Zachary Markovich’s research while affiliated with University of Florida and other places

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Publications (3)


Figure 1. Different ciliary mutants in lifespan regulation (A) An illustration of C. elegans sensory cilium showing multiple different ciliary components involved in ciliogenesis and maintenance. The impacts of these components (highlighted in red) on longevity are studied in subsequent experiments (B-H). (B) The daf-10(p821) mutant with defective intraflagellar transport particle A is significantly longer lived than wild-type (WT) worms. (C) The osm-1(p808) mutant with defective intraflagellar transport particle B is significantly longer lived than WT worms.
Figure 2. dve-1 RNAi suppresses ciliary mutations-conferred longevity (A) In addition to daf-16 RNAi, dve-1 RNAi strongly suppresses the greatly extended lifespan of daf-10(p821) mutant animals. (B) dve-1 RNAi strongly suppresses the isp-1 RNAi-induced mitoUPR activation. The zcls13[Phsp-6::gfp] transcriptional reporter line for mitoUPR 35 is used in this experiment.
Figure 3. The mitoUPR transcription factor ATFS-1 is not involved in ciliary modulation of longevity (A) Illustration of signaling pathways required for mitoUPR activation in C. elegans. Among them, two parallel pathways are centered around two transcription factors/regulators, ATFS-1 and DVE-1, both of which are highlighted in blue. (B-I) atfs-1 RNAi has no significant impacts on the lifespans of WT (B) and daf-10(p821) (C), osm-1(p808) (D), dyf-1(mn335) (E), osm-3(p802) (F), xbx-1(ok279) (G), klp-11(tm324) (H), and osm-12(n1606) (I) mutant worms.
Figure 4. Ciliary mutations-conferred longevity does not require mitoUPR (A) No changes of the hsp-6 mRNA level are observed in the long-lived daf-10(p821), normal-lifespan klp-11(tm324) or short-lived osm-12(n1606) mutant backgrounds,
Figure 6. DVE-1 acts in a mitoUPR-independent fashion downstream of dietary-restrictionmodulated and germline-signaling-modulated lifespan

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A mitochondrial unfolded protein response-independent role of DVE-1 in longevity regulation
  • Article
  • Full-text available

October 2024

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32 Reads

Cell Reports

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Adriana Abreu

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Zachary Markovich

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[...]

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The special AT-rich sequence-binding (SATB) protein DVE-1 is widely recognized for its pivotal involvement in orchestrating the retrograde mitochondrial unfolded protein response (mitoUPR) in C. elegans. In our study of downstream factors contributing to lifespan extension in sensory ciliary mutants, we find that DVE-1 is crucial for this longevity effect independent of its canonical mitoUPR function. Additionally, DVE-1 also influences lifespan under conditions of dietary restriction and germline loss, again distinct from its role in mitoUPR. Mechanistically, while mitochondrial stress typically prompts nuclear accumulation of DVE-1 to initiate the transcriptional mitoUPR program, these long-lived mutants reduce DVE-1 nuclear accumulation, likely by enhancing its cytosolic translocation. This observation suggests a cytosolic role for DVE-1 in lifespan extension. Overall, our study implies that, in contrast to the more narrowly defined role of the mitoUPR-related transcription factor ATFS-1, DVE-1 may possess broader functions than previously recognized in modulating longevity and defending against stress.

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Comparative analysis of junctional complexes across evolutionary models of intestinal barriers. (a), in the vertebrate intestine, junctional complexes comprise tight junction, adherens junction, and desmosomes, with each complex containing multiple key junctional proteins. (b), in the Drosophila intestine, adherens junctions and septate junctions form the protective junctional complex among intestinal epithelial cells. Many evolutionarily conserved junctional proteins are expressed in the fly intestinal barrier. (c), the C. elegans apical junction consists of the cadherin-catenin complex and DLG-1/AJM-1 complex, with many junctional proteins sharing homology with higher species.
Popular methods for assessing intestinal permeability. (a), the oral probe excretion assay is a widely employed indirect method where probe molecules traverse the gastrointestinal system and potentially cross the intestinal barrier, subsequently quantified through renal excretion assays to gauge intestinal permeability. (b), the transepithelial electrical resistance (TEER) assay measures the electrical resistance across a cell monolayer, commonly used to assess the integrity and barrier function of epithelial or endothelial cell layers. (c), the gut permeability staining assay involves the visualization of fluorescently labeled molecules or tracers that permeate through the gut epithelium, thus providing insights into intestinal barrier integrity and permeability. This method is commonly used in model organisms with transparent anatomy.
A summary scheme of the intrinsic cellular signaling pathways modulating intestinal permeability.
Gut microbes and common chemicals regulate intestinal junctional complexes in a complex manner. (a), many beneficial microbes (e.g., L. plantarum, A. muciniphila, B. longum) promote the gut barrier integrity and reduce cytokine release and inflammation. (b), detrimental microbes (e.g., C. albicans, E. faecalis, S. aureus) undermine gut barrier integrity by diminishing junctional protein expression and organization. (c), a summary of microbes and chemicals that are known to affect gut barrier permeability through diverse mechanisms.
Deciphering internal and external factors influencing intestinal junctional complexes

