W.-H. Soe’s research while affiliated with French National Centre for Scientific Research and other places

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Publications (14)


Transmission of Rotational Motion Between Molecule-Gears
  • Chapter

September 2020

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14 Reads

W.-H. Soe

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S. Srivastava

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C. Joachim

A molecule-gear rotating without a lateral jittering effect is constructed using a single copper adatom as a physical axle on a lead superconducting surface. The molecule-gear has a diameter of 1.2 nm with 6 tert-butyl-teeth. It is mounted on this Cu axle using the atom/molecule manipulation capability of a low temperature scanning tunneling microscope (LT-STM). Transmission of rotational motions between 2 molecule-gears, whose axles have to be exactly 1.9 nm separated, is functioning when this train of molecule-gears is completed with a molecule-handle. To manipulate the molecule-handle laterally, the first molecule-gear of the train directly entangled with the molecule-handle is step by step rotated around its Cu adatom axle. It drives the second molecule-gear mechanically engaged with the first gear to rotate like along a train of macroscopic solid-state gears. Such rotation transmission is one of the most basic function for the future construction of a complex molecular machinery.


A Simple Example of a Molecule-Gear Train: PF3 Molecules on a Cu(111) Surface

September 2020

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36 Reads

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1 Citation

A train of molecule gears consisting of PF3 molecules was studied using semi-empirical ASED+ method to explore the mechanism of rotational transmission along this train. It was observed that a unidirectional rotational transmission occurs between only the first two PF3 molecules for a PF3 molecule train up to six molecule-gears, the four PF3 molecules at the end of the train being used to rigidify the rotation axle of the first two PF3. This demonstrates that in a train of molecule-gears, the rotation of each molecule is resulting from a collective action of many degrees of freedom per molecule. This collective motion is rather fragile against many others possible minimum energy trajectories which can develop on the multidimensional ground state potential energy surface of a molecule-gear train to respond to the increase of the potential energy required to rotate the first molecule-gear of the train.


On-Surface Atom by Atom Assembled Aluminium Bi-Nuclear Tetrabenzophenazine Organo-Metallic Magnetic Complex

December 2019

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18 Reads

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8 Citations

Nano Letters

We Hyo Soe

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Carlos Manzano

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[...]

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Christian Joachim

The Kondo effect results from the interactions of the conduction electrons in a metal bulk with localized magnetic impurities. While adsorbed atop a metallic surface, the on-surface nanoscale version of this effect is observed when a single magnetic atom or a single magnetic molecule (SMM) is interacting with the conduction electrons. SMM are commonly organo-metallic complex incorporating transition metal atoms in different oxidation states. We demonstrate how a single non-magnetic neutral tetrabenzo[a,c,j,h]phenazine molecule can be on-surface coordinated with exactly two aluminum metal atoms (Al(III) oxidation state on the Au(111) surface) by low-temperature scanning tunneling microscope (LT-STM) single atom manipulation. It results a Kondo measurable localized molecular magnetic moment. This opens a new way to design SMM complex without the need of heavy transition metal atom and complex ligand to stabilize the molecular coordination sphere.


A Train of Single Molecule-Gears

October 2019

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28 Reads

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42 Citations

The Journal of Physical Chemistry Letters

Two molecule-gears, 1.2 nm in diameter with 6 teeth, are mounted each on a single copper ad-atom separated exactly by 1.9 nm on a lead surface using a low temperature scanning tunneling microscope (LT-STM). A functioning train of 2 molecule-gears is constructed completed with a molecule-handle. Not mounted on a Cu ad-atom axle, this ancillary molecule-gear is mechanically engaged with the first molecule-gear of the train to stabilize its step by step rotation. Centered on its Cu ad-atom axle, the rotation of the first gear of the train step by step rotates the second similar to a train of macroscopic gears. From the handle to the first and to this second molecule-gear, the exact positioning of the two Cu ad-atom axles on the lead surface ensures that the molecular teeth to teeth mechanics is fully reversible.


