Science topic

Biomonitoring - Science topic

In analytical chemistry, biomonitoring is the measurement of the body burden of toxic chemical compounds, elements, or their metabolites, in biological substances.
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I'm looking to connect with research experts in urinary biomonitoring studies for polycyclic aromatic hydrocarbons
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Yo do not need to derivatize... you may need to clean up your sample.
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What is biomonitoring of microplastics?
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Bio-monitoring microplastics involves evaluating and studying the presence of minuscule plastic particles in living organisms or biological specimens. These particles, usually smaller than 5 millimeters, can arise from diverse origins, such as the disintegration of more oversized plastic items or the direct release of tiny plastic particles.
Bio-monitoring involves gathering and scrutinizing biological samples, like tissues or bodily fluids from organisms, to ascertain the existence and concentration of microplastics. This practice is applicable to various organisms, including fish, shellfish, birds, and mammals. The primary objective is to comprehend the scope of microplastic contamination in ecosystems and evaluate potential impacts on both the environment and human health.
Techniques employed in bio-monitoring of microplastics encompass:
  1. Dissection and Tissue Analysis: Scientists may dissect organisms and scrutinize specific tissues for microplastics, a method frequently used to examine fish and other marine organisms.
  2. Digestive Tract Analysis: Inspecting an organism's digestive tract contents offers insights into ingested microplastics, commonly applied in studies involving seabirds and marine mammals.
  3. Fecal Analysis: Analyzing fecal samples provides information about the presence of microplastics that have traversed an organism's digestive system.
  4. Blood and Serum Analysis: In certain instances, blood and serum samples from animals or humans are analyzed to detect exposure to microplastics.
Bio-monitoring of microplastics is imperative for comprehending the dispersion of these particles in ecosystems, pinpointing potential sources, and evaluating associated ecological and health risks. This process aids scientists and policymakers in making informed decisions related to strategies and regulations for mitigating plastic pollution. Furthermore, it contributes to our understanding of the overall impact of microplastics on biodiversity and the health of ecosystems.
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Stream is undoubtedly essential for the river ecosystem. It is the source of water for the river as well as the groundwater. At the same time, it is essential to study the macroinvertebrates to know their role on the food web. But how it is beneficiary to humans or what is the social impact of this kind of study?
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Chemical parameters show the condition at the moment. In running water, it requires frequent measurements or mixed tests to get an overview of time. Macroinvertebrates respond to long-term conditions, and can, for example, be knocked out by an acute discharge, which is not captured by chemical sampling. In addition, biological indices require relatively little equipment and resources.
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Not pollutants; purely by means of human activities along the river bed and instream activities.
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Diversity of macrobenthic organism s will decrease with increase of human activities except the population of opportunistic species
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Hello everyone,
Just curious to know about the harmonization in scientific community regarding reporting of urinary analyte concentration in human biomonitoring studies.
Some studies report uncorrected concentrations while some report creatinine-corrected or specific gravity corrected concentrations.
1. Is there any common harmonization existing, to what is the better way to represent urinary analyte concentrations ?
2. What are the other ways to report urinary analyte concentrations in analytical research/biomonitoring studies ?
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Please see attached file.
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 Is there a software, which can estimate the number without very difficult and extremely time-consuming work in the lab? We have to analyze ca. 200 samples each of over 1,000 individuals; so that would really help us. Thanks for your suggestions!
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If the sample can be isolated to have only insects ImageJ can be used. Else hand counting is needed.
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Human biomonitoring (HBM) is a tool of health-related environmental monitoring with which populations are examined for their exposure to pollutants from the environment. The results are also intended to provide information as to whether (further) pollutant reduction measures are needed and on the effects of existing measures. HBM plays an essential role in environmental health and the assessment of pollution levels in the population, population groups or individuals. HBM makes it possible to determine levels of contamination in individuals and, where applicable, some of the biological effects triggered by it. It is thus subdivided into human biological monitoring of exposure and biological effect monitoring.
Based on your opinion, what do you think about the importance of using HBM in human health related studies?
Regards,
Ata
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Human biomonitoring allows us to measure our exposure to chemicals by measuring either the substances themselves, their metabolites or markers of subsequent health effects in body fluids or tissues. Information on human exposure can then be linked to data on sources and epidemiological surveys, in order to inform research on the exposure-response relationships in humans.
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I'm studying the relationship between aquatic insects (as biomonitoring medium) and water quality of river. I only have the data for the number of insects/organisms based on their respective orders (ephemeroptera, plecoptera, diptera, odonata). I haven't got the information of what family they are in, so I could not calculate the actual tolerance value for each order of insects.
Is there any alternatives, modified biotic index formula or any other indices that can be calculated using only these information that I have?
Feedbacks are highly appreciated.
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Hi, the question has many aswers depending of what do you want to recieive as an output of calculations - assessment/evaluation of the quality of water environment or the benthic communty itself. To use any method based on species you need to know their (of each!) ecological tolerance/resilience according to the basic ecological principles of Shelford. In case you have not possibility/capacity to use species related indices, you may use EPT-index based on three main insect orders - Ephemeroptera, Plecoptera and Trichoptera. There are also community related indices such as Shannon-Weaver's species diversity index, Pielou's equitabilyty index, Simpsom's domination index, Margalef's diversity index, etc., which all have not so strong requirement to know species' latin binoms, it's enough to recognioze species A from species B and C, etc... and based on these "species list" to calculate indices. This was practicized for years in official state water/river monitoring in my country.
I'm sending a chapter of mine in the university text-book on Biogeography with some more explanatkions on the topic.
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Please guide me.
Thank you
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I agree with Keshav Sinha
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Metabolomics, the study of small molecules in biological systems, is the comprehensive analysis of all metabolites of an organism. It has the potential to improve exposure measures and delineate mechanistic links between exposures and potential health outcome. Moreover, metabolomics has the potential to measure patterns of exposure-specific biologic perturbations. I would be happy to have your opinion on the role of metabolomics in exposure assessment science.
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Naw I am studying metabolic applications in pharmacognosy for identification of new phytocemicals used in as a drug. Thanks for this important topic.
