Ying Han’s research while affiliated with Air Force Engineering University and other places

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Publications (211)


Characterization of the metabolic pathways and hepatic macrophage subsets in mouse models of MASH
  • Preprint
  • File available

November 2024

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2 Reads

Erzhuo Xia

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Miao Zhang

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Chongxiao Li

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Jingbo Wang

Background Metabolic dysfunction-associated steatohepatitis (MASH), a more severe subtype of Metabolic dysfunction-associated steatotic liver disease (MASLD), can lead to cirrhosis and hepatocellular carcinoma. Monocyte-derived macrophages (MDMs) play a central role in NASH. Single-cell and spatial transcriptomic technologies have revealed that MDMs react to niche-specific and inflammatory signals to differentiate into Monocyte-derived Kupffer cells (MoKCs) or hepatic lipid-associated macrophages (LAMs)/CCR2 ⁺ lipid-associated macrophages (C-LAMs). However, we still lack further descriptions of specific subsets of hepatic macrophages in different MASH models. Methods Two MASH models were established by either giving a methionine-choline-deficient (MCD) diet for 4 weeks or a high-fat‒fructose‒cholesterol (HFFC) diet for 16 weeks. Liver tissues were collected for pathological analyses with hematoxylin and eosin, Oil Red O and F4/80 staining. The expression of lipid metabolism enzymes and inflammatory cytokines were detected using quantitative reverse transcription-polymerase chain reaction (RT‒qPCR). Flow cytometry was utilized to analyze the composition of isolated hepatic macrophages. Results Our study revealed that after a HFFC diet or MCD diet feeding, two MASH models presented opposite changes in the FFA synthesis pathway. The MCD and HFFC diets induce the same alternation in the composition of hepatic macrophages characterized by a decrease in Embryo-derived Kupffer cells (EmKCs) and a concomitant increase in MDMs. However, the composition of the KC pool differed between MCD- and HFFC-fed mice. The MCD diet induced a greater loss of EmKCs, accompanied by more recruited monocytes. HFFC-fed mice contain more MoKCs than MCD-fed mice, whereas MCD-fed mice have more C-LAMs and LAMs than HFFC-fed mice. Conclusions MCD- and HFFC-fed mice have a different composition of KC pool

