Xiujing He’s research while affiliated with Sichuan University and other places

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Publications (19)


Boosting TNBC immune checkpoint blockade with an imaging-therapy coupled ozone delivery nano system
  • Article

June 2024

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7 Reads

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3 Citations

Chemical Engineering Journal

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Zhihui Liu

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Xiujing He

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[...]

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Hubing Shi

A tentative pathogenic pathway for IGM proposed by Benson and colleagues. The damage of the epithelial lining caused by retention of ductal secretions leads to the leakage of content from the lumen into the surrounding lobular connective tissue, and the extravasation initiates local inflammatory reactions in which lymphocytes and macrophages are involved. These cells migrate to the periductal area, produce cytokines, and trigger a local granulomatous response that pathologically presents with noncaseating granulomas. Th, helper T cell; Treg, regulatory T cell; M, macrophage; B, B lymphocyte.
Mechanistic hypothesis of autoimmune cells involved in IGM. Th1 cells produce IL-2 that activates NK cells and multiplicates CD8T and NK cells. IFN-ɣ produced by NKT and Th1 cells activates macrophages that produces a variety of interleukins among which IL-23 increases Th1-produced IFN-ɣ. IL-4 (produced by NKT, Treg, and Th2 cells), IL-10 (produced by Treg and Th2 cells) and IL-13 (produced by Th2 cells) all deactivate macrophages; IL-4 also induces the differentiation of B cells. Th17 cells produce IL-22 that promotes proliferation, remodeling, and repair of tissues and organs to maintain innate host defense mechanism and IL-17 that participates in the activation and recruitment of neutrophils. Th, helper T cell; Treg, regulatory T cell; NKT, natural killer T cell; NK, natural killer cell; CD8T, cluster differentiation 8 positive T cell, also known as CTL, cytotoxic T lymphocyte; M, macrophage; B, B lymphocyte; Neu, neutrophil.
Reported cytokines associated with IGM.
Immune pathogenesis of idiopathic granulomatous mastitis: from etiology toward therapeutic approaches
  • Literature Review
  • Full-text available

March 2024

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65 Reads

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11 Citations

Idiopathic granulomatous mastitis (IGM) is a noncancerous, chronic inflammatory disorder of breast with unknown causes, posing significant challenges to the quality of life due to its high refractoriness and local aggressiveness. The typical symptoms of this disease involve skin redness, a firm and tender breast mass and mastalgia; others may include swelling, fistula, abscess (often without fever), nipple retraction, and peau d’orange appearance. IGM often mimics breast abscesses or malignancies, particularly inflammatory breast cancer, and is characterized by absent standardized treatment options, inconsistent patient response and unknown mechanism. Definite diagnosis of this disease relies on core needle biopsy and histopathological examination. The prevailing etiological theory suggests that IGM is an autoimmune disease, as some patients respond well to steroid treatment. Additionally, the presence of concurrent erythema nodosum or other autoimmune conditions supports the autoimmune nature of the disease. Based on current knowledge, this review aims to elucidate the autoimmune-favored features of IGM and explore its potential etiologies. Furthermore, we discuss the immune-mediated pathogenesis of IGM using existing research and propose immunotherapeutic strategies for managing this condition.

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The applications of AI techniques in transcriptomics. AI algorithms have extensively promoted the development of transcriptomics. Numerous cutting-edge bioinformatics frameworks have been established to perform specific tasks, such as gene expression inference, transcription factor binding site prediction, splicing prediction, cell deconvolution, batch effect removal, missing imputation, trajectory inference, clustering, and more. RF, random forest; SVM, support vector machine; PCA, principal component analysis; LASSO, least absolute shrinkage and selection operator; SVR, support vector regression; CNN, convolutional neural network; DNN, deep neural network; GAN, generative adversarial network; DaNN, domain-adversarial training of neural networks.
The applications of AI-assisted transcriptomics in cancer research. Transcriptomic technologies have become powerful tools to profile the cancer transcriptome at both bulk and single-cell levels. Currently, AI approaches have been pivotal in exploiting the big data generated by transcriptomic analysis. In particular, the application of machine learning and deep learning in the field of transcriptomic research is rapidly growing. AI-assisted transcriptomics has been frequently utilized to investigate tumor heterogeneity, the tumor microenvironment, novel target discovery, and immunotherapy toxicity.
Artificial Intelligence-Assisted Transcriptomic Analysis to Advance Cancer Immunotherapy

