Yu-Xin Zhang’s research while affiliated with Chinese Academy of Sciences and other places

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Publications (93)


Effects of Mercury Pollution on Soil Organic Carbon Stability and Carbon-fixing Microbial Communities
  • Article

December 2024

Huan jing ke xue= Huanjing kexue / [bian ji, Zhongguo ke xue yuan huan jing ke xue wei yuan hui "Huan jing ke xue" bian ji wei yuan hui.]

Yu-Xin Zhang

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Yue-Bing Sun

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Ren-Fu Zhang

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[...]

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Hong-Tao Jia

Agomirs upregulating carboxypeptidase E expression rescue hippocampal neurogenesis and memory deficits in Alzheimer’s disease
  • Article
  • Full-text available

April 2024

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29 Reads

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2 Citations

Translational Neurodegeneration

Background Adult neurogenesis occurs in the subventricular zone (SVZ) and the subgranular zone of the dentate gyrus in the hippocampus. The neuronal stem cells in these two neurogenic niches respond differently to various physiological and pathological stimuli. Recently, we have found that the decrement of carboxypeptidase E (CPE) with aging impairs the maturation of brain-derived neurotrophic factor (BDNF) and neurogenesis in the SVZ. However, it remains unknown whether these events occur in the hippocampus, and what the role of CPE is in the adult hippocampal neurogenesis in the context of Alzheimer’s disease (AD). Methods In vivo screening was performed to search for miRNA mimics capable of upregulating CPE expression and promoting neurogenesis in both neurogenic niches. Among these, two agomirs were further assessed for their effects on hippocampal neurogenesis in the context of AD. We also explored whether these two agomirs could ameliorate behavioral symptoms and AD pathology in mice, using direct intracerebroventricular injection or by non-invasive intranasal instillation. Results Restoration of CPE expression in the hippocampus improved BDNF maturation and boosted adult hippocampal neurogenesis. By screening the miRNA mimics targeting the 5’UTR region of Cpe gene, we developed two agomirs that were capable of upregulating CPE expression. The two agomirs significantly rescued adult neurogenesis and cognition, showing multiple beneficial effects against the AD-associated pathologies in APP/PS1 mice. Of note, noninvasive approach via intranasal delivery of these agomirs improved the behavioral and neurocognitive functions of APP/PS1 mice. Conclusions CPE may regulate adult hippocampal neurogenesis via the CPE–BDNF–TrkB signaling pathway. This study supports the prospect of developing miRNA agomirs targeting CPE as biopharmaceuticals to counteract aging- and disease-related neurological decline in human brains.

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Inhibitory effect of compound 16 on cell viability in human lung cancer cells. (A) The cell viabilities of three human lung cancer (H1975, A549, and PC9) cells treated with various concentrations (0, 5, 10, 20, 40, and 80 μM) of 16 for 24, 48, and 72 h. (B) Effect of compound 16 on the ability of cells to form colonies in H1975 cells using a colony-formation assay. (C) Quantification of the colony-formation assay. *p < 0.05, **p < 0.01, and ***p < 0.001 compared with the control.
Compound 16 induced apoptosis in H1975 cells. (A) Flow cytometric analysis of cell death treated with different concentrations (10, 20, 40, and 80 μM) of 16 using Annexin V/PI dual staining. (B) H1975 cells were treated with 16 for 24 h, subjected to FITC and PI staining, and visualised using fluorescence microscopy. *p < 0.05, **p < 0.01, and ***p < 0.001 compared with the control.
Compound 16 induced caspase-dependent apoptosis in H1975 cells. (A) Western blotting analysis of Bax, Bcl-2, Akt, and Cyt-C protein levels. (B) Western blotting analysis of caspase-9, and -3. (C) Cell viability following treated with compound 16 (40 μM) for 24 h alone or with pre-treatment with z-VAD (20 μM) as measured by MTT assay. **p < 0.01 compared with the control.
Compound 16 induced necroptosis in H1975 cells. (A) Morphological characteristics of the control using electron microscopy. (B) Morphological characteristics of 16-treated H1975 cells showing necrosis. Red arrowheads indicated cell nuclear chromatin condensation, massive mitochondrial damage, and disruption of plasma membrane. (C) Western blotting analysis of RIP1, RIP3, p-RIP3, MLKL, and p-MLKL protein levels. (D) Cell viability following treated with compound 16 (40 μM) for 24 h alone or with pre-treatment with Nec-1 (20 μM) and NSA (20 μM) as measured by MTT assay. *p < 0.05 and **p < 0.01 compared with the control.
Knock-down of RIP3 using siRNA protected against compound 16 induced cell death in H1975 cells. (A) The H1975 cells were transfected with RIP3 siRNA, and whole-cell lysates were subjected to western blot analysis. (B) After transfection with RIP3 siRNA1171, the cells were treated with compound 16 (40 μM) for 24 h, alone or with pre-treatment with Nec-1. The cell viability was measured by MTT assay. *p < 0.05 compared between the groups of compound 16 and 16 with Nec-1.

