Xiaohao Ruan’s research while affiliated with Shanghai Jiao Tong University and other places

What is this page?


This page lists works of an author who doesn't have a ResearchGate profile or hasn't added the works to their profile yet. It is automatically generated from public (personal) data to further our legitimate goal of comprehensive and accurate scientific recordkeeping. If you are this author and want this page removed, please let us know.

Publications (32)


IP26-12 METABOLOMIC PROFILING REVEALS CRITICAL LIPID METABOLIC SHIFTS ASSOCIATED WITH THE DEVELOPMENT OF CASTRATION RESISTANCE PROSTATE CANCER
  • Article

May 2025

·

2 Reads

The Journal of Urology

Ruofan Shi

·

Xiaohao Ruan

·

·

Rong Na

Meta‐analysis results for sub‐cohort 1 and 2 (tPSA <10 ng/mL subgroup). Meta‐analysis of sub‐cohort 1 and 2 examining the correlation between phi and pT3+ (A); phiD and pT3+ (B); phi and perineural invasion (C); phiD and perineural invasion (D). The above meta‐analyses were all conducted using a fixed‐effects model and employed the inverse‐variance weighting method.
Sensitivity analysis results for sub‐cohort 1 and 2 (tPSA <10 ng/mL subgroup). Sensitivity analysis corresponding to the four meta‐analysis in Figure 1 respectively: phi and pT3+ (A); phiD and pT3+ (B); phi and perineural invasion (C); phiD and perineural invasion (D).
phi and phiD predict adverse pathological features after radical prostatectomy for prostate cancer in Chinese population
  • Article
  • Full-text available

August 2024

·

28 Reads

·

1 Citation

Ruofan Shi

·

Da Huang

·

Jiaqi Yan

·

[...]

·

Rong Na

Background Anticipating the postoperative pathological stage and potential for adverse features of prostate cancer (PCa) patients before radical prostatectomy (RP) is crucial for guiding perioperative treatment. Methods A cohort consisting of three sub‐cohorts with a total of 709 patients has been enlisted from two major tertiary medical centres in China. The primary assessment parameters for adverse pathological features in this study are the pathological T stage, the AJCC prognostic stage groups and perineural invasion (PNI). Logistic regression analyses were performed to investigate the relationship between prostate specific antigen (PSA), its derivatives (incluing Prostate Health Index, phi and phi density, phiD), and the pathological outcomes after RP. Results Both phi and phiD showed a significant association with pathologic T stage of pT3 or above (phi, adjusted OR, AOR = 2.82, 95% confidence interval, 95% CI: 1.88–4.23, p < 0.001; phiD, AOR = 2.47, 95% CI: 1.76–3.48, p < 0.001) and PNI (phi, AOR = 2.15, 95% CI: 1.39–3.32, p < 0.001; phiD, AOR = 1.94, 95% CI: 1.38–2.73, p < 0.001). In a subgroup analysis with a total PSA value <10 ng/mL, phi and phiD continued to show a significant correlation with pT3 or above (phi, AOR = 4.70, 95% CI: 1.29–17.12, p = 0.019; phiD, AOR = 3.44, 95% CI: 1.51–7.85, p = 0.003), and phiD also maintained its predictive capability for PNI in this subgroup (AOR = 2.10, 95% CI: 1.17–3.80, p = 0.014). Sensitivity analysis indicated that the findings in the combined cohort are mainly influenced by one of the sub‐cohorts, partially attributable to disparities in sample sizes between sub‐cohorts. Combined analysis of phi(D) and multiparametric MRI (mpMRI) data yielded similar results. Conclusions Preoperative measurement of serum phi and phiD is valuable for predicting the occurrence of adverse pathological features in Chinese PCa patients after RP.

