Weimin Zhang’s research while affiliated with First Affiliated Hospital of China Medical University and other places

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Publications (45)


An overview of the analysis workflow of the study
The workflow involved four steps construction of a multi-omics dataset, subgroup identification, model validation in an independent cohort, and development of a proteomic signature. LASSO least absolute shrinkage and selection operator, ROC receiver operating characteristics, AUC area under curve, RNA-seq ribonucleic acid sequencing.
Survival curves stratified by the recommended and received subgroups, with the shaded area indicating the 95% CI
Groups are denoted as “Recmd_Actual,” where, for instance, “Liberal_Restrict” signifies a recommendation for a liberal fluid strategy but actual receipt of a restrictive one. Censored patients are denoted by small “+“ symbols. Data are presented as mean values and a 95% CI.
Comparison of clinical and transcriptomic features between patients who may benefit from restrictive fluid strategy and those who may benefit from liberal strategy
a The two groups, liberal (n = 260) and restrictive (n = 92), were compared for their differences in clinical features. Analysis of variance (ANOVA) was employed to assess the statistical differences in each variable represented on the x-axis across the four groups. Significance levels are indicated with asterisks as follows: *p < 0.05, **p < 0.01, and ****p < 0.001. Data are presented as mean values ± SEM, and it is noted that all variables have been normalized for comparison purposes. b A plot matrix is presented to illustrate the distribution of samples within the clinical feature space, as defined by the first three principal components. c Similarly, another plot matrix shows the distribution of samples within the transcriptomic feature space, also based on the first three principal components. urine Urine volume; plt platelet count, pcvo central venous oxygen saturation, sapmin minimum arterial lactate, cl creatinine level, tmin minimum body temperature, scvo mixed venous oxygen saturation, wbc white blood cell count, paco arterial carbon dioxide pressure, inr international normalized ratio, rrmax maximum respiratory rate, alb albumin, k potassium, mapmax maximum mean arterial pressure, ddimer D-dimer, hct Hematocrit, mapmin minimum mean arterial pressure, gcs Glasgow coma scale, pao arterial oxygen pressure, aptt activated partial thromboplastin time, lac lactic acid, SaO2 arterial oxygen saturation, procal procalcitonin, phcv pH of central venous blood, na sodium, ca calcium, hrmax maximum heart rate, abe base excess, tt thrombin time, tmax maximum body temperature, crp C-reactive protein, sapmax maximum arterial lactate, age age, hrmin minimum heart rate, rrmin minimum respiratory rate, bilirubin bilirubin, height height, cr creatinine clearance, pha pH value of arterial blood, pcvco carbon dioxide of central venous blood, bun blood urea nitrogen, fio2 fractional inspired oxygen, SOFA sequential organ failure assessment score, scaled_value scaled value.
Transcriptomic profiles of the recommended restrictive vs liberal fluid strategy groups
a A volcano plot illustrates differentially expressed genes between restrictive and liberal fluid strategy groups. Positive values denote higher expression in the restrictive group than the liberal group. p-values were adjusted using the Benjamini–Hochberg procedure. b The dot plot displays gene ontology (GO) enrichment pathways for the differentially expressed genes. Adjusted two-sided p-values are indicated by color, while circle size represents gene count. c The dot plot exhibits Molecular Knowledge-based Kyoto Encyclopedia of Genes and Genomes (MKEGG) enrichment pathways for the differentially expressed genes. Adjusted two-sided p-values are depicted by color, with circle size indicating gene count. d A tree plot presents GO enrichment pathways for differentially expressed genes using gene set enrichment analysis (GSEA). Adjusted two-sided p-values are visualized by color, while circle size reflects gene count. MKEGG refers to the “molecular knowledge-based” pathway database provided by the Kyoto Encyclopedia of Genes and Genomes (KEGG). This database contains curated information on molecular interactions, reactions, and pathways in various biological systems, including metabolic pathways, signaling pathways, and diseases. In the figure, Ensembl IDs and gene symbols are used. Some genes do not have official gene symbols because they were recently discovered or annotated and might not have been evaluated and approved. Some genomic elements, such as pseudogenes or certain types of non-coding RNA, may not be given symbols because they do not encode proteins or have known regulatory functions. For instance, the Ensembl ID ENSG00000264063 corresponds to an RNA gene that is specifically categorized under the class of microRNAs (miRNAs). As a non-coding RNA, it has not been assigned a conventional gene symbol.
Identification of two sepsis endotypes in the transcriptomic space
a This panel provides a visualization of the sepsis endotypes in the space defined by the first two principal components. The clusters are differentiated by color and point shape, indicating the distinct transcriptomic profiles of each endotype. b The distribution of the benefit score within the PCA space is depicted, with the red color signifying patients who are more likely to benefit from a restrictive fluid strategy, and the blue color indicating those who may benefit from a liberal fluid strategy. c A volcano plot is presented to illustrate the differentially expressed genes between the two sepsis endotypes. Genes are identified using their Ensembl IDs and gene symbols. It is noted that some genes, particularly those recently discovered or annotated, may not have official gene symbols. Additionally, certain genomic elements such as pseudogenes or specific types of non-coding RNA, which do not encode proteins or have established regulatory functions, may lack symbols. Adjusted two-sided p-values were reported. d A tree plot is utilized to present GO enrichment pathways for the differentially expressed genes, as determined by GSEA. The adjusted two-sided p-values are represented by color intensity, with the circle size corresponding to the count of genes within each pathway.

