Science topic

Avian Influenza - Science topic

Explore the latest questions and answers in Avian Influenza, and find Avian Influenza experts.
Questions related to Avian Influenza
  • asked a question related to Avian Influenza
Question
3 answers
Can a Bird Flu Vaccine Protect Cows? A New Study Says Yes
Why This Matters
Bird flu (H5N1) is usually a problem for birds, but recently, it has been found in dairy cows. This raises concerns because cows produce milk consumed by humans, and the virus could potentially spread in unexpected ways. Scientists have now tested a bird flu vaccine on cows to see if it can protect them and if the immunity passes into their milk.
A new study published in Scientific Reports shows promising results: vaccinated cows developed strong immunity, and antibodies were even found in their milk. This could be a game-changer in preventing the spread of the virus. (Read the study here).
What Did the Study Find?
Researchers gave different doses of an inactivated bird flu vaccine to young cows (calves) and later to adult, milk-producing cows. They then measured the immune response in the animals’ blood and milk.
• Young Cows (Calves): The vaccine worked better with higher doses, producing stronger immunity.
• Milk-Producing Cows: Vaccinated cows not only developed antibodies but also passed them into their milk within two weeks.
This means that vaccinating dairy cows could help protect both the cows and potentially reduce the virus’s presence in milk.
What’s Next?
The study suggests that bird flu vaccines could be an important tool for protecting cattle and preventing further spread. However, more research is needed to:
• Test the vaccine in larger groups of cows.
• Monitor how long the immunity lasts.
• Improve the vaccine formula to make it as effective as possible.
Bottom Line
This study provides hope that a bird flu vaccine could help safeguard dairy cows and reduce risks to farmers and consumers. If successful on a larger scale, this approach could be a key step in managing bird flu outbreaks in cattle.
📖 Read the full study here: https://www.nature.com/articles/s41598-025-87831-w
  • asked a question related to Avian Influenza
Question
2 answers
Latest studies show emerging avian influenza virus in mammals especially cattles in USA. Does there is climate change involvement in this emergence?
Relevant answer
Answer
There may be an indirect effect, as climate change, which leads to delayed migration in some areas, leads to increased contact with poultry in these areas, and thus there is prior contact between poultry and livestock in these areas through several methods (such as transportation in the same cars or contact between breeders).
  • asked a question related to Avian Influenza
Question
28 answers
This RG open question is linked to the previous about the dramatic evolution (partly unexplainable) of COVID19 in Northern Italy during wave 1.
The previous RG open question is reported below🔴 and resulted in a completely alternative model for the evolution🟨 of SARS-CoV/2 from pre-pandemic phase to pandemic phase.
In this specific RG question, the intention is to create an open discussion on the possible emergence of a violent outbreak of avian flu or similar in central Europe.
This concern arises from a qualitative model that links three events which in the past have always characterized the violent explosion of a bird flu or similar.
---Coronavirus Epidemic/Pandemic;
---Conflict/War partly out of control;
---Pandemic avian flu or similar.
The ABSTRACT of the model can be consulted directly here.. https://www.researchgate.net/figure/46_fig2_367046404
This RG open question will serve to accumulate data both for and against this dire possibility.
Thanks to all the participants.
|--sv--|
🔴The novel Coronavirus in N. Italy, Lombardia 【 COVID19 / 2019nCoV / SARSCoV2 】 shows a fatality rate compatible with SARS-MERS. Why?? MAR.2020. -- https://www.researchgate.net/post/The-novel-Coronavirus-in-N-Italy-Lombardia-COVID19-2019nCoV-SARSCoV2-shows-a-fatality-rate-compatible-with-SARS-MERS-Why
🟨Link between the start of pandemic SARS-CoV/2 (COVID19) and the Huanan Seafood Wholesale Market in Wuhan (Hubei: China): the furin cleavage site of spike protein. FEB.2022. -- https://www.researchgate.net/publication/358443761
Relevant answer
Answer
Alarming antibody evasion properties of rising SARS-CoV-2 BQ and XBB subvariants. December 2022. Cell 186(2).
DOI:10.1016/j.cell.2022.12.018.
PMID:36580913.
PMCID:PMC9747694.
RG:366251425.