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Single cell RNA sequence data underscore the expansion of activated CD8⁺ T cell clusters in TG Aire−/− mice. A) Merged t‐SNE plot of single cell RNA sequence data of hepatic Cd3d⁺Klra1⁻ T cells from TG, Aire−/−, TG Aire+/− and TG Aire−/− mice. The number in the top left corner indicates the number of cells. B) Combined violin plots of specific marker genes across 12 T cell clusters. C) Split t‐SNE plots of (A). The number in the bottom left corner indicates the number of cells. D) Relative frequency distribution of each T cell cluster in the livers from TG, Aire−/−, TG Aire+/− and TG Aire−/− mice. dnTGFβRII is abbreviated as TG.
Single T cell receptor repertoire analysis and specific clonal expansion of Pdcd1⁺CD8⁺ T clusters. A) Top 10 TCR clonotypes distributed on merged t‐SNE plot of hepatic T cells in TG, Aire−/−, TG Aire+/− and TG Aire−/− mice. B) Split t‐SNE plots from (A). C) Circular ring plot displays the frequency of top 10 TCR clones in total T cell clones. D) The relative frequency of top 10 TCR clones. E) Heatmap of shared TCR clonotypes between CD8⁺ T cells clusters; shared cell numbers are marked in the grids. The combinations of V and J genes in F) TCRα/γ chains and G) TCRβ/𝜹 chains. H) Volcano plot comparing differentially expressed genes between Pdcd1 positive and negative CD8⁺ T cells. I) GSVA analysis displays the top 20 differentially enriched pathways between Pdcd1 positive and negative CD8⁺ T cells. A non‐parameteric Wilcoxon rank sum test was performed to assess the statistical significance in (H).
Enhanced PD‐1⁺CD8⁺ T cell response in the livers of dnTGFβRII Aire−/‐ mice. A) Merged t‐SNE plots of CD8⁺ T cells from 3 representative liver samples of Aire−/−, TG Aire+/− and TG Aire−/− mice. B) Expression distributions of PD‐1, CD62L, CD69, and CD44 on merged t‐SNE plots of CD8⁺ T cells. C) Split t‐SNE plots of (A). D) Immunohistochemistry CD4, CD8, and PD‐1 in the livers of Aire−/−, TG Aire+/− and TG Aire−/− mice. White arrows reflect PD‐1⁺CD8⁺ T cells. Scale bar in the upper row, 200 µm; scale bars in the bottom row, 20 µm. All results are reported from one representative experiment from at least three independent repeats.
Functional activation of PD‐1⁺CD8⁺ T cells in the livers of dnTGFβRII Aire−/− mice. A) Representative flow cytometry results of PD‐1 and IFNγ expression by the gated population of CD3⁺CD8⁺ cells in the livers of Aire−/−, TG Aire+/− and TG Aire−/− mice. Statistical analysis of the percentage of B) PD‐1⁺CD8⁺ T cells and C) PD‐1⁺CD8⁺IFNγ⁺ T cells in the livers of Aire−/− (n = 8 or 7), TG Aire+/− (n = 11 or 6) and TG Aire−/− mice (n = 14 or 4). D) Serum levels of IFNγ in Aire−/− (n = 16), TG Aire+/− (n = 17) and TG Aire−/− (n = 16) mice. E) Statistical analysis of the MFI of granzyme B in CD8⁺ T cells from Aire−/− (n = 7), TG Aire+/− (n = 6) and TG Aire−/− (n = 4) mice. F) Statistical analysis of the MFI of granzyme B in PD‐1⁺CD8⁺ and PD‐1⁻CD8⁺ T cells of TG Aire−/− (n = 4) mice. G) Giemsa staining results of PD‐1⁺CD8⁺ and PD‐1⁻CD8⁺ T cells. Scale bar in the upper row, 250 µm; scale bar in the bottom row, 50 µm. H) Statistical analysis of the area of PD‐1⁺CD8⁺ and PD‐1⁻CD8⁺ T cells in one 200 × field. I) Statistical analysis of the expression level of Ki‐67 in PD‐1⁺CD8⁺ and PD‐1⁻CD8⁺ T cells from livers of TG Aire−/− mice (n = 5) by flow cytometry. J) Statistical analysis of the cytotoxicity of 1 × 10⁵ PD‐1⁺CD8⁺ or PD‐1⁻CD8⁺ T cells following co‐culture with 1 × 10⁴ isolated primary hepatocytes from wild‐type mice in vitro, detected the levels of lactate dehydrogenase (LDH) in supernatants and calculated the cytotoxicity percentages after 20 h. Data are means ± SD. *p < 0.05; **p < 0.01; ***p < 0.001, by one‐way ANOVA (B to E) or Student's t test (F, and H to J). All results are reported from one representative experiment from at least three independent repeats.
PD‐1⁺CD8⁺ T cell is the pathogenic cells of dnTGFβRII Aire−/‐ mice. A) Schematic diagram shows the PD‐1⁺ cells depletion assay. 1‐week‐old TG Aire−/‐ mice were intravenously injected with 5 × 10⁵ anti‐PD‐1 CAR‐T cells and monitored the diseases. B) Survival curves of TG Aire−/− mice treated in vivo with (n = 11) or without (n = 9) anti‐PD‐1 CAR‐T cells. C) Liver histology results of anti‐PD‐1 CAR‐T cells treated (5‐week‐old) or untreated (2‐week‐old) TG Aire−/− mice. Scale bar in the upper row, 400 µm; scale bar in the bottom row, 100 µm. All results are reported from one representative experiment from at least three independent repeats.

