Science topic

Adhatoda - Science topic

A plant genus in the family ACANTHACEAE. Adhatoda vasica Nees is a source of vasicine.
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I want to analyze few set of NMR data of two experimental sets. Can anyone help me with the PCA analysis, on how to do the anaysis and where?
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PLEASE IS THAIR ANY WEBINAR TO LEARN AMIX SOFTWARE
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LC-ESI-MS
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Have you find any answer for your question? I would appreciate if you could share it with me.
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all these plants in Liliaceae family
but I need classify as species, variety, and subspecies
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Greetings Dear Huda
  Please, press on the following website link for more information.
With my good wishes
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Can anyone identify this Oryzias sp.?
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 It is difficult to identify species of Oryzias from photographs, as some internal characters are needed; I would suggest that you use the key of Parenti (2008: 542-544) for identification.
Parenti, L. R. 2008. A phylogenetic analysis and taxonomic revision of ricefishes, Oryzias and relatives (Beloniformes, Adrianichthyidae). Zoological Journal of the Linnean Society v. 154: 494-610.
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if the plant extract gives effect
as much does not isolate the material responsible for this effect??
there is a large number of researches that are limited to the extract only
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happy to your honorable visit
many thank's
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For example, soil nitrate and ammonium data that is only reported to a whole number
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I was wondering if the data were from, say, a home soil test kit --- similar to water test strips --- that have a colorimetric reaction that is interpreted only in rough numbers.  For example, for a water test strip for a "high range" nitrate test the values might be 0, 1, 2, 5, 10, 20, 50 mg/L.  If you are using this for, say, unpolluted waters, it is easy to get all values of 1 or all values of 2.  And even then, it can be difficult to determine between a value of say 1, or 2, or 5. For an egregious example, see https://i0.wp.com/preclaboratories.com/wp-content/uploads/2016/10/NAT-Nitrate-test-strip-label.jpg .  Some kits use multiple color spots on the strip to improve the precision of the measurement. And some have a choice of "low range" or "high range" kits.
In some cases, this data is of little value from a statistical point of view.  Practically, it may be useful, perhaps, to know that the nitrate in the lake is about 1 or 2 or 3.5 mg/L and not say 10 or 20 mg/L.  But statistically, the analyst may not be able to be more precise than saying "it's in the 1 to 3.5 color range."
If the data are of this type, caution should be used in doing anything statistical with the data, even treating it as categorical data.  For example, imagine measuring soil nitrate, and using a scale where < 10 mg/kg is insufficient for crop yield, >=21 mg/kg is sufficient, and in between is in between.  Maybe the the way you are measuring the soil nitrate, the values are being reported as all 25 mg/kg.  But maybe in reality the analyst would be unable to distinguish values corresponding to 10 or 20 or 25 mg/kg.  In this case it would be wrong to conclude that the test indicated all the soils had sufficient nitrogen.  In fact, this method of measuring soil nitrate would not be useful in this context.
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iam doing biological control experiment and based on the references i find this formula (  DI = [(R disease
grades x number of infected)/(total checked plants x
4)] x 100 )but am not clear how to apply it. one treatment 12 plants divided to 3 pot 4 each. thank you very much in advance 
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Dear All
Need your expert opinion for identification of this plants
thanks in advance
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Why cant it be Rutaceae?.  Check for Glycosmis species
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i am doing research on medicinal plant. when i estimate total alkaloid content face a lot of problem and failure to get result. so i request any body share the protocol for alkaloid estimation
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thanks very much mam
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Dear All
I already analyzed dragon fruit peel using lc-qtrap-esi msms to identify type of phenolic compounds by using full scanning mode. Here I attached file for your perusal. Can I said this phenolic compound is confirm with data base library matching and ion fragment showed fingerprint for each compounds?. Do you agree with me? As i'm not use authentic standard to make confirmation, just depend on libry database. the one things is the name of phenolic compounds from dragon fruit peel are quite strange
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I mean it is not possible - you have no standards for RT and mass and have no exact mass at your system (what about isobars?). You may work with ramping the collision energy and compare ramped spectra, if they are in library - it is real proof, but we use only standards - it is better, because in special cases for our analysis without exact mass MS/MS/MS on the trap is necessary.
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Is there any library/source or database through which we can search that the new compounds identified by GCMS in a specific plant is already been discovered in other plant or microorganism?
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Essentially all chemicals (synthetic and natural origin) receive a CAS Registry Number. In this case, these compounds can be considered as "known". With this number, you can make database searches, in which natural sources this compound has been identified already. One of the largest databases is the Chemical Abstracts Service with their Scifinder software, a commercial product of the American Chemical Society.
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i want know the difference.
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The terms "crude" and "true" are not scientific terminology but a sort of slang. Generally a "crude" protein refers to a mixture of the protein in question and other proteins: meaning an impure preparation of the protein. "True" protein is not a term with which I am familiar. A protein preparation can be "pure" meaning it is homogeneous in that protein and contains no other measureable contaminating other proteins. It is possible that other different proteins are still present but at concentration levels below that can be detected with available measuring procedures.
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Anyone has a guide book etc in which the identified fungal secondary metabolites characterized by chromatography, MS, NMR etc. Please, I very need it.