Abstract.--- The BQ and XBB subvariants of SARS-CoV-2 Omicron are now rapidly expanding, possibly due to altered antibody evasion properties deriving from their additional spike mutations. Here, we report that neutralization of BQ.1, BQ.1.1, XBB, and XBB.1 by sera from vaccinees and infected persons was markedly impaired, including sera from individuals boosted with a WA1/BA.5 bivalent mRNA vaccine. Titers against BQ and XBB subvariants were lower by 13-81-fold and 66-155-fold, respectively, far beyond what had been observed to date. Monoclonal antibodies capable of neutralizing the original Omicron variant were largely inactive against these new subvariants, and the responsible individual spike mutations were identified. These subvariants were found to have similar ACE2-binding affinities as their predecessors. Together, our findings indicate that BQ and XBB subvariants present serious threats to current COVID-19 vaccines, render inactive all authorized antibodies, and may have gained dominance in the population because of their advantage in evading antibodies.
  • asked a question related to Avian Influenza
Question
3 answers
I study pathogenesis in different animal and i have mortality i need the equation
Relevant answer
Answer
As Daniel Cebo said, you need data, use his after you collect your data. The key parameters you need to collect are: 1. Probable exposure day. 2. Day of first appearance of symptoms. 3. Day of death.
Estimating Probable exposure day is a bit tricky sometimes. See the article. A person that works with poultry, for instance, could be infected before the last day they were exposed. The infecting dose (or doses) will change the first onset of symptoms, with higher dose causing shorter incubation as a rule. In your writeup, say what your rules are. If you cannot collect probable exposure day, then say so. It's not always practical. If some agency insists on the total time when you can't collect field data, then just state your estimate, say 3 days as the average. Not all health systems have the manpower funding China has.
  • asked a question related to Avian Influenza
Question
1 answer
I am conducting Avian Influenza virus detection by real time rt PCR.
I did 4 target AI genes and 4 primer probe sets for PCR.
(H7 HA, H5 HA, NP and M target gene)
I run real time 4 time individually for that 4 target genes.
The result came out non-similarity.
(For Example,
In Sample no 1, H7 HA and H5 HA amplified (positive) but not amplified in NP gene and M gene .
In Sample no.2., result came all 4 gene were amplified.
In Sample no.3 NP gene and M gene and H5 HA gene came out positive result.)
How can I understand the nature of antigenic protein surfaces of virus and detection system of real time PCR.
Even though the same sample and same virus, can different results by using different target gene?
Relevant answer
Answer
Due to viral load and genetic variability, the results of detecting AIV using variety of target genes can vary.
  • asked a question related to Avian Influenza
Question
2 answers
Im trying to find an oligoprimer set for HA gene amplification of H5N1?
I will appreciate if you could point out a primer set for phylohenetic analysis by H5N1 HA gene sequencing.
Relevant answer
  • asked a question related to Avian Influenza
Question
4 answers
I am doing the hemagglutiantion elution assay for avian influenza, aiming to detect the balance between HA and NA activity. I mixed virus with 0.5% chicken erythrocytes on V-shaped hemagglutination reaction plates at 50 μl:50 μl and performed 2-fold multiplicative dilution, then incubated the plates at 4°C for 1h, then incubated the plates at 37°C for 6h and recorded the results every 1h. Theoretically, with the incubation condition at 37℃, NA activity can cut the agglutination linkage between red blood cells, at this time the positive wells of high dilution should turn negative first than the positive wells of low dilution, but it was found in the experiment that in addition to the phenomenon of turning negative in the positive wells of high dilution, the positive wells of low dilution also show a faster turning negative, even faster than the change rate of the positive wells of high dilution, I do not understand the reason behind this phenomenon. My positive criteria are no agglutination and no significant solid button in the wells, and the negative criteria are solid button and tear drop in the wells.
Relevant answer
Answer
there are many type of chemical reaction like end point , kinetic , enzymatic etc . they are time sensitive
  • asked a question related to Avian Influenza
Question
1 answer
I have rescued two different avian influenza viruses: one using internal genes (PB2, PB1, PA, NP, M, NS) from H9N2 and outer genes (HA & NA) from H7N2 virus. The second virus was rescued using the same internal cassette from H9N2 and outer HA & NA from H7N8. After 293 T cells transfection by 24 h I changed the opti-Mem medium with Opti-Mem 0.3% which left on cells for additional 48 h. . Confluent MDCK cells in 6-well plate was inoculated with optim-Mem supernatant with addition of 1 ug/ml media trypsin TPCK. CPE started to appear 1-2 days post infection, followed by collecting supernatant from infected MDCK, tested and confirmed by RT-PCR against HA, NA and NP. PCR products for HA, NA & NP was confirmed positive too by sanger sequencing. However, when we passaged two viruses in 9-day old spf eggs NO HA titre came at all using 0.5% washed turkey RBCs Moreover, supernatant from infected MDCK did not show any HA titre as well despite it was positive by RT-PCR.
