Uriah Finkel’s research while affiliated with The Israel National Institute for Health Policy and Health Services Research and other places

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Publications (6)


Association of Renin-Angiotensin-Aldosterone Inhibitors with COVID-19 Infection and Disease Severity among Individuals with Hypertension
  • Article

May 2022

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9 Reads

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2 Citations

The Israel Medical Association journal

Moria Mahanaimy

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Uriah Finkel

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Noam Barda

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[...]

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Becca Feldman

Background: The association between use of renin-angiotensin-aldosterone (RAAS) inhibitors and both SARS-CoV-2 infection and the development of severe COVID-19 has been presented in the recent medical literature with inconsistent results. Objectives: To assess the association between RAAS inhibitor use and two outcomes: infection with SARS-CoV-2 (Model 1) and severe COVID-19 among those infected (Model 2). Methods: We accessed used electronic health records of individuals from Israel who were receiving anti-hypertensive medications for this retrospective study. For Model 1 we used a case-control design. For Model 2 we used a cohort design. In both models, inverse probability weighting adjusted for identified confounders as part of doubly robust outcome regression. Results: We tested 38,554 individuals for SARS-CoV-2 who had hypertension and were being treated with medication; 691 had a positive test result. Among those with a positive test, 119 developed severe illness. There was no association between RAAS inhibitor use and a positive test. Use of RAAS inhibitors was associated with a decreased risk for severe COVID-19 (adjusted odds ratio [OR] 0.47, 95% confidence interval [95%CI] 0.29-0.77) compared with users of non-RAAS anti-hypertensive medication. The association remained significant when use of angiotensin-converting-enzyme inhibitors (adjusted OR 0.46, 95%CI 0.27-0.77) and angiotensin II receptor blockers (adjusted OR 0.39, 95%CI 0.16-0.95) were analyzed separately. Conclusions: Among individuals with hypertension using RAAS inhibitors, we found a lower risk of severe disease compared to those using non-RAAS anti-hypertensive medications. This finding suggests that RAAS inhibitors may have a protective effect on COVID-19 severity among individuals with medically treated hypertension.


Short-term Adverse Events After the Third Dose of the BNT162b2 mRNA COVID-19 Vaccine in Adults 60 Years or Older
  • Article
  • Full-text available

April 2022

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28 Reads

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16 Citations

JAMA Network Open

This survey study assesses the occurrence of short-term adverse events in adults 60 years or older who received a booster dose of the BNT162B2 mRNA vaccine.

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Variant frequencies of SARS-CoV-2-positive samples
a, Variant frequencies across the time of the study, including the number of samples collected throughout the study. All values were calculated by averaging over a sliding window of 7 days. All samples sequenced in this study are included herein, including unpaired samples. b, Breakdown of variant frequencies based on the four groups of this study. The pie charts display the proportion of each variant (B.1.1.7, B.1.351 and WT) for paired vaccinated cases versus non-vaccinated controls separated by dosage (as defined in the main text), with cases on the left and their associated control on the right. Only paired samples are shown in the figure.
Results of matched vaccinated cases and non-vaccinated controls separated by effectiveness and VOC
In each table, a cell reflects the number of pairs concordant (upper left and lower right) or discordant (upper right or lower left) for a given variant. The left panel focuses on the comparison between B.1.1.7 and WT (pairs with B.1.351 were removed), whereas the right panel focuses on comparing B.1.351 and either WT or B.1.1.7 (denoted collectively as ‘other’). Of note, the McNemar test focuses on a comparison of only discordant samples. Under a null hypothesis of equal vaccine effectiveness against all variants, we expect an equal number of discordant pairs in the upper right cell and the lower left cell, in each of the tables.
Breakdown of SARS-CoV-2 variant distribution during windows of weeks post vaccination
The first three panels correspond to the dose1 group and the last three panels correspond to the dose2 group. The number of pairs and the isolation date range of the samples are noted for each panel. The dose2 B.1.351 case that is shown in the 14–20 days category was isolated exactly 14 days after the second dose.
A maximum-likelihood phylogenetic tree of Israeli SARS-CoV-2 samples including those sequenced herein
Vaccinees are colored in violet or green, non-vaccinees are colored in brown, and black sequences are publicly available sequences from Israel (marked as ‘other’, Supplementary Table 2). Clades composed of the B.1.1.7, B.1.351 and WT sequences are encircled in blue, orange and gray, respectively.
Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2-mRNA-vaccinated individuals