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PD‐1CD8 T Cell‐Mediated Hepatocyte Pyroptosis Promotes Progression of Murine Autoimmune Liver Disease

November 2024

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38 Reads

The specific mechanisms underlying effector pathways in autoimmune liver disease remain enigmatic and therefore constructing appropriate murine models to investigate disease pathogenesis becomes critical. A spontaneous severe murine model of autoimmune liver disease has been previously established in dnTGFβRII Aire−/− mice, exhibiting disease phenotypes that resemble both human primary biliary cholangitis (PBC) and autoimmune hepatitis (AIH). The data suggests that auto‐reactive liver‐specific CD8⁺ T cells are the primary pathogenic cells in liver injury. In this study, these data are advanced through the use of both single‐cell sequencing and extensive in vitro analysis. The results identify a specific expanded pathogenic subset of PD‐1⁺CD8⁺ T cells in the liver, exhibiting strong functional activity and cytotoxicity against target cells. Depletion of PD‐1⁺CD8⁺ T cells using CAR‐T cells effectively alleviates the disease. GSDMD‐mediated pyroptosis is found to be aberrantly activated in the livers of model mice, and treatment with a GSDMD‐specific inhibitor significantly inhibits disease progression. In vitro experiments reveal that PD‐1⁺CD8⁺ T cells can induce the pyroptosis of hepatocytes through elevated production of granzyme B and perforin‐1. These results provide a novel explanation for the cytotoxic activity of pathogenic liver PD‐1⁺CD8⁺ T cells in autoimmune liver diseases and offer potential therapeutic targets.



IPSCs can be derived from fibroblasts in human skin tissues, kidney epithelial cells in the urine, cytoblasts in the blood, keratinocytes in hair, etc. The reprogramming process requires the addition of four classical transcription factors: Oct3/4, Sox2, c-Myc, and Klf4. IPSCs have the ability to differentiate into various tissue cells, including hepatocytes, cardiac cells, vascular cells and neural cells
The culture protocol for differentiation of iPSCs into HLCs takes 25 days and is divided into three stages: definitive endoderm differentiation, hepatic progenitor induction, and hepatocyte differentiation. The gradual maturation of HLCs is induced by adding different transcription factors at each stage
The culture process of iPSCs to LOs. HLCs proliferate and differentiate into a specific mature state in the 2D level (either a single cell type or a co-culture system). Then, the cells are collected and embedded in a matrix or scaffold material to form a 3D structure and maintain continuous growth
IPSCs can differentiate into HLCs and organoids, which can be applied in the fields of disease modeling, drug toxicity screening and graft infusion. They have been extensively studied in disease animal models, including DILI, HBV/HCV, NAFLD and NASH, providing a basis for the formulation of individualized treatment strategies
Hepatocyte-like cells and liver organoids: the application of iPSCs and their derivants for treating liver diseases

September 2024

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25 Reads

Liver diseases have become a great burden to human health because of their high morbidity and mortality rates. Orthotopic liver transplantation, which has always been considered the primary treatment for end-stage liver disease, has limitations in clinical practice. The development of cell therapy, especially induced pluripotent stem cells (iPSCs), holds promise in treating liver diseases. It has been reported that hepatocyte-like cells and liver organoids derived from iPSCs can be applied to establish disease models, test drug hepatotoxicity or directly perform specific functions as grafts. In this article, we systematically reviewed two differentiated derivants of iPSCs and show the prospective application of differentiated products in order to provide an experimental and theoretical basis for clinical treatment.




The Mechanism of GC treatment for DILI. The presentation of reactive drug metabolites as antigens that activate adaptive immune responses by activating cytotoxic CD8 + T cells. Reactive drug metabolites can cause mitochondrial dysfunction, endoplasmic reticulum stress, and DNA damage through oxidative stress; and lead to cell necrosis and apoptosis. Drug metabolites can also inhibit bile salt export pump. GCs can induce apoptosis in T lymphocytes, neutrophils, basophils, and eosinophils to reduce inflammation. GCs can inhibit the antigen presentation process by inhibiting the maturation of dendritic cells, thereby reducing the activation of CD8 + T cells. GCs can directly inhibit the inflammatory response. Abbreviations: GCs, Glucocorticoids; ROS, reactive oxygen species. (We used Figdraw (www.figdraw.com) to prepare the figure)
Glucocorticoid efficacy and treatment strategies for drug-induced liver injury: a literature review

Molecular Biology Reports

Drug-induced liver injury (DILI) is an adverse reaction to drugs and their metabolites. The activation of adaptive immune and inflammatory responses plays an important role in the pathogenesis of DILI. Glucocorticoids (GCs) have powerful anti-inflammatory and immunosuppressive effects and have been used to treat a variety of immune-mediated liver diseases. Due to the important role of the immune system in DILI, GCs are widely used in the clinical treatment of DILI; however, whether they are beneficial to patients remains controversial. There is no uniform standard for the timing, dosage, and population selection of GCs, which mainly depend on the clinician’s experience. Therefore, elucidating whether GCs are beneficial for patients with DILI is an urgent clinical problem. Our review summarizes the recent literature and discusses the clinical efficacy, applicable population, application timing, and efficacy of GCs in special types of DILI, providing a reference for the clinical application of GCs.


