Xinyu Li’s research while affiliated with Inner Mongolia Agricultural University and other places

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Publications (12)


The effect of resveratrol on the cryopreservation of Mongolian horse semen
  • Article
  • Full-text available

January 2025

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10 Reads

Archives Animal Breeding

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Yuanyi Liu

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Lei Zhang

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[...]

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Manglai Dugarjaviin

Cryopreservation of semen has advanced significantly with the development of artificial insemination techniques, but post-thawed sperm often exhibit reduced viability, membrane integrity, and acrosome integrity compared to fresh sperm, leading to decreased fertilization capacity. Oxidative stress is a major concern during cryopreservation. This study investigated the use of resveratrol (RSV), a potent antioxidant, in the cryopreservation of Mongolian horse semen. Different concentrations of RSV were incorporated into semen cryopreservation extenders, and the morphological and antioxidant indices of post-thawed sperm were assessed to determine the optimal RSV concentration. The study also employed tandem mass tag (TMT) quantitative proteomics technology to explore differential proteins and their pathways. The results showed that sperm quality parameters were positively correlated with RSV concentration within a certain range (10–40 µmol L−1) and were significantly higher than the control group. RSV also enhanced the antioxidant capacity of sperm, with the optimal effect observed at 40 µmol L−1. Proteomics analysis identified 10 differential proteins between the control and optimal RSV concentration groups, with 7 upregulated proteins primarily involved in antioxidant activity and maintaining intracellular redox balance. These findings were further validated through real-time fluorescent quantitative PCR and protein immunoblotting, suggesting that RSV has potential as an effective antioxidant for improving the cryopreservation of Mongolian horse semen.

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Statistical and functional notes of differential abundant proteins (DAPs). (A) statistical results of differential protein; (B) Go classification statistics of differentially expressed proteins in SFF vs LFF group; (C) Go classification statistics of differentially expressed proteins in LFF vs MFF; (D) Go classification statistics of differentially expressed proteins in SFF vs MFF.
Functional enrichment and cluster analysis of DAPs. (A), (B), (C). Go enrichment of differential proteins in comparison groups; (D), (E), (F). KEGG enrichment of different proteins in comparison groups.
KEGG enrichment map of differential metabolite. (A) Kegg enrichment of differential metabolite in LFF vs MFF under ESI-: (B) Kegg enrichment of differential metabolite in LFF vs MFF under ESI + ; (C) Kegg enrichment of differential metabolite in LFF vs SFF under ESI-; (D) Kegg enrichment of differential metabolite in LFF vs SFF under ESI + ; (E) Kegg enrichment of differential metabolite in MFF vs SFF under ESI + .
KEGG enrichment analysis bubble diagram. (A) Proteomics and the ESI- of metabolomics-enriched KEGG pathways; (B) Proteomics and the ESI + of metabolomics-enriched KEGG pathways.
Quantitative analysis of proteins and metabolites. (A) Level of SAA1 protein in follicular fluid; (B) Level of INH A protein in follicular fluid; (C) Level of INH βA protein in follicular fluid; (D) Level of VCAN protein in follicular fluid; (E) Level of OMFML2B protein in follicular fluid; (F) The level of phosphatidylcholine in follicular fluid.
Proteome and metabolomic profile of Mongolian horse follicular fluid during follicle development

August 2024

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24 Reads

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1 Citation

During follicular development, changes in the composition of the follicular fluid are synchronized with the development of oocytes. Our aim was to screen the key factors affecting oocyte maturation and optimize the in vitro culture protocol by understanding the changes of proteins and metabolites in follicular fluid. Follicles are divided into three groups according to their diameter (small follicle fluid (SFF): 10 mm < d < 20 mm; medium follicle fluid (MFF): 20 mm < d < 30 mm; large follicle fluid (LFF): 30 mm < d). Proteins and metabolites from the follicular fluid were analyzed by mass spectrometry. The results showed that: in LFF vs MFF, 20 differential abundant protein (DAP) and 88 differential abundant metabolites (DAM) were screened out; In SFF vs MFF, 3 DAPs and 65 DAMs were screened out; In MFF vs SFF, 24 DAPs and 35 DAMs were screened out. The analysis of differential proteins and metabolites showed that glycerophosphate hydrolysis decreased during follicular development, and proteins played a major role in metabolism and binding. In addition, DAMs and DAPs are co-enriched in the “linoleic acid metabolism” pathway. Combinatorial analysis reveals the dynamic profile of follicular fluid during follicular development and provides fundation for further exploring the function of follicular fluid in Mongolian horse.


