Zhonghe Zhou’s research while affiliated with Chinese Academy of Sciences and other places

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Publications (233)


Figure 3. Photograph of the crest feather (a) and prepared blocks of the feather barb (b) 534 for thin sectioning. The sampled spots for the sliced feather are indicated as long red-535 colored cubes with their respective positions in (b). (c) to (f) are (STEM) images obtained from 536 individual slices as indicated in (b). The shape and arrangement of the melanosome packing 537 (ACHP, asymmetric compact hexagonal packing) is clearly revealed and labeled with white 538 arrows in (d); (c) and (d) are derived from the cross-section; (e) and (f) are derived from the 539 nearly longitudinal section. The red triangles in (d) and (f) indicate the hooked connections 540 of the melanosomes. 541
Figure 4. FDTD modeling results. (a) Representative multilayer melanosome model; (b) 543 Schematic drawing of the reflectance calculation setup of the feather barb. X-Y incident plane 544 (blue) is perpendicular and the Y-Z incident plane (orange) is parallel to the special 545 melanosome longitudinal axis. í µí¼ƒ 1 and í µí¼ƒ 2 are incident angles in X-Y and Y-Z incident planes, 546 respectively. The blue dashed box (R) indicates the area where the reflection spectra are 547 simulated and calculated. (c) Angle-dependent reflectance spectra calculated for p-and s-548 polarized light by FDTD modeling with X-Y incident plane. (d) Angle-dependent reflectance 549 spectra calculated for p-and s-polarized light by FDTD modeling with Y-Z incident plane. 550 551 552 Supplementary Materials 553 554
Iridescent structural coloration in a crested Cretaceous enantiornithine bird from Jehol Biota
  • Preprint
  • File available

October 2024

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97 Reads

Zhiheng LI

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Thomas A. Stidham

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Julia A. Clarke

A combination of sectioning and microscopy techniques, along with the application of finite-difference-time-domain modeling on a fossil feather, novelly results in the estimation of the range of iridescent colors from fossilized melanosomes preserved in the elongate head crest feathers of a new Cretaceous enantiornithine bird. The densely packed rod-like melanosomes yield are estimated to have yielded from red to deep blue iridescent coloration of the head feathers. The shape and density of these melanosome may have also further increased the feather’s structural strength. This occurrence on a likely male individual is highly suggestive of both a signaling function of the iridescent crest, and a potential behavioral role in adjusting the angle of light incidence to control the display of this iridescent structural coloration.

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Transformation of the pectoral girdle in pennaraptorans: critical steps in the formation of the modern avian shoulder joint

February 2024

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136 Reads

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2 Citations

Important transformations of the pectoral girdle are related to the appearance of flight capabilities in the Dinosauria. Previous studies on this topic focused mainly on paravians yet recent data suggests flight evolved in dinosaurs several times, including at least once among non-avialan paravians. Thus, to fully explore the evolution of flight-related avian shoulder girdle characteristics, it is necessary to compare morphology more broadly. Here, we present information from pennaraptoran specimens preserving pectoral girdle elements, including all purportedly volant taxa, and extensively compare aspects of the shoulder joint. The results show that many pectoral girdle modifications appear during the evolution from basal pennaraptorans to paravians, including changes in the orientation of the coracoid body and the location of the articulation between the furcula and scapula. These modifications suggest a change in forelimb range of motion preceded the origin of flight in paravians. During the evolution of early avialans, additional flight adaptive transformations occur, such as the separation of the scapula and coracoid and reduction of the articular surface between these two bones, reduction in the angle between these two elements, and elongation of the coracoid. The diversity of coracoid morphologies and types of articulations joining the scapula-coracoid suggest that each early avialan lineage evolved these features in parallel as they independently evolved more refined flight capabilities. In early ornithothoracines, the orientation of the glenoid fossa and location of the acrocoracoid approaches the condition in extant birds, suggesting a greater range of motion in the flight stroke, which may represent the acquisition of improved powered flight capabilities, such as ground take-off. The formation of a new articulation between the coracoid and furcula in the Ornithuromorpha is the last step in the formation of an osseous triosseal canal, which may indicate the complete acquisition of the modern flight apparatus. These morphological transitions equipped birds with a greater range of motion, increased and more efficient muscular output and while at the same time transmitting the increased pressure being generated by ever more powerful flapping movements in such a way as to protect the organs. The driving factors and functional adaptations of many of these transitional morphologies are as yet unclear although ontogenetic transitions in forelimb function observed in extant birds provide an excellent framework through which we can explore the behavior of Mesozoic pennaraptorans.