Download

Characteristics of the study participants
Comprehensive epidemiological analyses of urinary stone diseases in China: a population- based study

February 2024

·

25 Reads

Backgrounds: Urinary stone disease (USD, or urolithiasis) is common and poses a significant healthcare burden and health economic burden in a working-age population. We aim to provide epidemiological insights into the prevalence, incidence, trends, and risk factors of USD among the Chinese population. Methods: A prospective cohort study of 966,481 participants from the CHinese Electronic health Records Research during 2009-2022 in Yinzhou, China (CHERRY). Temporal trends were estimated by annual percentage changes (APC) using Joinpoint regression analyses. A stratified Cox proportional hazards regression and propensity score analyses were used to assess the effect of potential risk factors, population attribution factor (PAF) and number needed to prevent (NNTP). Results: Between 2014/2015 and 2021, there was an annualized increase in USD incidence by 5.3-6.8% (P<0.05). Tobacco smoking, alcohol drinking, high body mass index, diabetes, hyperlipidemia, hypertension, and heart disease were identified as risk factors while regular exercising was a protective factor of USD. PAF ranged from 22.5% in regular exercising (weekly) to 1.3% in non-drinking behavior. NNTP ranged from 21 in weekly exercising to 182 in non-smoking behavior. Conclusions: USD is a common disease affecting about 1 in 10 Chinese, and the incidence increased by 5-6% annually over the past 6-7 years. Lifestyle factors and metabolic symptoms are potential risk factors for USD.


Figure 1 Receiver operating characteristic curves analysis: comparing PHI, 18 F-PMSA-PET/MR, and the combination. PHI, prostate health index; PSMA, prostate-specific membrane antigen.
Figure 2 The changing trend of the AUC of the PHI and combination under different cutoffs. The vertical line represents the cutoff point where AUC values of both the PHI and combination model reach equality. AUC, area under the curve; PHI, prostate health index.
Sensitivity, specificity, PPV, and NPV of the combination under different PHI cutoffs.
Diagnostic value comparison of the combination of prostate-specific membrane antigen-body positron emission tomography/magnetic resonance imaging and Prostate Health Index with each alone in early diagnosis of prostate cancer

February 2024

·

6 Reads

Asian Journal of Urology

Objective This study aimed to figure out whether the combination of the prostate health index (PHI) and prostate-specific membrane antigen (PSMA)-PET/MR could improve the diagnostic accuracy for prostate cancer (PCa) than that of each individual method used alone. Methods In this prospective, observational study, 41 patients who underwent the systematic prostate biopsy between June 2019 and September 2022 were enrolled. Both the PHI test and ¹⁸F-PSMA-1007-PET/MR were performed prior to biopsies. The diagnostic accuracy of different models was compared by logistic regression, areas under the curve (AUCs) of the receiver operating characteristic, and net reclassification index (NRI). Results Among the 41 patients, 14 (34.1%) were pathologically diagnosed with PCa. The PHI in the PCa group was significantly higher than that in the benign group (44.4 vs. 35.0, p=0.048). Similarly, all the patients in the PCa group received positive results of ¹⁸F-PSMA-1007-PET/MR, of which the positive rate was significantly higher than that in benign group (100% vs. 62.96%, p=0.025). The ¹⁸F-PSMA-1007-PET/MR provided additional diagnostic values to the PHI (AUC: 0.802 vs. 0.692, p=0.025). However, there was no significant difference between the combination model and the ¹⁸F-PSMA-1007-PET/MR alone (AUC 0.802 vs. 0.685, p=0.071). The optimal PHI cutoff of the combination model is 32, with which the model could significantly reduce unnecessary biopsies (NRI: 22.22%, 95% confidence interval: 6.54%–37.90%, p=0.005). However, among patients with the PHI of ≥43.5, there was no significant difference between the combination model and the PHI alone (NRI: 11.11%, 95% confidence interval: −0.74%–22.97%, p=0.066). Conclusion The combination of the PHI and ¹⁸F-PSMA-1007-PET/MR outperforms the PHI alone for predicting PCa, especially in avoiding unnecessary biopsies. However, for patients with the PHI of ≥43.5, the addition of ¹⁸F-PSMA-1007-PET/MR to the PHI does not yield additional benefits.