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Kang et al. (2018) have exposed OVA-sensitized mice to formaldehyde (FA) (1.0 mg/m3; 0.8 ppm) or DINP (20 mg/kg bw/d) or a mixture thereof for 18 days to study combined effects on asthma histopathology. I am concerned about their statement about FA causing asthma and their report of effects in the lung tissue; furthermore, I am concerned about the high exposures to FA and DINP and the use of a mice model.
It is now well-established that FA is not associated with asthma or asthma exacerbation since the indoor air quality guideline of FA was developed by WHO (2010). Thus, it is indeed surprising that Kang et al. cite obsolete studies like McGwin et al. (2010) and Rumchev et al. (2002) as support for asthma caused by FA; studies with severe caveats as documented in detail in the literature (Wolkoff and Nielsen, 2010; Golden, 2011; Nielsen et al., 2013; Fromme and Sagunski, 2016), and by the US National Research Council (2011).
Kang et al. also mention studies for support of their statement like Qiao et al. (2009) and Wu et al. (2013). In these studies mice were exposed up to 2.5 ppm FA, which decreases the respiratory rate, and thus the respiratory ventilation about 30% (20% in Kang et al.), e.g. Nielsen et al. (1999). This allows rodents, but not humans, “to significantly reduce their exposure to inhaled sensory irritants” (OECD, 2017). The sensory irritation of FA in the upper airways of mice causes a reflex initiated bradypnea, which inter alia decreases the metabolic rate and carbon dioxide production, and demand for oxygen. Other outcomes are lower body temperature, heart rate, and blood pressure. This may initiate hypoxia-induced stress reactions and inflammation in the airways, which strongly hampers interpretation of the experimental outcome. Thus, I am concerned about the use of a mice model with such a high FA exposure, rather than a rat model, which would be significantly less sensitive to sensory irritants, e.g. Schaper (1993).
The applied internal dosage of DINP appears orders of magnitude higher than typically reported in the literature. For instance, in the German ESBHum study estimated daily median intake concentrations of DINP increased from lowest value in 1988 of 0.20 µg/kg bw/d to the highest median twice as high in 2003 (Wittassek et al., 2007). Kransler et al. (2012) reviewed the literature and estimated human exposure of DINP to be in the order of 1-2 µg/kg/bw/d, while the highest daily intake of DINP in a polyvinyl chloride factory was 26 µg/kg/bw/d (Hines et al., 2012).
The above studies and in particular the study by Sadakane et al. (2002) generate FA from a 5-10% formalin solution. Such generation can produce aerosols with FA, which may bypass the scrubbing effect of the nose and cause inflammation in the lower airways. Thus, experimental findings are dubious without documentation of an aerosol-free FA exposure. Furthermore, authors’ results contrast with a repeated exposure study in mice exposed to ≥ 0.6 ppm aerosol-free gaseous FA, which did not show an increase of inflammatory markers in BAL fluid (Wolkoff et al., 2012); see also Larsen et al. (2013). Thus, the statement by Kang et al. about asthma and FA is indeed surprising, also in view of the well-established fact that gaseous FA is considered to deposit in the nasal cavity nearly quantitatively and does not reach internal organs (World Health Organization, 2010), as demonstrated in many recent studies by exposure of 13C2H-labeled FA to rats and non-human primates, e.g. Edrissi et al. (2013); Yu et al. (2015). Further, no significant lung effects have been observed in human exposure studies up to 3 ppm for 3 hours in asthmatics (Sauder et al., 1987). Thus, I am deeply concerned about the statement by Kang et al. (2018) that FA should cause asthma. Thus, I wonder profoundly how Kang et al. can explain this obvious discrepancy. Unambiguous evidence for an association between specific phthalates and asthma is lacking; many authors are very cautious about their conclusions, e.g. Bertelsen et al. (2013); Bekö et al. (2015) and several reviews have not identified an association, e.g. (Nielsen et al., 2007; Jaakkola and Knight, 2008; Nurmatov et al., 2015; Tagiyeva et al., 2016).
In summary, there is neither experimental, epidemiological nor physiological support for an association between gaseous FA exposure and asthma. Those experimental studies that advocate for an association appear to be hampered by exposure to aerosolized FA, while epidemiological studies are inconclusive due to multi-exposures (World Health Organization, 2010). Unequivocal support for an association between specific phthalates or their metabolites has not yet appeared. Thus, I am profoundly concerned about the statements by Kang et al. In view, of using a mice model, rather than a rat model, and the high exposures of both FA and DINP, we strongly recommend to interpret cautiously the outcome of the observed combined effect, not to be used for human risk assessment.
-Bekö G, Callesen M, Weschler CJ, Toftum J, Langer S, Sigsgaard T, Høst A, Jensen TK, Clausen G. Phthalate exposure through different pathways and allergic sensitization in preschool children with asthma, allergic rhinoconjunctivitis and atopic dermatitis. Environ Res 2015; 137: 432-439.
-Bertelsen RJ, Carlsen KCL, Calafat AM, Hoppin JA, Håland G, Mowinckel P, Carlsen K-H, Løvik M. Uninary biomarkers for phthalates associated with asthma in Norweigan children. Environ Health Perspect 2013; 121: 251-256.
-Edrissi B, Taghizadeh K, Moeller BC, Kracko D, Doyle-Eisele M, Swenberg JA, Dedon PC. Dosimetry of N6-formyl lysine adducts following [13C2H2]-formaldehyde exposure in rats. Chem Res Toxicol 2013; 26: 1421-1423.
-Fromme H, Sagunski H. Zur Frage eines Asthma auslösenden bzw. verschlechternden Potenzials von Formaldehyd in der Innenraumluft bei Kindern. Bundesgesundhbl 2016; 59: 1028-1039.
-Golden R. Identifying an indoor air exposure limit for formaldehyde considering both irritation and cancer hazards. Crit Rev Toxicol 2011; 41: 672-721.
-Hines CJ, Hopf NB, Deddens JA, Silva MJ, Calafat AM. Occupational exposure to diisononyl phthlate (DiNP) in polyvinyl chloride processing operations. Int Arch Occup Environ Health 2012; 85: 317-325.
-Jaakkola JJK, Knight TL. The role of exposure to phthalates from polyvinyl chloride products in the development of asthma and allergies: A systematic review and meta-analysis. Environ Health Perspect 2008; 116: 845-853.