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Identifying septic shock subgroups to tailor fluid strategies through multi-omics integration
  • Article
  • Full-text available

October 2024

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201 Reads

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3 Citations

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Lin Chen

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Bin Sun

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Yucai Hong

Fluid management remains a critical challenge in the treatment of septic shock, with individualized approaches lacking. This study aims to develop a statistical model based on transcriptomics to identify subgroups of septic shock patients with varied responses to fluid strategy. The study encompasses 494 septic shock patients. A benefit score is derived from the transcriptome space, with higher values indicating greater benefits from restrictive fluid strategy. Adherence to the recommended strategy is associated with a hazard ratio of 0.82 (95% confidence interval: 0.64–0.92). When applied to the baseline hospital mortality rate of 16%, adherence to the recommended fluid strategy could potentially lower this rate to 13%. A proteomic signature comprising six proteins is developed to predict the benefit score, yielding an area under the curve of 0.802 (95% confidence interval: 0.752–0.846) in classifying patients who may benefit from a restrictive strategy. In this work, we develop a proteomic signature with potential utility in guiding fluid strategy for septic shock patients.

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Retrospective analysis of interpretable machine learning in predicting ICU thrombocytopenia in geriatric ICU patients

July 2024

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27 Reads

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1 Citation

We developed an interpretable machine learning algorithm that prospectively predicts the risk of thrombocytopenia in older critically ill patients during their stay in the intensive care unit (ICU), ultimately aiding clinical decision-making and improving patient care. Data from 2286 geriatric patients who underwent surgery and were admitted to the ICU of Dongyang People’s Hospital between 2012 and 2021 were retrospectively analyzed. Integrated algorithms were developed, and four machine-learning algorithms were used. Selected characteristics included common demographic data, biochemical indicators, and vital signs. Eight key variables were selected using the Least Absolute Shrinkage and Selection Operator and Random Forest Algorithm. Thrombocytopenia occurred in 18.2% of postoperative geriatric patients, with a higher mortality rate. The C5.0 model showed the best performance, with an area under the receiver operating characteristic curve close to 0.85, along with unparalleled accuracy, precision, specificity, recall, and balanced accuracy scores of 0.88, 0.98, 0.89, 0.98, and 0.85, respectively. The support vector machine model excelled at predictively assessing thrombocytopenia severity, demonstrating an accuracy rate of 0.80 in the MIMIC database. Thus, our machine learning-based models have considerable potential in effectively predicting the risk and severity of postoperative thrombocytopenia in geriatric ICU patients for better clinical decision-making and patient care.