The Impact of Prostate-Specific Antigen Screening on Prostate Cancer Incidence and Mortality in China: 13-Year Prospective Population-Based Cohort Study

January 2024

·

15 Reads

·

5 Citations

JMIR Public Health and Surveillance

Background The status of prostate-specific antigen (PSA) screening is unclear in China. Evidence regarding the optimal frequency and interval of serial screening for prostate cancer (PCa) is disputable. Objective This study aimed to depict the status of PSA screening and to explore the optimal screening frequency for PCa in China. Methods A 13-year prospective cohort study was conducted using the Chinese Electronic Health Records Research in Yinzhou study’s data set. A total of 420,941 male participants aged ≥45 years were included between January 2009 and June 2022. Diagnosis of PCa, cancer-specific death, and all-cause death were obtained from the electronic health records and vital statistic system. Hazard ratios (HRs) with 95% CIs were estimated using Cox regression analysis. Results The cumulative rate of ever PSA testing was 17.9% with an average annual percent change (AAPC) of 8.7% (95% CI 3.6%-14.0%) in the past decade in China. People with an older age, a higher BMI, higher waist circumference, tobacco smoking and alcohol drinking behaviors, higher level of physical activity, medication use, and comorbidities were more likely to receive PSA screening, whereas those with a lower education level and a widowed status were less likely to receive the test. People receiving serial screening ≥3 times were at a 67% higher risk of PCa detection (HR 1.67; 95% CI 1.48-1.88) but a 64% lower risk of PCa-specific mortality (HR 0.36; 95% CI 0.18-0.70) and a 28% lower risk of overall mortality (HR 0.72; 95% CI 0.67-0.77). People following a serial screening strategy at least once every 4 years were at a 25% higher risk of PCa detection (HR 1.25; 95% CI 1.13-1.36) but 70% (HR 0.30; 95% CI 0.16-0.57) and 23% (HR 0.77; 95% CI 0.73-0.82) lower risks of PCa-specific and all-cause mortality, respectively. Conclusions This study reveals a low coverage of PSA screening in China and provides the first evidence of its benefits in the general Chinese population. The findings of this study indicate that receiving serial screening at least once every 4 years is beneficial for overall and PCa-specific survival. Further studies based on a nationwide population and with long-term follow-up are warranted to identify the optimal screening interval in China.


Figure supplement 1. Scatter plot.
Risk of second primary cancers after a diagnosis of first primary cancer: A pan-cancer analysis and Mendelian randomization study

November 2023

·

41 Reads

·

11 Citations

eLife

Background The risk of second primary cancers (SPC) is increasing after the first primary cancers (FPC) are diagnosed and treated. The underlying causal relationship remains unclear. Methods We conducted a pan-cancer association (26 cancers) study in the Surveillance, Epidemiology, and End Results (SEER) database (non-Hispanic whites). The standardized incidence ratio (SIR) was estimated as the risk of SPCs in cancer survivors based on the incidence in the general population. Furthermore, the causal effect was evaluated by two-sample Mendelian Randomization (MR, 13 FPCs) in the UK Biobank (UKB, n=459,136,, European whites) and robust analysis (radial MR and Causal Analysis Using Summary Effect estimates, CAUSE). Results We found 11 significant cross-correlations among different cancers after harmonizing SIR and MR results. Whereas only 4 of them were confirmed by MR to have a robust causal relationship. In particular, patients initially diagnosed with oral pharyngeal cancer would have an increased risk of non-Hodgkin lymphoma (SIR SEER = 1.18, 95%Confidence Interval [CI]:1.05–1.31, OR radial-MR =1.21, 95% CI:1.13–1.30, p=6.00 × 10 ⁻³ ; OR cause = 1.17, 95% CI:1.05–1.31, p=8.90 × 10 ⁻³ ). Meanwhile, ovary cancer was identified to be a risk factor for soft tissue cancer (SIR SEER = 1.72, 95%Confidence Interval [CI]:1.08–2.60, OR radial-MR =1.39, 95% CI:1.22–1.58, p=1.07 × 10 ⁻³ ; OR cause = 1.36, 95% CI:1.16–1.58, p=0.01). And kidney cancer was likely to cause the development of lung cancer (SIR SEER = 1.28, 95%Confidence Interval [CI]:1.22–1.35, OR radial-MR =1.17, 95% CI:1.08–1.27, p=6.60 × 10 ⁻³ ; OR cause = 1.16, 95% CI:1.02–1.31, p=0.05) and myeloma (SIR SEER = 1.54, 95%Confidence Interval [CI]:1.33–1.78, OR radial-MR =1.72, 95% CI:1.21–2.45, p=0.02; OR cause = 1.49, 95% CI:1.04–2.34, p=0.02). Conclusions A certain type of primary cancer may cause another second primary cancer, and the profound mechanisms need to be studied in the future. Funding This work was in supported by grants from National Natural Science Foundation of China (Grant No. 81972645), Innovative research team of high-level local universities in Shanghai, Shanghai Youth Talent Support Program, intramural grant of The University of Hong Kong to Dr. Rong Na, and Shanghai Sailing Program (22YF1440500) to Dr. Da Huang.