Fig. 1. Effects of the four individual DNA classes on species tree inference. (A) Comparison of the number of significantly discordant nodes for trees estimated using NJst and RAxML methods across all six pairwise combinations of DNA classes. The significance of differences between NJst and RAxML trees was examined using a binomial test. Note that the number of significantly discordant nodes (bootstrap support >= 80%) for trees built using RAxML is significantly greater than for trees built using NJst. (B) Consistency of the four DNA classes with the multispecies coalescent model. The concordant ratio indicates the proportion of gene tree heterogeneity that can be explained by the multispecies coalescent model. (C) Compatibility of maximum likelihood gene trees built from the four DNA classes. The discordant ratio indicates the proportion of significantly discordant majority triplets across all pairwise comparisons among DNA classes. Abbreviation: Inter, intergenic.
Fig. 2. Phylogenetic relationships of modern birds. The time-calibrated tree of 124 avian species was constructed using the coalescence-based method NJst from a combination of maximum likelihood gene trees of CDS, intron, and intergenic segments after removing 30% outliers. Numbers on nodes indicate bootstrap support values, with numbers >90% not shown. Background shading indicates the Late Cretaceous era.
Fig. 4. Diversity changes in modern birds, placental mammals, multituberculate mammals, marine ray-finned fishes, holometabolous insects (butterflies, bees, ants, etc.), and flowering plants from the Cretaceous to the present time. The panel on the Upper Right shows the correlation coefficients of diversity changes between angiosperms and each of the five animal groups: a) crown Aves, b) placental mammals, c) multituberculates, d) marine ray-finned fishes, and e) holometabolous insects. The curve of average global temperature represents a proxy for climatic changes during the Cretaceous and Cenozoic. Note that among the six taxonomic groups analyzed in the figure, the KPg extinction event only had a noticeable negative impact on the biodiversity of ray-finned fishes, but not on the other five groups. The diversity curves of placental mammals, multituberculates, ray-finned fishes, holometabolous insects, and angiosperms were plotted based on data extracted from Liu et al. (25), Wilson et al. (35), Guinot and Cavin (36), Nicholson et al. (37), and Condamine et al. (26), respectively. The curve of global temperature changes was plotted based on data extracted from Condamine et al. (26).
Genomes, fossils, and the concurrent rise of modern birds and flowering plants in the Late Cretaceous

February 2024

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296 Reads

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20 Citations

Proceedings of the National Academy of Sciences

The phylogeny and divergence timing of the Neoavian radiation remain controversial despite recent progress. We analyzed the genomes of 124 species across all Neoavian orders, using data from 25,460 loci spanning four DNA classes, including 5,756 coding sequences, 12,449 conserved nonexonic elements, 4,871 introns, and 2,384 intergenic segments. We conducted a comprehensive sensitivity analysis to account for the heterogeneity across different DNA classes, leading to an optimal tree of Neoaves with high resolution. This phylogeny features a novel Neoavian dichotomy comprising two monophyletic clades: a previously recognized Telluraves (land birds) and a newly circumscribed Aquaterraves (waterbirds and relatives). Molecular dating analyses with 20 fossil calibrations indicate that the diversification of modern birds began in the Late Cretaceous and underwent a constant and steady radiation across the KPg boundary, concurrent with the rise of angiosperms as well as other major Cenozoic animal groups including placental and multituberculate mammals. The KPg catastrophe had a limited impact on avian evolution compared to the Paleocene–Eocene Thermal Maximum, which triggered a rapid diversification of seabirds. Our findings suggest that the evolution of modern birds followed a slow process of gradualism rather than a rapid process of punctuated equilibrium, with limited interruption by the KPg catastrophe. This study places bird evolution into a new context within vertebrates, with ramifications for the evolution of the Earth’s biota.