Relevant answer
Answer
PCR result may be due to plasmid, seems there is no virus in supernatant. Thanks
  • asked a question related to Avian Influenza
Question
3 answers
Greetings. I intend to detect Avian Influenza H5N1 in formalin fixed paraffin embedded chicken tissue section with H5N1 VN04-8 Monoclonal Antibody (3G2) (Catalog # 500-301-976, Thermofisher) by immunohistochemistry. So far, I did not find any article describing reactivity of this antibody for formalin fixed paraffin embedded chicken tissue section. My concern is, is this antibody reactive for formalin fixed paraffin embedded chicken tissue section? Kind thanks in advance.
Relevant answer
Answer
  • asked a question related to Avian Influenza
Question
3 answers
Bird flu is a real threat. Lots species of aquatic birds migrate long distances. There are systems of rearing ducks in open water bodies in many countries. How do we really assess and predict scientifically the threat of avian influenza in such areas? Ecological studies? Immunological? molecular biological?Or Comprehensive long term studies?
Relevant answer
Answer
The highly pathogenic avian influenza virus subtype H5N1 is already panzootic in poultry, with attendant economic consequences. It continues to cross species barriers to infect humans and other mammals, often with fatal outcomes. The rationale for particular concern about an H5N1 is not its inevitability but its potential severity. An H5N1 pandemic is an event of low probability but one of high human health impact and poses a predicament for public health. Kindly check the following RG link:
  • asked a question related to Avian Influenza
Question
3 answers
In recent days, Iraq has lost many birds as a result of its elimination due to the outbreak of bird flu?
How the epidemic is transmitted to closed civilizations.
Do the bird migration season and its trends have an impact on the spread of the epidemic?
Relevant answer
Answer
by wild bird ,vehicles and workers
  • asked a question related to Avian Influenza
Question
24 answers
This pandemic is unique in many ways, but the fact remains that we can learn from past economic crises (for example, the global financial crisis) as well as from previous epidemics (for example, avian flu and swine flu, SARS, MERS, Ebola virus disease), which highlight the central role of employment, social protection and social dialogue in fight and recovery policies. In this regard, what lessons can be learned from this crisis?
Relevant answer
Answer
Thank you for the reply dear Hassan Izzeddin Sarsak.
  • asked a question related to Avian Influenza
Question
5 answers
How to calculate R_0, R_t, beta (the average number of contacts per person per time) and gamma? I try to defined SIR model, my data have infected, death and recovered. My country show the next information(I don’t know to calculate R_t) and I have the before said variable. Thank you.
Relevant answer
Answer
”Characteristics of and Important Lessons From the Coronavirus Disease 2019 (COVID-19) Outbreak in China”
  • asked a question related to Avian Influenza
Question
3 answers
I have done an experiment to study the persistence of avian influenza in lake water and in lake sediments. Do you know a good concentration method to use without the inactivation of the virus from water and sediments samples? I have to titrate the virus in MDCK cells.
Thank you very much,
Albert
Relevant answer
Answer
First, review the virus. https://viralzone.expasy.org/223
Influenza viruses are enveloped viruses. I would be surprised if you get anything that way. But, what I would do is be very careful with the sediment so you don't mechanically destroy any viruses that are there. Any compression or shearing forces on the sample will almost certainly destroy viruses there.
- So a basic question is, are these existing samples? If so, how were they harvested, how long were the stored and how? Etc..
In the lab, I would dilute the samples in normal saline to try to normalize the forces on the virus envelope. Natively, enveloped viruses are as saline as the cells that bud them off. This makes them absorb water, and causes osmotic bursting.
For sediment samples, i would take small aliquots and very gently agitate them to try to float the virus off. Then I would centrifuge at low speed and remove the supernatant. From there, you could use techniques for harvesting of enveloped particles. Here's some options.
Anything you do is going to tend to wreck influenza viruses. I would suggest that you first culture an enveloped virus in eggs, and learn how to harvest that. You will need to have positive controls anyway. For those, you will need to inject your cultured virus into a sediment or water sample after first slowly adjusting your cultured virus from normal saline aliquot to the level of salinity of your sample.
Before I did all that, what I would do first is send samples out for sequencing. Perhaps you have a sequencing lab already in your university? If so, then do that. That will tell you if there is even any significant RNA influenza RNA in there or not. For that, you will want to use this buffer. https://www.thermofisher.com/us/en/home/brands/product-brand/rnalater.html You can make it yourself too. It will just mean digging around and some more time.
At the worst, you will spend 1 or 2 years learning how to do virus culture, purifications, DNA/RNA sample preparations, assays, and how to use sequencing assembly software.
  • asked a question related to Avian Influenza
Question
7 answers
Hello everyone
I have 37% formaldehyde solution (formalin).I m working in avian influenza vaccine production.