August 2021

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694 Reads

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357 Citations

Nature Medicine

The BNT162b2 mRNA vaccine is highly effective against SARS-CoV-2. However, apprehension exists that variants of concern (VOCs) may evade vaccine protection, due to evidence of reduced neutralization of the VOCs B.1.1.7 and B.1.351 by vaccine sera in laboratory assays. We performed a matched cohort study to examine the distribution of VOCs in infections of BNT162b2 mRNA vaccinees from Clalit Health Services (Israel) using viral genomic sequencing, and hypothesized that if vaccine effectiveness against a VOC is reduced, its proportion among breakthrough cases would be higher than in unvaccinated controls. Analyzing 813 viral genome sequences from nasopharyngeal swabs, we showed that vaccinees who tested positive at least 7 days after the second dose were disproportionally infected with B.1.351, compared with controls. Those who tested positive between 2 weeks after the first dose and 6 days after the second dose were disproportionally infected by B.1.1.7. These findings suggest reduced vaccine effectiveness against both VOCs within particular time windows. Our results emphasize the importance of rigorously tracking viral variants, and of increasing vaccination to prevent the spread of VOCs.


Demographic statistics on paired cases and controls sequenced herein. Absolute counts are shown, relative proportions are in brackets.
Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2 mRNA vaccinated individuals

April 2021

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106 Reads

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62 Citations

The SARS-CoV-2 pandemic has been raging for over a year, creating global detrimental impact. The BNT162b2 mRNA vaccine has demonstrated high protection levels, yet apprehension exists that several variants of concerns (VOCs) can surmount the immune defenses generated by the vaccines. Neutralization assays have revealed some reduction in neutralization of VOCs B.1.1.7 and B.1.351, but the relevance of these assays in real life remains unclear. Here, we performed a case-control study that examined whether BNT162b2 vaccinees with documented SARS-CoV-2 infection were more likely to become infected with B.1.1.7 or B.1.351 compared with unvaccinated individuals. Vaccinees infected at least a week after the second dose were disproportionally infected with B.1.351 (odds ratio of 8:1). Those infected between two weeks after the first dose and one week after the second dose, were disproportionally infected by B.1.1.7 (odds ratio of 26:10), suggesting reduced vaccine effectiveness against both VOCs under different dosage/timing conditions. Nevertheless, the B.1.351 incidence in Israel to-date remains low and vaccine effectiveness remains high against B.1.1.7, among those fully vaccinated. These results overall suggest that vaccine breakthrough infection is more frequent with both VOCs, yet a combination of mass-vaccination with two doses coupled with non-pharmaceutical interventions control and contain their spread.


