V. M. Zakharov’s research while affiliated with Koltzov Institute of Developmental Biology and other places

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Publications (21)


Developmental Noise, Entropy, and Biological System Condition
  • Article

August 2024

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25 Reads

Biosystems

Vladimir M Zakharov

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Ilya E Trofimov



Homeostatic Mechanisms of Biological Systems: Prolegomena

May 2023

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24 Reads

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1 Citation

Izvestiia Akademii nauk. Seriia biologicheskaia / Rossiiskaia akademiia nauk

The stability of biological systems ensures their viability under the influence of environmental factors. The homeostatic mechanisms of the body ensure the stability of the process of individual development (developmental homeostasis, or homeoresis). The stability of biosystems of a higher rank is determined by the diversity and stability of the constituent elements. New opportunities for the implementation of homeostatic mechanisms appear at the level of society.


Developmental Stability, Population Dynamics and Climate Change, with Particular Reference to the Common Shrew (Sorex araneus L., 1758) in Central Siberia

May 2023

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9 Reads

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1 Citation

Izvestiia Akademii nauk. Seriia biologicheskaia / Rossiiskaia akademiia nauk

We examine temporal variation in a measure of developmental stability, the degree of fluctuating asymmetry of the characters of skull morphology, of the common shrew (Sorex araneus L., 1758) in Central Siberia. Four-year cycles in this population in the last century were accompanied by significant changes in the level of developmental stability. Population fluctuations under the climate change conditions in this century commonly occur without essential changes in developmental stability. Deterioration of developmental stability takes place occasionally in case of adverse overpopulation impact in the year of peak population abundance that is beyond the certain threshold level increased due to the climate change.


Sample sites of the sand lizard in the European part of the species range (samples 1–32 are located from the north to the south, from the Vologda region to the Krasnodar region).
Values of the developmental variability index (σ¯d 2) in the sand lizard at different incubation temperatures in the laboratory experiment (a) and in natural populations (b). Developmental variability is assessed by generalized variance of the difference in the character values on the left and on the right (for 13 meristic characters of pholidosis, number of scales). N is the number of samples from natural populations in the European part of the species range (samples 1–32 are located from the north to the south, from the Vologda region to the Krasnodar region).
Values of the total phenotypic variability index (σ¯∑2) in the sand lizard at different incubation temperatures in the laboratory experiment (a) and in natural populations (b). There is also a proportion of developmental variability (σ¯d 2, see Figure 2) in the total phenotypic variability (σ¯d 2/σ¯∑2) for natural populations (c). Total phenotypic variability is assessed by generalized variance of the sum of the character values on the left and on the right (for 13 meristic characters of pholidosis, number of scales). N is the number of samples from natural populations in the European part of the species range (samples 1–32 are located from the north to the south, from the Vologda region to the Krasnodar region).
Phenotypic Variation in a Species Range: Another Look (Developmental Stability Study of the Meristic Variation in the Sand Lizard Lacerta agilis)
  • Article
  • Full-text available

November 2022

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35 Reads

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4 Citations

Variation of the meristic characteristics of pholidosis in the sand lizard, Lacerta agilis, was studied both in laboratory experiments and in natural populations. The total phenotypic variability was assessed by the variation of the sum of the number of scales on the left and on the right sides of the body (l + r), while the measure of developmental stability, providing insight into the degree of fluctuating asymmetry, or developmental variability, was assessed by the variation of the difference in the character values on the left and on the right (l − r). Experimental incubation of eggs at different temperatures demonstrates that the minimal level of both kinds of variability corresponds to a certain temperature, which can be characterized as an optimal one, increasing both with an increase and with a decrease in the temperature from this regime. The data demonstrate the crucial role of the temperature impact for the phenotypic variation under study. An increase in the level of developmental variability to the north and to the south from the center part of the species range, in the absence of an obvious trend in geographic variation of the level of total phenotypic variability, assumes an increase in the role of developmental variability in the observed phenotypic diversity at the periphery of the species range. The results obtained indicate the importance of a population phenogenetic approach, based on the developmental stability study in natural populations, to provide certain information supposing the possible nature of phenotypic diversity in a species range.