February 2023

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261 Reads

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8 Citations

The emergence of immunotherapy has dramatically changed the cancer treatment paradigm and generated tremendous promise in precision medicine. However, cancer immunotherapy is greatly limited by its low response rates and immune-related adverse events. Transcriptomics technology is a promising tool for deciphering the molecular underpinnings of immunotherapy response and therapeutic toxicity. In particular, applying single-cell RNA-seq (scRNA-seq) has deepened our understanding of tumor heterogeneity and the microenvironment, providing powerful help for developing new immunotherapy strategies. Artificial intelligence (AI) technology in transcriptome analysis meets the need for efficient handling and robust results. Specifically, it further extends the application scope of transcriptomic technologies in cancer research. AI-assisted transcriptomic analysis has performed well in exploring the underlying mechanisms of drug resistance and immunotherapy toxicity and predicting therapeutic response, with profound significance in cancer treatment. In this review, we summarized emerging AI-assisted transcriptomic technologies. We then highlighted new insights into cancer immunotherapy based on AI-assisted transcriptomic analysis, focusing on tumor heterogeneity, the tumor microenvironment, immune-related adverse event pathogenesis, drug resistance, and new target discovery. This review summarizes solid evidence for immunotherapy research, which might help the cancer research community overcome the challenges faced by immunotherapy.


Application of artificial intelligence to the public health education

January 2023

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622 Reads

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25 Citations

With the global outbreak of coronavirus disease 2019 (COVID-19), public health has received unprecedented attention. The cultivation of emergency and compound professionals is the general trend through public health education. However, current public health education is limited to traditional teaching models that struggle to balance theory and practice. Fortunately, the development of artificial intelligence (AI) has entered the stage of intelligent cognition. The introduction of AI in education has opened a new era of computer-assisted education, which brought new possibilities for teaching and learning in public health education. AI-based on big data not only provides abundant resources for public health research and management but also brings convenience for students to obtain public health data and information, which is conducive to the construction of introductory professional courses for students. In this review, we elaborated on the current status and limitations of public health education, summarized the application of AI in public health practice, and further proposed a framework for how to integrate AI into public health education curriculum. With the rapid technological advancements, we believe that AI will revolutionize the education paradigm of public health and help respond to public health emergencies.


Flowchart to indicate the literature screening process.
Application of artificial intelligence in breast cancer diagnosis.
Working model of medical imaging artificial intelligence. NACT, neoadjuvant chemotherapy.
Overview of Artificial Intelligence in Breast Cancer Medical Imaging

January 2023

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160 Reads

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55 Citations

The heavy global burden and mortality of breast cancer emphasize the importance of early diagnosis and treatment. Imaging detection is one of the main tools used in clinical practice for screening, diagnosis, and treatment efficacy evaluation, and can visualize changes in tumor size and texture before and after treatment. The overwhelming number of images, which lead to a heavy workload for radiologists and a sluggish reporting period, suggests the need for computer-aid detection techniques and platform. In addition, complex and changeable image features, heterogeneous quality of images, and inconsistent interpretation by different radiologists and medical institutions constitute the primary difficulties in breast cancer screening and imaging diagnosis. The advancement of imaging-based artificial intelligence (AI)-assisted tumor diagnosis is an ideal strategy for improving imaging diagnosis efficient and accuracy. By learning from image data input and constructing algorithm models, AI is able to recognize, segment, and diagnose tumor lesion automatically, showing promising application prospects. Furthermore, the rapid advancement of “omics” promotes a deeper and more comprehensive recognition of the nature of cancer. The fascinating relationship between tumor image and molecular characteristics has attracted attention to the radiomic and radiogenomics, which allow us to perform analysis and detection on the molecular level with no need for invasive operations. In this review, we integrate the current developments in AI-assisted imaging diagnosis and discuss the advances of AI-based breast cancer precise diagnosis from a clinical point of view. Although AI-assisted imaging breast cancer screening and detection is an emerging field and draws much attention, the clinical application of AI in tumor lesion recognition, segmentation, and diagnosis is still limited to research or in limited patients’ cohort. Randomized clinical trials based on large and high-quality cohort are lacking. This review aims to describe the progress of the imaging-based AI application in breast cancer screening and diagnosis for clinicians.