Clinical translational research of liquid biopsy applications in prostate cancer and other urological cancers

October 2023

·

48 Reads

·

2 Citations

The aim of liquid biopsies is to obtain tumor information via the molecular interrogation of liquid samples, including blood and urine. As a minimally invasive procedure, liquid biopsies have attracted attention. A series of studies have reported associations of biomarkers such as circulating tumor DNA, cell-free DNA and extracellular vesicles with urological cancers, especially prostate cancer (PCa), and demonstrated the promising potential of liquid biopsies. In this review, we summarize recent clinical translational studies of liquid biopsies in PCa and other urological cancers, including bladder cancer and renal cell carcinoma. The number of translational studies was limited, and most of the studies focused on PCa. Biomarkers isolated from blood by different detection methods could be applied in clinical practice to predict prognosis and treatment response in advanced PCa. The other applications in urological cancers identified in previous studies remain to be explored further. Current studies are limited due to the lack of ideal standard detection methods for biomarkers. In the future, with advances in methodology, more translational studies will be conducted to identify potential applications of liquid biopsies in urological cancers.


Workflow for genetic risk evaluation and comparison
Multivariate analysis of associations between lethal prostate cancer among BPH/PV risk score or established prostate cancer risk scores. PCa, Prostate cancer; OR, Odds ratio; HR, Hazard ratio; CI, Confidence interval; PHS, Polygenic hazard score; BPH, Benign prostate hyperplasia; PV, prostate volume; SNP, Single nucleotide polymorphism; PRS, Polygenic risk score. The risk scores were standardized within each cohort by dividing by standard deviation. 1 PCa prevalence cohort: the cohort included all patients and used patient’s age at death or at last follow-up (2022 Jan 1st or lost) as time variable for mixed-effect Cox regression. Multivariate ORs were adjusted for age at last follow-up, family history, Charlson Comorbidity Index score, genotyping chip batches and 10 principal components. Multivariate HRs were adjusted for the same factors except for age. 2 PCa incidence cohort: the cohort excluded PCa patients before recruitment and used follow-up time as time variable for mixed-effect Cox regression. Multivariate ORs or HRs were adjusted for age at recruitment, family history, Charlson Comorbidity Index score, genotyping chip batches and 10 principal components. 3 PCa prognosis cohort: the cohort excluded patients without PCa at last follow-up and used survival time as time variable for mixed-effect Cox regression. Multivariate ORs or HRs were adjusted for age at onset, family history, Charlson Comorbidity Index score, genotyping chip batches and 10 principal components
Kaplan–Meier survival curves for mutation non-carriers and carriers across BPH/PV PRS categories. A in the non-carriers of PCa patients (n = 5,591, log-rank test for trend, P = 0.03), B in the DNA damage repair genes carriers (n = 243, log-rank test for trend, P = 0.28). PCa, prostate cancer; DDR, DNA damage repair
Genetic risk assessment of lethal prostate cancer using polygenic risk score and hereditary cancer susceptibility genes