Cretaceous fossil birds from China

January 2024

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154 Reads

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2 Citations

Geological Society London Special Publications

The explosive radiation of early birds has been well documented by the extraordinary discoveries of the Early Cretaceous fossil birds from China in the past three decades. They have greatly expanded the diversity, disparity, and temporal distribution of Mesozoic birds, refining our knowledge of the evolutionary path leading to the characteristic avian body plan, such as feathers and powered flight, locomotion and habitat differentiation, diet and digestion, reproduction and development, feather colors and display. In addition, studies on the geological background of the Jehol Biota that produced the majority of the Chinese Cretaceous birds have provided important clues to our understanding of the taphonomy as well as the interaction between deep geology process and biological evolution in northeastern China and East Asia during the Early Cretaceous. Future multidisciplinary studies are expected to advance our knowledge of how the paleogeography of Early Cretaceous birds was formed, what had impacted the changes of the diversity of early birds in China, and the roles of early birds had played in the Early Cretaceous terrestrial ecosystem.


Fossil evidence sheds light on sexual selection during the early evolution of birds

January 2024

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251 Reads

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1 Citation

Proceedings of the National Academy of Sciences

The impact of sexual selection on the evolution of birds has been widely acknowledged. Although sexual selection has been hypothesized as a driving force in the occurrences of numerous morphological features across theropod evolution, this hypothesis has yet to be comprehensively tested due to challenges in identifying the sex of fossils and by the limited sample size. Confuciusornis sanctus is arguably the best-known early avialan and is represented by thousands of well-preserved specimens from the Early Cretaceous Jehol lagerstätte, which provides us with a chance to decipher the strength of sexual selection on extinct vertebrates. Herein, we present a morphometric study of C. sanctus based on the largest sample size of this taxon collected up to now. Our results indicate that the characteristic elongated paired rectrices is a sexually dimorphic trait and statistically robust inferences of the sexual dimorphism in size, shape, and allometry that have been established, providing the earliest known sexual dimorphism in avian evolution. Our findings suggest that sexual selection, in conjunction with natural selection, does act upon body size and limb length ratio in early birds, thereby promoting a deeper understanding of the role of sexual selection in large-scale phylogenetic evolution.


Citations (60)


... In eastern Asia, the Early Cretaceous Jehol Biota sensu stricto consist of numerous fossils in exceptionally well preserved, non-marine strata distributed around western Liaoning, northern Hebei and southeastern Mongolia of China (Gu, 1962;Chen, 1988Chen, , 1999Chang et al., 2003;Zhou et al., 2003Zhou et al., , 2017Zhou et al., , 2021Xu et al., 2020). This biota was first described in Grabau (1923) who established the Jehol Series as Lower Cretaceous lacustrine strata bearing the fish Lycoptera in Lingyuan of western Liaoning (originally recorded as 'Rehe Province'). ...

Reference:

New age constraints on the early Jehol Biota of Luanping, northeastern China
The Jehol Biota:: an exceptional window into Early Cretaceous terrestrial ecosystems
  • Citing Chapter
  • January 2018

... During the last 25 years, an extraordinary diversity of fossil birds has been described from the Early Cretaceous Jehol Group of North Eastern China Wang et al., 2022b;Wu et al., 2023;Wang et al., 2024;Zhou and Wang, 2024), including a series of lineages not directly related to the living avians, such as Jeholornithidae, Sapeornithidae, Jinguofortisidae, Confuciusornithidae, and Enantiornithes, together with various taxa closer to the crown group (¼Aves/Neornithes), which with the latter form the Euornithes (Chiappe et al., 1999;Zhou and Zhang, 2002;Zhou, 2004Zhou, , 2014O'Connor et al., 2015;Wang et al., 2020b). The rich fossil record from the Jehol Biota has documented many steps along the evolutionary process leading to the modern avian skeletal plan from the ancestral avialan condition (Cau, 2018), including key innovations in the skull and mandible (e.g., Zheng et al., 2018;Bailleul et al., 2019), in the flight apparatus (e.g., O'Connor et al., 2010;O'Connor and Zhou, 2012), and in the growth pattern (O'Connor et al., 2015). ...

First Edentulous Enantiornithine (Aves: Ornithothoraces) from the Lower Cretaceous Jehol Avifauna
  • Citing Article
  • February 2024

Cretaceous Research

... Wu et al. ( 1 ) conducted a phylogenomic analysis resulting in a new time frame for the diversification of modern birds, concluding that the rapid radiation of Neoaves occurred well before the Cretaceous-Paleogene (K-Pg) extinction event and that this catastrophic event did not affect their diversification dynamics. Here, we show that the divergence times obtained by Wu et al. were compromised by problems with their choices of fossils and calibration strategy. ...