The clinical trial landscape of immunotherapy in combination with microbiota-based therapy. The graph shows the number of combination trials starting each year since 2017. The pie chart shows the proportion of different microbiota-based therapies.
Clinical evidence linking gut microbiota and cancer immunotherapy.
Continued) Clinical evidence linking gut microbiota and cancer immunotherapy.
Microbiota and their metabolites potentiate cancer immunotherapy: Therapeutic target or resource for small molecule drug discovery?

December 2022

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25 Reads

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2 Citations

Increasing evidence has proved that microbiota is not only the target of small molecule drugs but also an underexplored resource for developing small molecule drugs. Meanwhile, microbiota as a critical modulator of the immune system impacts the efficacy and toxicity of cancer immunotherapy. Harnessing microbiota or developing microbiota-derived medications provide novel therapeutic strategies to overcome resistance to cancer immunotherapy and immune-related adverse events (irAEs). In this review, we elucidate how microbiota and their metabolites impact anti-tumor immunity and immunotherapy efficacy and highlight the potential of microbiota and their metabolites as a resource for small molecule drug discovery. We further overview the current landscape of clinical trials evaluating the potential effect of microbiota and their metabolites on immunotherapy outcomes, presenting future trends in the field of microbiota-based therapies. Microbiota-based therapies are promising therapeutic options to promote therapeutic efficacy and diminish the toxicity of immunotherapy.


Artificial intelligence-based multi-omics analysis fuels cancer precision medicine

December 2022

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134 Reads

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156 Citations

Seminars in Cancer Biology

With biotechnological advancements, innovative omics technologies are constantly emerging that have enabled researchers to access multi-layer information from the genome, epigenome, transcriptome, proteome, metabolome, and more. A wealth of omics technologies, including bulk and single-cell omics approaches, have empowered to characterize different molecular layers at unprecedented scale and resolution, providing a holistic view of tumor behavior. Multi-omics analysis allows systematic interrogation of various molecular information at each biological layer while posing tricky challenges regarding how to extract valuable insights from the exponentially increasing amount of multi-omics data. Therefore, efficient algorithms are needed to reduce the dimensionality of the data while simultaneously dissecting the mysteries behind the complex biological processes of cancer. Artificial intelligence has demonstrated the ability to analyze complementary multi-modal data streams within the oncology realm. The coincident development of multi-omics technologies and artificial intelligence algorithms has fuelled the development of cancer precision medicine. Here, we present state-of-the-art omics technologies and outline a roadmap of multi-omics integration analysis using an artificial intelligence strategy. The advances made using artificial intelligence-based multi-omics approaches are described, especially concerning early cancer screening, diagnosis, response assessment, and prognosis prediction. Finally, we discuss the challenges faced in multi-omics analysis, with tentative future trends in this field. With the increasing application of artificial intelligence in multi-omics analysis, we anticipate a shifting paradigm in precision medicine becoming driven by artificial intelligence-based multi-omics technology.