Many articles mentioned 0.01% ,0.02% formalin inactivate virus .
But
How does I converted into 0.02% formalin from 37% formalin.
Then howmany ml of converted formalin should I add into allantoic fluid?
Relevant answer
Answer
To make 100 ml of 0.02% formalin, take 54 microlitre from your 37% formalin solution and make up the volume to 100 ml with your desired solvent medium(distilled water or others).
Hope you find this helpful.
  • asked a question related to Avian Influenza
Question
1 answer
Virus to be isolated : Avian Influenza Virus
Analyzed samples : Tracheal swabs
specimens won't be processed for bacterial identification
Relevant answer
Answer
The VTM prepared by Brain Heart Infusion Broth
media with 1000,000 IU Penicillin G, Gentamicin, and
Amphotericin B.
More detail in-
  • asked a question related to Avian Influenza
Question
4 answers
I need information about Salmonella affecting exotic birds
Relevant answer
Answer
I found AMR Salmonella from migratory bird also
  • asked a question related to Avian Influenza
Question
2 answers
It is clear that every year some new Avian Influenza sub types emerge in the sought east of Asia and then migratory birds carry them to other parts of the world
Relevant answer
Answer
yes true
  • asked a question related to Avian Influenza
Question
4 answers
when i enter name of reference strains of h5n1 on genebank to get its fasta format not detected
Relevant answer
Answer
Good questions.
For AIV genes/sequences or any bioinformatics data you can collect from Influenza Research Database easily. Please follow the link and get your information. You can contact with me for any problem.
  • asked a question related to Avian Influenza
Question
4 answers
Highly Pathogenic Avian Influenza (HPAI) commonly known as Bird Flu is a viral infection caused by strains of influenza that occur among birds. Veterinary extension and community interventions have a great effect in changing knowledge and practice toward avian influenza.
Relevant answer
Answer
Understanding the knowledge and practices of the farmers can help in designing appropriate strategies.
  • asked a question related to Avian Influenza
Question
6 answers
Iam working on pathotyping of avian influenza virus. I have sequenced some samples but it's quite difficult to detect HA cleavage site and presence of amino acids.
Relevant answer
Answer
Primers for sequencing of H5 and H7 subtypes of Influenza A virus you can find in this document : https://science.vla.gov.uk/flu-lab-net/docs/ai-influenza%20virus-pcr-H5-H7.pdf
Cleavage site motifs and pathotyping you can find in this document: http://www.offlu.net/fileadmin/home/en/resource-centre/pdf/Influenza_A_Cleavage_Sites.pdf
Best regards
  • asked a question related to Avian Influenza
Question
1 answer
I have read that high levels of nucleocapsid protein of SARS can be found circulating in the blood. Is this true for other viruses e.g. avian influenza and Newcastle disease virus?
  • asked a question related to Avian Influenza
Question
6 answers
In another meaning, does bovine serum albumin have any role in attachment/entry phase of avian influenza virus during virus replication cycle? does this modulate virus uptake?
Relevant answer
  • asked a question related to Avian Influenza
Question
4 answers
Hi, I will soon start working in the BSL3 lab with avian influenza viruses. Since they spread via aerosols, we are required to use facial protection, at least N95 or FFP3 mask. I used to wear a simple anti-dust FFP3 mask but after short-time use (about 1 hour) it was becoming unbearably uncomfortable, due to moisture build-up and feeling of not being able to breath freely. I will work in the BSL3 lab for at least 6 hours a day. Does anyone have any experience with the comfort of use of N95 masks for a prolonged time, or with any other kinds of facial protection that is more comfortable? PAPRs are out of our financial reach I'm afraid
Relevant answer
Answer
Hi. ..please read the attach file...
  • asked a question related to Avian Influenza
Question
2 answers
Hi, I am trying to make avian influenza virus VLP. I have a recombinant plasmid expressing HA,NA and M1 genes. I am using Drosophilla melanogaster S2 cells for these protein expression. When I do Western blots of the cell lysates I see HA and M1 protein bands. However,I do not see any bands in the supernatant. Is it normal to detect these proteins only on the cell lysates before sucrose gradient purification? Also, in order to see if these expressed HA,NA nad M1 proteins have self assembled to form VLP do I take the cell lysates or cell supernatant for the sucrose gradient purification? Also, what volume of culture do I need to grow the cells to in order to get decent amount of VLPs?
Your help and advices will be very much appreciated.
Relevant answer
Answer
Thanks Jan.