-Kang J, Duan J, Song J, Luo C, Liu H, Li B, Yang X, Yu W. Exposure to a combination of formaldehyde and DINP aggravated asthma-like pathology through oxidative stress and NF-kB activation. Toxicology 2018; 404-405: 49-58.
-Kransler KM, Backman AN, McKee RH. A comprehensive review of intake estimates of di-isononyl phthalate (DINP) based on indirect exposure models and urinary biomonitoring data. Regul Toxicol Pharmacol 2012; 62: 248-256.
-Larsen ST, Wolkoff P, Hammer M, Kofoed-Sørensen V, Clausen PA, Nielsen GD. Acute airway effects of airborne formaldehyde in sensitized and non-sensitized mice housed in dry or humid environment. Toxicol Appl Pharmacol 2013; 268: 294-299.
-McGwin JrG, Lienert J, Kennedy JrJI. Formaldehyde exposure and asthma in children: A systematic review. Environ Health Perspect 2010; 118: 313-317.
-National Research Council. Review of the Environmental Protection Agency's draft IRIS assessment of formaldehyde. P. 1-194. 2011. National Academies Press.
-Nielsen GD, Hougaard KS, Larsen ST, Wolkoff P, Clausen PA, Wilkins CK, Alarie Y. Acute airway effects of formaldehyde and ozone in BALB/c mice. Hum Exp Toxicol 1999; 18: 400-409.
-Nielsen GD, Larsen ST, Olsen O, Løvik M, Poulsen LK, Glue C, Wolkoff P. Do indoor chemicals promote development of airway allergy? Indoor Air 2007; 17: 236-255.
-Nielsen GD, Larsen ST, Wolkoff P. Recent trend in risk assessment of formaldehyde exposures from indoor air. Arch Toxicol 2013; 87: 73-98.
-Nurmatov UB, Tagiyeva N, Semple S, Devereux G, Sheikh A. Volatile organic compounds and risk of asthma and allergy: a systematic review. Eur Respir J 2015; 24: 92-101.
-OECD. OECD Draft Guidance Document 39. Acute Inhalation toxicity Testing. Version 2. Nov. 2017. Draft Guidance and Review Documents/Monographs - OECD.
-Qiao Y, Li B, Yang G, Yao H, Yang J, Liu D, Yan Y, Sigsgaard T, Yang X. Irritant and adjuvant effects of gaseous formaldehyde on the ovalbumin-induced hyperresponsiveness and inflammation in a rat model. Inhal Toxicol 2009; 21: 1200-1207.
-Rumchev K, Spickett J, Bulsara M, Philips MR, Stick SM. Domestic exposure of formaldehyde significantly increases the risk of asthma in young children. Eur Respir J 2002; 20: 403-406.
-Sadakane K, Takano H, Ichinose T, Yanagisawa.R., Shibamoto T. Formaldehyde enhances mite allergen-induced eosinophilic inflammation in the murine airway. J Environ Pathol Toxicol Oncol 2002; 21: 267-276.
-Sauder LR, Green DJ, Chatman MD, Kulle TJ. Acute pulmonary response of asthmatics to 3.0 ppm formaldehyde. Toxicol Ind Health 1987; 3: 569-578.
-Schaper M. Development of a database for sensory irritants and its use in establishing occupational exposure limits. Am Ind Hyg Assoc J 1993; 54: 488-544.
-Tagiyeva N, Teo E, Fielding S, Devereux G, Semple S, Douglas G. Occupational exposure to asthmagens and adult onset wheeze and lung function in people who did have childhood wheeze: A 50-year cohort study. Environ Int 2016; 94: 60-68.
-Wittassek M, Wiesmüller GA, Koch HM, Eckard R, Dobler L, Müller J, Angerer J, Schlüter C. Internal phthalate exposure over the last two decades - A retrospective human biomonitoring study. Int J Hyg Environ Health 2007; 210: 319-333.
-Wolkoff P, Clausen PA, Larsen ST, Hammer M, Nielsen GD. Airway effects of repeated exposures to ozone-initiated limonene oxidation products as model of indoor air mixtures. Toxicol Lett 2012; 209: 166-172.
-Wolkoff P, Nielsen GD. Non-cancer effects of formaldehyde and relevance for setting an indoor air guideline. Environ Int 2010; 36: 788-799.
-World Health Organization. Selected pollutants. WHO indoor air quality guidelines. WHO Regional Office for Europe, Copenhagen, 2010, 1-454 pp.
-Wu Y, You H, Ma P, Li L, Yuan Y, Li J, Ye X, Liu X, Yao H, Chen R, Lai K, Yang X. Role of transient receptor potential ion channels and evoked levels of neuropeptides in a formaldehyde-induced model of asthma in Balb/c mice. PLos ONE 2013; 8: e62827.
-Yu R, Lai Y, Hartwell HJ, Moeller BC, Doyle-Eisele M, Kracko D, Bodnar WM, Starr TB, Swenberg JA. Formation, accummulation and hydrolysis of endogeneous and exogeneous formaldehyde induced DNA damage. Toxicol Sci 2015; 146: 170-182.
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Thanks, Xaver, for this extensive compilation about industrial exposure - opposite to my focus about indoor air exposure.
I notice: - 1) that your cited papers on average are about 33 years old, some as uncontrollable case stories with extreme exposure; 2) many of the occupational reports are about mixed exposure of formaldehyde and dust (resin) particles. In view of your cited papers and their quality, I continue to state that indoor (non-industrial) airborne formaldehyde exposure is unlikely to be associated with asthma, as supported by the well-established airway toxicology of this chemical.
I recommend to read the recent SCOEL documentation about formaldehyde.
Kind regards,
Peder
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Hi!
Does anyone know about aquatic community/species indicator of manganese enrichment?
I am looking for bioindicator for this element within water system such as rivers.
Thank you all for your help!
Cheers,
Joanna
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Please also take a look at this useful RG link.
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I'm compiling some examples of good bad aquatic biomonitoring studies for a commentary on monitoring practices. I have a couple published bad examples , but am on the lookout for more good, bad examples.