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Developmental Noise and Biological System Condition: Prolegomena

November 2022

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73 Reads

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6 Citations

Developmental noise is a variety that is not related to the usually distinguished sources of phenotypic diversity, i.e., differences in the genotype and in the environment. This variation arises in the process of the realization of genetic information and reflects the imperfection of ontogenetic processes. The most common measure of it is the value of fluctuating asymmetry as slight deviations from the symmetry. Developmental noise proves to be one of the main sources of intrapopulation phenotypic diversity. The magnitude of this variability is an ontogenetic response to environmental or genetic stress, and its assessment, in fact, provides a unique opportunity to estimate the developing system condition. The level of developmental noise, characterizing an organism’s condition, acts as another population parameter that allows to approach the evaluation of the community condition. Initial deviations in the system condition can be detected even against the background of optimal estimates of abundance, biodiversity, and ecosystem functioning.


Fluctuating asymmetry as an indicator of stress

July 2022

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87 Reads

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13 Citations

Emerging Topics in Life Sciences

Fluctuating asymmetry as a special kind of asymmetry can be defined as deviations from a known predetermined ratio of the parts of morphological structure under study. As a special type of phenotypic variability fluctuating asymmetry is a manifestation of ontogenetic noise or developmental variability. This type of variability is ubiquitous and plays a significant role in the observed phenotypic diversity. The level of fluctuating asymmetry turns out to be an indicator of optimal developmental conditions and genetic coadaptation. It is also considered as a parameter of fitness. Thus, fluctuating asymmetry acts as a measure of developmental stability in developmental biology and as a measure of population condition in population biology.


Values of population indices in a common shrew population in Central Siberia in two studied periods: 1978–1982 [14] and 2002–2013 (original data). Abundance: number of animals per 100 trap-day. Breeding success: ratio between the number of young individuals born this summer and the number of breeding females. Asymmetry: average frequency of asymmetric manifestation per character (for 10 scull characters, number of foramina).
Fluctuating Asymmetry and Population Dynamics of the Common Shrew, Sorex araneus, in Central Siberia under Climate Change Conditions

November 2020

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59 Reads

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10 Citations

We examine possible temporal variation in a measure of developmental stability, providing insight into the degree of fluctuating asymmetry of several characters of skull morphology, of the common shrew, Sorex araneus L., 1758, in Central Siberia. The level of fluctuating asymmetry during the study period in the beginning of this century (2002–2013) is not correlated with population abundance, while at the end of the last century it was correlated with population abundance, suggesting that high density was the important negative factor affecting breeding females. The absence of an adverse effect of high abundance on developmental stability in the current situation can be related to both an impact of oscillations in environmental conditions and an increase in habitat carrying capacity due to the climate change. Positive correlation of population abundance with the number of adults born last summer and young specimens born this summer indicates the influence of winter and summer conditions on population size. If in the last century developmental stability was correlated with breeding success, indicating that both parameters were affected by the physiological condition of breeding females, in this century these two parameters vary independently, suggesting that breeding success may be affected by other population and habitat factors. Thus, the situation in the population under study is more similar to the noncyclic dynamics than to the four-year cycles, which were revealed for the population in the last century. The results indicate an importance of monitoring possible changes in developmental stability measure, as another population parameter, under climate change.


Fluctuating Asymmetry, Developmental Noise and Developmental Stability: Future Prospects for the Population Developmental Biology Approach

August 2020

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182 Reads

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40 Citations

Developmental noise—which level may vary within a certain backlash allowed by natural selection—is a reflection of the state of a developing system or developmental stability. Phenotypic variations inside the genetically determined norm observed in case of fluctuating asymmetry provide a unique opportunity for evaluating this form of ontogenetic variability. Low levels of developmental noise for the biologic system under study is observed under certain conditions, while its increase acts as a measure of stress. The concordance of changes in developmental stability with changes in other parameters of developmental homeostasis indicates the significance of fluctuating asymmetry estimates. All this determines the future prospects of the study of fluctuating asymmetry not only for developmental biology, but also for population biology. The study of developmental stability may act as the basis of an approach of population developmental biology to assess the nature of the phenotypic diversity and the state of natural populations under various impacts and during evolutionary transformations.