There was one paper where they were using S2 cells to make HIV VLPs so I wanted to see if I am able to produce influenza VLPs using S2 insect cells, eventhough in 90% of paper people have used Sf9 insect cells and baculovirus system. Also, I am not cotransfecting three individual plasmids with HA,NA and M1 each, instead I have designed one plasmid containing HA,M1,NA separated by self cleavage peptides P2A and T2A:
-HA-P2A-M1-T2A-NA-
The self cleavage peptides are not 100% efficient in cleaving peptides. Do you think co transfecting individual plasmids is better than using self cleavage peptides?
  • asked a question related to Avian Influenza
Question
2 answers
As we know Avian Influenza virus is located at type A group of Influenza viruses. H9N2 sub type of Avian influenza make a lot of trouble for poultry Industry in Asia and Middle east. In some country the admantane drugs use for controlling impact of this disease. Unfortunately these viruses become resist to this group of drugs rapidly.
In the other hand, concern of reassortment and sharing drug resistance genes between this subtype and seasonal flu type A viruses are always a big issue in public health section.
Relevant answer
Answer
this link is useful
https://www.nature.com › ... › original article -
regards
  • asked a question related to Avian Influenza
Question
2 answers
in which HA bind to
Relevant answer
  • asked a question related to Avian Influenza
Question
4 answers
My research proposal is about the antiviral effects of ginger against avian influenza virus. I was wondering if are there any other plants that could also be a potential antiviral agent for the said virus?
Relevant answer
Answer
There are some plants in Nigeria that have been found to have antiviral activities. I will try to get a list of them and attach it here soon. I suppose some of them should be active against avian influenza too
  • asked a question related to Avian Influenza
Question
5 answers
Want to know The diagnostic tests and screening tests for bird flu H5N1in India.
Relevant answer
Answer
Antigen detection ELISA is rapid. we are using
  • asked a question related to Avian Influenza
Question
4 answers
I expressed a hemaglutinin glycoprotein from Avian Influenza virus in an Adenovirus, I didnt see any HA, what would be the cause!? 
Relevant answer
Answer
Thanks
  • asked a question related to Avian Influenza
Question
4 answers
Next Generation Sequencing, Depth, Influenza Virus Genome
Relevant answer
Answer
I agree with Steven. Just to add a bit about NGS for intrahost analysis: with random amplification - which can be influenced by GC content and RNA structure - I typically shoot for an average of 5000x coverage per site with no less than 1000x. That is not always achievable but is my gold standard.
  • asked a question related to Avian Influenza
Question
4 answers
Western Blot can not detect the expression of protein, although the green fluorescence is expressed. Why ?
The vector is CMV promoter and the sequence is that eGFP-2A site-Myc-insert.
There are some MCS between 2A Site and Myc-tag.The cell line is 293T.The insert gene is a kind of polymerase which is from avian influenza.
I can perceive the green fluorescence frome the 293T cell by fluorescence inverse microscope.However,i can not detect the expression of my protein by Western Blot using Myc-antibody.Is the reason that the protein  which is a kind of virus's polymerase is a toxic protein for 293T cell and the protein is degraded? 
Relevant answer
Answer
If the myc tag falls into frame and there is no stopcodon in between the MCS shouldn´t matter. Did you try to use a GFP antibody? Also if you have an imaging system with which you can detect fluorescence you can check wheather the protein is at all present via GFP fluorescence. That way you can narrow it down more, so far I would try to check separately at which point things go wrong
1. Is the myc-tag expressed as part of the fusion protein you can observe at some point, I don´t know the situation, but if you just used someones plasmid or a stable transfected cell line you got from somewhere, I would sequence the for myself.
2. If so, is the sample you use for your Western Blot fluorescent (if you have acess to a nanodrop you should not have to sacrifice a lot of sample for that)?
3. If the protein with myc-tag is in the sample, is it just a problem with the particular antibody, so does another antibody (like anti-GFP) work?
If you can figure out, where you lose the myc-tagged protein, it is much easier to find the cause. Right now there are so too many possibilities.
  • asked a question related to Avian Influenza
Question
8 answers
Hi All,
  • I am trying to measure the immune response of chickens vaccinated with inactivated influenza vaccine. However, when trying to optimize the coating antigen concentration, i am observing a high background in the blank wells (coated only with antigen, skipping the primary antibody and then the usual procedures of ELISA).
  • The antigen used is whole avian influenza virus grown in eggs, concentrated by ultra-centrifuge and then purified with 30/60% sucrose step gradient.
