Science topic

Cell Differentiation - Science topic

Cell Differentiation is a progressive restriction of the developmental potential and increasing specialization of function that leads to the formation of specialized cells, tissues, and organs.
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Hi everone,
I need to use human M-CSF(100ng/ml) to induce mononuclear cells differentiation into macrophage.
But the issue is,should be use human serum or fetal bovine serum.
Thanks for your answer!
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Hi Jiexun!
During my graduate studies, when conducting this experiment, we used bovine serum.For more details, you may also refer to the relevant sources.
Hope this helpful. For more experimental details or usage information, feel free to follow me and reach out via private message or comment.
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The goal is to check iNeural crest cell differentiation.
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  1. Culture Preparation:Ensure NCCs have been passaged at least once (P1) before cryopreservation. Allow cells to reach 80–90% confluency, typically 2–4 days after seeding.
  2. Cell Detachment:Warm an appropriate amount of StemPro® Accutase® Cell Dissociation Reagent to 37°C. Aspirate the spent medium and add pre-warmed Accutase® to the culture vessel (e.g., 1 mL per well of a 6-well plate). Incubate for 3–5 minutes at 37°C until cells detach. Gently dislodge cells by pipetting or using a cell scraper.
  3. Cell Collection and Counting:Transfer the cell suspension to a 15 mL conical tube. Add 1 mL of Dulbecco’s Phosphate-Buffered Saline (DPBS) to the culture vessel to collect any remaining cells and combine with the initial suspension. Gently pipette the suspension to break up cell clumps. Centrifuge at 300 × g for 4 minutes. Aspirate the supernatant and resuspend the cell pellet in DPBS. Repeat centrifugation and resuspend the pellet in Neural Expansion Medium. Determine cell concentration using a hemocytometer or automated cell counter.
  4. Preparation for Freezing:Dilute the cell suspension in Neural Expansion Medium to a concentration of 2 × 10⁶ to 4 × 10⁶ cells/mL. Mix an equal volume of Neural Expansion Medium containing 20% dimethyl sulfoxide (DMSO) to achieve a final concentration of 10% DMSO.
  5. Aliquoting and Freezing:Dispense 1 mL of the cell suspension into each cryovial. Place cryovials in a controlled-rate freezing container (e.g., Nalgene® Mr. Frosty®) and store at –80°C overnight to ensure a gradual cooling rate of approximately –1°C per minute. Transfer the vials to liquid nitrogen storage for long-term preservation.
Thawing and Recovery:
  1. Thawing:Quickly thaw cryovials in a 37°C water bath until only a small ice crystal remains. Disinfect the outside of the vials with 70% ethanol before opening in a biosafety cabinet.
  2. Cell Recovery:Transfer the thawed cell suspension to a 15 mL conical tube. Slowly add pre-warmed Neural Expansion Medium to the tube to minimize osmotic shock. Centrifuge at 300 × g for 5 minutes and aspirate the supernatant. Resuspend the cell pellet in Neural Expansion Medium supplemented with 5 μM ROCK inhibitor Y27632 to enhance post-thaw survival.
  3. Plating:Plate cells onto Geltrex® matrix-coated culture vessels at a density of 0.5 × 10⁵ to 1 × 10⁵ cells/cm². After overnight incubation, replace the medium with fresh Neural Expansion Medium without ROCK inhibitor. Continue medium changes every other day until cells reach the desired confluency.
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Hi,
I recently began working with THP-1 cells from ATCC and have followed the manufacturer's protocol, incorporating 2-mercaptoethanol and 10% heat-inactivated FBS. I am using RPMI from Thermo (not the ATCC version, Catalog number A1049101).
After three days of thawing the cells, their morphology appeared consistent with the ATCC guidelines (Fig 1). However, I noticed a change in phenotype, with the cells starting to adhere to the 75-flask.
I split the cells in suspension to a 6 well plate to allow a faster growing (also added a new media to the first flask to follow up the behavior). The cells in the flask have begun to elongate and firmly adhere to the bottom (Fig 2), while those in the 6-well plate are also attaching but remain in suspension, but showing a slow growth (Fig 3).
There is any suggestions for achieving a more optimal THP-1 expansion culture that I can subsequently differentiate to M0 using PMA? Thank you!
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To discourage THP-1 cells from attaching, try using untreated or low-attachment flasks for the culture. THP-1 cells can take a while to recover from freezing, so don't expect them to grow much for the first week.
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Hi,
I'm trying to differentiate iPSCs to Immune cells and looking for plates with low-attachment. I came across this reagent "Anti-Adherence Rinsing Solution" by stemcell technologies which is a surfactant solution for pre-treating cultureware to reduce surface tension and prevent cell adhesion.
But, my question is: can I use this solution on any TC treated plates or should it be only from aggrewell brand? Has anyone used it before?
Thanks.
Vertica
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Hi Vertica,
My name is Audrey and I am a Product Manager at STEMCELL Technologies.
The Anti-Adherence Rinsing Solution is effective when applied to any plate type, not just AggreWell™ plates. However, its performance is not optimal on tissue culture-treated plates and you may see failures after a couple of days. 
Our Product and Scientific Support Team would be happy to work with you directly and troubleshoot this issueyou can email them at techsupport@stemcell.com.
I hope this helps!
Kind regards,
Audrey
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The rate of glucose consumption by the neocortex is reduced by over 80% during anesthesia (Sibson et al. 1998), which disables the synapses (Richards 2002) that are supported by glial tissue (Engl and Attwell 2015). It is the synapses that provide the brain with its computational power (Hebb 1949). Disconnected (pig) neurons on life support (e.g., Sestan 2018)[1] have no ability to transfer information, and some might argue that such cells have been reduced to having a computational power below that of a single-cell organism, the amoeba (Saigusa et al. 2008), since they have been taken out of their ‘social’ environment for the expected programming between individual neural members. The organizational life of a multicellular organism is no trivial matter, requiring that each cell be subjected to some biological constraints (Albert et al. 2002) in exchange for the energy efficiency obtained per cell, which scales as the 3/4th power of an organism’s body mass (DeLong et al. 2010; Kleiber 1947; Wells 2007). This process has been shaped by 500 million years of evolution. We are a long way away from merely dumping a bunch of disconnected neurons into a dish that self-organize into a superorganism that supports consciousness, a well-studied topic by entomologist E.O. Wilson (Wilson 2012). Indeed, this calls for taking evolution seriously so that one day we might be able to really engineer a superorganism, which is not trivial (also see ‘converting rodents into humans’[2]).
Footnotes:
[1] The Yale researcher, Prof. Nenad Sestan, has managed to keep pig brains that were detached from the body and on life support (i.e. a warm blood supply mediated by pumps) alive for up to 36 hours (Regalado 2018). This result created quite a sensation at the National Institutes of Health with some even suggesting that this could yield the possibility of studying consciousness and the brain in the absence of the body. A notable observation was that the EEG activity of the pig brains was flat. What is clear from this is that a body is necessary to give the brain life through feedback (Tehovnik and Chen 2015). The challenge now is to determine how much of the body (or its prosthetic equivalent) is sufficient to provide function to a brain. A similar misthinking, as that which motivated Sestan (2018), has occurred by investigators who have hooked up two brains via wires to create the illusion that significant information can be transmitted between them (cf. Pais-Vieira et al. 2013 & Tehovnik and Teixeira e Silva 2014).
[2] Converting rodents into humans: Brain tissues from humans, called organoids, have been implanted into the brains of mice raising the possibility of having human brain cells incorporated into the rodent biostructure (Mansour et al. 2018). Some have speculated that this could endow rodents with an enhanced cognitive ability if the number of human cells were numerous enough (Begley 2017). Note that there are some 71 million neurons in a mouse brain, so this would require a significant addition of organized tissue. A fear persists amongst bioethicists that such implants might give rodents some degree of humanness: i.e., augmented consciousness. But injections of neural tissue into a foreign body are riddled with incompatibilities such as problems with blood supply, immunity, and functional connectivity.
The bird brain, unlike the human brain, regularly injects itself with new neurons via neurogenesis, and therefore it might provide clues about the challenges of adding new neurons into another’s nervous system (Barnea and Pravosudov 2011). Cell proliferation, cell migration via glia, and cell replacement are some of the steps that make up neurogenesis. Riding the brain of old cells is also part of the process (as anyone who has ever received chemotherapy understands). To add, this process is tightly regulated. For example, in the canary, neural augmentation occurs in the vocal control nuclei during periods of song and mating (Goldman and Nottebohm 1983). The point behind emphasizing this detail is to show that for the new neurons to contribute, one might need to reprogram the existing tissues—neurons, glia, epithelia—so that the new neurons are accepted and utilized effectively. At this point, injections of human neurons into a rodent brain may be more prone to producing cognitive deficits than cognitive enhancements.
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A world expert on this topic is Nikos Logothetis who had an entire team of anesthesiologists working on your problem, so he could optimize the fMRI signal in his anesthetized monkeys. Send him an e-mail.
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Hi everyone,
I've been differentiating cardiomyocytes from iPSCs using stem cell technologies' ventricular cardiomyocyte differentiation kit. However, I've recently encountered a significant reduction in differentiation efficiency. I initiate differentiation 2-3 days after seeding, once the cells reach 80-90% confluency. I always use fresh media and supplements. I also tried differentiating cardiomyocytes from two different cell lines, but the outcome was similar. I noticed an increase in the non-CM population, cells appear degenerated around D6-D8 of differentiation and the cells don't start beating as expected. Can anyone give me advice on the subject? Any suggestions you can share would be greatly appreciated.
Thank you
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Hi Hazal,
Unfortunately, not all hiPSC lines are characterized by 100% differentiation efficiency. Differentiation efficiency depends on: the cell line; different lines from a given patient may be characterized by different differentiation efficiency.
hiPSC at higher passages may accumulate mutations in genes important for differentiation and/or lose pluripotency and consequently lose differentiation potential. Therefore, it is worth performing karyotyping and/or STR and analysis of pluripotency gene expression.
Sometimes it also happens that the same protocol runs with different differentiation efficiency. Sometimes it is simply worth performing a cell enrichment procedure to obtain a more pure population.
Good luck!
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Hi all,
Currently, I am trying to implement the Bibel et al. 2007 differentiation protocol from E14TG2a feeder-independent murine embryonic stem cells and facing some issues, primarily concerning impurities/neuronal density within the cultures.
Q1 - what are those cells with rigid cobblestone-like morphology alongside neurons?
Q2 - is it okay that my glutamatergic neurons cluster like that?
On day 8, I dissociate embryoid bodies into single cells and seed NPCs at 1.9x10^5 cells/cm2 on PLO/laminin-coated plates in N2 medium (DMEM/F12, 2 mM L-glutamine, 0.5x PenStrep, 1x N2 supplement and 50 μg/mL BSA), change medium after 2 hours and 1 day. Then on day10, I switch to B27 medium (DMEM/F12, 2 mM L-glutamine, 0.5x PenStrep, 1x B27 supplement).
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Hi,
When we differentiate iPSC/ESC through the EBs stage, we get cells of three germ layers. After dissociation of EBs in your case it would be advisable to enrich the population of neural stem cells/neural progenitors using a cell sorter to eliminate the population of cells derived from mesoderm and endoderm. You currently have a very heterogeneous cell population derived from all three germ layers. You can also see cells that are not fully differentiated.
I suggest:
1) Sorting the cells to obtain the NSC/NPs population before using the medium for neuronal maturation.
Good luck!
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I am working of LUHMES cells lines. I differentiate them for live cell calcium imaging. On the day of imaging, I stained the with fluo4 in differentiating medium (pH=7.4) and incubate the cells at 37C.
I am acquiring images at 20x, time interval of 1s and sometimes 2s, exposure time (100-150ms) for 30 minutes.
After 5 minutes of acquisition, I stimulate them with 2uM of ATP.
When I analyse the images, I dont observe spikes, in the cells and all the cells behave differently. In most of the cells I dont observe oscillations but increasing concentration of calcium. I also try to do imaging in saline buffer and dpbs but apparently cells did not like it and were stressed even before starting imaging.
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Sundas Arshad Try adjusting the following factors one at a time to see which has the most positive effect on your imaging results.
1. Ensure that Fluo-4 is loaded effectively: Optimise loading time, dye concentration and wash steps to avoid excessive background fluorescence that could mask the calcium spikes.
2. The time resolution of 1-2 s may be too slow to capture fast calcium spikes, especially if they are transient. Reducing the interval to 0.5s or even faster may help to capture transient events. However, be aware of increased photobleaching and phototoxicity and find a balance that works for your cells.