Chinese guidelines on the management of ascites in cirrhosis : Chinese Society of Hepatology, Chinese Medical Association

July 2024

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8 Reads

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1 Citation

Hepatology International

In 2023, Chinese Society of Hepatology of Chinese Medical Association convened a panel of experts to update the Chinese guidelines on the management of ascites and associated complications in cirrhosis which was launched in 2017 and renamed this guidelines as “Guidelines on the Management of Ascites in Cirrhosis.” This comprehensive resource offers essential recommendations for the diagnosis and treatment of cirrhotic ascites, spontaneous bacterial peritonitis, and hepatorenal syndrome.



Flow diagram of patients enrollment.
The predictive value of sTREM-1 for the severity of illness and 28-day mortality in COVID-19 patients. (A) Comparison of sTREM-1 levels among different severity groups of COVID-19 patients. (B) Comparison of sTREM-1 levels between the 28-day survival and death groups. (C) Comparison of sTREM-1 levels between the 28-day survival and death groups in critically ill patients. Data are displayed as a median with interquartile range (IQR) and were compared using the Mann–Whitney U-test. Multiple samples were compared using the non-parametric Kruskal–Wallis test. (D) Receiver Operating Characteristic (ROC) curve of sTREM-1 for predicting severity in COVID-19 patients, with an area under the ROC curve (AUC) of 0.762 (95% confidence interval [CI]: 0.669–0.855). (E) ROC curve of sTREM-1 for predicting 28-day mortality in COVID-19 patients, with an area under the ROC curve (AUC) of 0.805 (95% [CI]: 0.697–0.914). (F) Kaplan-Meier curve for patients divided into two groups based on the median sTREM-1 level: above-median group and below-median group, for 28-day survival. A p-value <0.05 was considered significant.
Heatmap depicting the correlation between sTREM-1 and age, Vital signs, and laboratory inflammatory markers. (A) The values are presented as Spearman‘s correlation coefficient (r) for a sample of 115 runners regarding sTREM-1. The colormap ranges from 1 to −1, with blue indicating the highest value and red indicating the lowest value. (B) The Heatmap of corresponding p-values. The colormap ranges from 0 to 1, with blue representing the largest value and white representing the smallest value. White cells without numerical values indicate that the p-value is smaller than 0.00001, indicating a highly significant correlation.
ROC curves of sTREM-1 and main clinical parameters for severity and prognosis of COVID-19 patients. (A) Predicting severity of COVID-19 patients. The area under the curve (AUC) for sTREM-1 was 0.762 (95% confidence interval [CI]: 0.669–0.855); PCT, AUC was 0.714 (95% CI: 0.607–0.822); CRP, 0.682 (95% CI: 0.577–0.787); HGB, AUC was 0.509 (95% CI: 0.395–0.623); Albumin, 0.673 (95% CI: 0.562–0.784); D-dimer, AUC was 0.654 (95% CI: 0.532–0.776); eGFR, AUC was 0.606 (95% CI: 0.496–0.717); LCR, AUC was 0.691 (95% CI: 0.585–0.796); CAR, AUC was 0.689 (95% CI: 0.584–0.793). (B) Predicting prognosis of COVID-19 patients. sTREM-1, AUC 0.805 (95% CI: 0.697–0.914); PCT, AUC 0.710 (95% CI: 0.565–0.855); CRP, AUC 0.821 (95% CI: 0.719–0.924); HGB, AUC 0.665 (95% CI: 0.515–0.814); Albumin, AUC 0.721 (95% CI: 0.575–0.867); D-dimer, AUC 0.687 (95% CI: 0.529–0.846); eGFR, AUC 0.685 (95% CI: 0.545–0.824); LCR, AUC 0.801 (95% CI: 0.691–0.912); CAR, AUC 0.829 (95% CI: 0.732–0.927).
ROC curves for the combined model for the prognosis of COVID-19 patients. Combined model: sTREM-1, CAR, HGB and D-dimer; AUC 0.919 (95% CI: 0.857–0.981).
sTREM-1 as a Predictive Biomarker for Disease Severity and Prognosis in COVID-19 Patients