The drunkenness rate and mortality rate of mice by intragastric administration of liquor- gradient one.
The mortality rate of mice after intragastric administration of liquor and different doses of koumiss was compared.
Effect of koumiss on behavioral indexes of drunken mice.
Food from Equids—Commercial Fermented Mare’s Milk (Koumiss) Products: Protective Effects against Alcohol Intoxication

July 2024

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31 Reads

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1 Citation

Foods

Fermented mare’s milk (koumiss), a traditional Central Asian dairy product derived from fermented mare’s milk, is renowned for its unique sour taste and texture. It has long been consumed by nomadic tribes for its nutritional and medicinal benefits. This study aimed to comprehensively analyze the protective effects of koumiss against alcohol-induced harm across behavioral, hematological, gastrointestinal, hepatic, and reproductive dimensions using a mouse model. Optimal intoxicating doses of alcohol and koumiss doses were determined, and their effects were explored through sleep tests and blood indicator measurements. Pretreatment with koumiss delayed inebriation, accelerated sobering, and reduced mortality in mice, mitigating alcohol’s impact on blood ethanol levels and various physiological parameters. Histopathological and molecular analyses further confirmed koumiss’s protective role against alcohol-induced damage in the liver, stomach, small intestine, and reproductive system. Transcriptomic studies on reproductive damage indicated that koumiss exerts its benefits by influencing mitochondrial and ribosomal functions and also shows promise in mitigating alcohol’s effects on the reproductive system. In summary, koumiss emerges as a potential natural agent for protection against alcohol-induced harm, opening avenues for future research in this field.


Figure 2. Sequencing expression profiles of mRNA and lncRNA in sexually immature and sexually mature Mongolian horse testes. (A) PCA analysis of mRNA. The abscissa represents the first principal component, and the ordinate represents the second principal component. Different shapes in the graph represent different samples, and different colors represent different groups. (B) Violin plot of mRNA FPKM. The abscissa represents different samples, while the ordinate represents the logarithm of the FPKM value of the gene to base 10. (C) Upset plot of mRNA identified in each sample. "Number in each set" represents the total number of genes identified in each sample; "Number of each intersection" represents the number of genes identified across multiple samples; the connecting line of all points on the abscissa represents the number of common genes identified across all samples, while the remaining single points or connecting lines of multiple points represent the number of unique genes identified in the relevant samples. B: Sexually immature 1, F: Sexually immature 2, A: Sexually immature 3, E: Sexually mature 1, D: Sexually mature 2, C: Sexually mature 3. (D) PCA analysis of lncRNA. The abscissa represents the first principal component, and the ordinate represents the second principal component. Different shapes in the graph represent different samples, and different colors represent different groups. (E) Violin plot of lncRNA FPKM. The abscissa represents different samples, while the ordinate represents the logarithm of the FPKM value of the gene to base 10. (F) Upset plot of lncRNA identified in each sample. "Number in each set" represents the total number of genes identified in each sample; "Number of each intersection" represents the number of genes identified across multiple samples; the connecting line of all points on the abscissa represents the number of common genes identified across all samples, while the remaining single points or connecting lines of multiple points represent the number of unique genes identified in the relevant samples. A: Sexually immature 1, C: Sexually immature 2, B: Sexually immature 3, F: Sexually mature 1, E: Sexually mature 2, D: Sexually mature 3.
Figure 3. Differential mRNA analysis of testes from sexually immature and sexually mature Mongolian horses. (A) Clustering of differentially expressed genes in mRNA. Genes are represented horizontally, with each column representing a sample. Red indicates highly expressed genes, while green indicates lowly expressed genes. (B) Volcano plot of differential mRNA expression. The abscissa represents log2FoldChange, while the ordinate represents -log10 (p-value). The two vertical dashed lines in the figure represent the threshold for a twofold expression difference; the horizontal dashed line represents the p-value = 0.05 threshold. Red dots indicate upregulated genes in the group, blue dots indicate downregulated genes, and gray dots represent non-significantly differentially expressed genes. (C) Relative expression of selected screened upregulated differential genes, * indicates p < 0.05; ** p < 0.01. (D) Relative expression of selected screened downregulated differential genes, ** indicates p < 0.01.
Figure 6. Analysis of differential lncRNA target genes in testes of sexually immature and sexually mature Mongolian horses. (A) Relative expression of CHST8, ** indicates p < 0.01. (B) Relative expression of RPL7, * indicates p < 0.05.
Comparative Analysis of mRNA and lncRNA Expression Profiles in Testicular Tissue of Sexually Immature and Sexually Mature Mongolian Horses