3.ATP at 2 µM may not be sufficient to elicit a clear calcium response in all cells, especially if receptor sensitivity varies between cells; consider increasing the ATP concentration stepwise to determine the optimum level for consistent responses. Also ensure that receptors for ATP (such as P2Y or P2X receptors) are expressed equally on all cells and that their activity is influenced by the state of differentiation.
4. LUHMES cells, even differentiated ones, can have different responses depending on their maturity and individual receptor expression. Ensure consistent differentiation of all cells (e.g. by optimising differentiation time or using specific markers to assess maturity) to reduce variability in response.
5. You also mentioned that problems with saline and DPBS cause cell stress, but the differentiation medium seems to maintain cell viability better. The composition of the imaging medium, such as ion concentrations (e.g. calcium and magnesium) and pH buffering capacity, can significantly affect cell response. The differentiation medium is likely to provide growth factors or supplements that help keep the cells healthy during imaging. You may wish to try a modified imaging buffer that mimics the composition of your differentiation medium, but is more suitable for fluorescence imaging. FluoroBrite DMEM or BrainPhys Imaging Buffer could be good options as they provide the necessary nutrients with minimal background fluorescence. Alternatively, you could use HBSS with supplements such as glucose and calcium to better mimic the conditions of the differentiation medium.
6. Finally, if you notice a general increase in calcium levels without oscillations, the cells may be under some kind of stress (possibly metabolic or mechanical). Ensuring gentle handling, using a low-power objective (20x is reasonable, but reducing the laser intensity might help), and minimising time out of the incubator might improve consistency.
I hope these suggestions help to optimise your calcium imaging experiments.
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Hi,
I am working with the U937 cell line, which I wish to use for macrophage survival assays. For my protocol I dilute my cells to 0.5x106 cells per ml (or well) and add PMA at a concentration of 100ng/ml for 24 hours. The cells are then washed with PBS and then serum-free media (RPMI with penicillin/streptomycin) is added for 48 hours before bacteria is added at a MOI of 5:1 (bacteria: differentiated U937s) and I carry out the assay procedure.
However, I'm finding that my differentiated U937s are not adhering to the bottom of the wells and do not have characteristic differentiated-macropage-like cells after the PMA and 48 hours in serum-free medium. They are easily washed off with PBS.
I am not sure why this is happening. Another colleague has had no problem with the U937s.
I am wondering if the U937s are too high a passage number (p38)?
Or if I should try carrying the PMA concentration or some other aspect of my protocol? Any advice is appreciated!
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Areli Munive Olarte Thank you for sharing! I will try to avoid washing steps.
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Hello all
I'm working with SHSY5Y cells to differentiate them to neuronal cells. I'm following the protocol with using RA, BDNF and cAMP for cell differentiation. I tried it different times but it was unsuccessful. Can anyone one help me to do this successfully?
Thank you
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Elham Amini. E.A Differentiation of SH-SY5Y cells should be strictly monitored.
  • Start by culturing SH-SY5Y cells in DMEM/F12 media with 15% serum.
  • Reduce the serum concentration to 10% before seeding the cells in 12-well plates coated with polyethyleneimine.
  • Follow a subculture ratio of 1:4.
  • For differentiation, reduce the seeding density to 12,500 cells per square centimeter.
  • Seed cells in culture media with 10% serum, at a count of 5 × 10^4 per well on Day 0.
  • Replace media every two days until Day 12, reducing serum concentration to 2.5% on Day 2.
  • Supplement all media with 10 µM RA starting from Day 2.
  • Further reduce serum to 1% on Day 6.
  • On Day 12, withdraw serum completely and add B-27, KCl, BNDF, and db-cAMP to the media.
  • Refresh media every four days after Day 12
  • continue 12 to 20 days more.
Feel free to contact us at any time for further clarification.
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I have THP-1 cells differentiated using 20ng/ml PMA and incubated in 12-well plates at 2x10^5. I would like to lyse the cells and extract LL-37 or hCAP18 from my cells to use for an human LL-37 ELISA kit.
I have zero experience with protien extraction so I'm on the deep end with this one. Reviewing literature and consulting with people that have worked on protien extraction has led me in several directions for possible approaches.
I have gotten recommendations to use RIPA lysis buffer, UREA lysis buffer or just cooled PBS for the extraction. I've been recommended to use repeated freeze-thawing or a cell distruptor.
Do I need to use SDS page(gel) to confirm the presence of the protien in solution?
Easy to say I could really use some guidance from anyone that has experience with this particular extraction and ELISA procedure.
Much appreciated.
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For the attached THP-1 cells which have been differentiated, wash the cells gently with pre-cooled PBS, and detach the cells using 0.25% trypsin. Centrifuge the cell suspension for 5 min at 1000×g. Discard the medium and wash the cell pellet three times with pre-cooled PBS. You may add 150-250ul of precooled PBS per 1×10^6 cells to keep the cells suspended. Carry out repeated freeze-thaw cycles by freezing the cell suspension in the freezer and then thawing the cell suspension at room temperature or 37℃ until the cells are fully lysed. This method of lysis will cause the cells to swell and ultimately break as ice crystals form during the freezing process and then contract during thawing. Centrifuge the resultant lysed cells for 10 min at 1500×g at 2-8℃. Discard the pellet and collect the supernatant to carry out the assay. Add protease inhibitor such as PMSF at 0.1 - 1mM in the final volume during cell lysis to prevent protein degradation.
Please note: Do not use RIPA lysis buffer or UREA lysis buffer since there is a possibility of causing deviation due to the introduced chemical substances.
Do I need to use SDS page(gel) to confirm the presence of the protein in solution?
No. But you need to perform the total protein assay (Bicinchoninic acid (BCA) assay) to determine the protein concentration of your lysate. The volume of each sample can be normalized to deliver the same amount of total protein for the assay.
Good Luck!
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I followed an immunofluorescence staining protocol for my cells differentiated into neurons at D14. Using 4% PFA (Alfa Aesar product) for fixation in PBS, I observed that 2-3 out of 8 wells were empty or neurons were drift towards one side of the well after D1. Upon completing the protocol and examining under a fluorescence microscope, I noticed 7 out of 8 wells were empty, with one exhibiting perfect fixation and staining. What might be causing this issue?
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I agree with all of what Leran Mao said, but wanted to stress some of the things. I also work with neurons, so I know they can be tricky. Please check exactly how your plates are precoated. Often, this is enough for cells like fibroblasts or HeLa cells, but neurons (and especially neurites) detach easily and need better/additional coating. Like mentioned, you could try poly-d-lysine, but there are many options out there including laminin or also matrigel or geltrex (mainly for human cells).
Then you need to be as gentle as possible while removing and adding any liquids to the wells. Do not use any vacuum pumps as they are too strong.
10 min of fixation with 4% PFA is perfectly acceptible. One option would be to add 8% PFA directly into the cell culture medium in a 1:1 (vol/vol) dilution. That way you can reduce the number of pipetting steps.
It is great that your neurons form dense networks, but unfortunately that also means that they come off as the whole network, so the key really is good attachement to the bottom of the wells and gentle pipetting.
I hope this helps.
Best of luck,
Selene
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I recently thawed a vial of THP-1 cells . The revival was low but I could see good number of cells growing. But two days later the cell population increased but a lot of cells settled down and now they are differentiated even without a stimulant. I don't see any turbidity in the media. No contamination. Could it be low media volume? Also I left the flask horizontal and not vertical.
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Dear Dr. Ira Sharma
THP-1 cells are sensitive to seeding density. A high cell seeding density could improve THP-1 characteristics by increasing CD14 expression. CD14 is a leukocyte differentiation antigen that exists on the surface of monocytes/macrophages lineage, especially in macrophages, and is a key marker of pro-inflammatory macrophage, and is often used as an indicator of THP-1 cell differentiation. Its expression can be further increased with the induction of PMA and other inducers.
You may want to refer to the articles attached below for more information.
Best.
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I have been growing SH-SY5Y cell line in DMEM/F12 media supplemented with 15% heat-inactivated FBS. For differentiation, I plated 10000 cells per well in 96 well plates and changed media every day, which contained 3% FBS with 10 micromoles RA, and also I have tried with 10% FBS and 10 micromoles RA.
In 3% FBS, I noticed cell death within two days of differentiation, and in 10% FBS after five days the well was almost filled with cells. So what should be the ideal FBS concentration and seeding density for differentiation?
I have attached image of the SH-SY5Y cell line acquired after 5 days of differentiation with 10% FBS and 10 micromoles RA most of the cells look like epithelial
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Harish Kumar B Coat the culture plates/coverslips with laminin after PDL coating, you will get better differentiated cells.
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I have been having issues with my THP-1 cells for most of this year - when I try to differentiate them with PMA into macrophage-like cells about 1/3 of the cells do not adhere properly (either floating or loosely attached) and most of these seem to die. I have tried to wash these cells off and use the ones that are adhered down but during experiments these are not happy and will round up and de-attach.
I have tried everything I can think of - gotten new PMA, tried different PMA concentrations, all new media and FBS, tried different cell densities, different culture plates etc. but nothing seems to make a difference. The cells are also negative for mycoplasma. I have experienced this issue with different batches of THP-1s, including a recently ordered batch from ATCC, which suggests it could be the way I am culturing the cells but I have not changed anything from the way I normally culture them - and they have been fine for 2 years prior to this issue.
I culture the cells in RPMI + L-glut + 10% FBS. I typically use 50 ng/ml PMA for 3 days and then an overnight rest before experiments (but I see this issue within 24hrs of PMA addition). My monocyte cultures do not exceed 1x10^6 cells/ml prior to seeding.
Has anyone come across this issue before?
Thanks in advance for any help with this.
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Hi Michael Förster , thanks for the response.
1. These cells were recently ordered from ATCC and have only been recovered from freezing once, so I would be surprised if this is the cause of the issues. We have used THP-1s that have been frozen for over a year with no issues before in our lab.
2. I keep my cells between 4x10^5 and 1x10^6 cells/ml usually and they never exceed 1.5x10^6 cells/ml so I don't think cell density is the issue either.
3. I am currently in the process of trying the ATCC modification of RPMI but we have never had issues using RPMI + L-glut + 10% FBS in the lab before so again am skeptical this is the issue.
4. For most of my experiments I do indeed seed at 2.5x10^5 cells/ml with a concentration of 50 or 100 ng/ml PMA - but I have tried varying the concentration of PMA as well but see no difference in viability within 24hrs.
Thank you for the advice, and any further insight would be greatly appreciated!
Richard
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Two or three days after removing the differentiation medium, the cells are detached from the culturing plates. I have tried several times, ending up with the same problem. Does anyone have the same experience or have any suggestions to fix this problem?
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As I know that,
1. Make sure the confluent cell is performing at its peak before treating the cell culture with DIM by changing the medium (D+BCS) one day before. I was able to observe that the medium color changes to a yellowish hue near the confluence of the cells, which I believe accelerates the process of cell detachment (Through the use of a microscope).
2. Medium Discard: Take care to work slowly and cautiously. I used to manually use a 1000 uL micropipette and 10 microtips plus 1000 tips.
3. Using a 1000 uL tip and 1000 uL micropipette, dispense medium. Proceed cautiously and gradually from the well's wall (until covering all the cell surface), and then gradually lower (drop by drop, on the center of cell culture surface) the remaining medium.
Dispense the liquid by the well's wall, producing flow to the edge of the cell culture, in my opinion, to promote cell detachment from the edge.
thank you bi Zhang
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Hello everyone,
We needed cardiac cells for a project and obtained H9C2 rat cardiovascular myoblast cells from another laboratory. The cells are at passage 15 and unfortunately have differentiated into cardiomyotubes before. Can this differentiation be simply reversed? Is there anything we can do?
Thank you very much.
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I have never worked with this particular type of myoblasts, but I do work with other myoblasts (C2C12, LHCNM2) and unfortunately, once the cells have differenciated into myotubes there is almost nothing you can do ... Dedifferenciation could be something to try if you have the time and energy, and I think some protocols exist but I am not at all familiar with them, and I don't know if myotubes are an easy target (if a target at all).
In my opinion, the best (and easiest) thing to do is to ask for new cells, if you can. The "high" passage doesn't mean they will have differenciated, but as each passage is a form of stress for the cells, and includes the risk that the cells reach more than the adequate confluence, the risk of receiving myotubes is higher : I would ask if possible for a lower passage.
Hope my answer helps a bit ! Good luck for your experiments !
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My research project aims to investigate the effects of bilirubin on the maturation and function of fibroblasts, I was going to differentiate mesenchymal stem cells into fibroblasts to then investigate. However, I have now found current studies to describe the two as indistinguishable, this is including their morphology, gene expression patterns, surface markers, proliferation, differentiation, and immunomodulatory capacities. Any advice is much appreciated.