June 2024

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22 Reads

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2 Citations

Background Research on biomarkers associated with the severity and adverse prognosis of COVID-19 can be beneficial for improving patient outcomes. However, there is limited research on the role of soluble TREM-1 (sTREM-1) in predicting the severity and prognosis of COVID-19 patients. Methods A total of 115 COVID-19 patients admitted to the emergency department of Beijing Youan Hospital from February to May 2023 were included in the study. Demographic information, laboratory measurements, and blood samples for sTREM-1 levels were collected upon admission. Results Our study found that sTREM-1 levels in the plasma of COVID-19 patients increased with the severity of the disease (moderate vs mild, p=0.0013; severe vs moderate, p=0.0195). sTREM-1 had good predictive value for disease severity and 28-day mortality (area under the ROC curve was 0.762 and 0.805, respectively). sTREM-1 also exhibited significant correlations with age, body temperature, respiratory rate, PaO2/FiO2, PCT, CRP, and CAR. Ultimately, through multivariate logistic regression analysis, we determined that sTREM-1 (OR 1.008, 95% CI: 1.002–1.013, p=0.005), HGB (OR 0.966, 95% CI: 0.935–0.998, p=0.036), D-dimer (OR 1.001, 95% CI: 1.000–1.001, p=0.009), and CAR (OR 1.761, 95% CI: 1.154–2.688, p=0.009) were independent predictors of 28-day mortality in COVID-19 patients. The combination of these four markers yielded a strong predictive value for 28-day mortality in COVID-19 cases with an AUC of 0.919 (95% CI: 0.857 −0.981). Conclusion sTREM-1 demonstrated good predictive value for disease severity and 28-day mortality, serving as an independent prognostic factor for adverse patient outcomes. In the future, we anticipate conducting large-scale multicenter studies to validate our research findings.


Citations (55)


... Several inflammatory markers, such as C-reactive protein (CRP), interleukin-6 (IL-6), neutrophil-to-lymphocyte ratio (NLR), and ferritin, have been identified as predictors of COVID-19 severity [13,14]. Combining these laboratory parameters into inflammatory scores has shown promise in enhancing the predictive accuracy for disease outcomes [15]. Additionally, established indices like the systemic inflammatory index (SII), the C-reactive protein-to-albumin ratio (CAR), the lymphocyte-to-C-reactive protein ratio (LCR), and the prognostic nutritional index (PNI) have been utilized to assess inflammation and prognosis in various diseases, including COVID-19 [16][17][18]. ...

Reference:

Evaluation of Inflammatory Status in COVID-19 Patients with Chronic Kidney Disease: A Comparative Analysis Based on Creatinine Clearance Levels
sTREM-1 as a Predictive Biomarker for Disease Severity and Prognosis in COVID-19 Patients

... the combination of laboratory inflammatory markers with clinical prediction scores is a future research trend. it has the potential to further enhance the predictive value for disease clinical outcomes [74]. ...

Presepsin as a prognostic biomarker in COVID-19 patients: combining clinical scoring systems and laboratory inflammatory markers for outcome prediction

Virology Journal

... Given the challenges associated with stem cell transplantation, such as immune rejection and tumorigenicity, EVs derived from stem cells offer a safer and possibly more efficacious option [100,101]. The use of EVs could circumvent these issues, providing a means to deliver the regenerative benefits of stem cells without the associated risks [101,102]. ...

Native and engineered extracellular vesicles: novel tools for treating liver disease
  • Citing Article
  • March 2024

Journal of Materials Chemistry B

... The prevalence and relevance of this disorder in the PBC context have been only recently systematically investigated [15]. Sarcopenia has been highlighted as an independent risk factor for adverse clinical events, especially in PBC-ACLD patients [15]. ...