For example, in a study of power plant effluents discharged near the transition of a flowing river to a standing water reservoir, the reference sites were located in the flowing river and the assessment sites were located in the reservoir. The investigators concluded that benthic communities are different in rivers and reservoirs.
In another reference example, the investigators dispensed with reference sites all together because they were only interested in whether there were changes year to year in assessment sites, not in whether the reference conditions were different.
Another bonehead design is to use chemical detection limits that were higher than the water quality criteria that are being assessed.
I'm after citable works that can be specially discussed in open.  Appreciate any leads, which may of course be sent privately.
Confoundedly yours,
Chris
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Dr. Namayandeh, a paper from the 1990s called "Beyond BACI: the detection of environmental impacts on populations in the real, but variable, world" by Underwood started quite a conversation in the literature. Good place to start.
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Biomonitoring – human and environmental perspectives
22 January 2019 09:00-17:00, London, United Kingdom
We are accepting posters - deadline 20 December.
Regards
Kate, RSC Toxicology group Chair
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Very interesting!
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Can I help you with anything?
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Here are a few papers that deal with assessment of lakes and rivers in Europe. In short, primary producers (phytoplankton and benthic algae) are good indicators of elevated nutrients, benthic invertebrates (general degradation, e.g. land use and associated stressors like nutrients, fine sediments, loss of riparian habitat), macrophytes (nutrients, water level fluctuations) and fish (connectivity).
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Hello all.
I would like to get some suggestions regarding how water quality can be related with Water for Sustainable Development particularly in bio monitoring studies. Can anybody provide me some valuable insights.
Thanks in Advance.
sincerely
Anila P Ajayan
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Dear Anila
Unfortunately, Sustainable development have a great dimension of anthropogenic vision. We need to assess aquatic ecosystems to conserve them in their most original form. If we protect aquatic life, we will have a healthy aquatic ecosystem, only then, the resource will be available for this and the following generations.
Best regards.
Perhaps the following papers may be helpful:
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What are the main challenges facing biomonitoring programs today, financial and political inadequacies aside? If you are in charge of producing an effective monitoring program what would you like to see improved?
In pursuit of answer for this question I thought to include few others to clarify my objectives.
In the age of data and with inflow of data from everywhere, how monitoring programs can sort out the right data? Given there are numerous organizations worldwide that generate similar information, whether is barcoding information (i.e. taxonomy), environmental and or biological data (i.e. physico-chemical and species distribution) what tool(s) is/are required to manage the information?
How efficiently monitoring programs can train their staff in taxonomy, sampling and gathering data? what are the specific needs in order to do so?
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I think it rather depends on where and why the monitoring program is being established. Is it on land or in water? Is it about monitoring species richness, species at risk, invasive alien species, or all of the above? There have been some successful advances in using crowd-sourcing for biomonitoring - just think oif all the birdwatchers out there. I have also heard of rpograms using school children to watch for rare species using their cell-phones to take pictures and GPS locations for expert reference.
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i am working on the water quality of a stream using biomonitoring, i think algal pollution index can be helpful for the evaluation of anthopogenic pressure in my study area.
thanks
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Please have a look at these PDFs...
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I need it to assessment the sediment of heavy metal .
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I'm looking for pressure-specific indices for fine grained sediment. In the UK we have PSI and CoFSI. Are there any similar indices in mainland Europe?
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Historically, the evaluation of contaminant effects has emphasized surface waters rather than sediments (Ingersoll, 1995).  For example, Standard Methods for the Examination of Water and Wastewater (APHA, 1976) include a coverage of the general terminology and procedures for performing bioassays and tentative procedures for undertaking amphipod bioassays appeared for the first time in the 14th edition and even then only freshwater species (gammardian amphipods) were recommended.  Similarly, polychaete annelids including Neanthes arenaceodentata, N. succinea, N. virens, Capitella capitata and Ophryotrocha sp. were recommended to characterize water toxicity (APHA, 1976).  Sediment toxicity tests began in late 1970s (Burton, 1991), but the science of sediment toxicity is still very young (Burton and Scott, 1992; Ingersoll, 1995) and there were no standard methods for conducting sediment toxicity tests until the 1990s (Burton and Scott, 1992).  Even so, no completely standardized methodology has been published (Luoma and Ho, 1993), despite their advantages for providing information on the ecological impact of contaminated sediment (Chapman and Long, 1983; Chapman, 1989).
Amphipods have proved especially useful and are commonly employed in sediment toxicity tests (Luoma and Ho, 1993), because of their high sensitivity (e.g. Swarzt et al., 1982, 1985) and because their population densities decline along pollution gradients in the field (e.g. Bellan-Santini, 1980).  One of the first bioassays for testing the toxicity of dredged material confirmed the high sensitivity of the infaunal amphipod Paraphoxus epistomus compared to other infaunal species Protothaca staminea, Macoma inquinata, Glycinde picta and Cumacea (Swarzt et al., 1979).
Polychaetes are also a common taxon employed in sediment toxicity tests (Luoma and Ho, 1993; Ingersoll, 1995).  Species used todate include, Cirriformia spirabrancha (Milanovich et al., 1976), Neanthes arenaceodentata (Pesch and Morgan, 1978; Pesch, 1979; Pesch and Hoffman, 1983; Dillon et al., 1993), Glycinde picta (Swartz et al., 1979), Crenodrilus serratus (Reish, 1980), Arenicola cristata (Schoor and Newman, 1976; Rubinstein, 1979; Rubinstein et al., 1980; Walsh et al., 1986), Nereis virens, Glycera dibranchiata and Nephtys caeca (Olla et al., 1988), Dynophilus gyrociliatus (Åkesson, 1980; Long et al., 1990), Ophryotrocha labronica, O. diadema (Åkesson, 1980) and Streblospio benedicti (Cheng et al., 1993).
See attachment paper and see most common toxicological studies
Best
Prfo. Dr. Levent Bat
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I wish to work on different mosses and lichens as biomonitors in air pollution studies. How can I identify them (names, species, the age etc)?
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Bryophyte (moss) genome obviously is the most reliable. But you can identify mosses using a key that details things such as:
Is the gametophyte colony dark green or greyish-white in appearance?