Editorial: Linking cellular metabolism to hematological malignancies

November 2022

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24 Reads

Editorial on the Research Topic Linking cellular metabolism to hematological malignancies Convincing evidence has revealed that metabolic reprogramming orchestrates tumor initiation and progression, immune evasion, and drug resistance. Targeting metabolic vulnerabilities of tumors has remarkable advantages as a therapeutic strategy that exerts prominent antitumor effects, without affecting normal cell physiology. Indeed, the current treatment options based on metabolic reprogramming present impressive curative effects in solid tumors and hematological malignancies. A better understanding of tumor metabolic remodeling and immunometabolism will deepen the insights into disease mechanisms and promote the development of promising therapeutic strategies. This Research Topic intends to highlight the current understanding of the role of cellular metabolism in hematological malignancies, with the purpose of identifying new therapeutic targets and rational metabolic therapies alone or in combination with other regimens. The mechanism underlying metabolic reprogramming Arginine plays a multifaceted role in numerous crucial biological processes and exerts a significant impact on carcinogenesis and immune response. Arginine auxotrophic tumors, including many hematological malignancies, lose the ability to endogenously synthesize arginine; thus, arginine depletion therapy can serve as a promising antitumor therapeutic approach. Arginase is a prevalent arginine-depleting agent in clinical practice Frontiers in Oncology He X, Kashyap MK, Zhao ZJ, Yu J and Shi H (2022) Editorial: Linking cellular metabolism to hematological malignancies.


How does acral melanoma respond to immunotherapy?

November 2022

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6 Reads

British Journal of Dermatology

https://doi.org/10.1093/bjd/ljac035 As the most common melanoma subtype in patients with skin of colour, acral melanoma (AM) presents with an aggressive character and poor prognosis in clinics. Encouraged by the revolutionary achievement of immune checkpoint blockade in cutaneous melanoma, scientists have made an attempt to transfer this regimen to AM. In this issue of the BJD, Zhou et al. systematically characterize response patterns in patients with AM treated with anti-programmed death (PD)-1 monotherapy and they provide a prognostic model with six potential key factors.¹ Compared with cutaneous melanoma, AM shows lower tumour mutational burden but higher frequency of structural rearrangement and copy-number variations.² These characteristics imply a relatively weak and diversified response to T-cell-based immunotherapy. To provide guidance for precision treatment, the clinical response needs to be investigated comprehensively. In this article, the heterogeneous responses to immune checkpoint blockade are dissected at multiple levels, including interpatient, intrapatient and interlesion. Malignancies at different metastatic anatomical sites showed variant clinical responses. The best response rates were observed for metastases in lymph nodes whereas the worst were observed for liver metastases. Although diversified prognosis has been documented in the whole melanoma population previously,³ this study specified the outcomes in patients with AM.


Citations (14)


... Environmental and hormonal factors are suspected to play a role; the potential contribution of genetics remains unclear [21]. This study aimed to shed light on this by analyzing single nucleotide variants and CNVs in GM patients compared to healthy controls. ...

Reference:

Whole-Exome Sequencing: Discovering Genetic Causes of Granulomatous Mastitis
Immune pathogenesis of idiopathic granulomatous mastitis: from etiology toward therapeutic approaches

... Variational autoencoders, like those used in tools such as ScGen, model perturbation responses to help understand how AML cells react to therapeutic stress. These models are particularly useful in identifying subpopulations with resistance mechanisms (Gui et al. 2023). AI has the potential to assist patients with AML in selecting the best treatment options. ...

Artificial Intelligence-Assisted Transcriptomic Analysis to Advance Cancer Immunotherapy

... The global pandemic of coronavirus disease 2019 (COVID- 19), causing significant socioeconomic burdens worldwide, has drawn unprecedented research and political attention to public health [1]. Public health professionals (PHPs) play a crucial role in responding to public health emergencies such as COVID-19 and strengthening the public health system [2]. ...