June 2024

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36 Reads

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2 Citations

Animals

Testicular development and spermatogenesis are tightly regulated by both coding and non-coding genes, with mRNA and lncRNA playing crucial roles in post-transcriptional gene expression regulation. However, there are significant differences in regulatory mechanisms before and after sexual maturity. Nevertheless, the mRNAs and lncRNAs in the testes of Mongolian horses have not been systematically identified. In this study, we first identified the testicular tissues of sexually immature and sexually mature Mongolian horses at the tissue and protein levels, and comprehensively analyzed the expression profiles of mRNA and lncRNA in the testes of 1-year-old (12 months, n = 3) and 10-year-old (n = 3) Mongolian horses using RNA sequencing technology. Through gene expression analysis, we identified 16,582 mRNAs and 2128 unknown lncRNAs that are commonly expressed in both sexually immature and sexually mature Mongolian horses. Meanwhile, 9217 mRNAs (p < 0.05) and 2191 unknown lncRNAs (p < 0.05) were identified as differentially expressed between the two stages, which were further validated by real-time fluorescent quantitative PCR and analyzed using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The analysis results showed that genes in the sexually immature stage were mainly enriched in terms related to cellular infrastructure, while genes in the sexually mature stage were enriched in terms associated with hormones, metabolism, and spermatogenesis. In summary, the findings of this study provide valuable resources for a deeper understanding of the molecular mechanisms underlying testicular development and spermatogenesis in Mongolian horses and offer new perspectives for future related research.



Single-Cell Transcriptome Sequencing Reveals Molecular Expression Differences and Marker Genes in Testes during the Sexual Maturation of Mongolian Horses

April 2024

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46 Reads

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2 Citations

Animals

This study aimed to investigate differences in testicular tissue morphology, gene expression, and marker genes between sexually immature (1-year-old) and sexually mature (10-year-old) Mongolian horses. The purposes of our research were to provide insights into the reproductive physiology of male Mongolian horses and to identify potential markers for sexual maturity. The methods we applied included the transcriptomic profiling of testicular cells using single-cell sequencing techniques. Our results revealed significant differences in tissue morphology and gene expression patterns between the two age groups. Specifically, 25 cell clusters and 10 cell types were identified, including spermatogonial and somatic cells. Differential gene expression analysis highlighted distinct patterns related to cellular infrastructure in sexually immature horses and spermatogenesis in sexually mature horses. Marker genes specific to each stage were also identified, including APOA1, AMH, TAC3, INHA, SPARC, and SOX9 for the sexually immature stage, and PRM1, PRM2, LOC100051500, PRSS37, HMGB4, and H1-9 for the sexually mature stage. These findings contribute to a deeper understanding of testicular development and spermatogenesis in Mongolian horses and have potential applications in equine reproductive biology and breeding programs. In conclusion, this study provides valuable insights into the molecular mechanisms underlying sexual maturity in Mongolian horses.



Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine

August 2023

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21 Reads

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3 Citations

Comparative Biochemistry and Physiology Part D Genomics and Proteomics

The proliferation and differentiation of skeletal muscle satellite cells (SCs) are necessary for the development of mature skeletal muscle. Leucine (Leu) is both an essential amino acid (EAA) and a branched-chain amino acid (BCAA), which has attracted worldwide attention due to its ability to repair and become new fibers. We separated the equine SCs into the control group (CON) and the Leu-supplemented group (LEU), which the cells were cultured in Leu-deprived and Leu-supplemented media respectively. We combined the transcriptome (RNA-Seq) and quantitative proteome (TMT) profiling analyses on proliferation of equine SCs associated with Leu. 1839 up-regulated and 631 down-regulated genes made up the 2470 differentially expressed genes (DEGs), and the 253 differentially abundant proteins (DEPs) included 118 up-regulated and 135 down-regulated proteins. 110 overlapping genes were verified based on the mRNA and protein translation relationship. Moreover, by comparing overlapped pathways through enrichment analysis, we found 13 genes not only appeared among 110 key DEGs/DEPs but also enriched in the KEGG overlapping signaling pathway, including CCL26, STAT2, PCK2, ASNS, GPT2, SHMT2, PHGDH, PGAM2, PSAT1, FTL, HMOX1, STEAP1 and STEAP2. To our knowledge, this is the first report in the world to systematically show how Leu regulated the growth of equine SCs. Leu deficiency inhibits the proliferation of equine SCs and development of fresh muscle fibers was proved in this paper. The main genes in charge of the Leu-induced proliferation of horse SCs have been found. These genes will make it easier to understand the mechanism at work and offer new information for enhancing the performance of sport horses and alleviating the equine muscle damage during exercise in the future.


Figure 2. Immunofluorescence detection the expression of PAX7 protein in primary equine SCs. Figure 2. Immunofluorescence detection the expression of PAX7 protein in primary equine SCs.
Figure 12. The circRNA-miRNA-mRNA Network. Orange diamond and green ellipse represent the up-regulated and down-regulated genes, respectively; white round rectangle and hexagon show the up-regulated and down-regulated circRNA, respectively; red triangle and green V indicate the up-regulated and down-regulated miRNA, respectively. The pink and blue line represents the co-expression and regulatory relationship, respectively.
A Transcriptomic Regulatory Network among miRNAs, lncRNAs, circRNAs, and mRNAs Associated with L-leucine-induced Proliferation of Equine Satellite Cells

January 2023

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46 Reads

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9 Citations

Animals

In response to muscle injury, muscle stem cells are stimulated by environmental signals to integrate into damaged tissue to mediate regeneration. L-leucine (L-leu), a branched-chain amino acid (BCAA) that belongs to the essential amino acids (AAs) of the animal, has gained global interest on account of its muscle-building and regenerating effects. The present study was designed to investigate the impact of L-leu exposure to promote the proliferation of equine skeletal muscle satellite cells (SCs) on the regulation of RNA networks, including mRNA, long non-coding RNA (lncRNA), covalently closed circular RNA (circRNA), and microRNA (miRNA) in skeletal muscles. Equine SCs were used as a cell model and cultured in different concentrations of L-leu medium. The cell proliferation assay found that the optimal concentration of L-leu was 2 mM, so we selected cells cultured with L-leu concentrations of 0 mM and 2 mM for whole-transcriptiome sequencing, respectively. By high-throughput sequencing analysis, 2470 differentially expressed mRNAs (dif-mRNAs), 363 differentially expressed lncRNAs (dif-lncRNAs), 634 differentially expressed circRNAs (dif-circRNAs), and 49 differentially expressed miRNAs (dif-miRNAs) were significantly altered in equine SCs treated with L-leu. To identify the function of autoimmunity and anti-inflammatory responses after L-leu exposure, enrichment analysis was conducted on those differentially expressed genes (DEGs) related to lncRNA, circRNA, and miRNA. The hub genes were selected from PPI Network, including ACACB, HMGCR, IDI1, HAO1, SHMT2, PSPH, PSAT1, ASS1, PHGDH, MTHFD2, and DPYD, and were further identified as candidate biomarkers to regulate the L-leu-induced proliferation of equine SCs. The up-regulated novel 699_star, down-regulated novel 170_star, and novel 360_mature were significantly involved in the competing endogenous RNA (ceRNA) complex network. The hub genes involved in cell metabolism and dif-miRNAs may play fundamental roles in the L-leu-induced proliferation of equine SCs. Our findings suggested that the potential network regulation of miRNAs, circ-RNAs, lncRNAs, and mRNAs plays an important role in the proliferation of equine SCs, so as to build up new perspectives on improving equine performance and treatment strategies for the muscle injuries of horses.