Citations (16)


... Without entering into a detailed analysis of the character of the numerical space, it should be pointed out that empirical evidence shows that the processes which occur in this space are well suited to logical operations (McCulloch [17]) and for mathematical operations. ...

Reference:

Neural Macrostates
Homeostatic Mechanisms of Biological Systems: Prolegomena
  • Citing Article
  • May 2023

Izvestiia Akademii nauk. Seriia biologicheskaia / Rossiiskaia akademiia nauk

... Studies should include all shrew species present in the locality/region, and results must be related to climatic gradients or latitudes. It is possible that climatic effects have a stronger influence on shrews at higher latitudes [78]. The evaluation of shrew communities not only in forests, but also in other habitats simultaneously, along with studies of their diets, is highly desirable to understand recent changes in the habitat distribution of shrew species in response to anthropogenic transformations. ...

Developmental Stability, Population Dynamics, and Climate Change, with Particular Reference to the Common Shrew (Sorex areneus L. 1758) in Central Siberia
  • Citing Article
  • August 2023

Biology Bulletin

... Earlier, we published a Special Issue of Symmetry, "Fluctuating Asymmetry as a Measure of Stress" (2020), containing articles devoted to FA variability in trees, insects, and small mammals under the effect of stress-inducing, primarily anthropogenic factors, and we continue this discussion in this Special Issue titled "Fluctuating Asymmetry as a Measure of Stress: Influence of Natural and Anthropogenic Factors". This Special Issue includes four original articles that focus on the FA in woody plants [8], algae [9], terrestrial vertebrates [10,11], and one communication [12]. To assess the FA value, the authors used different approaches, i.e., calculation of meristic features [11], measurement of plastic features [8], and methods of geometric morphometry [9,10]. ...

Phenotypic Variation in a Species Range: Another Look (Developmental Stability Study of the Meristic Variation in the Sand Lizard Lacerta agilis)

... Earlier, we published a Special Issue of Symmetry, "Fluctuating Asymmetry as a Measure of Stress" (2020), containing articles devoted to FA variability in trees, insects, and small mammals under the effect of stress-inducing, primarily anthropogenic factors, and we continue this discussion in this Special Issue titled "Fluctuating Asymmetry as a Measure of Stress: Influence of Natural and Anthropogenic Factors". This Special Issue includes four original articles that focus on the FA in woody plants [8], algae [9], terrestrial vertebrates [10,11], and one communication [12]. To assess the FA value, the authors used different approaches, i.e., calculation of meristic features [11], measurement of plastic features [8], and methods of geometric morphometry [9,10]. ...

Developmental Noise and Biological System Condition: Prolegomena

... The populations in optimal conditions tend to exhibit low FA levels, while those exposed to stressful conditions have higher levels of average FA (Shadrina & Vol'pert, 2016). The FA can be a useful indicator of stress caused by environmental and/or genetic factors (Parsons, 1992;Zakharov & Trofimov, 2022). ...

Fluctuating asymmetry as an indicator of stress
  • Citing Article
  • July 2022

Emerging Topics in Life Sciences

... A preliminary analysis of the entire community of small mammals showed that at the end of the 20thbeginning of the 21st century, cyclical fluctuations were replaced by noncyclical ones (Sheftel & Yakushov 2022). During this period, the trend of positive correlation between population size and breeding success in the model species S. araneus persisted; however, there was no violation of the stability of development (Zakharov et al. 2011(Zakharov et al. , 2020. A change in the patterns of dynamics occurred in other regions of the Holarctic, for example, in Hokkaido, Japan (Saitoh et al. 2006), Scotland (Bierman et al. 2006), Norway (Ims et al. 2008), Sweden (Hörnfeldt 2004), and Canada (Berteaux et al. 2006). ...