Is the mature spore capsule upright or nodding?
When dry, do the leaves twist around the stem or simply fold inwards to the stem?
Does the leaf have a nerve or not ?
Are the cells in the lower leaf corners markedly different from the other leaf cells?
How large are the spores?
Lichens are not really plants – they are a combination of fungi and algae and are classified based on the fungus and fungal features. In order to identify lichen to species level, lichenologists use common household chemicals and some not-so-common chemicals to test the color reaction of the unique compounds found in the structure of the lichen, as well as using a lichen key to distinguish between species.
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I'm (as HEAD of BIOMONITORING laboratory) looking for interested scientists to assist us in the preparation of articles and in future on collaboration work. We need qualified help in English and possible statistical analysis. Interests ornithology (population dynamics, spatial heterogeneity, climate change), ichthyology (fish populations(assemblages) and environmental parameters). Only without money relations help is welcome. The opportunity to be a co-author of articles only is welcomed. Post-docs, young PhD, PhD student from Europe and North America is welcomed.
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For ornithology I can help I am working on other topics as well, but I have done ornithology in the past and supervising a student at this time as well.
if you still need help contact me at floris.breman@wur.nl
good luck
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I performed some experiments on wet deposition on plants but that is quite an easy task compared to designing an experiment with the dry deposition. I cannot seem to find any studies dealing with the problem to draw the inspiration from. Can you suggest some if there are? I would like to keep the concentration of the pollutant in the container stable for some time and then analyse the plant, that is all.
Thanks in advance
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I've tried to simulate dry deposition in the lab as well, but I couldn't. In my case I was working with polycyclic aromatic hydrocarbons in lichens. I was able to make PAHs to adhere to small particles, but not in a uniform way and not in enough quantity to perform the experiments, so it was useless...  I ended up making an outdoor experiment instead. 
Hope you'll have some good ideas from other people. 
Good luck!
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Hello! We are doing our thesis which is to measure muscle activity with lbp cyclers and compare the activity with no pain cyclers. It's a bit challenging for us since we are going to measure the activity while the cycler is riding in trails (Mountain biking). Does anyone have any suggetions / ideas how we could reduce the loss and the interference which are caused while cycling? Is it best that the cycler would use no shirt or which kind of results would we get if the electroids are place  under shirt? We are using Biomonitor ME6000 to measure and we are using Ambu Blue sensors ( size m)
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I suggest you use 2 amplifiers one for upper trunk and secound for lower extrimity then sink this 2 data. Thoght technology devices may be good. 
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hi. im working on abundance of macroinvertebrates in seagrass community. i am using a 2D MDS to see their resemblances, which are at 60 and 80 percent. however, there are points that deviate from the groups. how should i interpret this? thanks! :D
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Hi,
as you my know the MDS is a graphical representation of the similarity matrix, closer points means that these are more similar than some that are further apart. If I get your description right the points that clearly deviate from major clusters are below the threshold of 60% similarity.
There are various ways to see how variation is distributed in your data such as Principal Component Analysis (PCA), ANOSIM, Principal component Analysis (PCO) which may help you to interpret the reasons for the underlying grouping.
Cheers
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I am looking for any reliable information about the feeding ecology of Einfeldia longipes (syn. Chironomus bequaerti)! I would appreciate very much any feeding details of this benthic larvae!
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 Dear Timur,
I have checked Moog (2002). Even though E. longipes is mentioned in the catalogue, no food preferences are set for it. However, other species of the genus, such as E. pagana and E. dissidens are referred to as detritus feeders (80%) and active filtrators (20%). Sporka et al. (2003) considers E. dissidens to be a collector or active filtrator as well. Most likely this can apply for E. longipes, too. If you need the references, let me know. 
All the best,
Laci
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The model is provided in the attached papers.
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Got it!-age distribution would be great enough to adequately allow the bioaccumulation model to be evaluated; will contact the authors, many thanks for your advice, cheers, Ross
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Does anyone can be write me about role of plants ( Phragmites Australis, and other emergent plants, in pollution removal in subsurface wetlands? How much percent can be role in reduction of heavy metals, N, P, other macro and micro nutrients? How much percent, minimum, mean and maximum, or range of efficiency.
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Dear Bill Paton
I will be delighted to have the percentage of pollution removal that related to the Plant role?
Thanks
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Hello
greetings!!
Numbers of studies have been documented the bio-monitoring of PAH by Mussel (e.g., Mytilus sp., Perna sp. or Mytilopsis sp.,). Are there already some studies that documented the bio-monitoring potentials of aquatic macrophyte (e.g., algae, saltmarsh) for PAH ? Thanks for your time. 
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Dear colleague,
 My scientific work concerns a related topic, biomonitoring and biomarkers, a previous step for bioremediation strategies. I have recently worked with Egeria densa (a freshwater plant) and I observed several damages at molecular and physiological level when exposed to anthropogenic pollution (followed as physical-chemical changes of water). Those changes, for example, are linearly related with conductivity and total solid dissolved as indicators of multiple ionic nature; thus they can be used for bio-monitoring, with a good response. So, you may test it with specific pollutants.
Please, let me know your interest.
Regards, Frenkel
Several downloadable articles can be obtained using phytoremediation treatement macrophytes at Google Scholar. I can send you selected one from my EndNote library if you like it.
If you need specific questions you may contact me. For a direct and fast view I attach a single one, a review in spanish, which could be help you for finding something related in english litterature and giving and approach to essayed species and uses.
Give me feedback of progress, please.
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Hi there,
I am just wondering whether correction for multiple testing is necessary with the indicator value IndVal by Dufrene & Legendre (1997), as well as the modified version by De Caceres et al. (2010). This correction is sometime proposed (e.g. by Legendre 2009), but not implemented in the R code of packages 'labdsv' and 'indicspecies' where the issue is at least mentioned.
As I understood, one major advantage of the IndVal over TwinSpan analysis was that is was not affected by (in this case the abundances of) other species.
This advantage of unaffectedness would be lost if correction for multiple testing would be conduncted for the IndVal, since the total number of species (hence number of tests) would then affect the possibility for a single species to gain significance with respect to its indicator value.
Any suggestions?
Thanks!