  • The conditions i tried with ELISA:
  1. Coating with 4 concentration (4,2,1, and 0.5 ug/ml)
  2. Blocking combination: 5% or 10% nonfat dry milk.
  3. Washing 4X-6X with PBS + 0.05% tween
  4. Dilution of antibodies (1ry or 2ry ) is in 2.5% nonfat dry milk.
  5. Secondary antibody is goat anti chicken IgG in concentration of 1:1000 of diluent.
  • what i observed till now is as follow :
  1. 5% milk : OD of 1.7 in 4ug concentration, 1.4 in 2ug concentration, 1.0 in 1ug and finally 0.7 in 0.5ug.
  2. 10% milk (slight reduction in OD compared to 5%milk) 1.2 in 4ug concentration, 1.1 in 2ug concentration, 0.8 in 1ug and finally 0.4 in 0.5ug.
Is there any suggestions to reduce this backgrounds?
Thanks
Relevant answer
Answer
Hi Mohamed,
I have been measuring influenza specific antibodies (IgA, IgG & IgM) in human subjects vaccinated with TIV (Kurupati et al. B cell responses to the 2011/12-influenza vaccine in the aged. Aging (Albany NY). 2013 Mar;5(3):209-26). The protocol should be the same in chickens too. We do purify the virus in the eggs by similar method as you described but with minor modifications. 
Points to consider:
  1. I have used 55-10% sucrose density gradient
  2. The antigen concentration we used was 10 ug/mL (after titration)
  3. Blocking buffer is 3% BSA in PBS for 2 hours at RT
  4. You also need to titrate your primary and secondary antibodies based on abundance. In our case  we have used 1/100 for IgA, IgM and 1/500 dilution for  primary antibodies from serum. 
  5. Same goes for secondary. I used 1/1000 for IgA, IgM and 1/3000 for IgG.
Hope this helps.
Raj
  • asked a question related to Avian Influenza
Question
5 answers
For better understanding of pathogenesis of avain influenza virus. Also please provide the key for rapid diagnosis of avian influenza.
Relevant answer
Thank you Serageldeen Sultan.
  • asked a question related to Avian Influenza
Question
17 answers
I need to inject day-old chicks with avian influenza virus for determination of intracerebral pathogenicity index (ICPI). Can any one guide me about the technique? What gauge of needle to use, what should be the depth and exact location for insertion of needle? I am unable to find details of the technique. Can any one help?
Relevant answer
Answer
Hello, ICPI is so far the most accurate in-vivo  biological test to as certain pathogenicity of NDV strains. I have done several of such in my studies. Many publications  show out the procedure well but you need to understand that some key steps are left out.
Send me your email so that we can share details of the procedure.
  • asked a question related to Avian Influenza
Question
5 answers
AIV allantoic fluid on WhatMan FTA cards.
Relevant answer
Answer
FTA cards are working very well and are very useful if you want to ship your material for instance, cince the chemicals in the FTA card will inactivate the viruses will preserving the RNA. However, you should not overload the card with material because anything that would not be well inside the paper will not be inactivated.
You can then keep the cards at 4°C (in a small plastic bag with dessicant to maintain the cards dry) for quite a long time.
You can use standard RNA extraction to purify the RNA from the card, after cutting small circles out of the card (6 mm diameter circles seem to be enough).
  • asked a question related to Avian Influenza
Question
5 answers
http://www.bbc.co.uk/programmes/b05sxq9b#auto (go to 10mins 35 secs) - with a new variant of bird flu demonstrating a devastatingly mortality rate in the US, will culling halt the spread of H5N2?
Relevant answer
Answer
For new variant avian influenza culling is must to control the variant.
  • asked a question related to Avian Influenza
Question
3 answers
There are H5N1 viruses which replicate to higher HA titer in SPF eggs. Does that mean those viruses are more adapted to poultry birds?
Any reference would be acknowledged.
Thanks
Relevant answer
Answer
Honestly a better empirical test than just titers would be to do a simple longitudinal growth kinetics in replicate eggs with proper negative controls over set time-points (0h, 2h, 4h, 8h, 12h, then 1d, 2d, 3d, 4d, 5d or something like that) and look at starting point of titer recovered at like 30 min p.i. (maybe there is an infection/entry advantage but kinetics are otherwise the same), timing/rate of virus production (how parallel are the slopes?), peak titer (if titers plateau, are they plateauing at the same max titer?), etc.
edit: i know you're looking for just an answer, but the best way esp. if you want to publish your work is to have your own (supplementary) data you did yourself under your own laboratory conditions to test kinetics etc. unless the answer is accepted by literally every specialist in the influenza field.
  • asked a question related to Avian Influenza
Question
4 answers
I usually use chick embryo (9-11 days old)  for inoculation of influenza in allantoic route. Has anyone used 13 days old chick embryo for allantoic inoculation of influenza and worked with him?
Relevant answer
Answer
I have had the same result with Binod. 