and feature-specific SHAP values for the baseline model
a A summary plot of the SHAP values for each feature. Going from top to bottom, features are ordered by their overall importance in creating the final prediction (sum of SHAP values). In each feature (line), every point is a specific case (individual), with colors ranging from red (high values of the predictor) to blue (low values of the predictor). Gray points signal missing values. The point’s location on the X-axis represents the SHAP value—the effect the variable had on the prediction in this specific individual, with points further to the right marking that for that individual this covariate contributed to increasing of the risk and points to the left indicate that the covariate contributed to decreasing the risk. The vertical line in the middle represents no change in risk. b A plot of the odds ratio for different values of age. A smoothed red line is fit to the curve and a horizontal gray line is drawn at odds ratio = 1. c A plot of the odds ratio for different values of percent of lymphocytes in the blood. A smoothed red line is fit to the curve and a horizontal gray line is drawn at odds ratio = 1. d A plot of the odds ratio for different values of albumin. A smoothed red line is fit to the curve and a horizontal gray line is drawn at odds ratio = 1. a is based on the training set of the baseline population, n = 625,500 unique patients. b–d use a random sample of patients from this same population, n = 10,000 unique patients. SHAP SHapley Additive exPlanations, HDL high-density lipoprotein, COPD chronic obstructive pulmonary disease.
Performance charts for the baseline model
a Calibration plot, plotting the observed outcome against the predicted probabilities. The diagonal gray line represents perfect calibration. A smoothed line is fit to the curve, and points are drawn to represent the averages in ten discretized bins. The rug under the plot illustrates the distribution of predictions. b Receiver-operating characteristics curve, plotting the sensitivity against one minus specificity for different values of the threshold. The diagonal gray line represents a model with no discrimination. The area under the curve, with its 95% confidence interval, is shown on the top-left. Both panels use the test population of the baseline model, n = 315,000 unique patients. AUROC area under the receiver-operating characteristics curve, CI confidence interval.
Performance charts for the COVID-19 model
a A plot of the positive predictive value against the sensitivity of the predictor for different thresholds. The central line represents the point estimates from the full population. The light band around the line represents point-wise 95% confidence intervals derived by bootstrapping. Only thresholds up to 15% absolute risk were plotted because of very low outcome rates in higher thresholds, which resulted in instability. The colored dots show the performance of three binary classifiers. b A plot of the sensitivity against the percent of patients identified as high risk for different thresholds. The central line represents the point estimates from the full population. The light band around the line represents point-wise 95% confidence intervals derived by bootstrapping. The colored dots show the performance of three binary classifiers. Both panels use the COVID-19 patient population, n = 4179 unique patients. CDC Centers for Disease Control and prevention, COVID-19 coronavirus disease 2019.
Calibration plot and decision curves comparing the COVID-19 and baseline models
a Calibration plots plotting the observed outcome against the predicted probabilities of both models. The diagonal gray line represents perfect calibration. A smoothed line is fit to each curve. The rug above and under the plots illustrates the distribution of predictions for each model. The plot covers 95% of COVID-19 predictions. b The decision curve plots the standardized net benefit against different decision thresholds for both models. Net benefit is a measure of utility that calculates a weighted sum of true positives and false positives, weighted according to the threshold. Vertical dashed lines were added at relevant decision thresholds that were used in practice. Both panels use the COVID-19 patient population, n = 4179 unique patients. COVID-19 coronavirus disease 2019.
Developing a COVID-19 mortality risk prediction model when individual-level data are not available

September 2020

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785 Reads

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134 Citations

At the COVID-19 pandemic onset, when individual-level data of COVID-19 patients were not yet available, there was already a need for risk predictors to support prevention and treatment decisions. Here, we report a hybrid strategy to create such a predictor, combining the development of a baseline severe respiratory infection risk predictor and a post-processing method to calibrate the predictions to reported COVID-19 case-fatality rates. With the accumulation of a COVID-19 patient cohort, this predictor is validated to have good discrimination (area under the receiver-operating characteristics curve of 0.943) and calibration (markedly improved compared to that of the baseline predictor). At a 5% risk threshold, 15% of patients are marked as high-risk, achieving a sensitivity of 88%. We thus demonstrate that even at the onset of a pandemic, shrouded in epidemiologic fog of war, it is possible to provide a useful risk predictor, now widely used in a large healthcare organization.


Figure 1 -Summary and feature-specific SHAP values for the baseline model
Figure 2 -Performance charts for the baseline model
Figure 3 -Performance charts for the COVID-19 model
Performing risk stratification for COVID-19 when individual level data is not available, the experience of a large healthcare organization

April 2020

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1,269 Reads

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11 Citations

With the global coronavirus disease 2019 (COVID-19) pandemic, there is an urgent need for risk stratification tools to support prevention and treatment decisions. The Centers for Disease Control and Prevention (CDC) listed several criteria that define high-risk individuals, but multivariable prediction models may allow for a more accurate and granular risk evaluation. In the early days of the pandemic, when individual level data required for training prediction models was not available, a large healthcare organization developed a prediction model for supporting its COVID-19 policy using a hybrid strategy. The model was constructed on a baseline predictor to rank patients according to their risk for severe respiratory infection or sepsis (trained using over one-million patient records) and was then post-processed to calibrate the predictions to reported COVID-19 case fatality rates. Since its deployment in mid-March, this predictor was integrated into many decision-processes in the organization that involved allocating limited resources. With the accumulation of enough COVID-19 patients, the predictor was validated for its accuracy in predicting COVID-19 mortality among all COVID-19 cases in the organization (3,176, 3.1% death rate). The predictor was found to have good discrimination, with an area under the receiver-operating characteristics curve of 0.942. Calibration was also good, with a marked improvement compared to the calibration of the baseline model when evaluated for the COVID-19 mortality outcome. While the CDC criteria identify 41% of the population as high-risk with a resulting sensitivity of 97%, a 5% absolute risk cutoff by the model tags only 14% to be at high-risk while still achieving a sensitivity of 90%. To summarize, we found that even in the midst of a pandemic, shrouded in epidemiologic "fog of war" and with no individual level data, it was possible to provide a useful predictor with good discrimination and calibration.

