Xunyou Yan’s research while affiliated with Life University and other places

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Publications (13)


The overall diagram illustrating the embedding of DNA-based natural language (DBNL) in microbes. Streptomyces ginsengnesis G7 is used as an example. The most general and up-to-date information is presented on an ID card (left), followed by potential mutations and subcultures (middle), and finally decoded using a codec algorithm, such as Wukong, as demonstrated in this work (right)
The pipeline of incorporating core information into Streptomyces through DNA data storage. The “Natural Language” information is first translated to binary information, which is then encoded into DNA sequences using an appropriate codec algorithm. Notably, random-access primers are introduced to both ends of the encoded gene sequences. The encoded DNA sequences are subsequently subjected to DNA synthesis, which involved chemical oligo synthesis and subsequent gene assembly. After being cloned into an appropriate plasmid vector, the gene is reproduced in E. coli ET12567 cells and subsequently conjugated into Streptomyces cells by conjugation. The gene is further integrated into Streptomyces genomes by recombination, and then stored in Streptomyces spores for long-term storage. To recover the information, PCR is utilized to identify the information encoded gene using primers corresponding to the flanking regions of the inserted gene that were added during information encoding. The PCR products are purified and then forwarded for sequencing. The deciphered DNA sequences are further decoded using the codec algorithm used to encode the gene
Experimental validation of DNBL embedding in Streptomyces. To imbue Streptomyces ginsengnesis G7 with a flexible context, a synthesized DNA sequence was integrated into the bacterial chromosome using the φC31 integrase vector, pIB139. The integration stability was assessed through PCR testing and repeat sequencing of four recombined mutants, demonstrating no mutational changes in subsequent generations (n = 3). This approach confirms the stability and integration fidelity of foreign DNA within the Streptomyces genome
Embedding DNA-based natural language in microbes for the benefit of future researchers
  • Article
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October 2024

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41 Reads

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Jiaquan Huang

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Xiaoyu Wang

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Zhiwei Qin

Microorganisms are valuable resources as antibiotic producers, biocontrol agents, and symbiotic agents in various ecosystems and organisms. Over the past decades, there has been a notable increase in the identification and generation of both wild-type and genetically modified microbial strains from research laboratories worldwide. However, a substantial portion of the information represented in these strains remains scattered across the scientific literature. To facilitate the work of future researchers, in this perspective article, we advocate the adoption of the DNA-based natural language (DBNL) algorithm standard and then demonstrate it using a Streptomyces species as a proof of concept. This standard enables the sophisticated genome sequencing and subsequent extraction of valuable information encoded within a particular microbial species. In addition, it allows the access of such information for the continued research and applications even if a currently cultivated microbe cannot be cultured in the future. Embracing the DBNL algorithm standard promises to enhance the efficiency and effectiveness of microbial research, paving the way for innovative solutions and discoveries in diverse fields.

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Comparative transcriptomics and bioinformatics profiling provide insights into resistance to Fusarium wilt in melon

October 2024

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11 Reads

Plant Pathology

Melon is an important cash crop grown worldwide, with China leading the world in melon acreage. Melon wilt is becoming more common as the area under melon cultivation gradually increases. Therefore, it is crucial to understand the resistance pattern of Fusarium wilt in melons. In this work, among the four test melon cultivars, YG was highly resistant to Fusarium wilt and 1455 was disease‐resistant. However, 5657 was susceptible, while 5455 was highly susceptible to the disease. We detected 71,852 differentially expressed genes in 16 combinations, including 37,382 with up‐regulation and 3470 with down‐regulation, and we investigated 11 genes associated with resistance to Fusarium wilt through bioinformatics and transcriptome analysis. We identified two differentially expressed cinnamyl alcohol dehydrogenases ( CAD ) that were down‐regulated in the susceptible melon material in contrast to the resistant variety. Nine chitinase ( CHT ) genes were differentially expressed, with four showing up‐regulation and four showing down‐regulation in the susceptible compared to the resistant melon material. The MeloCHT genes were located on chromosomes 2, 6, 8, 11 and 12, with four of them on chromosome 8. MeloCAD1 was located on chromosome 1 and MeloCAD2 on chromosome 8. The physicochemical properties of the encoded proteins were predicted by bioinformatics, including theoretical isoelectric point, instability coefficient, relative molecular mass, lipid solubility index and hydrophilicity index. The genes encode proteins with α‐helix, extended strand, random coils and β‐turns. This study provides fundamental knowledge on the transcriptome of melons and establishes a foundation for future research on the detection and application of Fusarium wilt‐resistant genes in melons.