Citations (7)


... This diverse mixture supports nutrient exchange and facilitates biological signaling between different components of the ovary, which is essential for key processes such as follicle development and oocyte maturation (Brinca et al. 2022;Pocate-Cheriet et al. 2020). As a result, FF plays a fundamental role in determining the quality of the oocytes and influences mammalian fertility and embryonic development (Li et al. 2024). In women, for example, age-related changes can also affect the follicular environment and significantly impact protein function, which in turn can affect the viability of oocytes and contribute to adverse pregnancy outcomes (Ahmed et al. 2020). ...

Reference:

The Influence of Ovarian-Derived Extracellular Vesicles in Reproduction
Proteome and metabolomic profile of Mongolian horse follicular fluid during follicle development

... Mongolian horses are an important breed with unique genetic characteristics and superior performance abilities (Du et al., 2024). However, their geographical distribution and limited population size pose challenges for genetic improvement and conservation (Liu et al., 2024). ...

Food from Equids—Commercial Fermented Mare’s Milk (Koumiss) Products: Protective Effects against Alcohol Intoxication

Foods

... The baked sections were stained with hematoxylin and eosin. Finally, neutral gum was used to seal the areas, and the paraffin sections after H.E. staining were observed using an orthogonal microscope [23,24]. ...

Comparative Analysis of mRNA and lncRNA Expression Profiles in Testicular Tissue of Sexually Immature and Sexually Mature Mongolian Horses

Animals

... The baked sections were stained with hematoxylin and eosin. Finally, neutral gum was used to seal the areas, and the paraffin sections after H.E. staining were observed using an orthogonal microscope [23,24]. ...

Single-Cell Transcriptome Sequencing Reveals Molecular Expression Differences and Marker Genes in Testes during the Sexual Maturation of Mongolian Horses

Animals

... Proteomics is an essential technique to determine the existence, protein type, and morphology of proteins in organisms, including protein expression level, translation and modification, and protein interaction (Wu et al., 2021). Because of the higher accuracy of multi-omics data compared to single-omics analysis, it is widely used to disclose the full picture of biological systems (Ritchie et al., 2015;Xing et al., 2023). The combined analysis of transcriptomics and proteomics is a practical method to study the internal regulatory mechanisms of organisms. ...

Integrated analysis of transcriptome and proteome for exploring mechanism of promoting proliferation of equine satellite cells associated with leucine
  • Citing Article
  • August 2023

Comparative Biochemistry and Physiology Part D Genomics and Proteomics

... The proteins on the blotted membrane were eluted with an elution buffer to eliminate other nonspecific proteins. Finally, the eluted proteins were subjected to immunodetection (Mishra et al., 2017;Xing et al., 2023a). The information related to antibodies is shown in Table S4. ...

A Transcriptomic Regulatory Network among miRNAs, lncRNAs, circRNAs, and mRNAs Associated with L-leucine-induced Proliferation of Equine Satellite Cells

Animals

... A study showed that RANBP2 acts as an inhibitor of premature maturation-promoting factor activation and the untimely degradation of securin in oocyte maturation, thereby preserving the accurate timing of the resumption of maturation and meiotic progression in mouse oocytes [27]. The PLA2G1B gene was found to be possible a newly discovered component affecting the efficacy of horse IVM/IVF [28]. A study observed that NYAP1 plays a key role in ovarian development by regulating target genes related to the oxytocin signaling pathway, and its differential expression level in Han sheep may contribute to improving fecundity [29]. ...

Proteomic differences between the ovulatory and anovulatory sides of the mare's follicular and oviduct fluid
  • Citing Article
  • December 2022

Journal of Equine Veterinary Science