Armin
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Hi Armin,
I am not sure but just guessing here: as the IndVal tests each species separately for the significance of its indicator value, i.e. each species is a separate test where the response changes, shouldn´t the tests then be considered independent and thus no correction would be required?
again, I am just blowing up some thoughts...
greetz
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I am interested in evaluating the potential dispersal of mayflies nymphs in streams to quantify dispersal as a structuring mechanism of metacommunities. I have tried some available dyes (such as rose bengal), but they are not being efficient.
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Did rose bengal kill the mayflies? Or was it simply not taken up by them?
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Does anyone has experience using MP AES to analyse heavy metal? 
Do you know the detection limit to analyze Pb, As, Cd in human samples (urine, blood)?
Is that true the cost of operation is very low compare to FAAS or GFAAS
Thank you for your time.
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I have seen one of these instruments and I also spoke to the user. He told me that detection limits are comparable to ICP-OES and indeed the cost of operation is relatively low comparing to other plasma techniques as it does not require the expensive plasma gas but I do not know how about FAAS or GFAAS, but I do not think it is much cheaper than these two techniques. The cost of acetylene is not very high and you do not use a lot of argon in GFAAS technique. I think that the main advantage of MP-OES comparing to FAAS or GFAAS is the speed of analysis. You can determine many elements in one run.
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We want to mark boatmen (Corixidae) to study how individuals move within a pond. We have evidence that they move very little. We tried permanent markers but they can rub anywhere on their body with their legs, and they quickly rub off the mark. Does anyone have any suggestions about a suitable method?
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Hi
We used, for crayfish, underwater markers such as the ones made by Dykem. However this may not solve your problem if the animal can rub the off the mark very quickly. If you try this solution, be aware that some of the marker models have hard tips making very difficult the direct use of the marker on the insect. If you need a reference for this method you can check:
Ramalho, R. O., McClain, W. R., & Anastácio, P. M. (2010). An effective and simple method of temporarily marking crayfish. Freshwater Crayfish, 17(1), 57-60.
good luck
Pedro
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I am searching for an organism that is also easy to breed in the aquarium and reproduces relatively quickly (say up to 2 or 3 months is ok). I am open to both salt- and freshwater organisms!
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I agree with Ana and Kantha. I would also suggest larval stages (pelagic stages) of species such as lobsters, carbs and bivalves which are really sensitive to acidification (decalcification etc..) Cheers,
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The article starts by saying that the biomonitoring lags behind the science, and ends by saying that the science is lagging behind the policy. Given that the policy / legislation (i.e. WFD) more or less dictates the biomonitoring, where does that leave us?
The implications of the opening section is that a wide range of methods are available to regulatory agencies, but are underused. Although the article is a good critique of existing methods, it doesn't really explain what aspects of science should be incorporated into existing monitoring straight away. The authors admit that most new methods don't necessarily relate to existing known pressures and/or require further development. What new methods are cost-effective, better than existing tools, and could be deployed in a 3-5 year timetable after an initial piloting and testing phase?
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We are currently working on an EU funded project to explore how new technologies can be used to monitor the natural environment (see www.capacitie.eu). There are some really exciting technologies that are at different stages of development which could help us to monitor the environment in a much more intelligent. A key component of our project will be to determine the opportunities and barriers for adopting these different technologies so I am hopeful that in 2-3 years time we will have some answers to your question.
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I'm looking for articles with the top result of kindly Bivalve for bioindicators, biomarkers in pollution biomonitoring from your country. Any suggestions, please?
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many scientist using Mussel to indicated pollution of heavy mental in surface water. e.g. Prof. Wenxiong Wang, in Hong Kong,  You may find more paper in his personal website http://ihome.ust.hk/~wwang/
in addition, attach pleased find a Manual of  "A Training Manual for Assessing Pollution (trace/heavy metals) in Rivers, Estuaries and Coastal waters-Using Innovative “Artificial Mussel (AM) Technology” - Bangladesh Model."    
Hope its useful.
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Kidney and gut in bivalves, Mytilus galloprovincialis?
Could you help me please to find some pepers talking about these organs in toxicity assays? or could someone explain why those organs doesn't used in these kind of investigations? because i guess that they are important (excretion and absorption), any explanation please? i'm looking forward a reply and i'll be very grateful!
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Thanks, Ali
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I am interest if anyone has attempted to quantify, or has any evidence that fish can become accustomed to nets and 'learn' to avoid capture when sampling is undertaken at high temporal resolution (e.g. weekly).  My interest is related to field-based monitoring programs in 'closed' (e.g. river pools, wetlands) or small freshwater systems involving regular, intense sampling programs (e.g. weekly/fortnightly).
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Thanks Everyone - Enjoy the new year festivities
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I wish to know the various methods involving in the enumeration of benthic organisms in aquatic water bodies;
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Hi!
Here is good book about sampling  and other methods using in stream ecology.
Best wishes,
Tatiana 
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I'm reviewing information on the issue of low-cost methods in ecotoxicology, and I have some studies on it, such us Mills CL et al. 2006 Development of a new low cost high sensitivity system for behavioural ecotoxicity testing Aquatic Toxicology 77: 197-201 I would like to know other studies on it.
many thanks
Álvaro
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Many thanks for all the useful information. When I ask about low-cost ecotoxicological methods I'm looking for methods that use cheap or even free software, videorecording, automatic monitoring, etc.  which is not incompatible with the analysis of actual concentrations in the bioassays (that it is usually not very expensive if they are conducted in external laboratories). A low-cost method can use a free software imagen analysis instead of a commercial one with the same (or even better) results, which means a big savings for a research project. The same can be said for video recording methods, etc. These aspects are very important in project with low budgets.
Again many thanks for your help and time
Álvaro
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there are several advancements in the analysis and monitoring of freshwater bodies in all over world; but i need to know the current advancements in the same. like modelling, analysis, prediction, statistical applications etc., can anyone help in this regard
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Hi.
Some other current tools for assessing pollution status of aquatic ecosystems includes the use of cell lines (in situ biomonitoring), use of biometric ratios and sediment toxicity screening guidelines by US NOAA.
Trends are also moving towards the use of fish early life stages/embryos for monitoring sediment toxicity. 