Relationship between temperature/extraction time/liquid to solid ratio and lutein extraction yield. (a) Temperature; (b) extraction time; (c) liquid to solid ratio.
Relationship between different ethanol concentrations/ultrasonic powers and lutein extraction yields. (a) Different ethanol concentration and its corresponding OD value; (b) Different ultrasonic power treatment and its corresponding OD value.
Total lutein content in concentrated solution and content of lutein in microcapsules.
Micromorphology of all products. (a) Lutein; (b) β‐cyclodextrin; (c) Lutein microcapsules.
Effects of different external factors on the stability of lutein in a natural setting and microcapsules. (a) Temperature; (b) pH; (c) Illumination time.
Improvement in the stability and bioavailability of pumpkin lutein using β‐cyclodextrin microcapsules

February 2023

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55 Reads

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14 Citations

Growing concerns about food nutrition and food supplies have encouraged the development of effective constituents. Lutein is an important nutrient element, and its health benefits are gradually being recognized. Lutein, as a carotenoid antioxidant, can protect cells and organs from damage caused by free radicals. However, in processing, storage, and usage, lutein is unstable and often undergoes isomerization and oxidative decomposition, which limits its wide range of applications. β‐Cyclodextrin is an ideal substrate to prepare microcapsule structures, which are highly biocompatible and nontoxic. During the lutein encapsulation process, ideal β‐cyclodextrin microcapsules were used to form inclusion compounds. The results reveal that the encapsulation efficiency of the microcapsules reached 53%. Moreover, using ultrasonic‐assisted extraction can easily and efficiently purify lutein. In addition, the capability of the β‐cyclodextrin composite shell can enhance the bioactive molecules' activity and stability. Lutein‐inclusion ß‐cyclodextrin nanoparticles rationally established in a common solvent. A novel ß‐cyclodextrin microcapsule carrier was synthesized. Lutein encapsulation is an advantageous alternative to increase lutein stability.


Raveniola yangren sp. n., live. A paratype, B holotype, in situ.
Raveniola yangren sp. n., holotype female. A habitus, dorsal, B same, ventral, C labium and sternum, D spinnerets, E ocular area, F leg I. Arrow shows scopula on tibia.
Raveniola spp., female genitalia, ventral view. A, B R. yangren sp. n., holotype female, C-1 R. beelzebub, C-2 R. bellula Li & Zonstein, 2015, C-3 R. chayi Li & Zonstein, 2015, C-4 R. gracilis Li & Zonstein, 2015, C-5 R. hebeinica Zhu, F. Zhang & J. X. Zhang, 1999, C-6 R. lamia, C-7 R. montana Zonstein & Marusik, 2012, C-8 R. xizangensis (Hu & Li, 1987), C-9 R. yajiangensis Li & Zonstein, 2015, C-10 R. yangren sp. n.
Raveniola yangren sp. n., a new troglobiontic spider from Hunan, China (Araneae, Nemesiidae)

May 2022

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140 Reads

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4 Citations

Troglomorphism is rare known in Mygalomorphae. Only three troglomorphic mygalomorphs have been recorded in China: Raveniola beelzebub Lin & Li, 2020, R. lamia Yu & Zhang, 2021 and Sinopesa gollum Lin & Li, 2021. A new troglobiontic species of the genus Raveniola is described from China: R. yangren sp. n. (female) from Hunan. Photos and morphological description of the new species are given.This new species has elongated appendages and degenerated eyes in order to adapt to the cave environment. It can be distinguished by the stubby, unbranched spermathecae from other Raveniola .