The diagram showing the patient screening process.
Comparison of general clinical data between the two groups on the first day of hospitalization.
Comparison of laboratory indexes between the two groups on the first day of hospitalization.
Multivariate logistic regression analysis of predictive risk factor of PICS in the ICU.
Predictive value of early measurement of cytokine levels for persistent inflammation-immunosuppression-catabolism syndrome in ICU patients: A retrospective study

January 2024

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15 Reads

European Journal of Inflammation

Investigating cytokine levels in ICU patients reveals their potential in predicting the occurrence of Persistent Inflammatory Response-Immunosuppression-Catabolic Syndrome (PICS). Our study encompassed clinical data from ICU patients admitted between December 2020 and January 2022. The cohort was divided based on the incidence of PICS, and a comparative analysis was conducted on their clinical data. Using logistic regression, we identified independent factors influencing PICS. Among 132 patients meeting our inclusion criteria, 39 (31.70%) developed PICS. Significant differences were observed between the PICS and non-PICS groups in terms of average age, APACHE II scores, hospital stay duration, mortality, and infection rates. Notably, laboratory parameters indicated lower pre-albumin and IL-4 levels, alongside higher IL-6, IL-10, IL-17, and IFN-y levels in the PICS group. Multivariate analysis pinpointed pre-albumin, IL-4, IL-6, and IL-10 as independent risk factors for PICS in ICU settings. Our findings underscore the importance of IL-4, IL-6, and IL-10 as key cytokines in the early detection and management of PICS, offering significant insights for clinical practice.


A chest radiograph shows no obvious abnormalities in both lungs.
Extracorporeal membrane oxygenation treatment for severe asthma had unexpected adverse effects: a case report

November 2023

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10 Reads

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1 Citation

Asthma, a chronic respiratory ailment, affects millions worldwide. Extracorporeal membrane oxygenation (ECMO) has gained traction as a life-saving intervention for patients with severe asthma who are unresponsive to conventional treatments. However, complications associated with ECMO, including electrolyte imbalances and hemorrhage, can have significant clinical implications. This case report highlights a 49 years-old male patient with severe asthma who developed pronounced hypokalemia and hemorrhage following venovenous ECMO (VVECMO) therapy. Despite potassium supplementation, serum potassium levels continued declining before normalizing after 24 h. The patient subsequently experienced gastrointestinal bleeding, cerebral hemorrhage, and extensive cerebral infarction, ultimately resulting in a deep coma. Hypokalemia during ECMO therapy can result from a rapid reduction of carbon dioxide, β-receptor agonist use, corticosteroid use, and diuretic administration. Hemorrhage is another common ECMO complication, often linked to heparin anticoagulation therapy. Clinicians should be aware of potential complications and adopt appropriate prevention and management strategies when using ECMO in patients with severe asthma.


Prolonged misdiagnosis of mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes syndrome: A case report

November 2023

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3 Reads

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1 Citation

Medicine

Rationale Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome is a subset of rare mitochondrial diseases characterized by diverse clinical manifestations, which often complicates its diagnosis. Patient concerns This report chronicles the experiences of a 14-year-old female patient who underwent multiple misdiagnoses before the eventual identification of MELAS syndrome. Her journey began with symptoms that included growth retardation, hypertrophic cardiomyopathy, and epilepsy. Diagnosis The definitive diagnosis of MELAS syndrome was established through genetic confirmation, revealing a mutation in the MT-TL1 gene (m.3242A > G). Interventions Upon diagnosis, the patient received targeted symptomatic treatment, which led to pronounced improvements in her symptoms. Outcomes The patient’s condition stabilized with the administered treatments, and she exhibited significant symptom relief, emphasizing the importance of accurate diagnosis and timely intervention. Lessons This case underscores the imperative for heightened clinical vigilance and thorough differential diagnosis in the face of complex clinical presentations, such as those seen in MELAS syndrome, to ensure timely and appropriate interventions.


Effects of C-reactive protein trajectories of critically ill patients with sepsis on in-hospital mortality rate

September 2023

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46 Reads

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18 Citations

Sepsis, a life-threatening condition caused by an inflammatory response to systemic infection, results in a significant social burden and healthcare costs. This study aimed to investigate the relationship between the C-reactive protein (CRP) trajectories of patients with sepsis in the intensive care unit (ICU) and the in-hospital mortality rate. We reviewed 1464 patients with sepsis treated in the ICU of Dongyang People’s Hospital from 2010 to 2020 and used latent growth mixture modeling to divide the patients into four classes according to CRP trajectory (intermediate, gradually increasing, persistently high, and persistently low CRP levels). We found that patients with intermediate and persistently high CRP levels had the lowest (18.1%) and highest (32.6%) in-hospital mortality rates, respectively. Multiple logistic regression analysis showed that patients with persistently high (odds ratio [OR] = 2.19, 95% confidence interval [CI] = 1.55–3.11) and persistently low (OR = 1.41, 95% CI = 1.03–1.94) CRP levels had a higher risk of in-hospital mortality than patients with intermediate CRP levels. In conclusion, in-hospital mortality rates among patients with sepsis differ according to the CRP trajectory, with patients with intermediate CRP levels having the lowest mortality rate. Further research on the underlying mechanisms is warranted.


