Valerie A. Kuhlmeier’s research while affiliated with Queen's University and other places

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Publications (12)


Study design and the relative abundance of GM bacterial families across timepoints. (A) Illustration of our 15-month longitudinal study design. The social living manipulation phases are denoted by gray boxes and labels. The data collection sessions during these living conditions are identified with downward pointing arrows and different coloured bubbles (red: T1Single, light blue: T2Single, light green: T3Social, dark green: T4Social, dark blue: T5RSL). Diet manipulation is indicated at the top with bars and labels: “Uncontrolled diet” and “Controlled diet”. (B) Average relative abundance of the 10 most abundant GM bacterial families across all timepoints and animals
Changes in diet result in changes in GM composition. (A) Chao1 alpha diversity differs significantly between the diet-uncontrolled condition (red, T1Single) and the diet-controlled condition (light blue, T2Single), * p < .05. In the boxplots, the ends of the boxes denote the first (25%) and third (75%) quartiles, the center line represents the median, and the whiskers represent the range of values falling within the interquartile range (IQR) x 1.5. Single black data points represent individuals. (B) NMDS plot with weighted UniFrac distances depicting the effect of diet on GM diversity. Diet-uncontrolled condition (red, T1Single) is significantly different from diet-controlled condition (light blue, T2Single), p < .001. (C) Differential relative abundance of bacterial families exhibiting the diet effect. LEfSe analysis identified 10 bacterial families that significantly changed between diet-uncontrolled (red, T1Single) and diet-controlled (light blue, T2Single) conditions. In the horizontal boxplots, the ends of the boxes denote the first (25%) and third (75%) quartiles, the center line represents the median, and the whiskers represent the range of values falling within the interquartile range (IQR) x 1.5. Single black data points represent individuals outside this range
Changes in social living conditions result in changes in GM composition. (A) Chao1 alpha diversity did not differ across our diet-controlled, social living conditions. In the boxplots, the ends of the boxes denote the first (25%) and third (75%) quartiles, the center line represents the median, and the whiskers represent the range of values falling within the interquartile range (IQR) x 1.5. Single black data points represent individuals. (B) NMDS plot with weighted UniFrac distances depicting the effect of social living on beta diversity. A significant effect due to changes in social living conditions was detected via PERMANOVA analysis, p < .05. (C) Differential relative abundance of bacterial families for the effect of social living. Our LEfSe analysis identified 2 bacterial families, Lactobacillaceae and Clostridiaceae, that significantly changed across our social living conditions. In the horizontal boxplots, the ends of the boxes denote the first (25%) and third (75%) quartiles, the center line represents the median, and the whiskers represent the range of values falling within the interquartile range (IQR) x 1.5. Single black data points represent individuals outside that range
Lactobacillaceae and Clostridaceae appear to be equally modulated by a change in diet and a change in social living conditions. (A) Changes in the relative abundance of Lactobacillaceae across all timepoints. Wilcoxon signed-rank tests were conducted across all timepoints to identify differences between timepoints, as indicated by significance bars. Data points indicate the values for individual animals. Bars denote the average relative abundance for each timepoint. The pink and blue lines to the left and right of T2Single, respectively, highlight the change in relative abundance from T1Single to T2Single (effect of diet) and T2Single to T3Social (effect of moving from single to pairwise living). The inset graph at the top right denotes absolute differences in the relative abundance change from T1Single to T2Single (pink) and T2Single to T3Social (blue). Bars indicate the mean values for each group. Data points indicate the absolute values of change across the respective timepoints for each animal. * p < .05, ** p < .001, ns = non-significant. (B) Changes in the relative abundance of Clostridiaceae across all timepoints. This figure is set up in the same manner as (A)
Changes in social environment impact primate gut microbiota composition
  • Article
  • Full-text available

November 2024

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106 Reads

Animal Microbiome

Colleen S. Pearce

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Danielle Bukovsky

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Katya Douchant

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[...]

