Yi-Ru Li’s research while affiliated with Academia Sinica and other places

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Publications (7)


Supplementary material
  • Data
  • File available

June 2020

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6 Reads

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Wei Bin-Tay

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Yi-Ru Li

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Rik Brydson
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Travel Time Prediction Based on Missing Data Compensation: Proceeding of the Second International Conference on Smart Vehicular Technology, Transportation, Communication and Applications, October 25-28, 2018 Mount Emei, China, Part 2

January 2019

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16 Reads

Smart Innovation

Data Missing is a common issue in traffic data processing. This study proposes pretime interpolation and realtime extrapolation for missed data compensation. Herein, cubic spline curve interpolation, linear interpolation, and near value method are applied for pretime operation. Mean value method, Fourier transform method, α-β-γ filter with mean value and α-β-γ filter with Fourier transform method are involved for realtime operation. According to the experiments, the practices result the linear interpolation is shown of the best way for pretime works. About realtime extrapolation, the proposed four methods present without significant difference. The paper finally conducts travel time prediction via the compensated database revealing good performance.



Figure 1. Gal-1 deficiency promotes VSMC proliferation and migration. (A) WT and Gal-KO VSMCs were subjected to serum deprivation for 24 h (baseline), followed by stimulation with indicated concentrations of serum or PDGF in culture for 48 h. The cell numbers were then determined. Data shown are mean ± SE of 3 independent experiments. *P < 0.05 vs 1%FBS; + P < 0.05 vs WT VSMCs. Serum starved WT and Gal-KO VSMCs were subjected to PDGF (10 ng/ml) stimulation and the migration responses were assessed by wound healing assay (B) or Boyden chamber assay (C). (B) The representative photos showing VSMC migration to wound area at 8 h post stimulation with or without PDGF. The quantitative data are mean ± SE of 3 independent experiments. *P < 0.05 vs without PDGF; + P < 0.05 vs WT VSMCs. (C) The representative photos showing migrated VSMCs at 5 h post stimulation with or without PDGF. The quantitative data are mean ± SE of 3-independent experiments. *P < 0.05 vs without PDGF; + P < 0.05 vs WT VSMCs.
Figure 3. Gal-1 deficiency attenuates VSMC adhesion, spreading and focal adhesion formation. (A) Serum starved WT and Gal-1-KO VSMCs were plated on indicated matrix-coated 96-well plate for 1 h in culture. Nonattached cells were washed out and attached cells were stained with crystal violet and absorbance at 560 nm determined. Data are mean ± SE of 4 independent experiments. *P < 0.05 vs WT cells. (B) Serumstarved WT and Gal-1-KO VSMCs were applied to SPR sensing fibronectin-coated chip cell and the adhesion dynamics recorded for a period of 2 h. The time course plots showing the changes of SPR signal (dA) after normalization with the plateau dA in WT and Gal-1KO VSMCs. The values of rate constant shown are mean ± SE of 4 independent experiments. *P < 0.05 vs WT VSMCs. (C) Serum starved WT and Gal-1-KO VSMCs were plated on fibronectin-coated cover slips for 2 h. Cells were then fixed and stained with rhodamineconjugated phalloidin. Sizes of spreading WT& Gal-1-KO VSMCs were quantified. (D) Serum-stared WT and Gal-1-KO VSMCs were plated on fibronectin-coated plates for indicated times. Cells were then harvested and FAK phosphorylation was examined by Western blot analysis. The quantitative data were mean ± SE of 3 independent experiments. *P < 0.05 vs WT cells. Uncropped images of immunoblots are shown in Supplementary Fig. 4A. (E) FA formation was examined by confocal immunofluorescence using antibody against vinculin. The FA numbers in WT and Gal-1-KO cells were quantified from 50~70 cells in each group compiled from 3 independent experiments. *P < 0.05 vs WT cells.
Figure 6. Gal-1 impacts the adhesion force between VSMCs and fibronectin. Fibronectin-coated AFM probe repeatedly approached and retracted from the surfaces of WT or Gal-1-KO VSMCs at 900 nm/s piezo ramp speed and 3000 nm ramp size. Data from 10-15 different contact sites/cell were collected and analyzed. (A) The representative force curves of VSMC-fibronectin interaction. Arrows indicate the events of adhesion rupture. (B) The numbers of rupture events during retraction and the adhesion forces detected in WT and Gal-1-KO VSMCs were determined. The numbers of cells for analysis in both genotypes are indicated in parentheses. (C) Gal-1-KO VSMCs were pretreated without (control) or with 10 µg/ml CSGal-1 in the absence or presence of 100 mM lactose in culture for 30 min prior to AFM analysis. The numbers of cells in various groups are indicated in parentheses.
Figure 7. Gal-1 deficiency promotes neointimal formation in mice. Both WT (n = 11) and Gal-KO (n = 10) mice were subjected to carotid artery ligation for 4 weeks. (A) Gal-1 expression in arterial tissues of WT and gal-1-KO mice were examined by immunohistochemistry. (B) The representative Verhoff 's stains of vascular sections from WT and Gal-KO mice. (C) The quantitative results of the intimal area and intima-media ratio at a distance of 400 μm from the ligation site. *P < 0.05 vs WT group. I: intima; M: media.
Gal-1 impacts VSMC proliferation and migration dependent on glycan-binding activity. (A) Serum-starved rat VSMCs without (pGC-YFP) or with WT Gal-1 or Gal-1-W69G overexpression as indicated were treated with PDGF or serum as indicated for 48 h. The increases in cell numbers were determined. Data are mean ± SE of 3 independent experiments. *P < 0.05 vs 0.1% FBS; ⁺P < 0.05 vs pGC-YFP control. (B) Serum starved rat VSMC lines as described above were subjected to wound healing assay. The representative photos were taken at 24 h after stimulation with or without PDGF. Quantitative data are mean ± SE of 3 independent experiments. *P < 0.02 vs without PDGF; ⁺P < 0.05 vs pGC-YFP control. (C) Serum-starved Gal-1-KO VSMCs were treated with 1% FBS together without or with PDGF (10 ng/ml) and indicated concentrations of CSGal-1 and lactose for 48 h. Cell numbers were then determined. Data shown are mean ± SE of 3 independent experiments. *P < 0.05 vs 1%FBS; ⁺P < 0.05 vs 1%FBS/ PDGF; #P < 0.05 vs 1%FBS/PDGF/CSGal-1(5 µg/ml). (D) Serum-starved Gal-1-KO VSMCs were subjected to Boyden chamber migration assay with PDGF as chemoattractant. VSMCs were placed on upper chamber in the absence or presence of indicated concentrations of recombinant CSGal-1 and lactose. The quantitative data are mean ± SE of 3 independent experiments. *P < 0.05 vs without PDGF; ⁺P < 0.05 vs PDGF treatment alone; #P < 0.05 vs PDGF/CSGal-1(2 µg/ml).

