Wenzhu Song’s research while affiliated with Zhejiang Medical University and other places

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Publications (1)


Study design and workflow of cohort derivation
Discrimination performance of KOA classification models in testing set. Tree: decision tree; L: lasso; A AdaLASSO; B boruta; XGBoost: eXtreme Gradient Boosting; Adaboost: adaptive boosting; PPV: positive predictive value; NPV: negative predictive value; AUC: area under the curve
SHAP summary plot. (A) Bar charts that rank the importance of 17 indicators identified by SHAP values. (B) Distribution of the impact each feature had on the full model output using SHAP values. RROM: knee flexion angle; RROM1: knee extension angle; RROM2: knee excessive flexion or extension; WTest: timing a 50-foot walk; WYears: work yesrs; RAlign: right femur-tibia angle; BMI: body mass index. E03: In the past 12 months, have you ever had joint pain, stiffness, or soreness that lasted at least 1 month? B15: Stand up from a straight-back seat without armrests? B07: Bend over, squat or kneel? B05: You don’t need to rest when you walk to the first floor? E06: In the past month, have you restricted your daily activities because of knee pain, sore and stiff knees? B03: Walk two miles? B01: Walk a mile? C16: Walk a mile?
SHAP force plot. (A) SHAP force plot for un-KOA participant (No. 10264). (B) SHAP force plot for KOA participant (No. 10031). (C) X-ray imaging of the right knee joint of non-KOA participant (No. 10264). (D) X-ray imaging of the right knee joint of KOA participant (No. 10031). RROM: knee flexion angle; RROM1: knee extension angle; RROM2: knee excessive flexion or extension; WTest: timing a 50-foot walk; RAlign: right femur-tibia angle; BMI: body mass index. E03: In the past 12 months, have you ever had joint pain, stiffness, or soreness that lasted at least 1 month? B15: Stand up from a straight-back seat without armrests. B07: Bend over, squat or kneel? B05: You don’t need to rest when you walk to the first floor? B03: Walk two miles? B15: Stand up from a straight-back seat without armrests
XGBoost-SHAP-based interpretable diagnostic framework for knee osteoarthritis: a population-based retrospective cohort study
  • Article
  • Full-text available

December 2024

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6 Reads

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2 Citations

Arthritis Research & Therapy

Zijuan Fan

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Wenzhu Song

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Bin Wang

Objective To use routine demographic and clinical data to develop an interpretable individual-level machine learning (ML) model to diagnose knee osteoarthritis (KOA) and to identify highly ranked features. Methods In this retrospective, population-based cohort study, anonymized questionnaire data was retrieved from the Wu Chuan KOA Study, Inner Mongolia, China. After feature selections, participants were divided in a 7:3 ratio into training and test sets. Class balancing was applied to the training set for data augmentation. Four ML classifiers were compared by cross-validation within the training set and their performance was further analyzed with an unseen test set. Classifications were evaluated using sensitivity, specificity, positive predictive value, negative predictive value, accuracy, area under the curve(AUC), G-means, and F1 scores. The best model was explained using Shapley values to extract highly ranked features. Results A total of 1188 participants were investigated in this study, among whom 26.3% were diagnosed with KOA. Comparatively, XGBoost with Boruta exhibited the highest classification performance among the four models, with an AUC of 0.758, G-means of 0.800, and F1 scores of 0.703. The SHAP method reveals the top 17 features of KOA according to the importance ranking, and the average of the experience of joint pain was recognized as the most important features. Conclusions Our study highlights the usefulness of machine learning in unveiling important factors that influence the diagnosis of KOA to guide new prevention strategies. Further work is needed to validate this approach.

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Citations (1)


... Over the past few years, machine learning (ML) has achieved rapid progress, which has paved the way for the development of innovative healthcare tools, such as early disease detection. Equipped with extensive patient data and persistent learning, these algorithms are designed to analyze multiple medical heuristics such as blood pressure, cholesterol, or resting heart rate, ultimately providing actionable insights that enhance both diagnostic accuracy and healthcare resource efficiency [1] Such progress is paramount in tackling worldwide medical problems existing in limited-resource settings, where the use of diagnostics would be critical in reducing disparities in care delivery [2]- [3]. ...

Reference:

A Comparative Evaluation of Random Forest and XGBoost Models for Disease Detection Using Medical Indicators
XGBoost-SHAP-based interpretable diagnostic framework for knee osteoarthritis: a population-based retrospective cohort study

Arthritis Research & Therapy