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Collagen VII positive for fibroblast CD 106 positive for MSC but absent in fibroblast
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I am trying to differentiate H9c2 cells into cardiomyocytes using 10 nM all-trans-retinoic acid. The cell growth seemed to be decreased after treatment with 10 nM RA. I plated H9c2 cells on T75 (35K/ml) and treated with 10 nM RA containing 1% FBS.
I have two questions.
Q1. Does the cell grow after differentiation or do I have to differentiate everytime to run the experiment?
Q2. Can I switch back to 10% FBS after the cell differentiate or do I need to treat 10 nM RA daily?
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Hi Taeyoon
Have you found the answers to your questions?
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I am passaging my hiPSCs with EDTA and E8 medium. However, I have noticed the presence of spontaneously differentiated cells in the final passage.
What other techniques are available to improve the purity of the final passage, and is there any literature on this?
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Hello Joshua,
Generally, Essential 8 media suppresses the differentiation. I am not clear what you mean by final passage. In my experience you can keep culturing hiPSC in undifferentiated state for years in E8 media and using EDTA.
Here are somethings you may attempt:
1. Revive a new passage of hiPSCs which were previously frozen and were undifferentiated
2. You may have to remove some differentiated colonies prior to passaging in your existing culture
3. Add 10-20ng/mL of bFGF to existing E8 media in the current passage
4. Try making fresh E8 media, as if you make small volumes of complete E8 media prior to use and not use E8 media made more than a week before
I suggest you revive new hiPSC vial and avoid using E8 media that was made more 7 days ago.
All the best.
Thanks.
Prasad.
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Hello All,
I'm working on SHSY5Y cells differentiation. My problems are:
1-After adding the final differentiation media to the cell cultures, they started to detach from the plates, and became floating day by day. However, I've coated the plates previously by Poly-D-Lysin.
2- After adding the final differentiation media, cells look clumped.
Can someone suggest me differentiation protocol or any suggestion to solve my problems.
Thanks in advance.
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Pls refer to the following articles,
DOI: 10.3791/53193
And:
Optimising parameters for the differentiation of SH-SY5Y cells to study cell adhesion and cell migration, written by Susan Dwane 2013
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For analysis of C2C12 myoblast cell differentiation in Cell Profiler Software.To assess Myosin Heavy Chain expression in differentiated C2C12 cells.
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Thank you..I have already checked that site but not pipeline that I want is not in the list. So,I tried another software for myotube assessment. Myotube Analyzer app looks quite useful and I will try it out.
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I have cultured N2A cells and I'm trying to induce them to differentiate into neurons using retinoic acid. Could anyone recommend any protocols for inducing N2A cells differentiation into neurons using retinoic acid, with specific quantities of time, concentration and number of cells?
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*Neuro2a cells can be differentiated in reduced serum (2% FBS) media.
*10uM RA in 2% FBS media is sufficient to observe differentiation after 7 days.
* Neurite growth and differentiation markers can be observed by staining with B-III Tubulin, MAP2 in confocal microscope.
Thanks
Samir
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hi everyone, I am working on differentiation of fibroblasts to iPSCs. I am planning to. use matrigel coated plates, but am a little lost on what concentration I should use. I am using Corning matrigel (REF 356234). The batch I have has a protein concentration of 8.9 mg/mL. the data sheet just says to not dilute to less than 3 mg/mL. in your experience what isna good concentration to use for this application?
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Dear Patricia,
in our lab we also work with iPSCs and use Matrigel. We dilute it to 5 mg/mL concentration as a working stock/aliquots. Since each lot has a different protein concentration, you have to calculate the specific volume of media needed each time.
This gets further diluted for each coating so that we end up with 200 µg per well of a 6-well-plate.
For a more detailed protocol you can have a look at this paper:
Generation of human iPSC-derived neural progenitor cells (NPCs) for drug discovery of neurological and mitochondrial disorders
(Zink et al., Bio-protocol, 2021) DOI: 10.21769/BioProtoc.3939
Good luck with your experiments,
Selene
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Hello,
I am looking for a protocol to differentiate dendritic cells from monocytes.
I would like to isolate monocytes from PBMCs using the EasySep™ Human Monocyte Isolation Kit (StemCell).
I found information that DC can be obtained by culturing monocytes with IL-4 and GM-CSF for several days. Various cytokine concentrations and culture times are reported in the publications. Has anyone differentiated DCs this way and has a good protocol?
Or are you using the ImmunoCult™ (StemCell) dendritic cell culture kit?
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Hi Klaudia,
My name is Sneha Balani and I am the Product Manager for Immune Cell Culture Products at STEMCELL Technologies.
I recommend using the ImmunoCult DC Culture Kit for differentiating DCs from Monocytes after isolation with EasySep. We have optimized our product to consistently provide good results while saving our customers the time of sourcing and testing individual cytokines. You can find the full protocol here: https://cdn.stemcell.com/media/files/brochure/BR27017-Dendritic_Cell_Research.pdf
I hope this helps! If you have any more questions, feel free to contact our product support specialists at techsupport@stemcell.com.
Kind regards,
Sneha Balani
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We are analysing the expression of Afp (endoderm marker), Sma (mesoderm) and Tuj1 (ectoderm) by mESCs that have been cultured in spontaneous differentiation conditions for 10 days with immunofluorescence staining, and we are detecting tha signal for more than one marker on several cells at the same time, i.e. we observe cells that are positive for Afp and for Tuj1. Is it possible that a single cell expresses more than one of these markers at once?
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Spontaneous differentiation is a rather chaotic process which can lead to several intermediate states. Is this occurring in vivo or in vitro? I’d suggest you let that differentiation run for longer and see if you still see those mixed/intermediate phenotypes.
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I would like to perform real time study on the effect on various differentiation conditions on the collagens production in MSCs during differentiation into chondrocytes. I would like to visualize it via fluorescence microscopy (with the specific fluorescence microscope placed in the incubator). Is it possible to stain collagens in living cells (without fixation and permeabilization)?
Many thanks in advance.
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I differentiate N2a cells with 20 uM retinoic acid 1% serum in a 24 well plate. During the differentiation process that lasts 4 days, I change the medium every two days, but on the 4th day the cells start to die. How can i make cells live for a long time (10 days)?
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Chandra Somasundaram I am using Gibco DMEM low glucose. Actually I also tried to change it every day but the result did not change.
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Hello everyone.
I am going to analyze differentiated cardiomyocytes (CM) via confocal microscopy. However, I struggle to attach CM properly to the glass slide/plate. Although I coated the glass slides with LM-E8, the CM could not attach firmly and started to detach after adding 4% PFA to cell staining.
Does any appropriate coating for CM culture over the glass?
I appreciate any recommendations and comments.
Best,
Fatemeh.
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Dear Fatemeh,
Maybe you look through this protocol:
Reagents
  1. Experimental animals (129S6 wild type mice- Taconic Laboratories) ! CAUTION Experiments involving live rodents must conform to local and national regulations.
  2. Paraformaldehyde (Sigma-Aldrich, USA) ! CAUTION Avoid skin and eye contact- Vapor is carcinogenic and toxic.
  3. Phosphate Buffered Saline- pH 7.4 (Sigma-Aldrich, USA)
  4. Cell TakTM cell and tissue adhesive (BD Biosciences)
  5. 0.1 M sodium bicarbonate, pH 8.0, filter sterile the buffer
  6. Triton X100 (Sigma-Aldrich, USA)
  7. MitoTracker Deep Red 633 for staining mitochondria (Molecular Probes, USA)
  8. Alexa Fluor 568 phalloidin for staining F-actin (Molecular Probes, USA)
  9. SYTO 11 Green-Fluorescent Nucleic Acid stain for staining the nucleus (Molecular Probes, USA)
  10. Bovine Serum Albumin (Sigma-Aldrich, USA)
REAGENT SETUP
  1. Tyrode’s solution- The modified Tyrode’s solution (pH 7.4) contained the following (mM): 126 mM NaCl, 4.4 mM KCl, 1.0 mM MgCl2, 18 mM NaHCO3, 11 mM glucose, 4 mM HEPES, 30 mM butanedione monoxime (BDM), and 0.13 U/ml insulin, and was gassed with 5% CO2/95% O2 (For a detailed description of the cardiomyocyte isolation procedure, please refer to Su et al. 200110
  2. Culture medium: composed of 5% fetal bovine serum, 47.5% MEM (Gibco Laboratories, Bethesda, MD), 47.5% modified Tyrode’s solution, 10 mM pyruvic acid, 4.0 mM HEPES, and 6.1 mM glucose and finally maintain the isolated cardiomyocytes in a 5% CO2 atmosphere at 30 °C until use.
  3. Fixative: Freshly prepare 100 ml of 4% PFA (wt/vol). Dissolve 4g PFA in 100 ml PBS. ▲CRITICAL STEP This solution must be made fresh. To dissolve the PFA efficiently, heat the solution to ~70 °C under constant stirring with a magnetic stirrer in a fume hood. Cool the PFA solution, filter it to avoid precipitates in the fixative.
  4. Coating chambered coverglass with Cell Tak cell adhesive: Coat the chambered coverglass with Cell Tak adhesive (1.7 µg/mm2). From the size and number of vessels to be coated, calculate total surface area. The best density of BD Cell-Tak depends on specific application, or cell type. A preliminary dose-response experiment is recommended to determine optimal density. High densities will not necessarily improve performance, so the “minimum effective density” should be determined empirically. Dilute the correct amount of BD Cell-Tak into the buffer, mix thoroughly, and dispense within 10 minutes. ▲CRITICAL STEP If the pH in the coating buffer is not between 6.5 – 8.0, Cell-Tak will not perform optimally. An aid to attaining this pH window is to use a volume of 1N NaOH equal to half the volume Cell-Tak solution used in combination with a neutral buffer. For example: Use 10 μl Cell-Tak, 285 μl Sodium Bicarbonate, pH 8.0 and 5 μl 1N NaOH (added immediately before coating) to make 300 μl Cell-Tak solution. A minimum incubation of 20 min is recommended, but longer times will not adversely affect adsorption, even if all the liquid evaporates. Pour off, or aspirate, the Cell-Tak and wash with sterile water to remove bicarbonate. If vessels are to be used later, they should be airdried and stored at 2-8 ºC up to two weeks or with dessicant up to 4 weeks.
Equipment
  1. Temperature controlled centrifuge
  2. Nutator
  3. Chambered coverglass (Lab-Tek, Nalgene Nunc, USA)
  4. FV300 confocal IX81 microscope (Olympus Microsystems, USA) and Leica TCS SPE confocal microscope with an oil immersion objective of 60x (NA 1.45) for image acquisition or similar
Procedure
  1. Isolation of adult ventricular cardiomyocytes: Adult mouse ventricular myocytes were obtained from the laboratory of Dr. William H. Barry (Cardiology Division, University of Utah, Health Sciences Center, Salt Lake City, USA) and were isolated from 129S6 wild type mice (Taconic Laboratories) according to previously reported methods (10) (Note: As this protocol deals with immunocytochemisry and confocal microscopic imaging, isolation of adult ventricular cardiomyocytes is not elaborated).
  2. Suspend the isolated cardiomyocytes in culture medium composed of 5% fetal bovine serum, 47.5% MEM, 47.5% modified Tyrode’s solution, 10 mM pyruvic acid, 4.0 mM HEPES, and 6.1 mM glucose. Maintain the cells in a 5% CO2 atmosphere at 30 ºC until use.
  3. Label the cells with MitoTracker Deep Red 633 for staining mitochondria (100 nm in the culture medium, M-22426, Molecular Probes) and incubate for 30 min while at the CO2 incubator ▲CRITICAL STEP staining for mitochondria should be done in live myocytes as the MitoTracker will stain mitochondria only when it is alive. The concentration and timing for staining should be standardized by the end user.
  4. Wash the cells with PBS twice and resuspend in fresh PBS ▲CRITICAL STEP All the steps after labeling with MitoTracker should be performed in the dark or by covering the tubes containing the cells with aluminum foil to avoid photo-bleaching of the dye.