Prevalence and effect on prognosis of sarcopenia in patients with primary biliary cholangitis

... This includes microwave ablation, laser-induced thermal therapy and high intensity focused ultrasound among other popular ones like radiofrequency ablation (RFA). In many cases, long-term outcomes in patients with hepatocellular carcinoma (HCC) may be achieved through the use of thermal ablation which can have a comparable efficacy with surgical resection according to several studies such as study of Zhang et al. (2024) and Kim et al. (2024). However, these ablative procedures are highly dependent on experience of an operator necessitating substantial practice to enhance proficiency. ...

Long-term survival analysis of ultrasound-guided percutaneous microwave ablation for hepatocellular carcinoma conforming to the Milan criteria: primary versus recurrent HCC

... 23 Recent studies have reported an average eradication rate of 80-90% in the bismuth quadruple therapy group. 24,25 In our previous study, the eradication rate of a 14-day quadruple rescue therapy based on amoxicillin and furazolidone was only 80.8% empirically. 26 In cases of amoxicillin allergy, the eradication rate is even lower. ...

Meta-analysis of Helicobacter pylori eradication therapy using vonoprazan as an acid suppressor compared with bismuth quadruple therapy
  • Citing Article
  • March 2024

Helicobacter

... Patients with PBC often have high total cholesterol (TC), triglyceride (TG), highdensity lipoprotein cholesterol (HDL-C), and low-density lipoprotein cholesterol (LDL-C) (7,8). Dyslipidemia is associated with an increased risk of poor outcomes (8, 9) and contribute to the development of PBC. The 5-and 10-year poor clinical outcome-free survival rates were 0.96 and 0.89 in low-TC patients, and 0.72 and 0.39 in high-TC patients (9). ...

Hypercholesterolemia Is Associated With Dysregulation of Lipid Metabolism and Poor Prognosis in Primary Biliary Cholangitis
  • Citing Article
  • February 2024

Clinical Gastroenterology and Hepatology

... The intestinal microbiota consists of approximately 4 × 10 13 commensal bacteria, also known as the "human second genome" [12]. Recently, with the emergence of the "leaky gut" hypothesis and the "PSC microbiome" hypothesis, the gut microbiota has attracted increasing attention as a potential pathogenic factor for PSC [13][14][15]. Not only that, but changes in blood lipids have been found to be closely related to the abundance of the gut microbiota [16][17][18][19]. ...

Causal associations between gut microbiota and Cholestatic liver diseases: a Mendelian randomization study

... Blood cell count-derived inflammatory markers (BcDiMs): NlR, MlR, PlR, lcR, siRi and systemic inflammation index (sii) have been found to be significantly associated with systemic inflammation [16][17][18][19]. they have also been reported for predicting the prognosis of cOViD-19 patients [20][21][22][23][24]. Furthermore, studies have indicated a correlation between c-reactive protein-to-albumin ratio (caR) and clinical outcomes in cOViD-19 patients [25][26][27]. however, there is currently a lack of research that provides a comprehensive comparison of these indicators for predicting the severity and prognosis of cOViD -19 patients. to address this question, we conducted a retrospective cohort study at an affiliated infectious disease hospital at a university. ...

During the Omicron Pandemic Wave, the Severe Systemic Inflammatory Status of COVID-19 Indicated a Higher Risk of In-Hospital Mortality and Mediated the Clinical Efficacy of Corticosteroids

... The following parameters were used and were informed by an extensive review of taVNS studies [40], [48], [49], [50], [51], [52]: continuous pulse wave, frequency of 20 Hz, current intensity ≤ 20 mA. In previous taVNS studies, a reasonable number of studies have employed a 30-minute stimulation duration [53], [54], [55], [56]. Therefore, the stimulation time was set at 30 minutes in this study, which includes 20 cycles, where each cycle involved 30 seconds of electrical stimulation and a 1-minute rest period ( Fig. 1(b)). ...

Transcutaneous Auricular Vagal Nerve Stimulation Is Effective for the Treatment of Functional Dyspepsia: A Multicenter, Randomized Controlled Study

The American Journal of Gastroenterology