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Novel isobavachalcone derivatives induce apoptosis and necroptosis in human non-small cell lung cancer H1975 cells

December 2023

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16 Reads

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5 Citations

In this study, seventeen isobavachalcone (IBC) derivatives (1–17) were synthesised, and evaluated for their cytotoxic activity against three human lung cancer cell lines. Among these derivatives, compound 16 displayed the most potent cytotoxic activity against H1975 and A549 cells, with IC50 values of 4.35 and 14.21 μM, respectively. Compared with IBC, compound 16 exhibited up to 4.11-fold enhancement of cytotoxic activity on human non-small cell lung cancer H1975 cells. In addition, we found that compound 16 suppressed H1975 cells via inducing apoptosis and necroptosis. The initial mechanism of compound 16 induced cell death in H1975 cells involves the increasing of Bax/Bcl-2 ratio and Cyt C protein level, down-regulating of Akt protein level, and cleaving caspase-9 and -3 induced apoptosis; the up-regulation of RIP3, p-RIP3, MLKL, and p-MLKL levels induced necroptosis. Moreover, compound 16 also caused mitochondrial dysfunction, thereby decreasing cellular ATP levels, and resulting in excessive reactive oxygen species (ROS) accumulation.


Inhibitory effect of compound 8 on cell viability in MDA-MB-231 cells
Effects of the compound 8 on the migration ability of MDA-MB-231 cells. (A) The migration effect of MDA-MB-231 cells treated with various concentration of (0, 2, 4, and 8 µM) compound 8 for 24 h by wound-healing assay; (original magnification 100×). (B) Relative migration of the treated MDA-MB-231 cells was analyzed. Data presented as mean ± SD. ***p < 0.001, **p < 0.01, *p < 0.05 (n = 3)
Effects of the compound 8 on the migration and invasion ability of MDA-MB-231 cells. (A) MDA-MB-231 cells were exposed to various concentration of (0, 2, 4, and 8 µM) compound 8 for 24 h to evaluate the migration and invasion activity by transwell assay; (original magnification 200×). (B) Relative migration and invasion of the treated MDA-MB-231 cells was analyzed. Data presented as mean ± SD. ***p < 0.001, **p < 0.01, *p < 0.05 (n = 3)
Effects of the compound 8 on HIF-1α, MMP-2, and MMP-9 protein of MDA-MB-231 cells. (A) HIF-1α, MMP-2, and MMP-9 protein levels were determined by western blotting following various concentration of (0, 5, 10, and 20 µM) compound 8 for 48 h. β-actin expression was included as an internal control. (B) Relative HIF-1α, MMP-2, and MMP-9 protein levels of the treated MDA-MB-231 cells were analyzed. Data presented as mean ± SD. **p < 0.01, *p < 0.05 vs. control
Effects of compound 8 on apoptosis of MDA-MB-231 cells. (A) MDA-MB-231 cells were exposed to various concentration of (0, 5, 10, and 20 µM) compound 8 for 48 h to measure apoptosis by flow cytometry with Annexin V/PI staining. (B) Relative apoptosis of the treated MDA-MB-231 cells was analyzed. Data presented as mean ± SD. **p < 0.01, *p < 0.05 vs. control. (C) Bax, Bcl-2 and Akt protein levels were determined by western blotting following various concentration of (0, 5, 10, and 20 µM) compound 8 treatment for 48 h. β-actin expression was included as an internal control. (D) Relative Bax, Bcl-2 and Akt protein levels of the treated MDA-MB-231 cells was analyzed. Data presented as mean ± SD. ***p < 0.001, **p < 0.01, *p < 0.05 vs. control
Semi-synthesis and in vitro anti-cancer effects evaluation of novel xanthohumol derivatives