An example of a published paper in this regards is:
Matteo Minghetti, Sabine Schnell, Michael A. Chadwick,Christer Hogstrand and Nic R. Bury (2014). A primary FIsh Gill Cell System (FIGCS) for environmental monitoring of river waters. Aquatic Toxicology 154:184–192
Hope this helps. Regards.
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Could polypores be applied in monitoring the environmental pollution? Has anyone experience with that? Or know about key references, reviews or any active research group dealing with biomonitoring using polypores?
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A bioindicator is an organism or biological response that reveals the presence of the pollutants by the occurrence of typical symptoms or measurable responses, and is therefore more qualitative. These organisms (or communities of organisms) deliver information on alterations in the environment or the quantity of environmental pollutants by changing in one of the following ways: physiologically, chemically or behaviourally. The information can be deduced through the study of:
1. their content of certain elements or compounds
2. their morphological or cellular structure
3. metabolic-biochemical processes
4. behaviour, or
5. population structure(s).
The importance and relevance of biomonitors, rather than man-made equipment, is justified by the statement: "There is no better indicator of the status of a species or a system than a species or system itself. Sourece: http://en.wikipedia.org/wiki/Bioindicator
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We are planning to make a basic quantitative plankton study of local surface water.
1. How to collect samples from lotic and lentic water? What should be the mesh size of plankton nets?
2. Do we need to use fixatives? If yes, which is the best one?
3. How to prepare slides for taking photograph? Do we need to any stain? If yes, which is the best one?
4. Can anyone help us with the identification of the microorganisms?
5. How to correlate the presence/ abundance of the microorganisms with water quality?
It will be really helpful for us if you can provide us with the required information. Thank you in anticipation.
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Maybe you can look for:
Robert G. Wetzel and Gene E. Likens: Limnological Analyses, 3rd Edition, Springer: New York, 2000.
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It is reported that mercury levels have been increasing in fish. I was curious if anyone knew where I could find data showing mercury levels in various types of dietary fish and seafood, particularly tuna, over various years.
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"Seafood data" is a Norwegian database where you can search for the presence of undesirable components and nutrient data in seafood. There are no data on tuna, but you can find values over years for other species. Take a look at: http://www.nifes.no/sjomatdata/index.php?page_id=&lang_id=2
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In my current work I have found a decrease of some trace elements (with the exception of Al) in E. prunastri during the spring season, it is possible that within three months of exposure there has been a similar condition?
Give me your opinions.
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Dear Andrea,
The bioconcentration of trace elements may be influenced by the amount of environmental bioavailable elements, their uptake and loss kinetics, their essential character or not, the speciation between the organism compartments and the biological cycle of your organism. All these aspects are combined and their proportionnal influence varies along the year. These are just general aspects you surely already know.
Yes, of course, a rapid increase of biomass can dilute the concentration of TEs in your lichen. This is mainly true for trace elements with low uptake kinetics, that are more slowly accumulated and are subject to a diclution effect due to the organism growth. A good way to check you hypothesis is to expess if possible the amount of trace elements in your lichen as contents (in µg) instead of concentrations (µg g-1). If the total content of 1 trace element increased, that mean that it was effectively bioaccumulated in your organism, but slower than its growth rate or mass increase.
I do not work on lichen, but I have published some papers dealing with that question in marine seagrasses and mussels. I hav also observed dilution effect and seasonnality in these organisms. Below are references of my papers. I hope you will find some informations that may interest, but I am sure there also exist data on terrestrial organisms.
- The effect of size, weight, body compartment, sex and reproductive status on the bioaccumulation of 19 trace elements in rope-grown Mytilus galloprovincialis. J. Richir, S. Gobert. Ecological Indicators (2014), F.I.: 2,890 (2012), F. Müller, Elsevier, 36, 33–47.
- Experimental in situ exposure of the seagrass Posidonia oceanica to 15 trace elements. J. Richir, N. Luy, G. Lepoint, E. Rozet, A. Alvera Azcarate, S. Gobert. Aquatic Toxicology (2013), F.I.: 3.761 (2011), M. J. Nikinmaa, R. S. Tjeerdema, Elsevier. 140–141, 157– 173
- Chemical contamination along the Mediterranean French coast using Posidonia oceanica (L.) Delile above-ground tissues: a multiple trace element study. N. Luy, S. Gobert, S. Sartoretto, R. Biondo, J.M. Bouquegneau, J. Richir. Ecological Indicators (2012), F.I.: 2,967 (2010), F. Müller, Elsevier, 18, 269-277
- Coastal pollution of the Mediterranean and extension of its biomonitoring to trace elements of emerging concern. PhD thesis. Promotors: Jean-Marie Bouquegneau and Sylvie Gobert. 2012, University of Liège (Belgium).
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I'm studying marine and freshwater ecosystems in Khuzestan province, Iran.
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I am not sure what type of organisms are you looking for, but nevertheless you can check the official indices that are being used for the implementation of Water Framework Directive at the page of the WISER Project, "Water Bodies in Europe - integrative systems to assess ecological status and recovery” (http://www.wiser.eu/results/method-database/), and the paper from Hydrobiologia 2010;652: 149-63 can give some information about recent and wide accepted indices. In addition, you can make a good search in specialized SCI journals such as Ecological Indicators, Science of The Total Environment.
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The Weekly News Alert on Science for Environmental Policy of the European Commission refers to an article in the Journal 'Environmental Pollution' which suggests that trees can be used as biomonitoring tools in urban environments.
What is your opinion on using plants or trees to map environmental pollution in urban environments.
Is it a worthy alternative for the physico-chemical techniques used until now?
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Dear Frank/Paolo,
Indeed a very interesting topic! ;) As far as I see it, the applicability of a certain biomonitoring approach depends on the research question and the kind of application.