  5. Fixing and processing of cardiomyocytes for immunocytochemistry: Pellet the isolated cardiomyocytes using low g force (300 g for 1 min, 30 ºC). Suspended the pelleted cells in 4% paraformaldehyde in PBS maintained at 30 ºC and fix for 30 mins with gentle mixing of the contents by inverting the tube using a nutating mixer. ▲CRITICAL STEP It is important to maintain the cells at 30 ºC when they are viable and centrifuged at low g force to pellet cardiomyocytes, since these would affect cell viability and morphology. ?Troubleshooting
  6. After fixing, pellet down the cells (300 g for 1 min) and resuspend in PBS.
  7. Layer the cells over chambered cover glass coated with Cell-Tak cell and tissue adhesive. ▲CRITICAL STEP Adhering the cardiomyocytes to the chambered coverglass is a difficult process due to its size, and it is important to coat the cover glass with a cell adhesive.
  8. Leave the fixed cells layered over the chambered cover glass undisturbed for 2 hours at room temperature. Once the fixed cells settle to the glass surface, wash the non-adherent cells using PBS.
  9. Permeabilization of cardiomyocyte using Triton X-100: Permeabilize the fixed cardiomyocytes which are adhered to the Cell Tak coated cover glass surface using 0.1% Triton X-100 in PBS (v/v) for 3 min at room temperature. Wash the cells with PBS (2×2 min) and process for immunostaining.
  10. Blocking: Treat the permeabilized cardiomyocytes with blocking solution containing 0.01% BSA in PBS (w/v) for 30 mins at room temperature. ▲CRITICAL STEP This step helps to prevent non-specific binding of the fluorophores and is important while using primary and secondary antibodies.
  11. Immunostaining of cardiomyocytes: Label the fixed cells with Alexa Fluor 568 phalloidin for staining F-actin (1:40, A-12380, Molecular Probes), and SYTO 11 Green-Fluorescent Nucleic Acid stain for staining the nucleus (1: 500, S-7573, Molecular Probes) for 30 mins at room temperature in dark ▲CRITICAL STEP The concentration and timing for staining should be standardized by the end-user. If the cells are stained with a primary antibody, then the user has to incubate a secondary antibody after washing the cells with PBS (2×2 mins). The timing and concentration of the primary and secondary antibodies should be standardized by the end user.
  12. After incubation with the fluorescent stains, wash the cells with PBS (3×3 mins) and maintain in PBS with antibiotics added to it. ■ PAUSE POINT The chambers containing the cells can be maintained in dark at 4 ºC until imaged to avoid photo bleaching of the fluorophores. It is highly recommended to image the immunostained cells as soon as possible.
  13. Confocal imaging: Images were obtained and processed using FV300 confocal IX81 microscope (Olympus Microsystems) and Leica TCS SPE confocal microscope with an oil immersion objective of 60x (NA 1.45) at the University of Utah School of Medicine, Cell Imaging Facility, Salt Lake City, UT, USA. The excitation lasers used were Argon 488 to image nucleus stained with Syto 11, HeNe laser 543 and 633 to image F-actin stained with Alexa Fluor 568 phalloidin and mitochondria stained with MitoTracker Deep Red 633 respectively. Three dimensional z-projection views were obtained by deconvolution and volume rendering of the z-stacks using Olympus FluoView software and Leica Confocal Software (Leica Microsystems, Version 2.5, LCS Lite, Mannheim, Germany). Volume visualization of the stacks and 3D movies were generated using Voxx (http://www.nephrology.iupui.edu/imaging/voxx/). (11)
Timing
  • Steps 1–2: 2-3 h
  • Step 3-4: 1 h
  • Step 5: 1 h
  • Steps 6-8: 2-3 h
  • Step 9: 10-15 min.
  • Step 10: 30-45 min.
  • Step 11-12: 1-2 h
  • Step 13: 2-3 h (depending on the number of channels, image quality, step size, kalman averaging, availability of equipment and expertise of the user, this timing varies)
Troubleshooting
Steps 1-4 It is important to handle the cardiomyocytes as gentle as possible while they are viable. The optimum temperature should be maintained and low-speed centrifugation in a temperature controlled centrifuge should be carried. The pipette tips should have a wide bore (by cutting the tip of the pipette tips) so that the cardiomyocytes are not strained while transferring.
Anticipated Results
With applying the above-described protocol, it should be possible to get images of isolated adult mouse cardiomyocytes which has been immunostained using confocal microscopy. The shape and morphology of the cardiomyocytes is retained even after fixation.
Figure 1 Confocal images of fixed cardiomyocytes with pseudo-colors for each staining.
Figure 1a Isolated mouse ventricular cardiac myocyte stained with MitoTracker Deep Red 633 for staining mitochondria shown as blue, Alexa Fluor 568 phalloidin for staining F-actin shown as red and SYTO 11 Green-Fluorescent Nucleic Acid stain for staining the nucleus shown as green. The images are deconvolved using Fluoview software from a series of image stacks obtained using Olympus Fluoview confocal microscope FV300.
Figure 1b Isolated cardiac myocyte stained as above shown as X-Y view. The orthogonal projection on the left of the image is the cross-section passing through the myocyte along the Y-Z view. The orthogonal projection on the bottom of the image is the cross-section passing through the myocyte along the X-Z view (images obtained using Leica TCS SPE confocal microscope).
Supplementary Figure 1a-d Isolated mouse cardiac myocyte pseudo-colored showing different staining in different panels and the fourth image on the bottom right is a merged image of all three panels (images obtained using Leica TCS SPE confocal microscope).
Supplementary Movie 1 The above described image stacks were used to construct a 3D image to visualize the distribution of cytoskeletal proteins and organelles within the cell.
References
  1. G. Bkaily, N. Sperelakis, and J. Doane, Am J Physiol 247 (6 Pt 2), H1018 (1984).
  2. N. Cambon and M. A. Sussman, Methods in Cell Science 19 (2), 83 (1997).
  3. M. A. Sussman, S. Welch, N. Cambon et al., Journal of Clinical Investigation 101 (1), 51 (1998).
  4. F. Appaix, A. V. Kuznetsov, Y. Usson et al., Exp Physiol 88 (1), 175 (2003).
  5. E. Ehler and J. C. Perriard, Heart Fail Rev 5 (3), 259 (2000).
  6. R. R. Kaprielian and N. J. Severs, Heart Fail Rev 5 (3), 221 (2000).
  7. A. V. Kuznetsov and R. Margreiter, Int J Mol Sci 10 (4), 1911 (2009).
  8. A. V. Kuznetsov, J. Troppmair, R. Sucher et al., Biochim Biophys Acta 1757 (5-6), 686 (2006).
  9. A. V. Kuznetsov, Y. Usson, X. Leverve et al., Mol Cell Biochem 256-257 (1-2), 359 (2004).
  10. Z. Su, K. Sugishita, M. Ritter et al., Biophys. J 80, 1230 (2001).
  11. J. L. Clendenon, C. L. Phillips, R. M. Sandoval et al., Am J Physiol Cell Physiol 282 (1), C213 (2002).
Sathya Srinivasan, Experimental Imaging Centre, University of Calgary
Correspondence to: Sathya Srinivasan (sathya_sr70@hotmail.com)
Source: Protocol Exchange (2011) doi:10.1038/protex.2011.235. Originally published online 11 May 2011.
Best regards,
Alexandr
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Hello everyone,
I am using retinoic acid to differentiate SH-SY5Y cells into neuronal cells to generate a Parkinson's disease model. I will perform MTT assay before using a neurotoxin of interest to generate a PD model again for another set of experiments but I am not sure if I have to differentiate the cells again because I have seen that the same cell line is used undifferentiated as well, for example in Alzheimer's disease research.
Is it a "must" for in vitro PD model?
Thank you
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Dear Dr Samir Ranjan Panda Thank you for the information.
I performed neurite growth analysis and TH staining in differentiated SHSY5Y before and obtained results with no problem. Considering the info you gave, it seems ideal to me to differentiate the cells for the MTT protocol as well.
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I would like to generate some iPSC cell lines from T1D donors and matched controls. I am interested in re-programming kits that work well with fibroblasts and are non-integrative, and preferably non-viral. The downstream beta cell differentiation is complicated and difficult enough that I don't want to also have to heavily troubleshoot the iPSC generation. So, the kits, though expensive, are very attractive to me. Are there any kits that are better than others for fibroblasts? Any kits you've used that you suggest avoiding for one reason or another? TIA
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Hi Elizabeth - Cytotune is cited as the best, but if you do need a non-viral system, Epi 5 Episomal reprogramming system is a good second choice (https://www.thermofisher.com/order/catalog/product/A15960?SID=srch-srp-A15960) . BW tony
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Dear all,
Do you have the experience in MSC chondrogenic differentiation and immunostaining at the specified time points?
I used to work with adherent cells only so I feel a little uncertain. As I understand from the literature, differentiated MSCs form aggregates and start to float in medium. Is that true? If so, how does one fix, stain, and then visualize the aggregates? Can I do it without the access to the mictrotome and paraffin embedding etc.? As far as I understand, the aggregates might have even 400 um in diameter so quite large objects.
Thank you.
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Thank you so much. I am really interested to know the progress. Please keep me posted if you can. I will be looking forward to hearing your success.
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Hello! I currently have differentiated iPSCs I wish to clean up. I use mTESR with matrigel coating.
ReLeSR selectively dissociates healthy stem cells, however even on quick release (1 minute), all the cells immediately dissociate, and I am unable to isolate healthy stem cells.
I think that it might be due to me passaging very regularly (once every three days), and the cells have been adapted and now dissociate easily.
I would also like to attribute that to the reason why my iPSCs are differentiated. I supplement them with ROCK inhibitor (5uM) every time I passage. Given that they are passaged once every three days, that means they are in ROCK inhibitor once every two days... could this be the reason my iPSCs are so differentiated, as I did not give them sufficient time to recover from ROCK inhibitor?
However, the reason why I passage so regularly is because I know need to passage once I see differentiated cells... Do you suggest I completely omit ROCK inhibitor during passaging, and would it help the maintenance of my iPSCs? For individuals with experience using ROCK inhibitor during passaging, do you feel that frequent passaging causes spontaneous differentiation of iPSCs even when you remove ROCK inhibitor the next day (before 24 hours)?
I would really appreciate any advice that would help me out of this predicament, thank you so much!
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Hi,
The incubation time with ReLeSR is too long. You need to optimize your incubation time. Seed iPS colonies at a much lower density.
If the iPSC colony confluence is very high on the passage day, ReLeSR reagents may not be able to distinguish between differentiated and undifferentiated cells. You need to increase the time between passages and reduce the iPSC seeding density.
Part of the iPSC lineage is very unstable in terms of phenotype. This means that cleaning must be done regularly. Sometimes by regular manual removal of colonies with incorrect morphology (every day). Additionally, they use ReLeSR before the passage should be performed.
If a high number of differentiated iPSC colonies is observed, positive selection should be used.
At the beginning:
- use a low seeding density (e.g. 20 most beautiful colonies (positive selection) per well of a 6-well plate);
- extend the time between passages before applying ReleSR (iPSC colonies should be large, highly compacted, in confluency 60-70%);
- optimize the incubation time with ReLeSR;
- use DPBS without calcium and magnesium;
ROCK inhibitor does not have to be used for every passage. It is recommended in the situation of iPSC thawing and positive selection only.
Good luck!
Justyna Augustyniak
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Hi folks,
I extracted BAL fluid from mice to check total and differential leukocyte counts, as well as inflammatory cytokines and chemokines, and now I'm wondering how long I can keep my samples at -80 degrees to check the same. Suggest some practical experiences or methods for a better result.
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After collecting BALF, keep it on ice and do the cytospin within 2-3 h.
If you want to collect the total cells, after collecting BALF, centrifuge it at 5000 g for 10 min in a microfuge centrifuge. The pellet can be suspended back in ice cold physiological saline for staining and visualization under microscope. All these should be done keeping the samples on ice and within 2-3 h of BALF collection. I would suggest getting it done as son as BALF gets collected!
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I am interested in studying targeted cancer immunotherapy, particularly, I want to prevent the tumourigenesis of the cells. I would like to know if there is any genes or promoters that activate differently than normal somatic cells.
I recognise the TERT gene that will activate once the cells are highly proliferative, but it also expresses in the early stage of cell differentiation process as well. So, I need to find others instead.
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Many cancers are not linked with any specific gene. All cancers begin when one or more genes in a cell mutate. Genes tell cells how to make proteins to keep the cell working. If the genes mutate, these proteins change, too. This can make cells divide too much or too quickly. When this happens, the cells live much longer than they normally would. These cells grow out of control and form a tumor.
So, mutation in the gene brings about a change. It creates an abnormal protein, or it may prevent a protein’s formation. An abnormal protein provides different information than a normal protein. This can cause cells to multiply uncontrollably and become cancerous.