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Background The gut microbiota (GM) has proven to be essential for both physical health and mental wellbeing, yet the forces that ultimately shape its composition remain opaque. One critical force known to affect the GM is the social environment. Prior work in humans and free-ranging non-human primates has shown that cohabitation and frequent social interaction can lead to changes in GM composition. However, it is difficult to assess the direction of causation in these studies, and interpretations are complicated by the influence of uncontrolled but correlated factors, such as shared diet. Results We performed a 15-month longitudinal investigation wherein we disentangled the impacts of diet and social living conditions on GM composition in a captive cohort of 13 male cynomolgus macaques. The animals were in single housing for the first 3 months of the study initially with a variable diet. After baseline data collection they were placed on a controlled diet for the remainder of the study. Following this diet shift the animals were moved to paired housing for 6 months, enabling enhanced social interaction, and then subsequently returned to single housing at the end of our study. This structured sequencing of diet and housing changes allowed us to assess their distinct impacts on GM composition. We found that the early dietary adjustments led to GM changes in both alpha and beta diversity, whereas changes in social living conditions only altered beta diversity. With respect to the latter, we found that two particular bacterial families — Lactobacillaceae and Clostridiaceae — demonstrated significant shifts in abundance during the transition from single housing to paired housing, which was distinct from the shifts we observed based on a change in diet. Conversely, we found that other bacteria previously associated with sociality were not altered based on changes in social living conditions but rather only by changes in diet. Conclusions Together, these findings decouple the influences that diet and social living have on GM composition and reconcile previous observations in the human and animal literatures. Moreover, the results indicate biological alterations of the gut that may, in part, mediate the relationship between sociality and wellbeing.

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Figure 1
Figure 2 Experimenter in Resting Position, Sitting on their Legs with their Hands by the Sides of the Thighs, and Looking Down
Figure 4
Figure S2
ManyDogs 1: A Multi-Lab Replication Study of Dogs’ Pointing Comprehension

August 2023

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488 Reads

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8 Citations

Animal Behavior and Cognition

To promote collaboration across canine science, address replicability issues, and advance open science practices within animal cognition, we have launched the ManyDogs consortium, modeled on similar ManyX projects in other fields. We aimed to create a collaborative network that (a) uses large, diverse samples to investigate and replicate findings, (b) promotes open science practices of pre-registering hypotheses, methods, and analysis plans, (c) investigates the influence of differences across populations and breeds, and (d) examines how different research methods and testing environments influence the robustness of results. Our first study combines a phenomenon that appears to be highly reliable—dogs’ ability to follow human pointing—with a question that remains controversial: do dogs interpret pointing as a social communicative gesture or as a simple associative cue? We collected data (N = 455) from 20 research sites on two conditions of a 2-alternative object choice task: (1) Ostensive (pointing to a baited cup after making eye-contact and saying the dog’s name); (2) Non-ostensive (pointing without eye-contact, after a throat-clearing auditory control cue). Comparing performance between conditions, while both were significantly above chance, there was no significant difference in dogs’ responses. This result was consistent across sites. Further, we found that dogs followed contralateral, momentary pointing at lower rates than has been reported in prior research, suggesting that there are limits to the robustness of point-following behavior: not all pointing styles are equally likely to elicit a response. Together, these findings underscore the important role of procedural details in study design and the broader need for replication studies in canine science.


Animals Helping Animals: How Dog Detectives Can Help Save Endangered Species

July 2023

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83 Reads

Frontiers for Young Minds

Dogs are working alongside humans to help protect animals in the wild that are endangered. People who work in the field of animal conservation can train dogs to use their powerful noses to sniff out where certain endangered species have been. Dogs help their human handlers by finding the scat (poop!) that members of an endangered species have left behind. Scat contains important information about these species that help us preserve their populations. In this article, you will learn why some animals are endangered, why studying scat is so important, and how teams of dogs and humans can work together to find scat.


A survey on the challenges, limitations, and opportunities of online testing of infants and young children during the COVID-19 pandemic: using our experiences to improve future practices

June 2023

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47 Reads

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2 Citations

In developmental psychology, the widespread adoption of new methods for testing children does not typically occur over a matter of months. Yet, the COVID-19 pandemic and its associated social distancing requirements created a sudden need among many research groups to use a new method with which they had little or no experience: online testing. Here, we report results from a survey of 159 researchers detailing their early experiences with online testing. The survey approach allowed us to create a general picture of the challenges, limitations, and opportunities of online research, and it identified aspects of the methods that have the potential to impact interpretations of findings. We use the survey results to present considerations to improve online research practices.




Figure 2 398 Experimenter in resting position, sitting on their legs with their hands by the sides of the thighs, 399 and looking down. 400
Figure 4 810
Figure S5 1893
Figure S10 2142 Overall side bias. 2143
Results of GLMM of the dogs' choice performance 826
ManyDogs 1: A multi-lab replication study of dogs' pointing comprehension