As uptil now a lot of different biomonitoring approaches exist based on the evaluation of anatomical, morphological or physiological characteristics but also the analysis of trace element accumulation in lichens, mosses grasses, higher plants, trees,... A lot of these approaches reflect the pollutant effect and, therefore, generate additional information compared to the physico-chemical methods. Nevertheless, the observed pollutant effect is inseperably determined by the resilience of the considered organism and might be due to antagonistic or synergetic effects of other pollutants (all factors complicating the interpretation of these biomonitoring approaches). Within my PhD, I'm using another biomonitoring technique, namely biomagnetic monitoring. As a part of the particulate matter load consists of magnetizable ferromagnetic particles, this fraction can be quantified as a proxy for the total particle amount. Although this technique is species specific, it uses the surface accumulation of particles and is, therefore, not dependent on organism resilience or physiological effects. This approach is succesfully applied to determine urban spatial particle distributions at a much higher resolution (and a much lower price) than the current monitoring networks. Nevertheless, comparison with physico-chemical methods and for example model results seems indeed necessary to make an integrated interpretation of the results.
Therefore, I think that good consideration of the applied biomonitoring approach is indispensible, taking into account the corresponding restrictions. On the other hand, physico-chemical methods also depend on the applied procedure (e.g. particulate matter sampling methods) and the health relevancy of the applied method (e.g. particle weight vs. particle numbers). So, to my opinion, the truth lies indeed in the comparison of multiple approaches and a good recognition of the limitations of the applied procedures.
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With respect to sediments collected from automobile repair stations.
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I think this question is not easy to answer because it very much depends on the legislation. Here in Germany values differ depending on the "pathway of action" of the contaminant, for example soil -> human, soil -> groundwater or soil -> plant. For total petroleum hydrocarbons (TPH) values range from 300 mg/kg to 1000 mg/kg. For soil -> groundwater they depend on protection zones, ranging from 200 mg/kg soil in highly protected areas to 1200 mg/kg for the vadoze zone and deep groundwater levels (>5 m). Another issue is the use of excavated contaminated soil, where unlimited use is permitted for <100 mg/kg, ranging to <2000 mg/kg for technical usage including extended environmental monitoring.
Regards
Sources:
Länder-Arbeitsgemeinschaft Abfall (LAGA), Mineralischen Reststoffe/Abfälle, Anforderungen an die stoffliche Verwertung (M20), Teil II Stand: 05.11.2004
Bewertungskriterien für die Beurteilung von Grundwasserverunreinigungen in Berlin (Berliner Liste 2005), Bek. v. 01. 07. 2005 – Stadt IX C –
(TPH is MKW in german)
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For i.e. EPT index, ASPT, BMWP, etc.
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Hi Rosanna,
Sure thing will email the information to you tomorrow. I assume you are aware of the BMWP scoring system primarily used for detecting organic pollution events. One current shortfall in this method is that it fails to utilise abundances, although this soon will be superseded by the WHPT index which will have pressure sensitivity scores for each scoring family linked to abundance categories.
Kind regards,
Drew.
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I have calculated MPI and BAF for the same fish for Cu, Ni, Fe, Co, Mn and Zn. The result obtained by MPI follows the trend liver>kidney>gills>integument>muscle. While from the BAF was liver>gills>kidney>muscle>integument. According to me, both give metal load. MPI gives total metal concentrations and BAF gives them with respect to water. How can I justify this?
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I think BAF is useless to determine metal contamination in fish, except for Hg.
Please find the article below for reference, you will understand the reasons.
McGeer et al, 2003. Inverse relationship between bioconcentration factor and exposure concentration for metals: implications for hazard assessment of metals in the aquatic environment. Environ Toxicol Chem. 22(5):1017-37. Good luck
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I am working on the accumulation of seven metals in a single species collected from a single site. I want to use both BCF and MPI, can anyone tell me if it is ok to do so? Also, can anyone tell me what I could deduce from the BCF? I know that from MPI, I can get information about the total metal load in individual organs, but I don't know about the BCF.
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I am working on toxicity of Fe, Zn, Cu, and Cr from three different sites on a single fish species. From each site the accumulation of Fe is higher than the other minerals and also its presence in the water is higher in comparison. Therefore, I want to know why each concerned organ: gills, liver, kidney, muscle and integument, has the higher concentration of it?
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Iron in hemoglobin, myoglobin and enzymes is essential or housekeeping iron. Iron in ferritin is storage iron. The main stores are in liver and muscle and are measure by measuring tissue non-heme iron. Iron accumulated in excess of requirements is measured as this non-heme iron. Google 'tissue non heme iron' and you will find assays.
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Can someone send me the Pdf of the EPA (1996)- EPA 712-C-96-153 and 363 (Terrestrial Plant Toxicity).
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And this too.
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I am looking for the amphipod Gammarus tigrinus, which is native in some parts (East coast), but also invasive in other parts of US (Great Lakes). Can anyone confidently tell me where I can find them? Or, ideally, we could make arrangements to send some over to Lincoln, NE. Any help and/or suggestion is highly appreciated.
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Thanks for the suggestions!
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I want to research the quality of the water and everything related to Applied Ecology.
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I think it is correct to focus on some certain taxa, mayflies as a diverse group are good for a water quality control. I think that investigation on habitat preferences and biology of certain taxa, or whole communities reaction on environment is more interesting than improving indexes of water quality, and give more to science. PAST is the quite good software, and free, I recommend also PRIMER 6. Ordination methods (CCA aso) are commonly used. What is now incoming to limnology are SOM (neural network), this methods known from far are now tested in water ecosystems subject. I know that is Serbian paper from limnoecology which perform this method, available on RG. Non Metric Multidimensional Scaling (NMDS or MDS) is also fine.
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Methodology of sampling of macroinvertebrates in large and very large rivers is definitely neglected in both, scientific literature and different kind of technical reports. The whole concept is based mostly in experience in sampling wadeable rivers. Our team has considerable data to be able to provide some proposal for the methodology (very large rivers – the Danube, Sava, Tisa, as well as large rivers – the Drina, Kolubara….). We would really like to have better platform for discussion, so, in that way, we are looking for somebody interested in collaboration. It is not an easy job, but we should try. We have to admit that without good sampling methodology, the efforts to develop assessment systems for large rivers are ineffective.
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Use a vessel and trawl a large and heavy dredge with relativelly small mesh; it should work for mussels and large epibenthic animals; or mega box corers for small infauna
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Heavy metals deposited in water by different way and reach in human body through food chain and food web. Plankton is prime source of food for aquatic organism.
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Thank you.... Can we use any preservative in sample...