Selenocosmia zhangzhengi sp. n., live. A holotype male; B paratype female.
Selenocosmia zhangzhengi sp. n., holotype male (A, C–G) and paratype female (B, H, I). A male habitus; B female habitus; C chelicerae, retrolateral view; D prolateral view; E left palp maxillae; F sternum; G, H ocular tubercle; I stridulatory lyra.
Selenocosmia zhangzhengi sp. n., holotype, male left palp A prolateral view; B ventral view; C retrolateral view.
Selenocosmia zhangzhengi sp. n., vulva, dorsal view. Genitalia variation of paratypes.
A new species of the spider genus Selenocosmia (Araneae, Theraphosidae) from Fujian, China

April 2022

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276 Reads

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1 Citation

The genus Selenocosmia Ausserer, 1871 includes 39 species. Five species were known from China. This genus has not been found in south-eastern China (Li 2020, Li et al. 2021, Yao et al. 2021, Zhao et al. 2022). A new species of the genus Selenocosmia Ausserer, 1871 is described from China: Selenocosmia zhangzhengi Lin, sp. n. from Fujian. Photos and a morphological description of the new species are given. The type specimen of the new species is deposited in the Institute of Zoology, Chinese Academy of Sciences in Beiing (IZCAS).


Haplocosmia sherwoodae sp. n., holotype male. A male habitus, dorsal; B ocular tubercle; C right palp maxillae; D sternum; E stridulatory lyra, lateral view; F same, ventral view; G chelicerae, retrolateral view; H same, prolateral view.
Haplocosmia sherwoodae sp. n., holotype, right palp bulb, rotated horizontally. A retrolateral view; B prolateral view.
Haplocosmia sherwoodae sp. n., holotype, left palp. A prolateral view; B ventral view; C retrolateral view.
A new species of the tarantula genus Haplocosmia (Araneae, Theraphosidae) from Tibet, China

March 2022

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225 Reads

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3 Citations

Background: Haplocosmia Schmidt & von Wirth, 1996 is a small genus distributed in the Himalayas that includes two species. This genus has not been found in China (Li et al. 2021, Yao et al. 2021, Zhao et al. 2022). New information: A new species of the genus Haplocosmia is described from China: Haplocosmiasherwoodae sp. n. from Tibet. Photos and a morphological description of the new species are given. The type specimen of the new species is deposited in the Institute of Zoology, Chinese Academy of Sciences in Beijing (IZCAS).


Taxonomic notes on the genus Phrynarachne from China (Araneae, Thomisidae)

February 2022

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963 Reads

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5 Citations

Four new species of the genus Phrynarachne Thorell, 1869 from China are described: P. dreepy Lin & S. Li, sp. nov. (♂♀), P. xuxiake Lin & S. Li, sp. nov. (♀), P. yunhui Lin & S. Li, sp. nov. (♀), and P. zhengzhongi Lin & S. Li, sp. nov. (♀). The unknown sexes of P. brevis Tang & S. Li, 2010 (♂), P. huangshanensis Li et al., 1985 (♀), P. lancea Tang & S. Li, 2010 (♂), and P. mammillata Song, 1990 (♀) are described for the first time. Phrynarachne sinensis Peng, Yin & Kim is treated as a nomen dubium.


Cyclocosmia ricketti, male from Mangdang Mountain: A habitus, dorsal view; B eye group; C labium and sternum, ventral view; D abdomen, posterior view; E spinnerets, ventral view.
Cyclocosmia ricketti, male from Mangdang Mountain, left palp with distorted palpal organ: A prolateral view; B ventral view; C retrolateral view.
Cyclocosmia ricketti, male from Mangdang Mountain, right palpal bulb organ: A ventral view; B dorsal view.
Cyclocosmia ricketti, male from Mangdang Mountain, right palpal bulb organ: A prolateral view; B retrolateral view.
Distribution records of Cyclocosmia species (blue spots) and male C. ricketti in this study (green spot) in Asia: 1 C. lannaensis Schwendinger, 2005; 2 C. latusicosta Zhu, Zhang & Zhang, 2006; 3 C. liui Xu, Xu & Li, 2017; 4 C. ricketti (Pocock, 1901); 5 C. siamensis Schwendinger, 2005; 6 C. sublatusicosta Yu & Zhang, 2018; 7 C. subricketti Yu & Zhang, 2018.
First description of the male of Cyclocosmia ricketti (Araneae, Halonoproctidae) from China