Identification of subphenotypes in critically ill thrombocytopenic patients with different responses to therapeutic interventions: a retrospective study

April 2023

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14 Reads

Introduction The causes of thrombocytopenia (TP) in critically ill patients are numerous and heterogeneous. Currently, subphenotype identification is a popular approach to address this problem. Therefore, this study aimed to identify subphenotypes that respond differently to therapeutic interventions in patients with TP using routine clinical data and to improve individualized management of TP. Methods This retrospective study included patients with TP admitted to the intensive care unit (ICU) of Dongyang People’s Hospital during 2010–2020. Subphenotypes were identified using latent profile analysis of 15 clinical variables. The Kaplan–Meier method was used to assess the risk of 30-day mortality for different subphenotypes. Multifactorial Cox regression analysis was used to analyze the relationship between therapeutic interventions and in-hospital mortality for different subphenotypes. Results This study included a total of 1,666 participants. Four subphenotypes were identified by latent profile analysis, with subphenotype 1 being the most abundant and having a low mortality rate. Subphenotype 2 was characterized by respiratory dysfunction, subphenotype 3 by renal insufficiency, and subphenotype 4 by shock-like features. Kaplan–Meier analysis revealed that the four subphenotypes had different in-30-day mortality rates. The multivariate Cox regression analysis indicated a significant interaction between platelet transfusion and subphenotype, with more platelet transfusion associated with a decreased risk of in-hospital mortality in subphenotype 3 [hazard ratio (HR): 0.66, 95% confidence interval (CI): 0.46–0.94]. In addition, there was a significant interaction between fluid intake and subphenotype, with a higher fluid intake being associated with a decreased risk of in-hospital mortality for subphenotype 3 (HR: 0.94, 95% CI: 0.89–0.99 per 1 l increase in fluid intake) and an increased risk of in-hospital mortality for high fluid intake in subphenotypes 1 (HR: 1.10, 95% CI: 1.03–1.18 per 1 l increase in fluid intake) and 2 (HR: 1.19, 95% CI: 1.08–1.32 per 1 l increase in fluid intake). Conclusion Four subphenotypes of TP in critically ill patients with different clinical characteristics and outcomes and differential responses to therapeutic interventions were identified using routine clinical data. These findings can help improve the identification of different subphenotypes in patients with TP for better individualized treatment of patients in the ICU.


Flow chart of the study. ICU, Intensive Care Unit; AKI, acute kidney injury.
Relative influence of each machine learning model in the stacked-ensemble model. SVM, support vector machine; XGBoost, extreme gradient boosting.
Evaluation of model performance in the internal validation dataset. (A) The calibration plot shows the consistency between observed and predicted risks for persistent acute kidney injury. (B) Discrimination of the machine learning models in the internal validation dataset. SVM, support vector machine; XGBoost, extreme gradient boosting; AUC, area under the curve. The number in parentheses indicates the 95% confidence interval.
Variable-importance ranking in the ensemble model. SaO2, Oxyhemoglobin saturation; OP_sbp_avg, average systolic pressure; OP_dbp_min, Minimum diastolic pressure; OP_dbp_max, Maximum diastolic pressure; OP_sbp_min, Minimum systolic pressure.
Model interpretation using the iBreakdown algorithm with uncertainty indicated by a box plot. The horizontal axis reflects the probability scale. SaO2, Oxyhemoglobin saturation; OP_sbp_avg, average systolic pressure; OP_dbp_min, Minimum diastolic pressure; OP_dbp_max, Maximum diastolic pressure; OP_sbp_min, Minimum systolic pressure.
Ensemble machine learning algorithm for predicting acute kidney injury in patients admitted to the neurointensive care unit following brain surgery