May 2023

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504 Reads

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2 Citations

To promote collaboration across canine science, address replicability issues, and advance open science practices within animal cognition, we have launched the ManyDogs consortium, modeled on similar ManyX projects in other fields. We aimed to create a collaborative network that (a) uses large, diverse samples to investigate and replicate findings, (b) promotes open science practices of pre-registering hypotheses, methods, and analysis plans, (c) investigates the influence of differences across populations and breeds, and (d) examines how different research methods and testing environments influence the robustness of results. Our first study combines a phenomenon that appears to be highly reliable—dogs’ ability to follow human pointing—with a question that remains controversial: do dogs interpret pointing as a social communicative gesture or as a simple associative cue? We collected data (N = 455) from 20 research sites on two conditions of a 2-alternative object choice task: (1) Ostensive (pointing to a baited cup after making eye-contact and saying the dog’s name); (2) Non-ostensive (pointing without eye-contact, after a throat-clearing auditory control cue). Comparing performance between conditions, while both were significantly above chance, there was no significant difference in dogs’ responses. This result was consistent across sites. Further, we found that dogs followed contralateral, momentary pointing at lower rates than has been reported in prior research, suggesting that there are limits to the robustness of point-following behavior: not all pointing styles are equally likely to elicit a response. Together, these findings underscore the important role of procedural details in study design and the broader need for replication studies in canine science.


The four prosocial problems. In the object-centred helping task (A), the experimenter spilled a bucket of Lego bricks. In the social-centred helping task (B), she struggled to reach a sticker on the back of her jacket. In the object-centred comforting task (C), she showed distress after discovering a rip in the leg of her favourite toy. In the social-centred comforting task (D), she hit her knee on a doorframe and sat down in pain. Illustrations by Sylvia Pinheiro.
Observed level of engagement in the prosocial tasks. Children’s responses to the four prosocial tasks categorized by level of engagement. Non-prosocial responses include: no response, an empty verbal response, and a concerned response. Prosocial responses include: verbal or physical intervention without approaching the experimenter, and physical intervention with approach. Note that children could not approach the experimenter to help in the object-centred task.
Spontaneity of Prosocial Responses.
Examining the influence of shyness on children’s helping and comforting behaviour

February 2023

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102 Reads

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3 Citations

Introduction Shy children, who tend to feel anxious around others and withdraw from social interactions, are found to be less prosocial than their not-shy peers in some studies, though not in others. To examine the contexts in which shy children may be more or less likely to engage in prosocial behaviour, we compared children’s willingness and ability to intervene during in-person tasks that differed in socialengagement demands and complexity, factors that have been conflated in past research. Methods We presented 42, 3.5- to 4.5-year-old children with prosocial problems that varied, in a 2 x 2 within-subjects design, by the type of intervention required (i.e., simple helping or complex comforting) and the source of the problem (i.e., social: within the experimenter’s personal space; or object: a target object distanced from her). Results Most of the children acted prosocially, with little prompting, in the two helping tasks and in the object-centered comforting task. In contrast, fewer than half of the children acted prosocially in the social-centered comforting task. Shyer children were not less likely to intervene in any of the four tasks, but they were slower to intervene in the object-centred comforting task, in which the experimenter was upset about a broken toy. Discussion Thus, providing social-centered comfort to a recently-introduced adult is challenging for young children, regardless of shyness, though shy children do show hesitancy with object-centered comforting. Further, these findings provide insights into the methodological challenges of disentangling children’s prosocial motivation and understanding, and we propose solutions to these challenges for future research.


An overview of creative commons (CC) license types, with implications and considerations for users in comparison to traditional scholarly publishing. This figure is adapted for use from CC, https://creativecommons.org/about/cclicenses/. This figure is available for download at https://osf.io/pnw9x/.
Model for attributing adopted and adapted Open Educational Resources (OER). This figure is available for download at https://osf.io/pnw9x/.
The importance of copyright and shared norms for credit in Open Educational Resources

January 2023

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63 Reads

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6 Citations

Open Educational Resources (OER) are reducing barriers to education while allowing creators the opportunity to share their work with the world and continue owning copyright of their work. To support new authors and adaptors in the OER space, we provide an overview of common considerations that creators and adaptors of OER should make with respect to issues related to copyright in the context of OER. Further, and importantly, a challenge in the OER space is ensuring that original creators receive appropriate credit for their work, while also respecting the credit of those who have adapted work. Thus, in addition to providing important considerations when it comes to the creation of open access works, we propose shared norms for ensuring appropriate attribution and credit for creators and adaptors of OER.



Citations (8)


... This consortium actively fosters a diverse community and formalizes a transparent and equitable process for engaging in multi-site collaborative projects related to canine behavior and cognition. In the first ManyDogs study-named Many-Dogs 1 (ManyDogs Project et al., 2023b), we investigated a question of theoretical importance in canine science: Do dogs act on human pointing signals as though they are communicative social cues? Domestic dogs (Canis familiaris) have become a popular animal model for investigating behavioral and cognitive evolution due to their shared ecological niche with humans and because they are plentiful, easyto-access research subjects in many parts of the world. ...