Genomes, fossils, and the concurrent rise of modern birds and flowering plants in the Late Cretaceous

Proceedings of the National Academy of Sciences

... During the last 25 years, an extraordinary diversity of fossil birds has been described from the Early Cretaceous Jehol Group of North Eastern China Wang et al., 2022b;Wu et al., 2023;Wang et al., 2024;Zhou and Wang, 2024), including a series of lineages not directly related to the living avians, such as Jeholornithidae, Sapeornithidae, Jinguofortisidae, Confuciusornithidae, and Enantiornithes, together with various taxa closer to the crown group (¼Aves/Neornithes), which with the latter form the Euornithes (Chiappe et al., 1999;Zhou and Zhang, 2002;Zhou, 2004Zhou, , 2014O'Connor et al., 2015;Wang et al., 2020b). The rich fossil record from the Jehol Biota has documented many steps along the evolutionary process leading to the modern avian skeletal plan from the ancestral avialan condition (Cau, 2018), including key innovations in the skull and mandible (e.g., Zheng et al., 2018;Bailleul et al., 2019), in the flight apparatus (e.g., O'Connor et al., 2010;O'Connor and Zhou, 2012), and in the growth pattern (O'Connor et al., 2015). ...

Cretaceous fossil birds from China
  • Citing Article
  • January 2024

Geological Society London Special Publications

... The exposed strata in the peripheral area of the study site include the Longbeixi Formation, Lishan Formation, Changlin Formation, Nanyuan Formation, Huangkeng Formation, and Zhaixia Formation ( Figure 2). Xu et al. [12] discovered a dinosaur fossil of a new species of ornithopteran dinosaur in the Late Jurassic Nanyuan Formation in the peripheral area of Fozi Mountain, which was subsequently named "Strange Fujian Dragon". It is the latest known ornithopteran dinosaur in the world in the late Jurassic and occupies the southernmost geographical position. ...

A new avialan theropod from an emerging Jurassic terrestrial fauna

Nature

... This groundbreaking research, documented in publications such as those by Wu et al. (2023) and Wu et al. (2018), represents a significant milestone in the fields of vertebrate paleontology and paleoanthropology. The Paleoenvironment Laboratory at IVPP continues to lead the way in elucidating the complex relationships between ancient ecosystems and the evolution of life forms, paving the path for exciting new discoveries in the field. ...

Intra-gastric phytoliths provide evidence for folivory in basal avialans of the Early Cretaceous Jehol Biota

... Bird predation is a powerful selective force shaping many behavioral and morphological traits in insect prey, e.g., flight performance (18,20), body size (21), flight muscles (22), wing shape, and color pattern (23,24). In the Late Jurassic, paravians radiated and diversified, resulting in the appearance of birds capable of powered flight (25)(26)(27). Therefore, the rise of birds from the latest Jurassic might provide a natural experiment to test the importance of predation and decode predatorinduced macroevolutionary trends. ...

Low morphological disparity and decelerated rate of limb size evolution close to the origin of birds

Nature Ecology & Evolution

... These responses are the result of various cellular and molecular processes and manifest as reactions to mild or severe stimuli. Hence the thirtiary dentin is categorized into reactive dentin and regenerative dentin [33]. ...

Comparative microstructural study on the teeth of Mesozoic birds and non-avian dinosaurs

... These characristics have been used as evidence indicating adult or subadult for the holotype (IVPP V 12330) and referred specimen (IVPP V 13475) of Microraptor Xu 2002;Xu and Li 2016). Additionally, the fused sacrum has also been used to indicate for adult or subadult in other Jehol dromaeosaurids (Zheng et al. 2010;Lü and Brusatte 2015), troodontids (Xu and Norel 2004), and basal avialans Li et al. 2023). However, some other ontogenetic assessments based on the skeletal fusion present contradictions. ...

Decoupling the skull and skeleton in a Cretaceous bird with unique appendicular morphologies

Nature Ecology & Evolution

... A short, comma-shaped bone is interpreted as the quadratojugal (Figs. 1 and 2 and Extended Data Figs. 2-6); it differs from the flattened L-shaped quadratojugal known from some other enantiornithines 31,35,36 . Although disarticulated, the left and right quadratojugals are preserved in similar positions on both sides of the skull, implying that they are close to their natural positions (Fig. 1b,c), probably contacting the quadrate caudoventrally (Figs. 1 and 2 and Extended Data Fig. 5). ...

Insight into the evolutionary assemblage of cranial kinesis from a Cretaceous bird

eLife