The same goes with TERT. The TERT gene plays important roles in normal biology, and perturbations of its regulation play a critical role in a variety of pathological states, especially neoplasia. TERT plays a central role in modulating telomerase activity in tumors, conferring the hallmark of immortality on neoplastic clones.
Since you are interested in targeted therapy, you need to identify the specific genetic changes that help a tumor to grow and change. This will be the drug's "target." An ideal target for this kind of therapy would be a protein that is present in cancer cells but not in healthy cells. Once you have identified a target, then you can develop a drug treatment that attacks it. Targeted therapy can do different things to the cancer cells they target. It can block or turn off signals that tell cancer cells to grow and divide, or prevent the cells from living longer than normal, or destroy the cancer cells.
You could consider the cell cycle genes which are essential for the survival and proliferation of cells, especially the checkpoint genes (mad2, Myb, Rad51-like) and S phase genes ( CCND1, CDK1, CDK2, CDK4, CDKN1A, CDKN1B).
Best.
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I think my cells have differentiated but I'm not sure.
How can I be sure of the identity of my cells?
My project depends on the accuracy of this cell line.
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Hi Zeinab. To confirm the differentiation,
step 1: I will revive a frozen vial and harvest the cells for total RNA from both sets. (Revived one and currently cultured).
Step 2: I will isolate RNA. After synthesizing cDNA, I will check the mRNA level expression of specific gene targets either expressed in parental cell lines or in the differentiated ones, based on the availability.
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Hello,
I am not sure if my ipsc cells' morphology look normal. Can anybody tell me?
Thank you!
Franklin
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I suggest you seed the cells or clumps at low density.
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I want to know after generating Knockout (KO) cell line of Human embryonic stem cell, how we can differentiate cell based on cell quality. Any specific protocol available which leads the specific results?
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I am not sure, if I am getting your question correctly. Generally speaking, it is hard to morphologically differentiate between KO and normal hESCs unless your gene of interest has significant effects on hESC morphology, say causes a defect in cellular structure related proteins. Normally, clonal selection and characterization of multiple clones by PCR would be the best way to generate and develop a KO hESC line. Moreover, even if you where to morphologically identify KO vs controls, how would you isolate them or separate them for future work, as hESC grow as colonies?
Hope that helps.
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Dear Colleagues
I am going to do cell differentiation of pre-osteoblast to mature osteoblast by giving induction from my materials.
Is that possible to grow the pre-osteoblasts cell line (MC3T3-E1 Subclone 4 CRL-2593) in the DMEM medium (product code LM 001-05). We have this medium in our lab. However, I saw that a lot of papers used a variety of MEM alpha (recommended by ATCC is MEM alpha without ascorbic acid for base medium, product code A1049001).
If I should use MEM alpha, could you kindly recommend what kind of MEM alpha should I use, please? Do I need to use MEM alpha included ascorbic acid or not? In our lab we have L-ascorbic acid separately (product code 255564).
Thank you and best regards.
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Hello! I've worked with MC3T3-E1 cell line for a diverse assays, mainly without differenciating them. The commercial medium you mention is the one I used for culture the cells and perform my tests. I strongly recommend you that medium if you want to grow the cells without any differentiation; it is very effective, the cells grow very fast, showing good morphology and good behavior. If your goal is to differenciate them, I indeed recommend using a medium with ascorbic acid.
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Hi everyone,
We are currently doing C2C12 cell differentiation and unfortunately, even after 4 days in the differentiation medium, the cells elongated but we do not see cell fusion at all. We stained cells with MyHC and all the cells are MyHC positive and single nucleated.
We used just a simple protocol for differentiation with DMEM, 2% heat-inactivated horse serum, 1% PenStrep, and the medium is refreshed every other day. The C2C12 was from the other lab and we don't know which passage they were in.
Could anyone suggest the possibilities that can happen to affect C2C12 cell fusion to form myotubes?
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It can take longer than 4 days. In my experience it never takes less than 5 or 6 days, and usually 7-10 days is the sweet spot for half-decent myotubes.
Growing myotubes isn't easy: once they've fused and aligned nicely they start getting contractile pretty fast, and once contractile they're very likely to pull themselves off the plate surface. The window between "not ready" and "too differentiated to be useful" can be quite small.
What are you growing them on? Collagen? Matrigel?
And what antibody are you using to label MyHc? Myogenic cells shouldn't usually start making contractile proteins until they're fused and quite far along the differentiation pathway, so getting robust expression in mononuclear cells seems...unusual.
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My SHSY-5Y cell line morphology is changing on it's own and getting a morphology that resembles differentiated cell line. Could anyone provide me an insight of what is happening.
I am also attaching a picture of the cell line here with.
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Possible causes:
1. Mycoplasma contamination - try to check whether there is mycoplasma by mycoplasma quick detection kit or mycoplasma culture
2. Too acidity - change the media before it turned completely yellow
3. Over trypsinization - never trypsinized more than 5 min
4. The culture medium never warm up to 37°C before and during culturing
5. Cell passage too late
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By a 'higher differentiation capacity' I mean that it would be easier to differentiate them– especially without adding a pool of chemical factors.
I think cell lines might be tricky as they are somehow modified but stem cells (MSC, iPSC) might be more potent as they are there to differentiate.
Any insight is welcomed!
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Thanks Marcus O. Muench . Right, so we will keep the cell line out. But lets imagine that we have a scaffold that is expected to mimic the physiological niche and we only want to use a normal media (not including growth factors) for differentiation. Which one of the 'stem cells' will be prone to differentiate more readily?
I know that with iPSs, they change the media in a time specific manner and use special media (and growth factors in each interval) to get a differentiate cell. However, with MSCs its probably more easier; simply use a differentiation media throughout the experiment.
I believe iPSCs are 'wilder' and need to be controlled (=tamed) very closely thus maybe it is harder to differentiate them with biophysical cues (no special chemical involved)
Thanks Malcolm Nobre for the explanantion.
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Hello,
I am trying to differentiate HEK293 cells to induce ciliogenesis. I have seen in papers that this is possible by serum starvation but I obtain a mix population of differentiated cells and many dividing cells.
Thank you very much in advance!
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Dear all,
I am differentiating BM cells into BMDM using L929 conditioned media. Briefly, at day 0, I isolate BM cells from mice and seed it to 100pi petri dish using complete with 30% LCM (BMDM media). At day 1, i collect non-adherent cells and seed it (1x10^6 per dish) to 100pi culture dish using BMDM media. And i add 10ml of fresh BMDM media at day 4 and change half of this media to fresh BMDM media at day 7.
In this process, my cells differentiate too much and reach 100% confluency at day 5~6. Non-differentiated cells floats or attached lightly above the monolayer of differentiated cells. I wash them with 1X PBS before detachment of BMDM to eliminate them, but is it okay to just run the experiments? I'm afraid that i may have done something wrong during culture.
Also, morphology of differentiated cells are different with other reference images. Mine is more attached to the dish than other images, and have morphologies close to round shape with several short branches like LPS-stimulated cells. It also has something looks like vacuoles. I attached images which is similar with my cells.
I want some clues for my questions.
Thank you for reading.
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The images look like activated macrophages, which makes me suspect LPS/endotoxin is present in your L929 conditioned medium. You should test your conditioned medium for endotoxin activity.
The other potential cause of this phenotype is that 30% L929 conditioned medium is actually a significant amount of M-CSF, enough to cause overgrowth.
In colony assays that were done in Richard Shadduck's lab, 50 ul of 1/2x LCM would yield 150 colonies from 100,00 mouse BMC in 1 mL assay plates, which translates to 3000 Units/mL. 30% LCM would be 900 Units/mL. We always used 50 units per microgram as a specific activity for M-CSF; that would mean your cultures have on the order of 18 micrograms per mL M-CSF. You should try lower concentrations of your L929 conditioned medium, like 5% or 10%.
In addition, when I worked with Christa Mueller-Sieburg prior to coming to work with Dr. Shadduck, we were characterizing the growth factor for bone marrow stromal cells, which was later shown by Elena Deryugina to be M-CSF. The concentration that induces stromal cell growth and differentiation was equivalent to 20% L929 conditioned medium or 10 micrograms/mL M-CSF. So you may be generating a mixed culture of BMDM and BM stromal cells, which have a fibroblastic morphology.
Alternately, you can avoid the potential complications of working with conditioned medium by using commercially available mouse M-CSF.
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I am characterizing differentiated cells derived from a specific hPSc line. The idea is to compare the differentiated cells in "Semi-matured" state to a later "matured" state. I would like to know, whether I should use the gating applied on "Semi-matured" cells to "matured" cells as well, or should I use different different gating for these two populations?
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Theoretically yes, you must acquire all the samples on the same settings but practically you need to change settings as per your cell type. E.g. if you are acquiring CD4 T helper cells in unstimulated vs PHA stimulated sample you will get your lymphocytes on lower left side of FSC vs SSC plot in unstimulated sample, where an oval gating will serve your purpose wherein your T cells will change the scatter upon stimulation with PHA and make a rocket cluster, where you will have to gate accordingly to cover whole rocket and perform liberal gating.
SO, as you are saying your cells are being transformed in two different cell type, you are free to do acquisition settings as per your need. it is justifiable.
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We are doing studies on B cell differentiation and would like to expand human B cells in vitro.
Thank you
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Thank you so much. That celline does not seem to be generally available. It also would be much better to have an adherent cell line so one does not transfer the sCD49L expressing cells with the growing B cells. Thanks again.
Thomas
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I differentiated MC3T3-E1 cells to osteoblasts by using differentiation kit. I put some vials of differentiated cells in nitrogen tank. Recently, I used 2 vials of same passage number and I saw these little things only in one of my flask, and the other flask was fine.
I put cells from both flasks on my biomaterials and did XTT, and there were no significant difference between data!
Does anyone see anything similar to these in their culture medium?
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Yeast
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We are trying to differentiate SH-SY5Y human neuroblastoma cells to individual dopaminergic nerve cells by using retinoic acid. The protocol takes 6 days to complete but our cells form clusters during day 4-5 and since the cells at the top can't use enough medium they start to die.
What could be done to make those cells grow as individuals and see the connections between the neighboring cells?
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Try seeding cells at 1 × 10^4 cells/cm2 confluency in FBS 10% medium for 24h and then performing the rest of the protocol with SFB 1% medium. Lower FBS concentrations will diminish proliferation and avoid cluster formation. The following article has more details on the protocol.
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Hi,
I applied on PC12 cells 100 ng/ml NGF and incubated for 72 hours to differentiation. After 72 h, approximately most cells differentiate and then I applied an anticancer drug but all of the cells including the control group died. The medium I used while applying the drug is the same as the medium I used for differentiation. I couldn't find my mistake. I'm waiting your idea or advice.
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By control group, do you mean cells grown the same condition but without the cancer drug?
You need a no drug control under the same conditions as the drug but without drug. And yes the control cell must have high survival.
It is possible that extended serum starvation induces apoptosis in these cells. It is critical that you know the survival tendencies including plating density and resistance to serum starvation induced apoptosis.
Understand that serum "starvation" often refers to the time since fresh serum (media change).
Cells are supposed to die without serum. The more "normal" a cell line is, the more sensitive it is to serum starvation.
72hours with no fresh serum in many cell lines increases apoptosis without any other treatment.
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I'm having an issue with differentiaon media (DM) of MC3T3-E1 Subclone 4 cells I am following the ATCC recommendations for media and supplements (alpha-MEM + 10% FBS + 1X anti/anti (Pen/strep/amphotericinB)) and culture conditions for revival.
I use using DM composition- 10mM BGP; 100ug/ml L-ascorbic acid; 10uM Dexamethasone, but there is debris formation and cells are not looking healthy
Any suggestions as to what might be the problem or recommendations for the same?
Below I have attached the pic of cells after DM 4days
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Please check your control cells if they are healthy.
The 100 nm concentration of Dex alongwith ascorbic acid and beta glycerophosphate works fine.
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I have been having difficulty differentiating C2C12 cells into myotubes. I use DMEM media with high glucose + glutamine + sodium pyruvate supplemented with 2% horse serum and 1% penicillin/streptomycin. However, I have noticed most published work on C2C12 cell line use DMEM high glucose + glutamine, no sodium pyruvate. Could the presence of sodium pyruvate in my media be affecting my differentiation?
Is sodium pyruvate not suitable for C2C12 cell lines?
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Thanks Mbadhi!
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I'm working with H9C2 cells for the first time and I've been following protocols I could find on papers and research gate. For the sub-culture, I seed 10k cells/cm2 and split the cells every 2-3 days as needed. I've then continued with a differentiation protocol in which I added 1 uM or 10 nM RA in dark daily for 5-7 days, and measured cardiomyogenic markers such as Actc1, Myl2, and Tnnt2. However, I saw no difference in gene expression (qPCR) in RA-treated cells compared to DMSO-treated although there were morphological differences. For the differentiation experiment, I seeded 30k cells/cm2 on a 12-well plate.