July 2023

·

56 Reads

·

1 Citation

Journal of Translational Medicine

Background The genetic risk of aggressive prostate cancer (PCa) is hard to be assessed due to the lack of aggressiveness-related single-nucleotide polymorphisms (SNPs). Prostate volume (PV) is a potential well-established risk factor for aggressive PCa, we hypothesize that polygenic risk score (PRS) based on benign prostate hyperplasia (BPH) or PV-related SNPs may also predict the risk of aggressive PCa or PCa death. Methods We evaluated a PRS using 21 BPH/PV-associated SNPs, two established PCa risk-related PRS and 10 guideline-recommended hereditary cancer risk genes in the population-based UK Biobank cohort (N = 209,502). Results The BPH/PV PRS was significantly inversely associated with the incidence of lethal PCa as well as the natural progress in PCa patients (hazard ratio, HR = 0.92, 95% confidence interval [CI]: 0.87–0.98, P = 0.02; HR = 0.92, 95% CI 0.86–0.98, P = 0.01). Compared with men at the top 25th PRS, PCa patients with bottom 25th PRS would have a 1.41-fold (HR, 95% CI 1.16–1.69, P = 0.001) increased PCa fatal risk and shorter survival time at 0.37 yr (95% CI 0.14–0.61, P = 0.002). In addition, patients with BRCA2 or PALB2 pathogenic mutations would also have a high risk of PCa death (HR = 3.90, 95% CI 2.34–6.51, P = 1.79 × 10–7; HR = 4.29, 95% CI 1.36–13.50, P = 0.01, respectively). However, no interactive but independent effects were detected between this PRS and pathogenic mutations. Conclusions Our findings provide a new measurement of PCa patients’ natural disease outcomes via genetic risk ways.


Prostate cancer-related SNPs in the TERT locus and their linkage disequilibrium status. (A) Prostate cancer-related SNPs in European ancestry; (B) Prostate cancer-related SNPs in Chinese ancestry; (C) Aggressive prostate cancer-related SNPs in Chinese ancestry; (D) Prostate cancer-specific death-related SNPs in European ancestry.
Common susceptibility loci of prostate cancer in European and Chinese ancestry (OR, odds ratio; CI, confidence interval).
Prostate cancer survival curve of rs35812074 polymorphism. (The survival curve suggested a negative correlation between the C allele of rs35812074 and the survival rate. HR, hazard ratio; CI, confidence interval).
Significant associations between TERT SNPs and prostate cancer in Chinese ancestry.
Gene-based association between TERT and prostate cancer in European and Chinese ancestries.
Genetic Polymorphisms of the Telomerase Reverse Transcriptase Gene in Relation to Prostate Tumorigenesis, Aggressiveness and Mortality: A Cross-Ancestry Analysis

May 2023

·

62 Reads

·

1 Citation

Background: Telomerase reverse transcriptase (TERT) has been consistently associated with prostate cancer (PCa) risk. However, few studies have explored the association between TERT variants and PCa aggressiveness. Methods: Individual and genetic data were obtained from UK Biobank and a Chinese PCa cohort (Chinese Consortium for Prostate Cancer Genetics). Results: A total of 209,694 Europeans (14,550 PCa cases/195,144 controls) and 8873 Chinese (4438 cases/4435 controls) were involved. Nineteen susceptibility loci with five novel ones (rs144704378, rs35311994, rs34194491, rs144020096, and rs7710703) were detected in Europeans, whereas seven loci with two novel ones (rs7710703 and rs11291391) were discovered in the Chinese cohort. The index SNP for the two ancestries was rs2242652 (odds ratio [OR] = 1.16, 95% confidence interval [CI]:1.12-1.20, p = 4.12 × 10-16) and rs11291391 (OR = 1.73, 95%CI:1.34-2.25, p = 3.04 × 10-5), respectively. SNPs rs2736100 (OR = 1.49, 95%CI:1.31-1.71, p = 2.91 × 10-9) and rs2853677 (OR = 1.74, 95%CI:1.52-1.98, p = 3.52 × 10-16) were found significantly associated with aggressive PCa, while rs35812074 was marginally related to PCa death (hazard ratio [HR] = 1.61, 95%CI:1.04-2.49, p = 0.034). Gene-based analysis showed a significant association of TERT with PCa (European: p = 3.66 × 10-15, Chinese: p = 0.043) and PCa severity (p = 0.006) but not with PCa death (p = 0.171). Conclusion: TERT polymorphisms were associated with prostate tumorigenesis and severity, and the genetic architectures of PCa susceptibility loci were heterogeneous among distinct ancestries.