The chemical skeleton (left) and three possible optimized conformations of the free PAH-4W molecule using the MOPAC package [19]. The central molecular chassis is in blue with a ‘1’ and the four triptycene molecular wheels in red (the chemical group marked with a ‘2’). Optimized structure (i) is showing how the four triptycene wheels are pushed down the chassis through a steric saddle shape chassis structure, with four wheels down and four tert-butyl groups up, due to deformation induced by the presence of two five-membered rings on the central part of the chassis. In the case of other optimized structure (ii) (or (iii), not found experimentally), the deformation occurs in three wheels and 1 tert-butyl group (two wheels and 2 tert-butyl groups respectively) up and one wheel and 3 tert-butyl groups (two wheels and 2 tert-butyl groups) down.
Typical STM images just after the molecule sublimation process. Since intact PAH-4W molecules are mainly stabilized at the step edges, the probability of finding molecules decreases inversely to the terrace width. Only one intact molecule was found in top STM image area (1 molecule per 5000 nm²) by comparison with two intact molecules in bottom-left image (1 molecule per 1800 nm²). Bottom right image series shows a sequence of two lateral manipulations to detach the molecule from its initial step edge. First image of the series is corresponding to the dotted area of the large bottom-left STM image. All images were taken with tunnel current I = 10 pA and bias voltage V = 200 mV. Lateral mechanical manipulation condition for the right series: I = 10–20 nA with V = 50 mV.
(a) Typical scanning tunneling dI/dV spectra recorded at slightly different tip locations on the molecule chassis but near the wheel. The corresponding low voltage experimental image is presented also in (a) with the location of the tip during spectroscopic measurements indicated as blue and red spots (corresponding to the blue and red curves, respectively). The corresponding dI/dV ESQC calculated image is presented in (a). Three distinct peaks are observed and identified by vertical dotted lines. One at positive corresponds to the first virtual reduced state and two at negative bias voltage corresponding to the first and second virtual oxidation states contributing to the tunneling current. (b) The experimental differential conductance (dI/dV) maps recorded at the bias voltage identified in (a) (they realize a projection of the PAH-4W electronic probability density of these molecular electronic states on a two dimensional plane). In order to determine the main mono-electronic molecular orbitals entering the multi-electron virtual states mentioned above and contributing to the experimentally observed electronic probability density maps, molecular orbitals of the free PAH-4W are represented at the bottom row (c) and were calculated using the semi-empirical PM7-MOPAC package [19]. Notice that the electron density of not only HOMO and LUMO but also up to HOMO-7 crowds into the chassis. The first mono-electronic state located on a wheel is arising at HOMO-8. The 4 wheel states are electronically separated from each other and can be found between HOMO-8 to HOMO-11. Only one was represented in (c). Images sizes are 4 nm × 4 nm for topographic image and 5 nm × 5 nm for dI/dV maps.
(a) An STM image of the PAH-4W having the conformation presented in figure 1(ii). Here the bottom-left tert-butyl group shows a relatively smaller lobe than the other three tert-butyl because it is down sideways and is related to the lift up of the neighboring bottom-left wheel. No significant difference in contrast between this wheel and the other three in the constant current image. (b) A real time recording of the tunneling current at V = 3.2 V measured for the tip located on the lifted up wheel edge indicated by the red dot in (a). The current is fluctuating between 10 and 85 pA because of the random oscillations of this wheel. (Constant current image (a): I = 10 pA and bias voltage V = 200 mV).
Typical tip height variations during an STM constant current lateral mechanical molecule manipulation with tip trajectory indicated on the images before (left) and after (right) manipulation. The manipulation signal coming from down left wheel can be separated in four sequences; (sequence (i), blue background) 0.0 → 2.0 nm, the molecule was pulled apart from step edge leading to the highest mechanical interaction location of the tip apex with the molecule. This is the location of the corresponding wheel shaft, on the bottom-left wheel in this case. (Sequence (ii), green) 2.0 → 3.4 nm, the molecule was manipulated by normal mechanical pushing mode characterized by a 0.28 nm period signal, which coincides approximately with the nearest neighbor interatomic distance on the Au(111) surface. (Sequence (iii), pink) 3.4 → 3.7 nm, the wheel is interacting with the herringbone ridge and is responsible for the main manipulation signal jump. (Sequence (iv), green) 3.7 → 5.2 nm, the molecule was manipulated the same way as compared to sequence (ii) (constant current images: I = 10 pA and bias voltage V = 200 mV).

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Surface manipulation of a curved polycyclic aromatic hydrocarbon-based nanovehicle molecule equipped with triptycene wheels
  • Article
  • Publisher preview available

October 2018

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64 Reads

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12 Citations

With a central curved chassis, a four wheels molecule-vehicle was deposited on an Au(111) surface and imaged at low temperature using a scanning tunneling microscope. The curved conformation of the chassis and the consequent moderate interactions of the four wheels with the surface were observed. The dI/dV constant current maps of the tunneling electronic resonances close to the Au(111) Fermi level were recorded to identify the potential energy entry port on the molecular skeleton to trigger and control a driving of the molecule. A lateral pushing mode of molecular manipulation and the consequent recording of the manipulation signals confirm how the wheels can step by step rotate while passing over the Au(111) surface native herringbone reconstructions. Switching a phenyl holding a wheel to the chassis was not observed for triggering a lateral molecular motion inelastically and without any mechanic push by the tip apex. This points out the necessity to encode the sequence of the required wheels action on the profile of potential energy surface of the excited states to be able to drive a molecule-vehicle.