  • asked a question related to Avian Influenza
Question
3 answers
The question: Does anybody know scientific papers, measures or medicaments against the avian influenza H5N1 as reason for the death during March 2015 of more than 140 Dalmatian pelicans in Srebarna nature reserve (Bulgaria) and Danube Delta (Romania)?           Additional explanation: On 25 March 2015 21 Dalmatian pelicans from Srebarna nature reserve were found dead in the breeding colony. An avian influenza H5N1 was proved for two of them. Several days later over 100 Dalmatian pelicans from Danube Delta in Romania were found dead. Nobody knows what to do! It is not known if the arriving Great White Pelicans will be affected also. The problem is of great importance and urgency.
Relevant answer
Answer
You can find some information on WAHID Interface (http://www.oie.int/wahis_2/public/wahid.php/Wahidhome/Home):
Here is what they document on the outbreak in Romania: "On 25 March, the County Sanitary Veterinary and Food Safety Directorate (CSVFSD) of Tulcea was notified by the Danube Delta Biosphere Reserve Administration (ARBDD) about the identification of 64 carcasses of pelicans in an inhabited area, on Ceaplace island, Sinoe lake. This area is located at the border of Tulcea and Constanta Counties, and no other localities with domestic birds are found on a radius more than 10 km. The entire population of pelicans counted initially more than 250 birds, adults and young. Excluding the dead pelicans (found in different stages of putrefaction), no other birds were observed with clinical signs in the area. Also, in the area were observed other birds species, still unspecified."
And about the outbreak in Bulagaria: "Dalmatian pelican (Pelecanus crispus) real-time PCR positive for HPAI subtype H5N1 was found dead on 22 January in Poda protected area. The samples will be tested for confirmation by inoculation of chicken embryos. The pelican was found dead together with a black-headed gull (Chroicocephalus ridibundus) in the framework of the passive surveillance under the national avian influenza surveillance and control program approved by European Commission. The black-headed gull was tested with negative result for avian influenza."
Measures applied: 
- Control of wildlife reservoirs
- Screening
- Zoning
- Vaccination prohibited
- No treatment of affected animals
There is actually not much that you can do when wild birds are affected. You can only try to prevent transmission to other birds, and especially try to protect domestic poultry flocks by increasing biosecurity measures.
  • asked a question related to Avian Influenza
Question
6 answers
I want to design primers for H1N1 fragments. Are there universal primers for amplification of all the types of avian influenza?
Relevant answer
Answer
Thank you Dejan, I'll tray it
  • asked a question related to Avian Influenza
Question
12 answers
We are seeing plenty of cases of vaccine failure as outbreaks of velogenic Newcastle disease and Infectious Bronchitis which are reported in in vaccinated flocks. How do you think should one investigate failures? If outbreaks occur in presence of sufficient antibody titres. Will virus isolation and sero-neutralization in ovo be enough. Or should one do challenge tests in vaccinated birds? 
Any suggestions?
Relevant answer
Answer
Agreed with points mentioned.Vaccine quality may be an issue and should be checked. Functional, eg neutralisation, assays should be used. Reliance should not be placed on ELISA. Prevalent virus strains should be checked for genetic change. Challenge tests are the gold standard but require time and adequate facilities and would probably be done as a last resort.
  • asked a question related to Avian Influenza
Question
6 answers
Hello,
I'd like to start with reverse genetics of AIVs and it's the only thing that is not commercially available. Can anybody help me? Thanks.
Relevant answer
Answer
depend  on subtupe of influenza vieus  and isolation of virus  place transer of year
  • asked a question related to Avian Influenza
Question
6 answers
Any suggested methods or literature that engage with the determination of viral load?
Relevant answer
Answer
You can find relevant findings in
Shortridge KF, Zhou NN, Guan Y, Gao P, Ito T, et al. (1998) Characterization of avian H5N1 influenza viruses from poultry in Hong Kong. Virology 252: 331-342.
also reported in
Ssematimba, A., Hagenaars, T.J., de Jong, M.C.M., 2012b. Modelling the Wind-Borne Spread of Highly Pathogenic Avian Influenza Virus between Farms. PLoS ONE 7, e31114.
  • asked a question related to Avian Influenza
Question
13 answers
In  recent years several viral diseases like bird flu,avain flu, swine flu ,ebola etc has called panic in several countries. Such diseases nolonger remain localized but, lilely to be spread globally. What strategy should be adopted to combat these diseases. Since this being a global issue we should discuss how RG can help in this matter.
Relevant answer
Answer
Dear Tilahun I agrree with your remark that lack of strtegy is one of the main cause of spread of outbreak. But ,cooperation from public is also plays an important role. For example in recent spurt in swine flu in India a large number of people spanning from business men, engineers asw ell as students are unawre about cause, precaution as well as whta type of medicine should be used to control swine flu.