Schematic diagram of the MR design, rationale, and procedures (MR, Mendelian randomization).
Causal effects of modifiable behaviors on prostate cancer by UVMR and MVMR in the European discovery sample (UVMR, univariable Mendelian randomization; IVW, inverse-variance weighted).
Causal effects of modifiable behaviors on prostate cancer by UVMR and MVMR in the East Asian discovery sample (MVMR, multivariable Mendelian randomization; IVW, inverse-variance weighted).
Details of the instruments used for proxy behaviors on prostate cancer risk in European ancestry.
Details of the instruments used for proxy behaviors on prostate cancer risk in East Asian ancestry.
Causal Effects of Modifiable Behaviors on Prostate Cancer in Europeans and East Asians: A Comprehensive Mendelian Randomization Study

April 2023

·

66 Reads

·

4 Citations

Simple Summary As lifestyle intervention has come to the fore for cancer prevention, the causal effect of lifestyle behaviors on prostate cancer remains to be elucidated. No comparison across different ethnicities has been conducted previously. In this study, we used a novel instrumental variable methodology, namely, Mendelian randomization analysis, to explore the associations between a wide range of behavioral factors and prostate cancer in both Europeans and East Asians. The results of this study showed that lifetime tobacco smoking was positively related to an increased prostate cancer risk in Europeans. In East Asians, alcohol consumption and delayed sexual initiation were risk factors, while vegetable intake was a protective factor for prostate cancer. These findings largely broaden the evidence base for the spectrum of risk factors for prostate cancer, and provide insights into the priority of behavioral interventions for high-risk groups in different population settings. Abstract Objective: Early evidence is disputable for the effects of modifiable lifestyle behaviors on prostate cancer (PCa) risk. No research has yet appraised such causality in different ancestries using a Mendelian randomization (MR) approach. Methods: A two-sample univariable and multivariable MR analysis was performed. Genetic instruments associated with lifestyle behaviors were selected based on genome-wide association studies. Summary-level data for PCa were obtained from PRACTICAL and GAME-ON/ELLIPSE consortia for Europeans (79,148 PCa cases and 61,106 controls), and ChinaPCa consortium for East Asians (3343 cases and 3315 controls). Replication was performed using FinnGen (6311 cases and 88,902 controls) and BioBank Japan data (5408 cases and 103,939 controls). Results: Tobacco smoking was identified as increasing PCa risks in Europeans (odds ratio [OR]: 1.95, 95% confidence interval [CI]: 1.09–3.50, p = 0.027 per standard deviation increase in the lifetime smoking index). For East Asians, alcohol drinking (OR: 1.05, 95%CI: 1.01–1.09, p = 0.011) and delayed sexual initiation (OR: 1.04, 95%CI: 1.00–1.08, p = 0.029) were identified as risk factors, while cooked vegetable consumption (OR: 0.92, 95%CI: 0.88–0.96, p = 0.001) was a protective factor for PCa. Conclusions: Our findings broaden the evidence base for the spectrum of PCa risk factors in different ethnicities, and provide insights into behavioral interventions for prostate cancer.


Citations (14)


... Some patients may face a new health problem, a second primary malignancy. The second primary cancer (SPC) is defined as a second malignancy that occurs at the same time as or after the first cancer diagnosis [3]. In a study of the risk of SPC in long-term early BC survivors, the cumulative incidence of developing SPCs after early-stage initial primary BC was 7.43% at 10 years, 14.41% at 15 years, and 20.08% at 20 years [4]. ...

Reference:

Survival Analysis of Secondary Primary Lung Cancer After Breast Cancer Patients: Insights From a Retrospective Single‐Center Study of Clinical Outcomes and Prognostic Indicators
Risk of second primary cancers after a diagnosis of first primary cancer: A pan-cancer analysis and Mendelian randomization study

eLife

... The use of liquid biopsy has completely changed some clinical practices and improved patient outcomes [14]. Circulating tumour DNA (ctDNA), i.e., the part of cfDNA that enters the bloodstream as a result of tumour cell death [15], has been shown to be an informative circulating tool in both BC and PCa [16,17]. For example, early-stage ctDNA clearance has been associated with higher rates of complete pathological response after neoadjuvant treatment and with a low rate of disease relapse in BC [17]. ...