Is there anything I'm doing not right? For example too high seeding density? Can anyone experienced with handling H9C2 cells please help?
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I have used rat neonatal cardiac myocytes and performed hypertrophic stimulation and RNA analysis as well. Its quite a nice model (of course I am heavily biased here). Once you have a working assay and are familiar with the isolation process it is quite robust. A good technician that has general experience with cell isolations can perform that assay very well after being supervised thrice, as far as my teaching experience goes in that matter, so that is not the tricky part if you can get somebody on site. Getting there in my own took me about two years, though, so I would defintely advise on teaming up with someone xD then again If that H9C2 would also take 2 years to get up and running, the neos might be the more accepted model anyways. Also of course primary cells mean paperwork.
One thing to keep in mind generally is that transfection works rather poorly in cardiac myocytes (single digit percentages). I do not know whether the H9C2 cells are easier in that regard, but especially if you want to do RNA analysis you might want to sort your cells beforehand and/or consider AAV oder AdV Gene transfer, that should get about 60+% of them, depending on the virus quality.
Best of Luck!!
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Hi everyone,
I just differentiated my neuroblastoma SK-N-SH cells with 10µM Retinoic Acid in 6 days and I got the pictures of non-treated and treated cells below. Do you (especially neuron experts) see any differences in the morphology of the cells?
Thank you so much!
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Jason Hamlin : Thank you so much for your answer. I will do further experiment to clarify it.
Jyoti Priyadarshini Shrivastava : Yes, with no-experience on neuron, it is difficult for us to confirm it.
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HI everyone! I am going to start culturing RPTEC/hTERT renal proximal epitelial cells and I have several questions about it. First of all I want to know when the cells are proliferating and when differentiating. I have cultured immortalized podocytes previously and these cells proliferate at 33ºC and differentiate at 37ºC, so i have clearly differentiated the two populations. But in the case of RPTEC/htert cells I dont know how to know it, because I think they dont have the SV40 T antigen to thermoswitch them. So, are cells proliferating and differentaiting joint? How to know which are mature cells? And if I want to treat them with something, I will treat proliferating and differentiating cells?
Another question is the appropiate culture medium for these cells. I have read that the supplied medium from evercyte or ATCC in some cases didn't work very well, and as well the mixture of DMEM/HAMs F12 . So the best option is to buy DMEM (low glucose with glutamine?) and F12 separately, plus glutamax, EGF, ITS, Penicillim/Streptomycin and hydrocortisone? and FBS is necessary or not?? Because I have read the two options
I would appreciate any answer from peolple working with this cell line.
Thank you in advance
Ana
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Ana Ortega Hello, can I ask you some tips for cultivating podocytes
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Dear everyone, 
I am currently trying to differentiate MGE-01 cells into platelets. Since I never worked with MEG-01 cells before, i run a pilot using these two paper as reference:
·         24h – pseudopodia (Yang et al., 2016) with 80 ng TPO
·         48h – platelet-like particles (Risitano et al., 2012)  with 100ng TPO
I seeded the cells in a 6 well plate with a cell density of 0.3 x 106 and added 100ng of TPO. I checked the cells every 6 or 12 hours and my results are: 
1.No pseudopodia appeared at 24h 
2.No proto-platelets appear at 48h
3. "Pseudopodia" appeared at 60h in my sample.
My questions are:
1- How long should it take to differentiate platelets adding 100 ng of TPO to the medium? Is there anybody using a higher concentration?
2- During the days of incubation should I add TPO everyday or just when I change the medium?
3- I attached two pictures at 60hours from when I added 100ng of TPO. I would like to you if the "spider like cells" that i see are megakaryocites with pseudopodia or something else. 
Every kind of help would be much appreciated.
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Hi~
I'm also on MEG-01 these days, could you please give more information about TPO? is that Thyroid peroxidase?
An article says:
L8057 cells were cultured in RPMI 1640 medium and stimulated with 500 nM PMA(phorbol 12-myristate 13-acetate (PMA)) for 3 days for mature.
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I have read so many papers on vitD3 acting as differentiation agent. I tried this and found that I got differentiation only once when I freshly dissolved calcitriol in ethanol and thereafter I never observed even after increasing concentration. It's seems to be highly air sensitive. Do I need to make aliquots in anaerobic glove box? Or could you suggest me the right way to use it?
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Terence McGuire - Hi Terence. Sorry to stretch back to an old thread; do you recall what you used to store your working stock aliquots in? And do you recall using low-retention tips? Both to combat the 'stickiness' of VitD metabolites. Thanks
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I am wondering if anyone has had success with in vitro polarization (via cytokines) of Jurkat cells. My goal is to understand the affect of a drug on Treg induction and differentiation. I understand that this would be reasonable using human/mouse primary T cells, however this may not be practical and or feasible in my case, at least for now. I would like to first explore the effect of this drug on T cell activation/differentiation using Jurkat cells. I am having trouble finding literature on this topic. Thanks in advance.
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Hi Ben, here is an earlier paper from 2012 on the topic:
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  • I wonder whether expression of certain hox-genes determines the development of  tissue/organs-specificly regulatory T cells and/or Foxp3gene expression
  • This would probably relate to retinoic acid (like) regulation
  • another question is, if you can analyze hox-protein by İCC flow, which protein should I look for.
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Our group is starting to work with BAL samples from mice. One of our aims is to analyze BAL cells by differential cell count. Many authors report doing a cytocentrifugation, but we don't have this equipment. Is there an alternative to cytocentrifugation? Does anyone have a protocol that can help us?
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you can make spot or smear specimens. to make the cells adhere to the object glass you can coat using poly L lysine or APES. Make cell supension, better in complete medium or liquid that contains protein such as FBS or other serum. make small spots or smear. you can dry first or wait until nearly dried, then fix using 100% methanol or 40% formol saline or 95% alcohol, or other fixative.
the fixative will coagulate protein that retains the cells, so the cells will stick to the object glass. I usualy used 100 % methanol and drop the methanol on the object glass, let the liquid go down and it will be dried quickly.
However, the background may be noisy, not as clean as if you use cytospin.
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Hi,
What is the common B cell differentiation stage used for hybridoma technology? I understand that these are antibody producing B cells upon the injection of antigen, but do people use mature B cells or fully differentiated plasma cells to fuse with myeloma cells?
Or is the specific cell differentiation stage less of a concern?
Best,
Cece
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Early B cell stage is not useful as a fusion partner on hybridoma technology. Actually please do not prefer naive mature B cell ..You have to wait Ig class switching after immunization for good antibody production (Ig class switching needs T cell help). If you use early stage B cell (immature or naive mature B cell), yo can get just low affinity IgM.
Sincerely
IShak
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Lately, I've been having a lot of difficulty differentiating L6 myoblasts and I'm unsure what I'm doing wrong.
After adding the cells to 6 well plates (200,000 cells per well) and allowing them to grow for 48 hours in growth medium (GM: AMEM supplemented with FBS and antibiotic-antimycotic agents to final concentrations of 10 and 1%, respectively), I wash with PBS and shift the cells to differentiation medium (DM: AMEM as above except that 2% HS replaced 10% FBS). Within 48 hours of differentiation, the majority of the cells die and the remaining cells differentiate very poorly such that no myotubes form by day 5 of differentiation.
The only thing that I can think of is that the wells are too confluent by the time that I transfer the cells to DM. Attached I've added a picture of a well just prior to transferring it to DM - you can see that it is nearly 100% confluent.
Any help would be greatly appreciated!
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Seed 80,000 cell/ml. after 2 days replace for 2% FCS (no need to change to HS) and 7 days later you'll get perfect tubes
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Does anyone know of studies investigating the optimal well sizes for growth/hypertrophy of C2C12 myoblast-derived myotubes following differentiation using standard serum starvation? I find that many papers don't report well-sizes for their experiments, however I tend to think that myotube differentiation and growth might be affected by well area, regardless of similar confluence level across different well sizes at the onset of differentiation. Any thoughts/experiences?
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Nice question but not sure if well size affects the process of differentiation. I believe that it should not as cells are grown to more than 80% confluence and then starved or incubated in reduced serum media. Irrespective of size, cells will grow to a certain confluence and then differentiate upon reduction of serum. I have tried different size dishes, flasks and 6, 12 and 24-well plates for both primaries and C2C12 cells, they have differentiated similarly. I
I agree with Patrick Davis but I have never tried smaller well-plates.
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It's time to passage my iPS cells, so I add 1 mL Accutase per well for 5 min at room temperature (edge has folded back). But after aspirating Accutase and rinsing with fresh mTeSR1, I observed that undifferentiated cell colonies are still attaching.
In the below link, it mentioned that "differentiated cells are more strongly attached than undifferentiated cells", although I didn't find its reference source.
My question are: (1) why differentiated cells release first after treated with Accutase? (2) whether I distinguish the cell differentiation correctly? Here, I regard fig 1 as differentiated cells, and fig 2 as undifferentiated cells.
Thanks for any answers or suggestions on this issue.
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thank you both very much for the answers Ron Hrstka and Ellen A G Chernoff . I have used ReLeSR to detach the undifferentiated iPS cells, it does work well.
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I am totally new to feeder-dependent iPSC culturing. Previously I was doing on feeder-free iPSC culturing. Hence I encountered that the iPSCs which grow on the feeder are sparse and not growing as typical colonies which are compacted. From the attached photos, under 4x magnification some cells are individually apart from each other while some are in close contact with each other. Under 10x magnification, those "individual" cells look big without a defined shape, I am not too sure are they cells differentiated or undergoing apoptosis. Before changing medium iPSCs look a bit spiky in shape, after changing, they are more round in shape and starting to form a slightly more round colonies. Can anyone with experiences provide me some advice on this. Thank you.
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Your feeder cell density is far too low. In the old days when I used feeders, I used 1.8 x 10e6 cells per 100mm plate.
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Hello everyone, I would like to start single-cell sequencing on differentiated cells from human iPSCs. I want to discuss here the more cost-effective way to obtain publication-quality data from the analysis.
If you have already experienced a certain device or method, please share the annual costs including the system itself, reagents, installation fee, training fee, software, and maintenance fee, etc.
Or should I simply send my samples to the sc-Seq service?
Thank you very much for your time and info in advance.
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Dear Yuichiro,
Thanks for your question. It is actually a very important one. I have used multiple platforms for sc-RNA-seq: Fluidigm C1 and Takara ICELL8. Between these two, the ICELL8 offers the best deal in term of data quality and price per experiment. That said, these two platforms require an initial investment to get the machine (at least 100 K euros). If your institute has already a machine I would suggest to go with them.
Another important point before setting up an experiment like that is what scientific question are you trying to address? Are you looking for cellular heterogeneity? Are you looking for a rare population? Are you interested in low abundant genes like those coding for transcription factors? This is critical because each sc-RNA-seq platform has its strengths and weaknesses which can determine if you can successfully answer your question.
Best regards,
Christophe
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I did a bone marrow dendritic cell differentiation (7days) using Gm-csf at both day 0 and day 4,
the question is, Which CD is more specific marker to check ex-vivo Dendritic cell differentiation using flowcytometry?
i am wondering whether CD80, 86, 40, MHCII and CCR7 will be the best option?
or CD11c, CD123?
or there is a more specific marker to validate the differentiation?
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Dear Moustafa,
CD209 (DC-SIGN) as well as CD11c would be most appropriate marker for DCs.
Otherwise, there is a long list of CD markers used for DC phenotyping.
All the best.
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I differentiated human neural progenitor cells into neurons. These cells were relatively fragile and were difficult to attach on the cell surface. I have to immunostain these cells, thus I was wondering if the temperature of PFA may affect the immunostaining results obtained from the cells.
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the question was -whether temperature may impact ICC results. It may or may not, depending on the antigen, the epitope and your antibody (monoclonal, polyclonal). Some people fix cells for 1 min in 1% PFA to get ICC to work because overfixation causes loss of ICC signal. A quick answer -if your antibody and the antigen are not impacted by longer fixation then staining at room temperature, say 15 min, 4% PFA, is ok. If your antibody is not working well to begin with, then try to reduce the length/strength of fixation by either making it shorter, or/and diluting 4% PFA down to 1% or even 0.5%, or/and fixing at 4C or on ice. As one person replied earlier - this is a chemical reaction, and it goes faster at room temp. Also, if you are comparing results from several different experiments done at different time - pick one way you are fixing cells for ICC and stick to it, otherwise it may be difficult to compare the signal because of the reason mentioned above (over-fixed cells may produce weak/no signal with SOME antibodies). Polyclonal antibodies have higher chance of working better even with overfixed cells because they can detect several epitopes. PFA (reversible fixative) gradually converts to glutaraldehyde, irreversible cross-linker, and room temp and light accelerate this process, yet 10-15 min is a short time. If you are fixing for a long time and at room temp then it can make a difference.