  • asked a question related to Avian Influenza
Question
13 answers
I tried 5 different gene combinations out of which I could rescue only 2 viruses. What could be the probable reason apart from the genetic stability of virions?
Relevant answer
Answer
If the problem is an avian-tropic PB2 (627E for instance) then co-cultures with an avian fibroblast cell such as QT35s or DF1s has worked for us in the past.
Have you ruled out trivial reasons such as a duff plasmid? In these circumstance I tell my students (hello Alice!) to (a) check the plasmid is supercoiled, (b) the right size (they love the quick and simple Nanodrop spec but it doesn't tell you everything) and (b) to check that the plasmid expresses what it's meant to - either by western blotting and/or (for a P/NP gene) by minireplicon assay.
  • asked a question related to Avian Influenza
Question
4 answers
The macrophage and heterophil play key roles in this initial replication and dissemination  of AI viruses.
Can you tell me what is their role?
Another question:
What is the difference between mucinous degeneration and hyperplasia of goblet cell?
and what is the mechanism of them ?
What is the relationship between mucin gene and cytokine?
Does mucin contain cytokines?
Relevant answer
ok I see. It is in the condition of avian as the host. Heterophil`s is just like neutrophil in mammalian host.
  • asked a question related to Avian Influenza
Question
1 answer
This virus has genetic characteristics that concern, as already identified mutations in virus known to cause cases in mammals. Other mutations allow the virus is able to bind to cells in the upper airways that would make be transmitted from person to person. (see: Uyeki et al. Global Concerns (see: Uyeki et al. Global Concerns Regarding Novel Influenza A (H7N9) Virus Infections, New England Journal of Medicine, apr_2013).
Relevant answer
Answer
Absolutely. A big concern actually. The WHO is monitoring it already.
  • asked a question related to Avian Influenza
Question
4 answers
We have been unsuccessfully growing PR8 in HD-11 cells (a chicken macrophage cells line). Our protocol for PR8 infection of HD-11 cells in 24 well plate is: First grow HD-11 cells in 24 well plate for 24hrs. Then titrate PR8 in virus growth medium (DMEM, 0.3% BSA, 10mM Hepes, 100 unitsml penicillin, and 100gml streptomycin) with 1ug/ml trypsin. Remove the cell growth medium and add 200ul of inoculum per well into 24 well plate. Incubate the plate at 37oC for 2hrs, then remove the infectious medium with virus growth medium with 1ug/ml trypsin. However, the virus growth medium we made can't support HD-11 growth very well. Controls of HD-11 cells with only virus growth medium (no trypsin, no virus) showed that cells died 24hr post replacement of medium. Obviously, 0.3%BSA can't support HD-11 cells growth very well. Could anyone working with avian influenza virus give me some advice on this? Thanks!
Relevant answer
Answer
We remove the FCS when adding the PR8. Then we wash the cells and replace the medium with 1% FCS with trypsin.
  • asked a question related to Avian Influenza
Question
1 answer
Is it safe to perform experimental infection of poultry with low pathogenicity avian influenza viruses (LPAIVs) in the absence of biosecurity level-3 (BSL-3) facilities? Do they they pose significant risk for humans?
Relevant answer
Answer
Hiii Zaheer
Its not safe to perform animal expts with LPAIVs without proper biosecurity. There is always chance of LPAI to mutate HPAIV. Due to genetic drift and shift, the virus is on regularly evolving itself to adapt host. so that its better to do animal expts in biosecurity level-3 (BSL-3) facilities
  • asked a question related to Avian Influenza
Question
2 answers
I want to design a vaccine using epitope prediction which is related to HLA, how the characteristics HLA can be using to design vaccine?
Relevant answer
Answer
Hi John,
Thank you for your information. It helps me.
Regards,
Feimmy
  • asked a question related to Avian Influenza
Question
7 answers
We have tried in PBS but the results looks quite weak.
Maybe you have different checked solution to propose?
Relevant answer
Answer
We usually use heat inactivated/ UV inactivated whole PR8 virus as vaccine and get a good response. Serum from mice vaccinated with formalin inactivated vaccine (PR8 virus) works pretty well with plates coated with whole inactivated or live virus (PR8) too. The HA on whole virus should be able to react with the Ab against HA in the serum. We usually look for total IgG and IgG1 and IgG2 isotype response. If you think coating is an issue, you could try using Carbonate buffer instead of PBS (Recipe: http://protocolsonline.com/recipes/buffers/carbonate-buffer/). Hope that helps