Fluctuating Asymmetry and Population Dynamics of the Common Shrew, Sorex araneus, in Central Siberia under Climate Change Conditions

... In such cases, plasticity may fail to fully compensate for stress, leading to maladaptive traits or impaired development (Schwab et al., 2019;Klingenberg, 2019). One well-documented indicator of developmental instability is fluctuating asymmetry, which refers to small, random deviations from perfect bilateral symmetry (Palmer and Strobeck, 1986;Zakharov et al., 2020). Elevated levels of fluctuating asymmetry are often observed in organisms subjected to environmental stressors, such as contamination or nutritional deficiency, reflecting an inability to maintain stable development (Møller and Swaddle, 1997;De Coster et al., 2013;Hammelman et al., 2020). ...

Fluctuating Asymmetry, Developmental Noise and Developmental Stability: Future Prospects for the Population Developmental Biology Approach

... Tree plantings are an important object of urban ecosystem formation as well as a valuable indicator of the state of the environment. Researchers more often use various morphometric indicators of vegetative and generative organs of plants as bioindicative signs, less oftenchanges in the rhythms of their seasonal development [3][4][5][6][7][8][9][10]. In the works of the populationontogenetic direction [1,11,12] it is shown that the heterogeneity of the rhythms of seasonal development of individuals of one cenopopulation can be a mechanism of adaptation to changes in environmental conditions. ...

Assessment of the Stability of Phenological Indices of the Silver Birch Betula pendula under Climate Change
  • Citing Article
  • March 2020

Biology Bulletin

... Different authors have shown that an increase in FA is observed in different structures and organisms of different trophic levels in territories with increased background radiation [6][7][8][9], cities and towns, areas affected by industrial and agricultural enterprises, and agroecosystems [10][11][12][13][14][15][16][17][18][19][20][21][22]. Plants, due to their sedentary lifestyle and multiple morphological structures, are a convenient research object for studying developmental stability; thus, they have a large number of works devoted to them [13,[22][23][24][25][26][27][28][29][30][31][32][33][34][35][36][37][38][39]. At the same time, some role of a secondary wood species in mixed forests. ...

Assessment of Plant Status by the Stability of Development in Natural and Anthropogenic Conditions (Fluctuating Asymmetry of Leaf Features of the Silver Birch, Betula pendula Roth)

Biology Bulletin

V. M. Zakharov

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N. V. Turmukhametova

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[...]

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... Temperature (Debat et al., 2009;Gerard et al., 2018;Siegel et al., 1977), environmental toxins (Amarena et al., 1994;Coda et al., 2016;Costa & Nomura, 2016;Ding et al., 2022;J. M. Keller et al., 2007;Kristensen et al., 2004;Lens et al., 2002;Nunes et al., 2001;Oleksyk et al., 2004;Romero et al., 2017), habitat disturbance Frota et al., 2019;Lazić et al., 2013Lazić et al., , 2015Maestri et al., 2015;Teixeira et al., 2006;Wójcik et al., 2007), population density (Sheftel et al., 2020;Tuyttens et al., 2005;Zakharov et al., 1991), disease (Jung & von Cramon-Taubadel, 2018;Kohn & Bennett, 1986;O'Donnell & Moes, 2020;Weisensee, 2013), nutritional stress (DeLeon, 2007;Rusk et al., 2021), prenatal stress (Planas et al., 2018, psychosocial stress (Newell-Morris et al., 1989;Özener, 2010;Zurawiecka et al., 2019), and parasites (Agnew & Koella, 1997;Folstad et al., 1996;Jojić et al., 2021;Polak, 1997) have all been associated with higher fluctuating asymmetry levels. Environmental toxins include heavy metals, radiation, PCBs (polychlorinated biphenyls), and pesticides, while habitat disturbance is comprised of both anthropogenic and natural components and includes deforestation, habitat fragmentation, increased human traffic, and urbanization. ...

Assessment of Developmental Stability during Population Dynamics of the Korean Field Mouse (Apodemus peninsulae) in Mongolia

Biology Bulletin