January 2022

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408 Reads

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2 Citations

The genus Cyclocosmia Ausserer, 1871 of the spider family Halonoproctidae Pocock, 1901 includes ten known species from North America and Asia. Since Cyclocosmia ricketti was described by Pocock in 1901, no males of this species have ever been reported. The male of Cyclocosmia ricketti is described for the first time, based on a specimen collected near the type locality in Fujian Province, China. A morphological description and illustrations are given.


Two new species of the genus Chilobrachys (Araneae, Theraphosidae) from China

January 2022

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524 Reads

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4 Citations

Two new species of the genus Chilobrachys Karsh, 1892 are described from China: Chilobrachys dominus Lin & Li, sp. nov. from Yunnan and C. jinchengi Lin & Li, sp. nov. from Tibet. Photos and a morphological description of the new species are given. The type specimens of the new species are deposited in the Institute of Zoology, Chinese Academy (IZCAS) in Beijing.


Regulation of Key Enzymes in Lentinula Edodes Mycelium Culture by Chitosan

January 2022

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17 Reads

Chitosan is a plant growth regulator. Since it has an important function, it may also play a similar role in the growth of fungi. In this study, Lentinula edodes was used as a model fungus, and the mycelium growth and metabolism in the cultivation bag treated with different concentrations of chitosan were investigated. The results showed when the chitosan concentration was 0.1 mg/ml, a dense mycelium was developed and the fast growth was observed. Compared with other concentrations and the control group, they had significant differences. Furthermore, the activity of CMCase, Amy, and POD were measured, which showed significant differences in the rapid growth of the mycelium compared with other concentrations. The concentrations of 0.1 mg/mL will be chosen to promote the growth of Lentinula edodes ' mycelium in practical production.


Citations (9)


... Encapsulation is considered as a widely used method for entrapping sensitive compounds such as carotenoids in a solid or liquid carrier (de Freitas Santos, Rubio, da Silva, Pinho, & Favaro-Trindade, 2021a;Dias, Ferreira, & Barreiro, 2015). There are four types of carriers employed as wall materials which are classified based on their nature as lipids-based (Sirikhet, Chanmahasathien, Raiwa, & Kiattisin, 2021), proteins (İnan-Çınkır, Agcam, Altay, & Akyıldız, 2023), carbohydrates (Shi et al., 2023) and gums (Corrêa-Filho, Santos, Brito, Moldão-Martins, & Alves, 2022). Depending on the application, the carrier could be composed by a sole compound or in a combination, in order to improve the efficiency of the encapsulation system (Koo et al., 2023). ...

Reference:

Recent progress in carotenoid encapsulation: Effects on storage stability, bioaccessibility and bioavailability for advanced innovative food applications
Improvement in the stability and bioavailability of pumpkin lutein using β‐cyclodextrin microcapsules

... The terminology used in the text and figures for each family is as follows: Agelenidae: Li et al. (2019); Dictynidae: Li and Wang (2017); Hahniidae: Chu et al. (2023); Liocranidae: Lu et al. (2023); Macrobunidae: Lin et al. (2022b); Mysmenidae: Zhang et al. (2023) Nemesiidae: Lin et al. (2022a) and Zonstein and Marusik (2012); Nesticidae: Yang et al. (2023b); Ochyroceratidae: Tong et al. (2019); Oonopidae: Izquierdo and Ramírez (2017); Philodromidae: Dondale and Redner (1975) and Malamel et al. (2019); Salticidae: Lin and Li (2020) and Li et al. (2021a); Sparassidae: Cai et al. (2021); Symphytognathidae: Li et al. (2021b); Synotaxidae: Ramírez et al. (2022); Theridiidae: Agnarsson (2004); Theridiosomatidae: Feng and Lin (2019) and Suzuki et al. (2022); Zodariidae: Dankittipakul et al. (2012). ...