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I am doing a primary culture, and I have some problems while culturing the cells.
When I culture the cells from primary to passage 1 and 2...
lots of cells differentiate and stop dividing before I get a sufficient amount of cells.
How can I prevent primary cells from differentiating and divide well?
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I use primary keratinocytes (KC) from the oral cavity, and experience that several factors can start early differentiation. Saurabh Mandal and Yakun Wu mentioned several factors:
- area (ours KC do well in T25 but not bigger flasks)
- number of cells per area (to few KC will start early differentiation)
- medium (to much calcium starts differentiation)
- splitting (never grow to confluence; check media used to split, return quick back to right medium; our KCs do well for 6-7 passages but start to differentiate after)
- age of the donor (we have bad experience with elderly donors)
- site of biopsy (KCs from some sites grow better then other sites)
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I am looking to know other people's experience with seeding C2C12 cells on 96 well plates. Preferably, I want to minimise the proliferation time but optimise the conditions for differentiation to occur, likely between 70-80% confluency. Thank you in advance for your assistance.
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Brian P Carson hi i think 5000 cells per well is very less because next day you need 70 % confluency atleast.it sould be 15000 cells per well.
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I am struggling to find information about this- I'm not sure if it is something so obvious that it is assumed rather than stated in reseach papers (!) or if it is just not the case, or maybe I am just looking in the wrong places!
I am trying out some differentiation protocols, and wondering if I can use a comparison of proliferation rates (for example with BrdU assay) between the 'control' stem cells (human foetal neural stem cells) and experimental cells to show they have differentiated
Any ideas gratefully received-
Thanks
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If you are working neural cancer stem cells, check if your cells make neurospheres, that can be a good and simple strategy to study stem cells. In theory each sphere comes from a cell with stem cell properties, that means that if stem are differentiating the sphere forming capacity of those cells is going to be reduced. It is a very simple and effective assay. Clonogenic assays will also give information of the proportion of stem cells in your cells line.
In regards to our paper, we saw decrease expression of genes related with stemness only. We did not study genes associated with differentiation, we were studding loss of stemness, we didn’t study to what those cells differentiate. I do remember however, that in a human cell line (MCF7), despite we saw reduction of mammosphere forming capacity and clonogenic potential, PCR results were not as clear as they were on the mouse model.
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In the literature I found this: "after 3 day post-confluency, cells are differentiated." But how? With or without FBS? If with, than 1, 5, 10% or changing? How to prevent outgrowing? Thanks
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Starve your cells so they all go to G0 phase and then after 24 hours look for cilia
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Dear,
I haved try to test the effect of some small molecules differentiate the aml cell line, including HL60 and PL21 cells, by using the PMA as positive control. CD14 and CD11b were measured for charachterization of differentiated cell (monocyte/macrophage).
My results revealed that the PMA-induced group express both of CD14 and CD11b. However, the small molecules-treated group expressed only CD14 (higher than PMA group), but not CD11b.
I wonder to explain the results but not sure what is cell type that express CD14 but not CD11b.
Thank you
Best,
Sarit
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Well... I'm not sure there is such a thing as a CD11b negative myeloid lineage cell. So.. I guess what we are left with is 1) the small molecule is downregulating CD11b, and is inducing an abnormal CD11b- macrophage population. OR 2) the closest "natural" possibility from the myeloid lineage that I can think of is a dendritic cell. Although I still thought they express low levels. Anyway... I guess you can check to see if they express CD11c.
I more favor the #1 since expression of CD11b can be suppressed.
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I have been trying to generate RPE from iPSCs. Though I'm able to get the cobblestone morphology in the differentiated cells, they are not getting well pigmented. Please share your insights on the same.
Thank you.
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I want to study the differentiation of macrophages into M1 and M2 macrophages populations against a bacterial protein. I'm using THP1 monocytes as a model. So, is it necessary to differentiate the cells with PMA or LPS. PMA differentiates monocytes to macrophages. So, if I would further treat them with a bacterial protein, will they differentiate into M1 or M2 further? or it will be ok, if I stimulate them with LPS and then treat with bacterial protein and analyze for M1 and M2 differentiation?
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To look at macrophages rather than monocytes you would definitely need to treat first with PMA. This treatment will give you "M0" macrophages. Following PMA, LPS/IFNg treatment will give you "M1" macrophages, while treatment with IL-4/IL-13 will polarize to "M2" macrophages. Given all of that, if you want to look at how the bacterial protein polarizes macrophages, I would differentiate the monocytes to macrophages with PMA, then treat with the protein to look at markers of "M1" or "M2" (and use LPS/IFNg treatment as a control for "M1" polarization and IL-4/IL-13 treatment as a control for "M2" polarization. If you want to look at the effect of the bacterial protein on repolarizing "M1" or "M2" macrophages, you would need to differentiate with PMA and then differentiate to "M1" or "M2" with LPS/IFNg or IL-4/IL-13, respectively before treating with the bacterial protein. Good luck!
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Hello
Just wondering when I stimulate the HL60 cells with DMSO and use them around D7, do you advise to change the medium just like how we normally pass down the cells? Or should I keep them in the same medium until I use them?
And whenever I change medium is it necessary to add DMSO? 
Because I found that most of my cells were dead if I don't change the medium over time
Can somebody advise me on this?
Thank you
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A protocol for HL60 cell culture and differentiation (with 0.8% DMF) has been described in detail by the university of Alabama at the following link https://www.vaccine.uab.edu/uploads/mdocs/UAB-MOPA.pdf. We get high number of cells, and cell viability close to 90%, with this protocol.
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Nerve Growth Factor (NGF) consists of NFG alpha, NGF Beta, and NGF Gamma. NGF is used for neuronal cell differentiation to be more neuron like. Can I use plain NGF Beta to differentiate Sh-Sy5y cells (neuroblastoma cells from the bone marrow), or must I use NGF? Thanks!!
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Hi,
NGF beta should work well for neuronal differentiation.
All the best !
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These cells have not yet been stimulated to differentiate.The first day after the cells are resuscitated, they were in good condition. But on the second day, a large number of cells were clustered together. Under a high power microscope, the cells were observed as Fried eggs.I don't know if these cells have self-differentiated,and whether the follow-up experiment that PMA-induced cell differentiation would be affected ?
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Does your cells resemble like these?
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Lately I've been running into issues with my frozen stocks of 3T3-L1 cells post-inducing. In the past, I've had no issues with my stocks and were able to successfully unthaw, differentiation and use for whatever assays. But as of late, it seems as though some issues with the differentiation process have occurred.
For starters, the monolayer in the pre-induced 3T3-L1 cells are perfectly fine. However, there are some "dead zones" (i.e. areas where there are no cells, aside from this one object that the cells are not growing around). Unsure if that is contamination or not.
Then when it comes to differentiation, I follow the same protocol that has been published and used before (i.e. induction media with MDI for 48 hours > change into insulin media for 48 hours). But now, I'm getting this webbing/perforation in the monolayer that hasn't occurred before.
The questions I have are the following:
1.) Can these cells still be usable when there is intense webbing such as in the photos presented?
2.) What could be causing this webbing to occur now and how am I able to fix this?
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The only major change that I have done is go from Grenier Bio-one plates to the Corning 3603s that I'm currently using. At the moment, we are trying to do a couple of tests to assess which method would be good for us:
1.) Use of rosiglitazone with or without IBMX
2.) The use of a larger surface area well plate (i.e. 12-24 well plat) or a protein coated 96 well plate (i.e. collagen I).
Other than that, we haven't deviated much from the provided ATCC chemical induction protocol provided. How have you changed out the media from the induction to post-induction/insulin media in large well formats?
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Retinoids act through regulating cell differentiation, cell proliferation and apoptosis.They have immunomodulatory and anti-inflammatory effects. Though the mechanism of actions are similar, some retinoids like Acitretin, Isotretinoin, Bexarotene are not effective in CHE but Alitretinoin is effective. What is/ are the underlying causes of this difference in action?
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There are many reasons and explanations. In the first line it is on one side a question of the drug's pharmacodynamics and pharmacokinetiks, and on the other side a matter of the individual organism response. Since the diagnosis of chronic hand eczema encompasses a number of different conditions, one can not expect the same therapeutic response, even if clinically the conditions are very similar. I am not sure that we really completely do know and understand the ethiopathogenesis of these diseases, and also the mode of action of retinoids. And that is the reason why pharmacotherapy is more a skill than a precise scientific procedure, although it should as much as possible always be the latter.
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Hi
Does anyone have a detailed protocol for bronchoalveolar lavage (BALF) in rats? So far my LIVE/DEAD cell ratio in the BALF is very low (20%/80%).
Also can anyone share a Wright-Giemsa staining protocol (Cell differentials) in the BALF?
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the attached docs give a detailed method
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Sphere formation is known among normal or cancer stem cells. But whats the underlying mechanism of cells to come together and make sphere?
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A sphere is the lowest energy configuration for bound system (like a bubble). Other cell shapes require focal adhesion on the outside of the cell or asymmetrically organized structures like actin filaments on the inside of the cell. Cells often temporarily "abandon" the production of some adhesive and structural proteins when changing states to redirect energy to the new process and allow for some reorganization.
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If we differentiate several stem cells (such as ES and iPSC) toward one specific tissue (such as muscle), how can we compare the product of these inductions (differentiated cells) with normal mature muscle?
Is there any study about it for all tissues?
Is there any publication about the best efficient stem cells for specific differentiation?
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Hi, I hope this could help you:
In NCBI, go to "GENE" section and choose your gene of interest related to "muscle".
As a exemple, I put "MYF5" Homo sapiens, this is the result:
In this window, you can see the locus your gene of interest (in this case MYF5) in human genome.
If you go down, you can see a section "EXPRESSION" (just below the intron - exon structure of your gene of interest.
In "EXPRESSION" section, you have 4 different RNA-Seq from different adoult tissues:
- Tissue-specific circular RNA induction during human fetal development
- RNA sequencing of total RNA from 20 human tissues
- HPA RNA-seq normal tissues
- Illumina bodyMap2 transcriptome
In the exemple I'm using (MYF5), i choose the second:
  • Project title: RNA sequencing of total RNA from 20 human tissues
  • Description: RNA sequencing of total RNA from 20 human tissues
  • BioProject: PRJNA280600
  • Publication:PMID 25970244
  • Analysis date: Mon Apr 2 15:22:22 2018
  • In BioProject you have all raw data from human adult tissues, like muscle, you can down-load it and comapre with your transcriptome.
  • Good Luck
  • Pierluigi
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For those of you have experience in this field, I would like to ask you about this.
I performed 3T3-L1 for my research with usual method such as:
1. Seed the cell in 96 wells plate in proliferation medium (DMEM high glucose + 10%calf serum 1%penicilin-strptomicyn + Na pyruvat 1mM)
2. 2 days after 100% confluence (day 0), change the medium with differentiation medium (proliferation medium + 0.25 µM Dexamethason + 0.5mM IBMX + 10µg/ml Human Insulin (I2643 Sigma))
3. On day 2, change the medium with maintenance medium (Proliferation medium + 10µg/ml Human Insulin (I2643 Sigma)), and wait until the cells mature.
In my experience, I could see mature adipocyte beginning at day 6.
However, the problem is the mature cell distribution was not good. They were not spread well. Some spots have more mature adipocyte, others not. After Day 10, I usually only found +/- 40% mature cells per well (picture was attached). Only in the well treated by troglitazone, I could get 90% maturation per well.
Is this normal? What percent of mature cells per well do you normally get in your experience?
Is there something wrong in my protocol?
Thank you.
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We found that we can improve the percentage of differentiation if we keep the differentiation mixturen for 3 instead of 2 days. And differentiation is further improved with the presence of pioglitazone in the differentiation mixture. I hope this information will be useful.
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Hello everyone!
I am currently working with THP-1 cells and I would like to know if I can freeze the THP-1 cells once it gets differentiated into M1 and M2 macrophages?
Because differentiating the cells everytime is taking a lot of time!
Has anyone already tried to freeze these cells and were the cells normal (functional) after defreezing it? Or any drawbacks by doing so?
Any kind of suggestion regarding this would be really helpful.
Thanks for the time and Thank you in advance.