December 2023

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34 Reads

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1 Citation

Molecular Diversity

Xanthohumol (Xn) is a chalcone compound isolated from Humulus lupulus Linn., that has various biological activities. In this study, eight Xn derivatives were synthesized by Williamson, Mannich, Reimer-Tiemann, and Schiff base reactions, and evaluated for their in vitro cytotoxic activity against five human cancer cell lines (MDA-MB-231, MCF-7, CNE-2Z, SMMC-7721, and H1975). Among these compounds, 2-((E)-2,4-dihydroxy-5-((E)-3-(4-hydroxyphenyl)acryloyl)-6-methoxy-3-(3- methylbut-2-en-1-yl)benzylidene)hydrazine-1-carboximidamide (8) exhibited the most potent cytotoxic activity against the five cancer cells, with IC50 values ranging from 4.87 to 14.35 µM. Wound-healing and transwell assays showed that compound 8 inhibited the migration and invasion of MDA-MB-231 cells by down-regulation HIF-1α, MMP-2 and MMP-9 protein expression. We further demonstrated that compound 8 induced apoptosis of MDA-MB-231 cells by increasing of Bax/Bcl-2 ratio and down-regulation of Akt protein expression.


Semisynthesis and in Vitro Anti-cancer Effect of New Magnolol Derivatives on the Cell Proliferation, Apoptosis, Migration, and Invasion of Human Hepatocellular Carcinoma SMMC-7721 Cells

November 2023

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4 Reads

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1 Citation

Chemical & Pharmaceutical Bulletin

Four new magnolol derivatives were synthesized and evaluated for their in vitro anti-cancer properties. Among these, compound 3 showed the most potent cytotoxic activity against the SMMC-7721, SUN-449, and HepG2 human hepatocellular carcinoma cell lines, with IC50 values of 3.39, 4.11, and 6.88 µM, respectively. Compound 3 also induced apoptosis of SMMC-7721 cells by down-regulating Bcl-2 and Akt protein levels, up-regulating of Bax protein level, and cleaving caspase-9 and -3. In addition, transwell assays showed that compound 3 significantly suppressed the migration and invasion of SMMC-7721 cells, which was confirmed based on the down-regulation of hypoxia inducible factor-1α (HIF-1α), matrix metalloproteinase-2 and -9 (MMP-2, and MMP-9) protein levels. Fullsize Image


Atmospheric Ozone Concentration Prediction in Nanjing Based on LightGBM

July 2023

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14 Reads

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2 Citations

Huan jing ke xue= Huanjing kexue / [bian ji, Zhongguo ke xue yuan huan jing ke xue wei yuan hui "Huan jing ke xue" bian ji wei yuan hui.]