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SPE Cartridge and chemical structure
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  • Many thanks for your advices. I will try to send them an email about it 
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I have a data frame like:
Plant     Sz1  Sz2    ...
plant 1    1    4      ...
plant 2    3    4      ...
plant 3    2    4      ...
I would like to keep only the Sz columns that have average values > a certain limit (ex: > 2.5) and return a new table with only those columns and the original data. In this example the output would be:
Plant       Sz2    ...
plant 1      4      ...
plant 2      4      ...
plant 3      4      ...
Any ideas?
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Hi Nelson! The code I used (previous post) solved it! It works!
The idea of making column names as numeric can be interesting. I will save this piece of code you sent and keep it in mind for another time! Thanks for the help man! 
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Is it possible, two compounds have same molecular formula, almost same molecular weight, but different molecular structure and name?
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Ok... Thanks Tuhin
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For analysis of AceK Sachorin Cyclamate. for sample preparation 50g weight 100ml water by using standards can we do the analysis of sweetners can you create the method for analysis of sweetners.
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yes ,i agree with bruce 
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I have a TLC purified (purity was not checked further) bioactive compound. for identification of the compound it was  subjected to LCMS. i got the mass fragmentation? i am new to LC MS ! How to make sense out of it ? if not a detailed result, a partial identification of the compound will be helpfull ? please help ? i am seekin help form MS experts
thank you
Dr Kishor K keekan 
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Dear Dr. Keekan,
Firstly, if you know the molecular weight and solubility of your compound, you should prepare a standard solution of 1 ppm from your compound in the suitable solvent and make manual tuning to get the optimum conditions for MS parameters and LC parameters with suitable mobile phase.
Secondly, if you don't know any information about your compound, you should inject it on scan mode and try to get the molecular weight of it and its mass spectra to identify it.
with my best wishes
M. H. Abdelwahed 
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I'm working on teramnus labialis. can some one send me full protocol for extracting plant compounds using column chromatography?
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Dear Pushpak,
Dr. Tapan Seal <kaktapan65@yahoo.com> of our institution works on these aspects. If you like you can contact him.
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Does anyone know a "cheap" quantitative method to analyse the content of RuBisCO (Ribulose-1,5-bisphosphat-carboxylase/-oxygenase) in a dried leaf-powder?
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Yes sds-page is probably the cheapest and easiest way. 
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How to identify active ingredient from plant extracts by LC-MS analysis?
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1. Use very variable extracts of of the plant of interest (different origins, plant parts, developmental states, extraction solvents etc.).
2. Measure bioactivity and LC-MS profile of each extract.
3. See which peaks are correlated with bioactivity, for example by using PLS.
4. The peaks should be isolated to confirm their bioactivity and their identity.
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I am wondering if there is some method for collection of different fractions from capillary electrophoresis.
When I analyze cDNA sample on capillary electrophoresis, there are more specific transcripts (splicing variants). Unfortunatelly, I am not able to characterize them for sure - my conclusions are just assumptions. That is why I need to separate, collect and sequenate the fractions.
Do you know or do you use method/machine appropriate for this purpose?
Thank you for your suggestions
Best
Pavla
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with a minority product you will have to screen a lot of colonies but you can mix colonies in each pcr reaction . say 5 colonies  per pcr reaction then any pcr showing 2 bands the mixed colonies can be replated and re screened.No purification of dna is necessary the colonies just lyse and amplify
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Hi
I am working on terpene cyclase genes. I have cloned, overexpressed and purified the putative terpene cyclase enzyme and then set up a enzyme - substrate reaction. I have extracted the product in organic compounds (pentane:DCM) and dried with Ammonium sulfate and concentrated using rota-vapour. The extracted product was then run on 5MS column. I am now analysing and trying to identify the peaks thus obtained. There are two methods: 1. To run the standard reference and match the test compound peak and the MS fragment pattern (in this case target molecular ion peak fragment and the base peak fragment should be given)
2. To match the MS fragment pattern with the Mass library
But, I don't know how to analyse unreported or novel compounds. Kindly, suggest me how to analyse it or any study material which can help me in successful identification of those compounds.
Thank you in anticipation.
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Thank you Dr. Misra for putting your effort and time to write me in such a nice detail.
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Look like the genus Cyclops.  As to species, there are over 400 so you will need a taxonomic key.
Order: Cyclopoida
Family: Cyclopidae
Genus: Cyclops
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Dear researchers
How can alkaloids heliotropin and europin be found in a yield of Mentha?Are these compounds occurring at the specific specie or there was a mistake during sampling,probably with the weed Heliotropium europaeum?
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Pyrrolizidine alkaloids (PA) are a common contaminant in teas, herbs and even honey. Check out these papers:
and a good review: 
'Pyrrolizidine alkaloids: occurrence, biology, and chemical synthesis' in Nat. Prod. Rep., 2017, 34, 62
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what is the Phytochemical screening and antimicrobial activity(Disc diffusion method) of Adhatoda vasica(Local Name :Bashok)
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Isolation and identification of phenolic compounds from Gynura ... - NCBI
https://www.ncbi.nlm.nih.gov › NCBI › Literature › PubMed Central (PMC)
Isolation and Characterization of Phenolic Compounds from ... - MDPI
Phenolic Compounds and Flavonoids as Plant Growth Regulators ...