Kavyashree T. U. :)
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Hi Kavyashree,
I am currently trying to polarize THP1 to M1 and M2 macrophages. I use 100ng/ml of PMA for 48hrs and treated them with either 2ng/ml of IL-4 and IL-13 for 48hrs for M2 markers and 100ng/ml of LPS and 2ng/ml of IFN-gamma for 48hrs for M1 (both in the absence of PMA). Then I would leave them in fresh media without any stimulants for 2-3 days. However, when I do FACs to comfirm the polarization, my M2 cells are negative for CD206 and M1 are negative for HLA-DR. I havent tried any other markers and I cant figure out what is wrong. Do you mind sharing with me your protocol and if you have had any trouble? what markers do you look for?
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I am working with Thp-1 cells differentiated into macrophages using PMA, I seed them in T25 flask so they will be adhered, and then i need to treat them with S.aureus broth media. so how long should the treatment be for ? and what is the volume required to be added to the culture ? I seed six million cells with six ml media in T25 flask .
thanks in advance
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Shen-An Hwang the part is using bacterial growth media and the 10% volume of the media. so actually I used bacteria growth media, after removing bacteria, to infect THP-1 cells and I used 10% volume of the media. the results were promising, but when I am to write up, my supervisor asked me to cite this with a reference that used this approach.
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Hi all,
I am performing experiments with the chondrogenic cell line ATDC5. Does anyone have an idea how I can prove whether I only have differentiated cells in my culture after chondrogenic differentiation and no "contamination" with undifferentiated cells?
And if some cells are undifferentiated, how can I get rid of those? Are there f.ex. any surface markers which ATDC5 cells only express in differentiated state (would be interesting for MACS isolation)?
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Best markers are Collagen type 2 and aggrecan . Immunofluorescence would be the best tech
Best
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Dear all,
I want to perform RNA-seq on differentiating cells. The population is mixed with 80-90% of the cells expressing the marker of my desired cell population - both in control and treatment groups.
My question is whether the population is pure enough for RNA-seq?
What is a pure enough population, and what will be my cut-off percentage?
Thanks!
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Dear all,
I join the discussion as I am looking for a similar answer.
I would like to perform bulk RNASeq to compare two iPSC-derived cell populations.
The first population is pure, therefore no problem.
The second population (cell type A) is co-cultured with some primary cells (cell type B, not of interest).
By magnetic separation I can obtain a population of cell type A with purity of 95-96% (with only 4-5% cell type B "contaminant").
Is this level of purity sufficient?
I am considering to also include in the experiment the cell type B fraction (purity 98%) in order to have the transcriptomic profile of this cell population and to identify whether in the samples of interest (cell type A) there are some transcripts that belong to cell type B and exclude these from the analyses afterwards.
Would this be a good strategy or is unnecessary?
Thank you all for your advice!
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To MSCs differentiation experts:
I have seeded UC-MSCs on decellularised scaffolds for only 3 days with no differentiation media used at all as this is the clinical protocol in place ? then RNAseq for transcriptome profile of cells. The main aim was to unravel cells behaviour on these scaffolds by looking at either trophic immunoregulatory factors or differentiation if any?
I wonder if 3 days of culture is enough to trigger differentiation of the cells.or it is too early for the cells?
I have checked for the classical markers ( SOX 9/ runx2 etc) but have not found any. Is there any early markers that could indicate cells differentiation that I can look for??
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Good evening
in our puplication we had used adiogenic differentiation of Wharton jeley MSC
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We are trying to differentiate THP-1 cells to macrophages and dendritic cells.
For macrophages we culture the THP-1’s with 10 ng/mL PMA for 3 days and then we rest them for 3 days more.
For dendritic cells we culture the THP-1’s with rhIL-4 20ng/ml, rhGM-CSF 100ng /ml, rhTNF 20ng/ml, Ionomycin 200ng/ml for 3 days.
We initially seed 200K/mL THP-1 cells in RPMI1640 + 10% FBS + L-glutamine before differentiation. After the differentiation we remove the cells from the flasks using trypin and a cell scraper. After counting we observer a recovery of only 10-30% (DC) and 40-50% (MQ) of the initial 2 million THP-1’s that were seeded.
Does anybody has some advice on how to improve our cell recovery? Thanks in advance!
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Cells with a macrophage phenotype tend to resist to trypsin dissociation. I've used cold PBS and a cell scraper to recover differentiated macrophages before, but that reduces cell viability. Promocell have available a Macrophage Detachment Solution DXF... could you give that a try?
Best of luck!
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The yellowing of the media indicates the cells have an increased metabolic rate. The yellowing only occurs with the DM cocktail; when the DM cocktail is replaced with maintenance media (DMEM + 167nM insulin) on Day 2 the media is still healthy on Day 4,
At the end of the differentiation program (14 days after induction), I only get small patches of differentiated cells; the vast majority of the well contains undifferentiated cells (I run the experiment in a 6-well plate). The cells have been strictly sub-cultured and to my knowledge, are relatively low passage. 
Here is a run down of the protocol I use: preadipocytes are grown to 2 days post-confluence in DMEM supplemented with 10% FBS +1 x P/S (day 0) and the medium changed to DMEM supplemented with 10% FBS, insulin (167 nM), dexamethasone (0.5 μM), isobutylmethylxanthine (IBMX) (0.5 mM) and rosiglitazone (2μM). After 48h, the medium is replaced with medium containing DMEM supplemented with 10% (v/v) FBS and 167 nM insulin. On day 4, after inducing differentiation, and thereafter, the cells are cultured in DMEM with 10% FBS. This maintenance medium is changed every 48 h until the cells are utilized for experimentation.
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Hi James Edward Merrett , I was wondering if you ever found out how to fix your problem with the adipocytes? I am having a similar problem currently. Thanks!
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Recently, we used cardiomyocytes direct differentiated from human induced pluripotent stem cells (hiPSCs) to analyze the effect of hypoxia on cell apoptosis. After hypoxia, we observed decreased contracting rate than normoxia。 But, when analyzed apoptosis by WB (Caspase-3 and PARP) and FC (Annexin V and PI), there is no difference between normoxia and hypoxia?
Thank you for your suggestions.
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Hey You Yo,
I am experiencing similar results. What did you change in the end?
Regards,
Niklas
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I am working with primary murine neural stem cells and iPSC-derived neural stem cells. I would like to separately differentiate them into neurons and astrocytes. I tested some protocols and I can obtain GFAP+ or B-tub+ cells, however the efficiency of differentiation is not as good as I was hoping. I would need a fully differentiated culture, a "monolayer" of neurons or astrocytes for my experiments, and not isolated differentiated cells. Does anyone can advice me on an efficient protocol (or commercial media) for the differentiation of murine NSC? Thanks a lot!
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Creative-Bioarray's kit is not bad, you can try it, good luck!
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Dear all,
Which medium to use after differentiation of SHSY5Y? I used RA+BDNF and I need to use different treatment for next 2 days. Keep them in the differentiation medium or I can use standard medium for SHSY5Y cell excl. FCS, or they need some supplements?
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Tanisha Singh,
Thank you so much for your answer and advice.
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What is the best neuronal differentiation marker for assessing the stages of N2a cells differentiation?
Nuen
Tuj1
MAP-2
........
I need a marker for evaluation of differentiation stages of N2a cell at different time points
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Hello, you can do by retinoic acid or with serum deprivation.
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It is reported that L929 cells can produce GM-CSF as well, but I could not find a protocol about THP-1 differentiation into dendritic cells with conditioned media.
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I could not try. I hope you can find someone else who tried.
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I've been working on the cell for months but now I notice some shape that I didn't see before. In addition, I usually treat the cell with my sample which supposed to decrease the amount of lipid droplets, but now somehow it increase the lipid (I did this previously and it gave me the result I expected, the lipid droplets decreasing, now what happened is the other way around eventhough I use the same sample). And it also take longer for the cell to reach certain confluence eventhough I used similar cell count during subculture. I wonder if someone saw this shape before.
I attached some pictures of the cell. I took it with my phone, the white dot are just light reflection. I circled the questionable shape in red. The 1st and 2nd picture are when cell still pre-adipocyte and the 3rd picture is when the cell already undergo differentiation. This things are not in the medium but more like attached to the cell because it didn't move when I move the plate.
Thank you.
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Hi Monika Nanda,
I also have experienced such round shaped objects during primary culture of mouse BAs. In my case, usually such round drops were disappeared with completion of differentiation. I was also confused as like as you about contamination, but when I asked two professors (those are very experienced with adipose cell culture) they concluded that it's just dead cells and may happens in primary culture. So, according to my experience I think it's okay with ur culture.
In addition, as Matías Gabrielli already mentioned earlier about mycoplasma contamination, I would like to suggest u to check your cells for mycoplasma contamination.
Good luck!!!
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Hi, I am trying to do in-vitro T cell differentiation from mouse naive CD4+CD62L+ T cells but there is something wrong that I cant figure out. I tried several times with different plates and antibodies but cells didn't proliferate at all. I coated the U-bottom nunc 96 well plate with 2ug/ml biolegend antiCD3e antibody (I tried with overnight 4 degree, 37degree or 2 hours 37 degree) and then I resuspended the cells in differentiating media that I prepared for Th1,Th2,Treg,Th17,Th22 with different antibodies. I am using complete media with 55mM b-merkaptoethanol, anti-CD28 concentration is 0.5 to 2 ug/ml. What could be the reason for cells are not proliferating or dying?
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I used to do differentiations during my doctoral work. You can find my protocol below. You would notice that I used to use soluble a-CD3/CD28. You could coat the plates with a-CD3/CD28 or just a-CD3 and then use soluble a-CD28. We have noticed that using 10% serum (instead of 5%) makes a lot of difference. If your differentiation works, you should see good numbers of large cell clusters in your wells.
Lymph nodes and spleens are obtained from mice. The tissues are ground and the cells are then treated with an RBC lysis buffer to remove the red blood cells. The cells are then passed through a cell strainer to obtain a single cell suspension. The naïve CD4+CD62L+ cells obtained from MACS are resuspended in RPMI supplemented with 10% FCS, penicillin / streptomycin, glutamine, HEPES and sodium pyruvate.
Differentiation is done on 24 well plates. 0.5-1 X 106 naïve T cells are plated out per well. The cells are then stimulated with 5µg/ ml anti CD3 and 1µg/ ml anti CD28 in the presence of cytokines. The cytokine concentrations used for are as follows: Th17: TGFβ- 2ng/ml, IL-6- 30 ng/ ml, IL-23- 15 ng/ ml, IL-1β- 10 ng/ml, aIFNg- 1µg/ ml; Th1: IL-2- 2 ng/ ml, IL-12- 10 ng/ml, aIL-4- 1µg/ ml. The cells are cultured for 5 days.
On day 5, the cells are replated in restimulation media (RPMI supplemented with 10%FCS, penicillin/streptomycin, glutamine) and restimulated with ionomycin (750ng/ml) and phorbol- myristateacetate (50ng/ml) for 4 hours in the presence or absence of Brefeldin-A (5 μg/ ml). The cells restimulated in the presence of Brefeldin-A are used for intracellular cytokine staining.
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I am working on THP1-XBlue cells to evaluate the inhibition of the NF-kB pathway by drugs and LPS.
From what I have understood, the exposure to LPS would cause the THP1 cells to differentiate into macrophages and adhere to the walls of the well in a 96-well plate.
Hence, do I need to centrifuge and take the supernatant for the SEAP colorimetric assay? What about the control wells where the cells are not exposed to LPS (in this case the cells remain in suspension)? Also, how would centrifuging before taking the supernatant affect the results of my assay?
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A gentle centrifugation at 300xg (in a standard microfuge 2500-3000 rpm) for 2 min at 4 degree C and collection of cell supernatant carefully will allow measurement of SEAP activity without interference by proteins that may be released due to cell lysis (due to centrifugation at high g value).
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Thank you in advance for your help. My myotubes are plated in 12 well plates coated in Matrigel in 10% FBS DMEM and allowed to reach confluency before being switched out to 1% FBS DMEM (day 1 of differentiation). Media is changed every other day and the myotubes look great around day 5. They cover the entire plate and are straight/long.
Around day 6-7 they begin to start acting weird and I don't know why. The myotubes become branched and fuse together in different directions, and ultimately they die. The way they fuse is almost a mesh-like pattern.
Has anyone else had this problem? I've checked the incubator for correct temp and CO2. It's not contamination, either. Thanks!
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Dear Jj,
you can improve the C2C12 attachment by pre-coating your dish/wells with a suspension of Matrigel diluted 1:80 in DMEM.
Regards