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Long Starphene Single Molecule NOR Boolean Logic Gate

April 2018

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46 Reads

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18 Citations

Surface Science

Using a low temperature scanning tunneling microscope (LT-UHV-STM), local electronic tunneling spectroscopy and differential conductance mapping are performed to investigate how by extending one phenyl more each branch of the conjugated board of a trinaphthylene starphene molecule, the corresponding longer trianthracene starphene new molecule is functioning like a NOR Boolean logic gate according to a Quantum Hamiltonian Computing (QHC) design. Here the STM tip is used to manipulate single Au atoms one at a time for contacting a trianthracene molecule. Each Au atom is acting like a classical digital input on the molecule encoding for a logical “0'' when the atom is not interacting with the trianthracene input branch and for a logical “1'' when interacting. The inputs are converted in quantum information inside the trianthracene molecule and the logical output status available on the output branch. QHC is demonstrated to be robust since quantum information transfer can be used on the long range along the trianthracene for the NOR logic gate to function properly as compared to the shorter trinaphthylene molecule.



Manipulation of a single molecule ground state by means of gold atom contacts

September 2013

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151 Reads

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7 Citations

Chemical Physics Letters

a b s t r a c t Single gold adatoms were manipulated on a Au(1 1 1) surface with the tip of a scanning tunnelling microscope to contact selected peripheral p bonds of a single Coronene molecule. Tunnelling electron spectroscopy and differential conductance mapping of the Au–Coronene complexes show how Coron-ene's electronic ground state is shifted down in energy as the function of the number of interacting Au atoms, demonstrating that a Coronene molecule can function like a single molecule counter. The number of interacting atoms can be counted by simply following the linear energy downshift of Coronene's ground state. Ó 2013 Elsevier B.V. All rights reserved.


High Voltage STM Imaging of Single Copper Phthalocyanine

August 2013

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16 Reads

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1 Citation

In this chapter experiments done to investigate the scanning tunneling microscope (STM) imaging at near field emission voltages of single Copper Phthalocyanine (CuPc) molecules deposited on Au(111) are presented. An imaging bias voltage range is explored exceeding the standard tunneling imaging conditions going from the threshold of the tunneling junction barrier up to −10.0 V. At this voltage regime current transmitted through the tip-molecule–substrate junction is made not only of tunneling electrons but also of electrons overcoming the tunneling barrier and behaving like free electrons. Our interpretation of the process, enabling the visualization of the electronic cloud of single organic molecules under these conditions, is presented.


Mapping the first electronic resonances of a Cu phthalocyanine STM tunnel junction

September 2012

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16 Reads

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19 Citations

Using a low temperature, ultrahigh vacuum scanning tunneling microscope (STM), dI/dV differential conductance maps were recorded at the tunneling resonance energies for a single Cu phthalocyanine molecule adsorbed on an Au(111) surface. We demonstrated that, contrary to the common assumption, such maps are not representative of the molecular orbital spatial expansion, but rather result from their complex superposition captured by the STM tip apex with a superposition weight which generally does not correspond to the native weight used in the standard Slater determinant basis set. Changes in the molecule conformation on the Au(111) surface further obscure the identification between dI/dV conductance maps and the native molecular orbital electronic probability distribution in space.


Citations (11)


... Over the past decades, the rapid developments of science and technology have allowed people to explore the quantum world. Research on quantum impurity systems (QIS) has become a significant subject and has received extensive attention for its widespread applications in physics [1,2] , chemistry [3][4][5][6] , nanoelectronics [7,8] , quantum information processing [9,10] , spintronics [11,12] , and quantum computation [13,14] . ...

Reference:

Recent advances in fermionic hierarchical equations of motion method for strongly correlated quantum impurity systems
On-Surface Atom by Atom Assembled Aluminium Bi-Nuclear Tetrabenzophenazine Organo-Metallic Magnetic Complex
  • Citing Article
  • December 2019

Nano Letters

... [18] Using an anchoring group to pin individual gears at precise interlocking distances is the key to overcoming this problem. This concept has been applied to the same molecule mounted on a Cu adatom, which acts as an atomic scale axle allowing precise positioning of the cogwheels on a Pb(111) surface [19] resulting in the transfer of a rotational motion from one molecule to the next. However, the transfer of rotation to a third molecule proved unsuccessful due to the fragility of the supramolecular anchoring structure. ...