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Galectin-1 Restricts Vascular Smooth Muscle Cell Motility Via Modulating Adhesion Force and Focal Adhesion Dynamics

July 2018

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218 Reads

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33 Citations

Vascular smooth muscle cell (VSMC) migration play a key role in the development of intimal hyperplasia and atherosclerosis. Galectin-1 (Gal-1) is a redox-sensitive β-galactoside-binding lectin expressed in VSMCs with intracellular and extracellular localizations. Here we show that VSMCs deficient in Gal-1 (Gal-1-KO) exhibited greater motility than wild type (WT) cells. Likewise, Gal-1-KO-VSMC migration was inhibited by a redox-insensitive but activity-preserved Gal-1 (CSGal-1) in a glycan-dependent manner. Gal-1-KO-VSMCs adhered slower than WT cells on fibronectin. Cell spreading and focal adhesion (FA) formation examined by phalloidin and vinculin staining were less in Gal-1-KO-VSMCs. Concomitantly, FA kinase (FAK) phosphorylation was induced to a lower extent in Gal-1-KO cells. Analysis of FA dynamics by nocodazole washout assay demonstrated that FA disassembly, correlated with FAK de-phosphorylation, was faster in Gal-1-KO-VSMCs. Surface plasmon resonance assay demonstrated that CSGal-1 interacted with α5β1integrin and fibronectin in a glycan-dependent manner. Chemical crosslinking experiment and atomic force microscopy further revealed the involvement of extracellular Gal-1 in strengthening VSMC-fibronectin interaction. In vivo experiment showed that carotid ligation-induced neointimal hyperplasia was more severe in Gal-1-KO mice than WT counterparts. Collectively, these data disclose that Gal-1 restricts VSMC migration by modulating cell-matrix interaction and focal adhesion turnover, which limits neointimal formation post vascular injury.


Fabrication and applications of ultraflexible nanostructures using dielectric heating-assisted nanoimprint on PVC films

November 2017

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54 Reads

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2 Citations

Current Applied Physics

We developed dielectric heating-assisted nanoimprint method for rapid fabrication of ultraflexible nanostructures. Using spin-coating polyvinyl-chloride (PVC) film on the glass slide, the dielectric heating on PVC film helped the pattern transfer from the mold to PVC film in few seconds. Various kinds of nanostructures were successfully made on PVC films with about 20-μm thickness. We demonstrated the applications of ultraflexible metallic nanostructures for bending measurement using surface plasmon resonance (SPR) and surface enhanced Raman scattering (SERS) on the curved surfaces. For measuring bending angles using SPR on capped nanowire arrays, the minimum detection angle was 2.4 × 10⁻³ degree under 0.02 nm wavelength resolution. For SERS measurement, the nanorod arrays on a curved substrate can increase SERS signals for two times as compared to planar SERS substrate.