April 2023

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53 Reads

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5 Citations

Acute kidney injury (AKI) is a common postoperative complication among patients in the neurological intensive care unit (NICU), often resulting in poor prognosis and high mortality. In this retrospective cohort study, we established a model for predicting AKI following brain surgery based on an ensemble machine learning algorithm using data from 582 postoperative patients admitted to the NICU at the Dongyang People's Hospital from March 1, 2017, to January 31, 2020. Demographic, clinical, and intraoperative data were collected. Four machine learning algorithms (C5.0, support vector machine, Bayes, and XGBoost) were used to develop the ensemble algorithm. The AKI incidence in critically ill patients after brain surgery was 20.8%. Intraoperative blood pressure; postoperative oxygenation index; oxygen saturation; and creatinine, albumin, urea, and calcium levels were associated with the postoperative AKI occurrence. The area under the curve value for the ensembled model was 0.85. The accuracy, precision, specificity, recall, and balanced accuracy values were 0.81, 0.86, 0.44, 0.91, and 0.68, respectively, indicating good predictive ability. Ultimately, the models using perioperative variables exhibited good discriminatory ability for early prediction of postoperative AKI risk in patients admitted to the NICU. Thus, the ensemble machine learning algorithm may be a valuable tool for forecasting AKI.


Comparisons of baseline characteristics of four classes
Comparisons of Site of infection and outcomes of four classes
Logistic regression model for hospital mortality
Effects of C-reactive protein trajectories of critically ill patients with sepsis on in-hospital mortality rate

April 2023

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30 Reads

Sepsis, a life-threatening condition caused by an inflammatory response to systemic infection, results in a significant social burden and healthcare costs. This study aimed to investigate the relationship between the C-reactive protein (CRP) trajectories of patients with sepsis in the intensive care unit (ICU) and the in-hospital mortality rate. We reviewed 1,464 patients with sepsis treated in the ICU of Dongyang People's Hospital from 2010 to 2020 and used latent growth mixture modeling to divide the patients into four classes according to CRP trajectory (intermediate, gradually increasing, persistently high, and persistently low CRP levels). We found that patients with intermediate and persistently high CRP levels had the lowest (18.1%) and highest (32.6%) in-hospital mortality rates, respectively. Multiple logistic regression analysis showed that patients with persistently high (odds ratio [OR] = 2.19, 95% confidence interval [CI] = 1.55–3.11) and persistently low (OR = 1.41, 95% CI = 1.03–1.94) CRP levels had a higher risk of in-hospital mortality than patients with intermediate CRP levels. In conclusion, in-hospital mortality rates among patients with sepsis differ according to the CRP trajectory, with patients with intermediate CRP levels having the lowest mortality rate. Further research on the underlying mechanisms is warranted.



Citations (26)


... Aside from that, the scale of our research population is insufficient, and our mining of the dataset is superficial, clearly lagging behind existing published articles [78]: To start with, we studied the dataset by utilizing a single transcriptomics approach, which may trigger inadequate data analysis, thereby overlooking pivotal details. In contrast, multi-omics joint analysis (transcriptomics-proteomics) can sufficiently mine the information in the dataset. ...

Reference:

CTSO and HLA-DQA1 as biomarkers in sepsis-associated ARDS: insights from RNA sequencing and immune infiltration analysis
Identifying septic shock subgroups to tailor fluid strategies through multi-omics integration

... Given that mitochondria are ubiquitous except in mature erythrocytes, this genetic disorder affects various systems. Mitochondrial disease often affects organs with high energy demands, such as the brain, skeletal muscles, and heart [4][5][6]. Globally, mitochondrial disease affects around 1 in 5000 adults [4,7], yet epidemiological data for China are currently lacking. Common mitochondrial disease forms include mitochondrial myopathy [8], encephalopathy [9], lactic acidosis [5], stroke-like episodes (MELAS) [5], Kearns-Sayre syndrome (KSS syndrome) [10,11], chronic progressive extraocular muscle paralysis (CPEO) [12,13], and Leigh syndrome [14,15]. ...