A Train of Single Molecule-Gears
  • Citing Article
  • October 2019

The Journal of Physical Chemistry Letters

... [21c] A left-handed helical molecule rotates preferentially in the opposite direction to its equivalent right-handed helical molecule. Tert-butyl groups have also been introduced to increase organic solubility of the target molecule and to allow for easier observation by STM techniques, [24] where they are known to induce good contrast in the imaging. Since this metallo-organic anchoring subunit can be repositioned at will on the surface by pushing with the apex of a STM tip, it is envisioned to build a train of molecular gears with a tunable number of successive cogwheels, having precise control over their chirality. ...

Surface manipulation of a curved polycyclic aromatic hydrocarbon-based nanovehicle molecule equipped with triptycene wheels

... 40 Here, the BBD molecule must be manipulated with care not to open a conformation change path on its reduced state potential energy surface nor a chemical reaction path breaking some of its chemical bonds leading to the final destruction of the molecule since a molecule is often very unstable under high positive STM bias voltage pulses. 7,41 While exciting the BBD molecule at two different spatial locations of the same resonance maxima, the difference of mechanical response is a nice indication of how the electronic coupling between the tip apex and the electronic states of a molecule can give rise to different mechanical responses. Here and during an STM excitation (or imaging), the effective lateral extension of the tunneling electrons inelastic excitation is much narrower than the BBD molecular orbitals spatial lateral extension. ...

High Voltage STM Imaging of Single Copper Phthalocyanine
  • Citing Chapter
  • August 2013

... With the persistent and rapid development of STM manipulation, its application has been greatly extended from arranging the adsorbates in a desired manner to managing singlemolecule chemistry, such as inducing 1) intramolecular confor-mational changes; [15][16][17][18][19][20] 2) intermolecular covalent interactions by coupling two molecules in a controlled step-by-step way; [21] 3) single-molecule isomerization including cis-trans transition of azobenzene, [22][23][24] tautomerization of melamine, [25] isomerization of single chlorobenzene and its analogues, [26,27] and tautomerization of single free-base naphthalocyanine and porphycene molecules; [28,29] and 4) metal-organic complexes including metal-aromatic binding on single-crystal surfaces, [30][31][32] K atoms attaching to C 60 molecules, [33] hybrid magnetic complexes of V atoms and tetracyanoethylene ligands, [34] and metal-ligand interactions on insulating films. [35][36][37] Moreover, the dynamic behaviors of the adsorbates on surfaces could also be controlled by STM manipulations. ...

Manipulation of a single molecule ground state by means of gold atom contacts

Chemical Physics Letters

... of the channel, and the drain and source to have a greater influence, resulting in lower voltage and increased leakage. Therefore, digital circuit designers should consider adopting new technologies that overcome the challenges in COMS [1][2][3][4]. In chemistry, a dangling bond refers to an incomplete charge within an atom, and an atom with a dangling bond is called an immobile free radical. ...

Demonstration of a NOR logic gate using a single molecule and two surface gold atoms to encode the logical input

Physical review. B, Condensed matter

... Therefore, every four dimers on two adjacent rows easily form a stable structure, which is the well-known c(4×2) reconstruction. The c(4×2) reconstruction pattern was found to be dominant (50-60% at room temperature) and stable, consistent with the experiment by Manzano et al. [9]. Therefore, the Si(100)-c(4×2) surface is taken as the most appropriate and applicable research object for DA on the silicon surface. ...

Origin of the apparent (2× 1) topography of the Si (100)-c (4× 2) surface observed in low-temperature STM images
  • Citing Article
  • May 2011

Physical review. B, Condensed matter

... We speculate that splitting of LUMO states of tilted molecules arises from the breaking of intrinsic symmetry of picene molecules driven by the molecule-substrate interaction. 16,31 The dI/dV spectrum for the upright-standing molecules in the crystalline (001) monolayer is shown in Fig. 6(b). It is found that the HOMO and LUMO peaks appear at −2.3 eV and +2.5 eV, respectively. ...

Mapping the first electronic resonances of a Cu phthalocyanine STM tunnel junction
  • Citing Article
  • September 2012

... Unfortunately, when working with a pair of molecules, all attempts to transfer rotation between them proved unsuccessful as the molecules preferred to diffuse apart. [18] Using an anchoring group to pin individual gears at precise interlocking distances is the key to overcoming this problem. This concept has been applied to the same molecule mounted on a Cu adatom, which acts as an atomic scale axle allowing precise positioning of the cogwheels on a Pb(111) surface [19] resulting in the transfer of a rotational motion from one molecule to the next. ...

Step-by-step rotation of a molecule-gear mounted on an atomic-scale axis
  • Citing Article
  • August 2009

Nature Materials