OM images (first row), AFM tomography images (second row) and line profiles (third row), and EFM images (fourth row) of the PPE LiNbO3 substrates with the annealing time of (a)0 hr; (b)1 hr; (c)4 hrs; (d)9 hrs; (e)16 hrs.
SEM images (first and second row), AFM tomography images (third row) and line profiles (fourth row) of photoreduced silver nanoparticles on the PPE LiNbO3 substrates treated with the annealing time of (a)0 hr; (b)1 hr; (c)4 hrs; (d)9 hrs; (e)16 hrs.
(a-e) Simulated spontaneous polarization distribution and vectorial electrostatic filed distribution of the PPE LiNbO3 substrates treated with the annealing time of 0 hr, 1 hr, 4 hrs, 9 hrs, and 16 hrs. The normalized distribution of (f) the in-plane component (Ex), (g) the out-of-plane component (Ez), and (h) the field value of the electrostatic field at the depth 10nm below the + z surface.
(a) Transmission spectra of the SERS substrates treated with the annealing time of 0 hr, 1 hr, 4 hrs, 9 hrs, and 16 hrs; (b) dependence of LSPR wavelength on the square root of the annealing time.
(a) R6G dye SERS spectra on the plain LiNbO3 substrates and the SERS substrates treated with the annealing time of 0 hr, 1 hr, 4 hrs, 9 hrs, and 16 hrs; (b) dependence of Raman intensity on the square root of the annealing time.
Electrostatic-field-tunable ferroelectric template for photoreduction of silver nanostructures applied in Raman scattering enhancement

July 2017

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182 Reads

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7 Citations

We present an electrostatic-field-tunable ferroelectric template to produce photoreduced silver nanostructures for Raman scattering enhancement. The intensity and distribution of the surface electrostatic field in the ferroelectric template determine the morphology of the photoreduced silver nanostructures and thus the degree of the Raman signal enhancement. The surface electrostatic field is produced by periodically proton-exchanged (PPE) regions in LiNbO3 and is tuned by thermal annealing to obtain the favorable photoreduced silver nanostructure. The variation of surface electrostatic properties by thermal annealing is simulated using the finite element method and measured by electrostatic force microscopy. The mechanism of silver nanostructure formation affected by the electrostatic field distribution is discussed. The formed silver nanostructures are functionalized by R6G dye to enable Raman signal measurement. The proposed method is demonstrated to be effective in tuning the surface electrostatic field distribution and produces a 4.13 times higher silver nanostructure and a 2.51 times larger Raman intensity in comparison with the conventional PPE sample.

Citations (3)


... Basically, the optoelectronic properties of graphene are somewhat different from that of graphite. 55 Furthermore, the background generated by fluorescence in Raman spectra of nanocomposites is much lower compared with neat PA6. In the works of Xie et al. and Thrall et al. such a phenomenon was stated to be due to the fluorescence quenching ability of graphene. ...

Reference:

Effect of functionalized graphene on mechanical and rheological properties of melt processed polyamide 6 nanocomposites
A practical characterisation protocol for liquid-phase synthesised heterogeneous graphene
  • Citing Article
  • June 2020

Carbon

... There are some reports that gold-coated stents were associated with a considerable increase in the risk of restenosis over the first year after stenting [24]. Drawing inspiration from the roles of the galectin-1 protein (Gal-1) in anti-inflammatory responses [25] and cell-specific signaling processes [26], we developed a multifunctional surface coated with Gal-1 containing SLBs and evaluated its effectiveness both in vitro and in vivo. We utilized the murine melanoma cell line (B16-F10) as the source of membranes containing the Gal-1 protein. ...

Galectin-1 Restricts Vascular Smooth Muscle Cell Motility Via Modulating Adhesion Force and Focal Adhesion Dynamics

... In Fig. 4(b), the Raman signal's peaks of the R6G dye in the case of 0.1% appear at the wavenumbers of 1181 cm − 1 , 1314 cm − 1 , 1365 cm − 1 , 1514 cm -1 and 1661 cm − 1 , which is much higher than the other cases. The highest Raman intensity of R6G dye at 1365 cm − 1 is due to the aromatic C-C stretching of the R6G molecule [24,[47][48][49]. Note that the highest Raman signal peak of R6G dye in the case of 1% at the wavenumber of 1365 cm − 1 is enhanced 13 times than the flat LN substrate. ...

Electrostatic-field-tunable ferroelectric template for photoreduction of silver nanostructures applied in Raman scattering enhancement