Prolonged misdiagnosis of mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes syndrome: A case report
  • Citing Article
  • November 2023

Medicine

... CRP levels have been shown to be associated with both COPD exacerbations and mortality in these patients [14][15][16]. In a national clinical study found CRP levels to be significantly associated with exacerbation severity and increased mortality [p < 0.01 for both] [14]. ...

Effects of C-reactive protein trajectories of critically ill patients with sepsis on in-hospital mortality rate

... However, most studies for predicting AKI focus solely on cardiac surgery [15][16][17][18] and cannot be directly applied to patients undergoing noncardiac surgery. Additionally, prior machine learningbased AKI prediction models had several limitations, such as a narrow focus on specific procedures and small sample sizes [19][20][21] , as well as the absence of key variables [10,11] . Furthermore, previous models included numerous features [10,14] , which increased their vulnerability to missing data. ...

Ensemble machine learning algorithm for predicting acute kidney injury in patients admitted to the neurointensive care unit following brain surgery

... Кроме того, в другой китайской провинции, Юньнань, в 2024 г. отмечен третий в мире случай заболевания человека гриппом A(H10N3) [48] (первые два случая также зарегистрированы в КНР в 2021 и 2022 гг. [49]). Широкое распространение вирусов гриппа A(H10Nx), их частая реассортация с вирусами других подтипов, продолжающиеся случаи среди людей и тот факт, что они не подлежат уведомлению по стандартам Всемирной организации здоровья животных [50], требуют от научного сообщества проактивного реагирования. ...

Second Identified Human Infection With the Avian Influenza Virus H10N3: A Case Report
  • Citing Article
  • January 2023

Annals of Internal Medicine

... Preemptive analgesia with butorphanol has been postulated to reduce or eliminate the sensitization of the central nervous system (CNS) caused by tissue injury, by preventing harmful stimulation induced by CNS impulses or by halting CNS excitation prior to feeling pain, so as to achieve a beneficial analgesic effect. [37] At the same time, we observed that the use of butorphanol had no significant adverse effect on the recovery of postpartum uterus. ...

Analgesic efficacy of butorphanol combined with sufentanil after heart valve surgery: A propensity score-matching analysis

Medicine

... Bunlara ek olarak, bu hastalara uygulanan eritrosit transfüzyon (ET), trombosit transfüzyon (TT) ve taze donmuş plazma (TDP) infüzyon oranlarının daha fazla olduğu tespit edilmiştir (3, 6,7,9). Trombositopeni süresi uzayan (> 2 gün), YBÜ yatış süresince trombositopenisi düzelmeyen veya trombositopeni derecesi derinleşen (< 50 x 103/μl) hastalarda organ destek tedavi oranlarının, kan ürünleri transfüzyon sayısının ve ölüm riskinin arttığı da gösterilmiştir (10,11). Bu çalışmanın amacı, üçüncü basmak medikal YBÜ'ye yatışı yapılan kritik hastalarda yatış esnasındaki trombositopeni oranını belirlemektir. ...

Risk of Hospital Mortality in Critically Ill Patients with Transient and Persistent Thrombocytopenia: a Retrospective Study
  • Citing Article
  • December 2022

Shock (Augusta, Ga.)

... Our research contributes to the knowledge regarding the prognostic value of platelet counts in sepsis, echoing findings that associate thrombocytopenia with septic conditions 20,21 . However, it is important to note that our findings showed some divergence from established literature regarding platelet values. ...

Prediction Models for Sepsis-Associated Thrombocytopenia Risk in Intensive Care Units Based on a Machine Learning Algorithm

... 4 presenting as heart failure. There have been reports [5][6][7][8] of pheochromocytoma presenting as the gamut of manifestations like cardiomyopathy, myocarditis, and circulatory collapse, which requires timely diagnosis and emergency management to avoid cardiovascular collapse. ...

Pheochromocytoma-related cardiomyopathy presenting as acute myocardial infarction: A case report

Medicine

... Cardiac patients may manifest typical symptoms such as dyspnea, cough and fatigue during excessive exercise [2]. Many develop complications that evolve into acute cardiogenic pulmonary edema, necessitating the use of MV [3,4]. From this, physiotherapy acts with techniques aiming to reduce lung injuries and clear airways [5]. ...

Unilateral cardiogenic pulmonary edema caused by acute mitral valve prolapse: A case report

Medicine