Clinical translational research of liquid biopsy applications in prostate cancer and other urological cancers

... There were several past GWAS related to prostate cancer [6][7][8][9][10][11][12]. Approximately 30% of patients with prostate cancer have experienced biochemical recurrence (BCR) within ten years after resection [13], and the critical predictors of BCR include prostate-specific antigen (PSA), the Gleason score, and the pathological stage. ...

Genetic risk assessment of lethal prostate cancer using polygenic risk score and hereditary cancer susceptibility genes

Journal of Translational Medicine

... demonstrated that RNF19A-mediated ubiquitination of BARD1 can inhibit BRCA1/BARD1-dependent homologous recombination. Similarly, Zhang et al. [9]. found that RNF19A ubiquitinates Thyroid Hormone Receptor Interacting Protein 13 (TRIP13), a process influenced by the transcriptional activation of androgen receptor (AR) and hypoxia-inducible factor 1-alpha (HIF1A), which contributes to drug resistance in prostate cancer. ...

CRISPR Screening Reveals Gleason Score and Castration Resistance Related Oncodriver Ring Finger Protein 19 A (RNF19A) in Prostate Cancer
  • Citing Article
  • January 2023

Drug Resistance Updates

... [3][4][5] While these studies have significantly advanced our understanding of genetic alterations in Prostate cancer, relatively little is known about the contribution of noncoding regulatory elements, particularly enhancers, in disease progression. Emerging evidence suggests that enhancer dysregulation plays a central role in driving oncogenic transcriptional programs, 6,7 highlighting the need for deeper exploration of enhancer-associated molecular mechanisms in prostate cancer biology. ...

Extensive germline-somatic interplay contributes to prostate cancer progression through HNF1B co-option of TMPRSS2-ERG

... Given an bio-moduleŴˆ, where λ is the number of edges in moduleŴˆ, the calculation method of the module's connection strength [10] is as follows: ...

Exploration of the cancer genome atlas database reveals genes of interest related with cancer cell stemness indices in clear cell renal cell carcinoma

Heliyon

... Comparable studies report an AUROC of 0.78-0.94 [8,16,17,25], which varies with the definition of bacteriuria and the variables selected for the different models. While most studies in line with our results found BACT/µL and WBC/µL to be the optimal model [8,[25][26][27], others found the best model to be BACT/µL alone [17,18,28] or added red blood cells or squamous epithelial cells to the model for higher AUROCs or detection of contamination [15,16]. ...

The diagnostic value of rapid urine test platform UF-5000 for suspected urinary tract infection at the emergency department

... 4 6 14 However, European-derived PRSs perform variably when applied to other populations due to differences in linkage disequilibrium patterns, distinct risk loci resulting from varying selection pressures in independent populations and sparse availability of genetic data in non-European populations. [15][16][17] Evidence of transferability across populations must be established prior to considering clinical implementation. This study aimed to evaluate a diverticular disease PRS in a diverse cohort. ...

Application of European‐specific polygenic risk scores for predicting prostate cancer risk in different ancestry populations
  • Citing Article
  • August 2022

The Prostate

... For the bidirectional Two-sample MR analysis to infer causal relationships, methods including IVW, weighted median, MR-Egger, simple mode, and weighted mode were employed, with IVW as the primary MR analytical method [17]. IVW combines the MR effect estimates of each SNP to produce an overall weighted estimate of the potential causal effect; the results of IVW are most reliable when the instrumental variables do not have horizontal pleiotropy [18]. ...

Association between cannabis use with urological cancers: A population‐based cohort study and a mendelian randomization study in the UK biobank

... Multiple studies demonstrated that SNPs in miRNAs could affect gene expression function by regulating the transcription of primary transcripts, the processing and maturation of priand pre-miRNAs, or targeted binding to mRNAs [12]. 3′-UTR SNPs in miRNA binding sites have been associated with various complicated human diseases, including cancer [13], rheumatic disease [14], and Alzheimer's disease [15]. A recent study identified that SNP rs41291957 located at the miR-143/145 locus modulated miR-143 and miR-145 expression, ultimately influencing the risk of coronary heart disease [16]. ...

Genome‐Wide 3′‐UTR Single Nucleotide Polymorphism Association Study Identifies Significant Prostate Cancer Risk‐Associated Functional Loci at 8p21.2 in Chinese Population