Based on the air quality data and conventional meteorological data of the Nanjing Region from January 2015 to December 2016, to analyze the characteristics of O3 concentration changes in the Nanjing Region, a light gradient boosting machine (LightGBM) model was established to predict O3 concentration. The model was compared with three machine learning methods that are commonly used in air quality prediction, including support vector machine, recurrent neural network, and random forest methods, to verify its effectiveness and feasibility. Finally, the performance of the prediction model was analyzed under different meteorological conditions. The results showed that the variation in O3 concentration in Nanjing had significant seasonal differences and was affected by a combination of its pre-concentration, meteorological factors, and other air pollutant concentrations. The LightGBM model predicted the ground-level O3 concentration in the Nanjing area more precisely to a large extent (R2=0.92), and the model outperformed other models in prediction accuracy and computational efficiency. In particular, the model showed a significantly higher prediction accuracy and stability than that of other models under a high-temperature condition that was more likely prone to ozone pollution. The LightGBM model was characterized by its high prediction accuracy, good stability, satisfactory generalization ability, and short operation time, which broaden its application prospect in O3 concentration prediction.


Fig. 7 Graphical Abstract for TMCO1 deficiency-induced the activation of IRE1α-XBP1s axis. Graphical Abstract: under basal conditions, the monomeric inactive state of IRE1α is maintained through the interaction with chaperone BiP. In the case of TMCO1 knockdown, the induced overfilling of Ca 2+ signaling decreases the interaction between IRE1α and BiP, increases IRE1α dimerization and then promotes cell survival through sensitizing IRE1α-XBP1 axis
ER Ca2+ overload activates the IRE1α signaling and promotes cell survival

July 2023

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68 Reads

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11 Citations

Cell & Bioscience

Background: Maintaining homeostasis of Ca2+ stores in the endoplasmic reticulum (ER) is crucial for proper Ca2+ signaling and key cellular functions. Although Ca2+ depletion has been known to cause ER stress which in turn activates the unfolded protein response (UPR), how UPR sensors/transducers respond to excess Ca2+ when ER stores are overloaded remain largely unclear. Results: Here, we report for the first time that overloading of ER Ca2+ can directly sensitize the IRE1α-XBP1 axis. The overloaded ER Ca2+ in TMCO1-deficient cells can cause BiP dissociation from IRE1α, promote the dimerization and stability of the IRE1α protein, and boost IRE1α activation. Intriguingly, attenuation of the over-activated IRE1α-XBP1s signaling by a IRE1α inhibitor can cause a significant cell death in TMCO1-deficient cells. Conclusions: Our data establish a causal link between excess Ca2+ in ER stores and the selective activation of IRE1α-XBP1 axis, underscoring an unexpected role of overload of ER Ca2+ in IRE1α activation and in preventing cell death.



Restoring Carboxypeptidase E Rescues BDNF Maturation and Neurogenesis in Aged Brains

April 2023

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61 Reads

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2 Citations

Life Medicine

Adult neurogenesis declines with age due to the less functional neural stem cells (NSCs) and niches, but the underlying molecular bases for this impaired condition remain unclear. Here we analyzed >55,000 single-cell transcriptomes from two discrete neurogenic niches across the mouse lifespan, and identified new features and populations in NSCs, new markers and neurogenic regional-specific alternations during aging. Intercellular communication analysis revealed defects in brain-derived neurotrophic factor (BDNF)-TrkB signaling cascade in old NSCs. Carboxypeptidase E (CPE) was found to be highly enriched in NSCs, and played a crucial role in mature/pro-BDNF balance and adult neurogenesis. Diminishment of CPE with aging resulted in impaired generation of BDNF, thus limiting the neurogenesis in old neurogenic niches. Restoring CPE expression markedly rescued the adult neurogenesis by increasing the production of mature BDNF, offering an attractive therapeutic strategy for the treatment of certain disorders in regions associated with constitutive neurogenesis.