Application of artificial intelligence to the public health education

... Collaborative efforts among governments, technology developers, and healthcare organizations will ensure ethical integration, sustainable funding, and broad adoption of these technologies. 45 Moreover, incorporating AI into comprehensive healthcare models that emphasize education, prevention, and treatment will enhance its overall impact. Ongoing research and pilot programs in various settings will help refine AI applications, paving the way for equitable and effective breast cancer screening worldwide. ...

Overview of Artificial Intelligence in Breast Cancer Medical Imaging

... Multi-omics approaches facilitate a deeper understanding of tumor heterogeneity and the molecular mechanisms underlying disease progression (11). Multi-omics methodologies are increasingly applied in PCa research, yielding promising results that enhance the understanding of PCa biology. ...

Artificial intelligence-based multi-omics analysis fuels cancer precision medicine
  • Citing Article
  • December 2022

Seminars in Cancer Biology

... PD-L1 is a well-established predictive biomarker for assessing the efficacy of ICIs [27]. Companion PD-L1 immunohistochemistry diagnostic assays have been approved by the Food and Drug Administration (FDA) to identify patients who are most likely to benefit from ICI treatments for various cancer types, such as non-small cell lung cancer (NSCLC), bladder cancer, and melanoma [39]. However, the predictive value of PD-L1 expression in patients with OC treated with anti-PD-1/PD-L1 antibodies remains controversial. ...

The current landscape of predictive and prognostic biomarkers for immune checkpoint blockade in ovarian cancer

... It has been reported that BBR enhances anti-non-small cell lung cancer immunity by inhibiting the deubiquitination activity of CSN5, therefore triggering ubiquitination and degradation of PD-L1 [19] . The antiinflammatory effect of BBR also contributes to improving the tumor microenvironment and promotes the infiltration of immune cells, thus enhancing the overall effect of anti-PD-L1 treatment [20] . ...

Combinatorial Strategies With PD-1/PD-L1 Immune Checkpoint Blockade for Breast Cancer Therapy: Mechanisms and Clinical Outcomes

... In 1999, Nicholson et al. proposed a discipline that uses various spectral, electrochemical, and data analysis techniques to analyze the body's metabolites, especially small molecules with a molecular weight of less than 1000 Da after being stimulated by external stimuli (Danzi et al. 2023). By detecting and analyzing metabolites in tumor tissues or body fluids, the metabolic state of tumor cells can be fully reflected and their unique metabolic characteristics can be discovered (Zuo et al. 2022). It is another important part of systems biology after genomics, transcriptomics, and proteomics (Neagu et al. 2023;Dar et al. 2023). ...

Single-Cell Metabolomics in Hematopoiesis and Hematological Malignancies

... For example, Xiaobo Zheng's research team discovered that the overexpression of BMX and HCK markedly enhanced the proliferation of colorectal epithelial cells. Further studies demonstrated that the upregulation of BMX and HCK activated the JAK-STAT signaling pathway, resulting in the formation of multilayered polypoid structures that mimic the pathologic polyps commonly found in colorectal cancers (59). These findings provide a theoretical foundation for the early prevention and development of new therapies for CRC epithelial cell transformation. ...

Single-cell transcriptomic profiling unravels the adenoma-initiation role of protein tyrosine kinases during colorectal tumorigenesis

Signal Transduction and Targeted Therapy

... The area under the receiver-operating characteristic curve (AUC) of LCP1 and ADPGK to predict irAE was 0.78 and 0.78, whereas the combination of LCP1 and ADPGK had a better AUC value at 0.80 (162). Another study established a tri-variate model composed of CDC42EP3-206, TMEM138-211, and IRX3-202 to predict irAEs by combining pharmacovigilance data and pan-cancer transcriptomic information (163). RNA and whole exon sequencing of tumors from 13 patients who developed ICI-induced diabetes mellitus (ICI-DM) showed significant overexpression of ORM1, PLG, G6PC and a missense mutation in NLRC5. ...

Pan-Cancer Analysis Reveals Alternative Splicing Characteristics Associated With Immune-Related Adverse Events Elicited by Checkpoint Immunotherapy