Reference:

Data from ManyDogs 1
ManyDogs 1: A Multi-Lab Replication Study of Dogs’ Pointing Comprehension

Animal Behavior and Cognition

... Finally, since this study is, to our knowledge, among the first to use online data collection in an imitation paradigm, we would like to end by providing some notes that could help future application of such methods. The present study, and several other developmental psychology studies during the COVID-19 pandemic [e.g., 146], was initially designed for in-lab research and later adapted to online testing. We conducted this study via Zoom due to its availability and popularity during lockdown. ...

A survey on the challenges, limitations, and opportunities of online testing of infants and young children during the COVID-19 pandemic: using our experiences to improve future practices

... Afterward, we assessed the impact of (in)considerate behavior on children's social preferences: Children indicated how much they liked each peer, and who they wanted to collaborate with. For our preregistered analyses, we hypothesized that children would like and would want to collaborate more with considerate rather than inconsiderate peers (Fujisawa et al., 2008;Gill et al., 2023;Kuhlmeier et al., 2020;Lee & Warneken, 2020;Malti et al., 2016;McDonald et al., 2023;Sierksma et al., 2022;Vaish et al., 2009;Van de Vondervoort & Hamlin, 2017;Warneken & Tomasello, 2013;Zhao et al., 2021). Data were collected in 2022 and 2023, and studies were approved by the ethical board of the university where the research was conducted (i.e., Vaste Commissie Wetenschap en Ethiek (VCWE) of the Vrije Universiteit Amsterdam; VCWE-2022-046; VCWE-2022-148; VCWE-2023-106). ...

Selective Prosocial Behavior in Early Childhood
  • Citing Chapter
  • August 2020

... In our study, dogs responded to spoken or pressed food-related and outside-related words with contextually appropriate responses slightly more often than expected by chance. The accuracy of dog's responses in our study is comparable to dogs' accuracy in responding to human pointing [24]. However, dogs are capable of much greater accuracy when purposely trained to respond to stimuli, as is the case for dogs trained to detect wildlife [25], individual people [26], and chemical substances [27,28] through scent. ...

ManyDogs 1: A multi-lab replication study of dogs' pointing comprehension

... Our analysis of data gleaned from the internet can be viewed as a "next-gen" natural history study (Tosa et al., 2021), in this case of cats on social media, where we extrapolate patterns from observable variation in cat behavioral responses. Even with the limitations of gleaning data from social media, this study analyzed over 200 cats, which points to the potential power of citizen cognitive science (e.g., Smith et al., 2021;Stewart et al., 2015), which may be comparable to other "big team" research projects such as the ManyDogs Project (ManyDogs Project et al., 2023). Furthermore, social media videos provide continuous recordings and the ability to revisit recorded events, which can provide advantages over other sampling methods (Brereton et al., 2022). ...

ManyDogs Project: A Big Team Science Approach to Investigating Canine Behavior and Cognition

Comparative Cognition & Behavior Reviews

... Because inhibited/shy children share a similar physiological, neural, and cognitive profiles with those who have social anxiety (Pérez-Edgar & Guyer, 2014), inhibited/shy children may find it difficult to regulate their overplayed physiological systems (Kagan et al., 1988) and overcome their attention biases to threat (e.g., negative evaluations from others; Rubin et al., 2009). Therefore, approaching others and engaging in prosocial acts may be arduous for these children who are physiologically underprepared for interacting with others (see Karasewich et al., 2023). ...

Examining the influence of shyness on children’s helping and comforting behaviour

... Norris and colleagues' research recognizes the interplay between copyright law and OER. As a result, they argue that recognition of the contributions of the original creator of a work should be maintained, even if the work undergoes some changes as a result of OER (Norris et al., 2023). While OER and copyright law can co-exist, Nick Scharf explored the tension between copyright law and Creative Commons (CC). ...

The importance of copyright and shared norms for credit in Open Educational Resources

... Gernsbacher et al. (2008, p. 42) claim that by "turning their heads in the direction of another person's point", infants wind up in joint attention with the person who pointed. Although less widespread than gaze-following, following another's deictic gestures is also not human-unique (see McCreary et al. 2023, for a metaanalytic review). Dogs, for example, look to where humans point with some reliability (Kaminski & Nitschner, 2013), as do enculturated apes (Moore, 2013). ...

Following the human point: Research with nonhuman animals since Povinelli, Nelson, and Boysen (1990)
  • Citing Article
  • September 2022

Learning & Behavior