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Semi-synthesis and in vitro anti-tumor effects evaluation of novel xanthohumol derivatives

March 2023

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67 Reads

Xanthohumol (Xn) is a chalcone compound isolated from Humulus lupulus Linn. and has various biological activities. In this study, eight Xn derivatives were synthesized by Williamson, Mannich, Reimer-Tiemann, and Schiff base reactions, and five cancer cell lines (MDA-MB-231, MCF-7, CNE-2Z, SMMC-7721, H1975) were evaluated for in vitro cytotoxic activity. Among these, 2-(( E )-2,4-dihydroxy-5-(( E )-3-(4-hydroxyphenyl)acryloyl)-6-methoxy-3-(3-methylbut-2-en-1-yl)benzylidene)hydrazine-1-carboximidamide ( 8 ) exhibited the best potent cytotoxic activity against the five cancer cells, with IC 50 values ranging from 4.87 to 14.35 µM. Wound-healing and transwell assays also showed that compound 8 could better inhibit the migration and invasion of MDA-MB-231 cells, and western blotting assays showed that it could reduce protein expression of HIF-1α, MMP-2 and MMP-9. In addition, flow cytometry assays showed that compound 8 could induce apoptosis in MDA-MB-231 cells by up-regulation of Bax and down-regulation of Bcl-2 and Akt expression.


Citations (65)


... The positive association between CBPE and intelligence suggests that CBPE may enhance cognitive abilities by promoting neurogenesis and synaptic plasticity through the BDNF-TrkB signaling pathway. This is consistent with findings that upregulating CBPE expression can rescue hippocampal neurogenesis and memory deficits in Alzheimer's disease models [71]. These results underscore the potential of targeting CBPE to improve cognitive function and mitigate neurodegenerative conditions. ...

Reference:

Mendelian Randomization Estimates the Effects of Plasma and Cerebrospinal Fluid Proteins on Intelligence, Fluid Intelligence Score, and Cognitive Performance
Agomirs upregulating carboxypeptidase E expression rescue hippocampal neurogenesis and memory deficits in Alzheimer’s disease

Translational Neurodegeneration

... When apoptosis of tumor cells is inhibited, cells may evade immune surveillance, thereby enhancing their survival and propagation (72). In vitro studies have revealed that lung cancer cells can suppress the initiation of apoptosis by upregulating the antiapoptotic protein Bcl-2, which blocks the release of apoptogenic cytochrome c; they can also inhibit apoptosis by downregulating pro-apoptotic proteins, such as Bax and Bak, thus promoting their survival within the bone marrow microenvironment (73,74). Furthermore, lung cancer cells can interact with other cells in the bone microenvironment (such as OBs, OCs, and BMAs), not only augmenting the anti-apoptotic capabilities of lung cancer cells but also enhancing the function of OCs (73). ...

Novel isobavachalcone derivatives induce apoptosis and necroptosis in human non-small cell lung cancer H1975 cells

... For example, magnolol has been shown to possess potential in mitigating oxidative stress in white adipocytes, and is thus being considered a promising strategy for combating obesity (20). It has the ability to inhibit the proliferative and migratory capacities of diverse types of human cancer, including pancreatic cancer (21), cervical cancer (22) and hepatocellular carcinoma (23). Furthermore, the administration of magnolol has been shown to confer advantages in attenuating inflammation in patients with diabetic periodontitis (24). ...

Semisynthesis and in Vitro Anti-cancer Effect of New Magnolol Derivatives on the Cell Proliferation, Apoptosis, Migration, and Invasion of Human Hepatocellular Carcinoma SMMC-7721 Cells
  • Citing Article
  • November 2023

Chemical & Pharmaceutical Bulletin

... In recent years, machine learning has been widely used in air pollution research, which is faster, more accurate, and less costly than traditional models [11,12]. Nieto et al. [13] predicted PM10 in a northern Spanish city and used a support vector machine (SVM) approach. ...

Atmospheric Ozone Concentration Prediction in Nanjing Based on LightGBM
  • Citing Article
  • July 2023

Huan jing ke xue= Huanjing kexue / [bian ji, Zhongguo ke xue yuan huan jing ke xue wei yuan hui "Huan jing ke xue" bian ji wei yuan hui.]

... Binding of unfolded proteins to BiP's substrate-binding domain prompts IRE1α and PERK to dissociate and accumulate, thus initiating UPR signaling [33]. Furthermore, recent studies highlight that ER Ca2 + overload directly amplifies the IRE1α-XBP1 axis, enhancing the dimerization and stabilization of IRE1α, which in turn promotes its activation [48]. ...

