreens and cosmetic products, it is however poorly legislated.  An exception is Akumal, Mexico, where its use has been banned.  However, no scholarly articles seem to be available comparing the relative health of the coral populations before and after the ban was made.
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I'd read through both already, some great info though, many thanks nonetheless!
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Thank you very much.
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Dear Zhu Xiaojing,
Nr 1. looks like an Ascidia, with their red siphons and a Porifera (in yellow) covering some cirripeds; Nr 2. and nr 3. two species of Porifera ; nr 4. an Actiniaria and nr 5. a Zoanthidea. This is all I can help! I don't identify material until seeing it personally. The poriferans must be examined looking at their spicules, for example; the sea anemone must be identified by lots of characters they present, inclusively their cnidome and so on...
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Hello, I am not sure what kind of disease is presenting this coral, can somebody help me to identify it. Thank you!
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Hi,
I'd say option 1 of Marilyn Brandt but no recovery. This is recent and rapid death. Most diseases are opportunistic infections of a compromised host. This is likely the result of a combination of factors (high temperatures, algal competition, eutrophication, high microbial loads etc). In the end, it does not really matter which specific pathogens cause it and what specific symptoms it showed.
Cheers,
Maggy
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Hello
I want to identify some species from soft corals.
primarily i want to know any parts in anatomy and morphological features that knowing of them are necessary for identification,  such as:surface coenenchyme, interior coenenchyme, polyp walls, calyces, anthocodiae, tentacles, crown, points , polyp armatures and sclerites
i want to know these names refers for which part of octocorals.
please help me to find a useful source for these
thanks a lot
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I agree with Godfried that the guide by Fabricius and Alderslade is a good starting point. However,it stays at genus level ( which is probably very wise) and would not help for  positive identification at species level.  It is a good idea to get familiarised wih the anatomy of the soft corals and in this respect I recommend : Bayer FM, Grashoff M & Verseveldt J 1983  Illustrated trilingual glossary of morphological and anatomical terms applied to Octocorallia. EJ Brill, Leiden, 75 pp..
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So far I cannot decide which is the best material between PVC and galvanized steel for an artificial structure in seawater based on literature. Both seem to be non toxic and quite corrosion resistant. What do you think from your experiences?
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Galvanized steel is much more resistant to strong waves of storms and hurricanes. Thus this material would provide more durable artificial reefs.
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Could you help to identify the species? It was found in coraI reef of Paracel Islands. I appreciate your help very much.
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Thanks for the sincere help. Now we have identified it with your assistance. 
Cloeosiphon aspergillus (Quatrefages, 1865)
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What is the minimum of fish target biomass in the reef to say the fish population is healthy?
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I would be very wary of applying any standard value as a benchmark. You want to make sure your comparisons are valid, so what type of reef do you have? A patch reef? A fore reef, Reef crest? Deep reef? Spur and groove? And so on ... Then, what type of reef did the benchmark come from? Is it the same as what you're investigating? Here in the Florida Keys, I know the fish assemblage on a patch reef is quite distinct from that of a spur and groove, which is different from a deep reef as well. Any comparison between these type would not be valid. 
I think you are better off to compare to results from a reference site that you know is "healthy."
Past that, I also wouldn't use fish biomass as the sole metric of "health," especially reef health in general. The composition of the fish community is just as important. For instance, do you have an appropriate suite of grazers? Various stressors (e.g., over-fishing) can alter the species composition in ways that may not be reflected in total biomass.
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In the study of ancient reefs, especially Permian reef, how can determine the precise time-framework? such as determine which Stage in the Gadalupian series of middle Permian; or detect the timing framework of different parts in a reef (fore-reef. reef-core and back-reef). In addition, for the Permian reef, massive standard fossils are lost, such as fusulinid and conodonts. So I need to get some suggestions.
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Hi,
There might be a possibility to find marine palynomorphs (acritarchs). Even terrestrial palynomorphs deposited in very thin silty beds as a result of e.g. erosive envents/ storms or similar could actually be found. Keep your eyes open for silty, slightly darker layers and make palynology on small sample size. Regards Vivi
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I am currently working on secondary metabolites from fire corals (Millepora spp.). Unfortunately, I am having difficulty at getting this particular sample identified to the species level. Checking the known Millepora species found in this part of the world, the closest match is M. dichotoma. This sample was collected in the Philippines. Can I request for expert assistance with taxonomic identification, if possible. I have included some photos of the animal. Thanks in advance.
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Dear Rafael,
Your identification is probably correct. See:
Razak, T.B., Hoeksema, BW (2003) The hydrocoral genus Millepora (Hydrozoa: Capitata: Milleporidae) in Indonesia. Zool. Verh. Leiden 345: 313-336. 
In reply to Jacskon: Millepora is not a scleractinian. Barcoding only helps when material in genbank has been identified correctly. Use of morphological characters is fast and without expenses.
Best wishes, Bert
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This coral is from Northeastern Brazil.
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Hi Christinne,
You're welcome! I've seen those barnacles on S. siderea many times and I think that Andre may be correct that nutrient levels in the the system may have increased. Good luck!
Best,
C
arly
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Can a photo provide sufficient information about a disease?
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In the Caribbean most of coral diseases can be identified by good photos. Some cannot (some redish or purplish bands in massive corals, for example).
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Specifically Chlorurus gibbus & Scarus niger.
If not in the Red Sea, any other locality could be helpfull.
Thank you!
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The spawning seasons of Hipposcarus harid and C. sordidus were detected in Hurghada to be from May to July based on the gonado-somatic index that reached its maximum in June.
Larvae of unidentified scarid species (possibly Scarus) were collected in August and sepetmber in large numbers indicating a spawning seasons in July and August.
In general parrotfish in the warmer Month of the year in the Red Sea based on reproductive biology and larval fish survey (Abu El-Regal, 2013, Abu El-Regal et al., 2008; Abu El-Regal, 2015).
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I would like to keep the coral samples alive for Zooxanthellae and DNA extraction purposes
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Any Branching corals such as Acropora should be kept in plastic bags half filled with seawater and oxygen. The coral pieces should be fixed in thermocool"" and each piece of coral should not touch each other. Same way other Montiopora digitata collected in plastic bags should be kept in thermocool rectangular  containers with some icecubes for reduction of temperature. care should be taken that the coral pieces should not secrete a large amount of mucus. These corals may withstand 24 hours transportation through air cargo.