Citations (6)


... Several studies have been conducted to clarify the association between the RAAS and COVID-19 [4][5][6][29][30][31][32][33][34]. HT and DM, which are associated with unfavorable outcomes in patients with COVID-19, are closely correlated with increased activation of the ACE/Ang 2 axis. ...

Reference:

Angiotensin-Converting Enzyme (ACE) level, but not ACE gene polymorphism, is associated with prognosis of COVID-19 infection: Implications for diabetes and hypertension
Association of Renin-Angiotensin-Aldosterone Inhibitors with COVID-19 Infection and Disease Severity among Individuals with Hypertension
  • Citing Article
  • May 2022

The Israel Medical Association journal

... A randomized clinical trial found that local pain and fatigue were the most common adverse effects after a fourth dose of BNT162b2 or mRNA-1273 [6]. Govorkova et al. described that the most common adverse effects include mild symptoms such as pain, swelling, and redness in the area where the injection was applied, in addition to systemic reactions after the vaccine such as headache, drowsiness, or fatigue [7]; in another study, it was observed that 30% of those surveyed presented at least one adverse effect, 24.8% reported local reactions to vaccination, and 16.6% reported systemic reactions, with the most common adverse effects being local pain, fatigue, and general malaise [8]. In addition, isolated cases of severe symptoms have been reported as cases of severe acute myocarditis after receiving the third dose of the vaccine [9]. ...

Short-term Adverse Events After the Third Dose of the BNT162b2 mRNA COVID-19 Vaccine in Adults 60 Years or Older

JAMA Network Open

... The ongoing genetic evolution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) and the emergence of highly transmissible variants of concern (VOCs) have significantly hampered vaccine effectiveness against transmission and symptomatic infection [1][2][3][4][5][6][7][8][9][10][11][12][13][14][15][16][17]. Although booster doses offer protection against severe disease and hospitalization, challenges such as waning immunity, continuous exposure to immune-evasive VOCs, and insufficient induction of mucosal immunity have notably decreased vaccine effectiveness, contributing to the sustained circulation of SARS-CoV-2 [5][6][7][8][9][10][11][17][18][19][20][21][22][23]. ...

Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2-mRNA-vaccinated individuals

Nature Medicine

... The first country to carry out mass vaccination against COVID-19 was Israel. On Sunday, 20 December 2020, the Israeli population received the first dosage of the vaccine [14][15][16], resulting in a vaccination rate of 60% of adults and those in at-risk categories. ...

Evidence for increased breakthrough rates of SARS-CoV-2 variants of concern in BNT162b2 mRNA vaccinated individuals

... The technical and ethical challenges or scenarios do not affect the achievement of AI systems in current diagnostic activities. Barda et al. (2020) have proposed a COVID-19 mortality risk prediction model that does not require individual patient data. It is built with the help of hybrid AI techniques and has reached an AUC level of 0.943. ...

Developing a COVID-19 mortality risk prediction model when individual-level data are not available

... Also, some studies focused on predicting the risk of COVID-19 in the general population, for example, using data from hospital admission for non-COVID-19 diseases (non-tuberculosis pneumonia, influenza, acute bronchitis) [17], or using machine learning to assess the benefit of the mask [18]. Finally, some studies focused on prognostic models for patients diagnosed with COVID-19 aimed to predict progression to a more severe or critical status [19][20][21][22]. To our knowledge, no study focused on industry surveillance systems to estimate and predict the incidence of COVID-19 and to provide guidelines on infection control in the occupational setting. ...

Performing risk stratification for COVID-19 when individual level data is not available, the experience of a large healthcare organization