ER Ca2+ overload activates the IRE1α signaling and promotes cell survival

Cell & Bioscience

... Recently, using ligand-receptor interaction analysis, our single-cell transcriptomic data show that the expression of certain receptor genes, such as Ntrk2 (encoding TrkB), is a crucial step in the mobilization of quiescent NSCs during neurogenesis. Downregulation of the TrkB pathway has been observed in old NSCs in both the subventricular zone (SVZ) and DG [7]. Therefore, deficiency of the BDNF-TrkB cascade could be a causative factor for the age-induced adult neurogenesis reduction in both neurogenic niches. ...

Restoring Carboxypeptidase E Rescues BDNF Maturation and Neurogenesis in Aged Brains

Life Medicine

... The vertical stratification effect on insect herbivores has been well-researched in tropical forests and large differences have been recorded in herbivore richness, assemblage and distribution between the canopy and understory (Ashton et al., 2016;Brehm, 2007;Graça et al., 2017;Grimbacher & Stork, 2007;Yang et al., 2018). The general pattern in tropical forests seems to show a reduction in insect herbivore defoliation in the sun canopy compared with the shade canopy, and higher herbivory in mature upper canopy than young leaves in understory (Basset, 1991;Lowman, 1992;Zhang et al., 2023). However, knowledge about the spatio-temporal pattern of insect herbivores in deciduous forests in relation to heterogeneity in leaf quality is lacking (Thomas et al., 2010;Ulyshen, 2011;Yang, 2014) and this knowledge gap limits our understanding of factors shaping biodiversity in temperate forest ecosystems. ...

Canopy height, rather than neighborhood effects, shapes leaf herbivory in a tropical rainforest

... U) and BmGDH (3836.5 U), we modulated the cell numbers in bio-reductions. As to the reaction scale, since the industrial route of chiral alcohol production requires at least a substrate concentration greater than 100 g/L [9,30], we used 100 g/L COBE as substrates in both cell-coupled and co-expression systems. As shown in Fig. 5, the co-expression system can fully transform all the COBE within 1 h, whereas the cell-coupled system needs a twice longer time about 2.5 h to achieve the same conversion. ...

Enhancing the Activity of an Alcohol Dehydrogenase by Using “Aromatic Residue Scanning” at Potential Plasticity Sites

... Meanwhile, these inflammatory mediators can reduce the expression of tight junction proteins such as occulin and claudin-5, destroy the integrity of blood-brain barrier, and enter the brain to activate adaptive immune cells, leading to brain immune instability (31). In animal experiments, injecting LPS into the abdominal cavity of mice can lead to learning and memory impairment by increasing the permeability of the blood-brain barrier, and the permeability of the blood-brain barrier will recover after rebuilding the balance of gut microbiota (32). It has been reported that after oral supplementation of intestinal prebiotics, the number of probiotics such as lactobacillus and bifidobacterium in the intestine of PND mice increased, the level of inflammatory factors in the hippocampus decreased, and the cognitive function improved (33). ...

A postpartum enriched environment rescues impaired cognition and oxidative markers in aged mice with gestational inflammation

... GPX4 is a transcriptional target of Nrf2, so the Nrf2 signaling pathway will directly or indirectly affect the activity of GPX4 (Dodson et al. 2019). Studies focused on the CDGSH ironsulfur domain 2 (CISD2), a member of the iron-sulfur cluster protein family, suggested that overexpression of CISD2 protected the antioxidant system from IS injury by activating the Nrf2/HO-1 signaling pathway in mice (Hu et al. 2023). Salvia miltiorrhiza polysaccharide 1 (SMP1) protected PC12 cells from OGD/R-induced ferroptosis and LPO by activating the Nrf2/HO-1 pathway . ...

Upregulation of CDGSH iron sulfur domain 2 attenuates cerebral ischemia/reperfusion injury

Neural Regeneration Research