Raveniola yangren sp. n., a new troglobiontic spider from Hunan, China (Araneae, Nemesiidae)

... Haplocosmia sherwoodae was identified in China (Lin et al., 2022). We are reporting this species for the first time from Uttarkashi district however this needs further verification using molecular markers. ...

A new species of the tarantula genus Haplocosmia (Araneae, Theraphosidae) from Tibet, China

... The last description of this species was made by Jacobson in 1921 with only sketch of the habitus apart from which there are no detailed illustrations of the species since its original description. Only 10 species have been studied after their original description (Lin et al., 2022). The present paper aims to re-describe P. decipiens along with its first report from Assam, India. ...

Taxonomic notes on the genus Phrynarachne from China (Araneae, Thomisidae)

... In subsequent works [Gertsch, Platnick, 1975;Schwendinger, 2005;Zhu et al., 2006;Xu et al., 2017;Yu, Zhang, 2018;Lin et al., 2022;Yu et al., 2023] a number of new species were described from the USA and across Asia, and the missing sexes of some historical species have also been described. Currently, eight species are known from Asia: Cyclocosmia lannaensis Schwendinger, 2005 from China and Thailand, C. latusicosta Zhu, J.X. Zhang et F. Zhang, 2006from China and Vietnam, C. liui Xu, Xu et Li, 2017, C. ricketti (Pocock, 1901, C. ruyi Yu et Zhang, 2023, C. sublatusicosta Yu et Zhang, 2018and C. subricketti Yu et Zhang, 2018endemic to China, and C. siamensis Schwendinger, 2005 Thailand and Laos. ...

First description of the male of Cyclocosmia ricketti (Araneae, Halonoproctidae) from China

... The female genitalia were dissected and then cleared with a solution containing 3 M KOH in solution. The specimens were then compared to those of relatively related species (Zhu and Zhang 2008;West et al. 2012;Nunn et al. 2016;Nanayakkara et al. 2019;Yu et al. 2021;Lin et al. 2022aLin et al. , 2022b. The terminology for leg spines derives from Petrunkevitch (1925), with revisions suggested by Bertani (2001): If all spines in the apical region were positioned apically, the term "apical" would be used to describe their position. ...

Two new species of the genus Chilobrachys (Araneae, Theraphosidae) from China

... Macrothelidae Simon, 1892 has been recorded worldwide in two genera and 49 species, mainly in Asia and Africa and to a lesser extent in Europe (World Spider Catalog 2024). In China, 33 species of Macrothelidae have been recorded, representing 67.34% of the species diversity of the group, including 27 species of Macrothele Ausserer, 1871 spiders and six species of Vacrothele Tang & Yang, 2022(Lin et al. 2021Tang et al. 2022;Wu et al. 2022aWu et al. , 2022b. It is mainly distributed in Yunnan, Hainan, Guizhou, Guangxi, Hunan, and Taiwan, where most of the species are found in the southwestern part of the south, and no species of the family have been found in the north (World Spider Catalog 2023) (Fig. 1). ...

Five new species of Macrothele Ausserer, 1871 from China (Araneae, Macrothelidae)

... The brightness of the pork balls gradually faded, and the L* decreased after seven freeze-thaw cycles [30]. Second, iron and copper catalytic oxidation can cause color deepening and a drop in L* [31]. By efficiently preventing oxidation, 10% FI could induce a delayed drop in L*. ...

Effect of Multiple Freeze-Thaw Cycles on Myoglobin and Lipid Oxidations of Grass Carp (Ctenopharyngodon idella) Surimi with Different Pork Back Fat Content

Food Science of Animal Resources

... This observation suggests that when the external conditions are suitable, expanded stomata enhance CO 2 transmission, increasing carbon sequestration per unit area. Conversely, when the stomata are constracted, the denser matrix mesh insulates CA from external substances, preserving enzyme activity and maintaining protein conformation 35,36 . This isolation is beneficial for resisting the challenges of natural environments, extending EcoLeaf's service life, and securing its functionality. ...

Challenges and Opportunities: Porous Supports in Carbonic Anhydrase Immobilization
  • Citing Article
  • December 2020

Journal of CO2 Utilization