August 2024

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66 Reads

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1 Citation

The intestinal barrier, an indispensable guardian of gastrointestinal health, mediates the intricate exchange between internal and external environments. Anchored by evolutionarily conserved junctional complexes, this barrier meticulously regulates paracellular permeability in essentially all living organisms. Disruptions in intestinal junctional complexes, prevalent in inflammatory bowel diseases and irritable bowel syndrome, compromise barrier integrity and often lead to the notorious “leaky gut” syndrome. Critical to the maintenance of the intestinal barrier is a finely orchestrated network of intrinsic and extrinsic factors that modulate the expression, composition, and functionality of junctional complexes. This review navigates through the composition of key junctional complex components and the common methods used to assess intestinal permeability. It also explores the critical intracellular signaling pathways that modulate these junctional components. Lastly, we delve into the complex dynamics between the junctional complexes, microbial communities, and environmental chemicals in shaping the intestinal barrier function. Comprehending this intricate interplay holds paramount importance in unraveling the pathophysiology of gastrointestinal disorders. Furthermore, it lays the foundation for the development of precise therapeutic interventions targeting barrier dysfunction.


Distinct temporal actions of different types of unfolded protein responses during aging

December 2020

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74 Reads

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8 Citations

Journal of Cellular Physiology

Proteotoxic stress is a common challenge for all organisms. Among various mechanisms involved in defending such stress, the evolutionarily conserved unfolded protein responses (UPRs) play a key role across species. Interestingly, UPRs can occur in different subcellular compartments including the endoplasmic reticulum (UPRER), mitochondria (UPRMITO), and cytoplasm (UPRCYTO) through distinct mechanisms. While previous studies have shown that the UPRs are intuitively linked to organismal aging, a systematic assay on the temporal regulation of different type of UPRs during aging is still lacking. Here, using Caenorhabditis elegans (C. elegans) as the model system, we found that the endogenous UPRs (UPRER, UPRMITO, and UPRCYTO) elevate with age, but their inducibility exhibits an age‐dependent decline. Moreover, we revealed that the temporal requirements to induce different types of UPRs are distinct. Namely, while the UPRMITO can only be induced during the larval stage, the UPRER can be induced until early adulthood and the inducibility of UPRCYTO is well maintained until mid‐late stage of life. Furthermore, we showed that different tissues may exhibit distinct temporal profiles of UPR inducibility during aging. Collectively, our findings demonstrate that UPRs of different subcellular compartments may have distinct temporal mechanisms during aging.

Citations (2)


... Intestinal barrier integrity is fundamental to intestinal health, and its dysregulation relates to the pathophysiology of numerous gastrointestinal diseases [30]. Preservation and restoration of this barrier are key targets in the management of gastrointestinal disorders. ...

Reference:

Enhancement of gut barrier integrity by a Bacillus subtilis secreted metabolite through the GADD45A‐Wnt/β‐catenin pathway
Deciphering internal and external factors influencing intestinal junctional complexes

... Aging, a time-related deterioration in organisms, is caused by changes in the homeostatic regulation of intrinsic processes, which can be accelerated by environmental stressors. Extensive studies in model organisms have demonstrated that during aging, the abilities to cope with different stresses and activate cellular stress responses are reduced [1][2][3][4][5][6] . Animals respond to mitochondrial perturbation by activating the mitochondrial unfolded protein response (UPR mt ), a mitochondrion-to-nucleus communication that activates the transcription of mitochondrial stress response genes 7,8 . ...

Distinct temporal actions of different types of unfolded protein responses during aging

Journal of Cellular Physiology